Multiple sequence alignment - TraesCS2D01G568100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G568100 chr2D 100.000 2330 0 0 1 2330 636189387 636191716 0.000000e+00 4303.0
1 TraesCS2D01G568100 chr2D 86.425 442 52 4 1078 1515 636089473 636089910 5.820000e-131 477.0
2 TraesCS2D01G568100 chr2D 95.673 208 9 0 1281 1488 636124442 636124649 3.710000e-88 335.0
3 TraesCS2D01G568100 chr2D 86.512 215 23 3 1473 1681 636126009 636126223 5.010000e-57 231.0
4 TraesCS2D01G568100 chr2D 91.538 130 9 2 617 745 636089020 636089148 6.620000e-41 178.0
5 TraesCS2D01G568100 chr2D 91.538 130 9 2 617 745 636120586 636120714 6.620000e-41 178.0
6 TraesCS2D01G568100 chr2D 78.995 219 34 12 406 615 636088725 636088940 3.120000e-29 139.0
7 TraesCS2D01G568100 chr2D 87.850 107 13 0 1695 1801 636090816 636090922 2.430000e-25 126.0
8 TraesCS2D01G568100 chr2D 79.245 159 12 10 845 1003 636120868 636121005 8.870000e-15 91.6
9 TraesCS2D01G568100 chr2D 100.000 28 0 0 197 224 645367732 645367705 4.000000e-03 52.8
10 TraesCS2D01G568100 chr2A 92.342 1358 59 20 594 1944 763309779 763308460 0.000000e+00 1890.0
11 TraesCS2D01G568100 chr2A 85.600 500 40 10 4 477 763310472 763309979 1.610000e-136 496.0
12 TraesCS2D01G568100 chr2A 94.444 270 13 2 1964 2232 763308470 763308202 4.630000e-112 414.0
13 TraesCS2D01G568100 chr2A 100.000 43 0 0 534 576 763309813 763309771 1.920000e-11 80.5
14 TraesCS2D01G568100 chr2B 85.928 469 56 6 1052 1515 794219669 794220132 2.080000e-135 492.0
15 TraesCS2D01G568100 chr2B 87.963 108 11 2 1695 1801 794221018 794221124 2.430000e-25 126.0
16 TraesCS2D01G568100 chr2B 94.286 35 2 0 2278 2312 298290496 298290530 1.000000e-03 54.7
17 TraesCS2D01G568100 chr3B 92.188 64 5 0 15 78 808018667 808018604 8.870000e-15 91.6
18 TraesCS2D01G568100 chr3B 100.000 29 0 0 196 224 758415818 758415790 1.000000e-03 54.7
19 TraesCS2D01G568100 chr3A 88.000 75 9 0 4 78 644686502 644686428 3.190000e-14 89.8
20 TraesCS2D01G568100 chr3A 86.842 76 10 0 12 87 716781344 716781419 4.130000e-13 86.1
21 TraesCS2D01G568100 chr3A 89.062 64 7 0 15 78 730074265 730074202 1.920000e-11 80.5
22 TraesCS2D01G568100 chr1B 92.063 63 4 1 12 73 659554393 659554331 1.150000e-13 87.9
23 TraesCS2D01G568100 chr7B 86.957 69 7 2 12 79 125057842 125057775 2.480000e-10 76.8
24 TraesCS2D01G568100 chr4D 90.566 53 5 0 2278 2330 35741083 35741135 1.160000e-08 71.3
25 TraesCS2D01G568100 chr6B 91.837 49 4 0 15 63 485874177 485874129 4.150000e-08 69.4
26 TraesCS2D01G568100 chr6D 81.013 79 13 2 146 224 2440775 2440851 6.950000e-06 62.1
27 TraesCS2D01G568100 chr7D 100.000 29 0 0 197 225 53374586 53374558 1.000000e-03 54.7
28 TraesCS2D01G568100 chrUn 100.000 28 0 0 197 224 24681820 24681793 4.000000e-03 52.8
29 TraesCS2D01G568100 chrUn 100.000 28 0 0 197 224 49502982 49503009 4.000000e-03 52.8
30 TraesCS2D01G568100 chrUn 94.286 35 1 1 197 230 69459406 69459440 4.000000e-03 52.8
31 TraesCS2D01G568100 chr7A 100.000 28 0 0 197 224 18131823 18131796 4.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G568100 chr2D 636189387 636191716 2329 False 4303.000 4303 100.0000 1 2330 1 chr2D.!!$F1 2329
1 TraesCS2D01G568100 chr2D 636088725 636090922 2197 False 230.000 477 86.2020 406 1801 4 chr2D.!!$F2 1395
2 TraesCS2D01G568100 chr2D 636120586 636126223 5637 False 208.900 335 88.2420 617 1681 4 chr2D.!!$F3 1064
3 TraesCS2D01G568100 chr2A 763308202 763310472 2270 True 720.125 1890 93.0965 4 2232 4 chr2A.!!$R1 2228
4 TraesCS2D01G568100 chr2B 794219669 794221124 1455 False 309.000 492 86.9455 1052 1801 2 chr2B.!!$F2 749

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
220 221 0.032815 GGGATCGGCTAGAGTTGCTC 59.967 60.0 0.0 0.0 0.0 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1938 7621 0.407918 TTTAGGTGAAGGGCTTGGGG 59.592 55.0 0.0 0.0 0.0 4.96 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 1.132453 GCTCGTGGGACTAAAATTGCC 59.868 52.381 0.00 0.00 0.00 4.52
28 29 5.477291 TCGTGGGACTAAAATTGCCATAAAA 59.523 36.000 0.00 0.00 36.76 1.52
31 32 6.090223 GTGGGACTAAAATTGCCATAAAAACG 59.910 38.462 0.00 0.00 36.76 3.60
34 35 7.148705 GGGACTAAAATTGCCATAAAAACGTTC 60.149 37.037 0.00 0.00 0.00 3.95
56 57 2.094100 TTTGCCTTGGTCAAATCCCA 57.906 45.000 5.57 0.00 0.00 4.37
63 64 3.181470 CCTTGGTCAAATCCCAAACGTTT 60.181 43.478 7.96 7.96 41.27 3.60
64 65 3.444703 TGGTCAAATCCCAAACGTTTG 57.555 42.857 29.80 29.80 37.90 2.93
82 83 7.931578 ACGTTTGGGATTTATCAATTCTGTA 57.068 32.000 0.00 0.00 0.00 2.74
100 101 4.098349 TCTGTATATTTAAGGGTCACGCGT 59.902 41.667 5.58 5.58 0.00 6.01
102 103 3.530265 ATATTTAAGGGTCACGCGTCA 57.470 42.857 9.86 0.00 0.00 4.35
103 104 1.435577 ATTTAAGGGTCACGCGTCAC 58.564 50.000 9.86 6.81 0.00 3.67
107 108 4.338539 GGGTCACGCGTCACTCGT 62.339 66.667 14.32 0.00 42.13 4.18
109 110 1.511464 GGTCACGCGTCACTCGTAG 60.511 63.158 14.32 0.00 42.13 3.51
122 123 5.108103 CGTCACTCGTAGTAAAAGTTTCACC 60.108 44.000 0.00 0.00 34.52 4.02
123 124 5.176406 GTCACTCGTAGTAAAAGTTTCACCC 59.824 44.000 0.00 0.00 0.00 4.61
155 156 3.739401 ATTAGGCTTTGGTTAGGTGCT 57.261 42.857 0.00 0.00 0.00 4.40
159 160 2.171003 GGCTTTGGTTAGGTGCTGATT 58.829 47.619 0.00 0.00 0.00 2.57
160 161 3.010138 AGGCTTTGGTTAGGTGCTGATTA 59.990 43.478 0.00 0.00 0.00 1.75
168 169 6.539173 TGGTTAGGTGCTGATTAGAGAAAAA 58.461 36.000 0.00 0.00 0.00 1.94
220 221 0.032815 GGGATCGGCTAGAGTTGCTC 59.967 60.000 0.00 0.00 0.00 4.26
237 238 7.286546 AGAGTTGCTCTTAAGTAGCTCATCATA 59.713 37.037 20.35 3.88 44.30 2.15
238 239 7.961351 AGTTGCTCTTAAGTAGCTCATCATAT 58.039 34.615 20.35 3.96 40.73 1.78
259 260 2.364324 TGAGACAGTGACAAGTGGGTAC 59.636 50.000 0.00 0.00 0.00 3.34
310 311 0.388134 TGTGTACGCGCTTTCTCCTC 60.388 55.000 5.73 0.00 0.00 3.71
313 314 0.802607 GTACGCGCTTTCTCCTCTGG 60.803 60.000 5.73 0.00 0.00 3.86
337 338 4.785453 CCTCCCAGGCAGGTTCGC 62.785 72.222 0.00 0.00 34.66 4.70
347 348 1.956170 CAGGTTCGCGCAAGAGTGT 60.956 57.895 8.75 0.00 43.02 3.55
357 358 2.031682 GCGCAAGAGTGTTTGACTTGAT 60.032 45.455 0.30 0.00 42.12 2.57
361 362 5.343249 GCAAGAGTGTTTGACTTGATTTGT 58.657 37.500 0.00 0.00 42.12 2.83
362 363 5.456822 GCAAGAGTGTTTGACTTGATTTGTC 59.543 40.000 0.00 0.00 42.12 3.18
365 366 6.352516 AGAGTGTTTGACTTGATTTGTCTCT 58.647 36.000 0.00 0.00 33.83 3.10
369 370 7.337942 AGTGTTTGACTTGATTTGTCTCTCTTT 59.662 33.333 0.00 0.00 35.63 2.52
372 373 6.867662 TGACTTGATTTGTCTCTCTTTTCC 57.132 37.500 0.00 0.00 35.63 3.13
378 379 6.129179 TGATTTGTCTCTCTTTTCCTTTGGT 58.871 36.000 0.00 0.00 0.00 3.67
379 380 6.263168 TGATTTGTCTCTCTTTTCCTTTGGTC 59.737 38.462 0.00 0.00 0.00 4.02
402 403 9.386010 GGTCACCAAAACTATGTATGTATGTAA 57.614 33.333 0.00 0.00 0.00 2.41
505 572 4.574674 AAGAATCATTACCTCAGGCACA 57.425 40.909 0.00 0.00 0.00 4.57
525 615 3.528370 CTCCTCCGGGCGGTGTAG 61.528 72.222 0.00 0.00 36.47 2.74
532 622 1.005394 CGGGCGGTGTAGAGTTTGT 60.005 57.895 0.00 0.00 0.00 2.83
573 721 6.493189 TGCAACTTTTTAAATTCCCTCCTT 57.507 33.333 0.00 0.00 0.00 3.36
574 722 6.521162 TGCAACTTTTTAAATTCCCTCCTTC 58.479 36.000 0.00 0.00 0.00 3.46
575 723 5.633601 GCAACTTTTTAAATTCCCTCCTTCG 59.366 40.000 0.00 0.00 0.00 3.79
584 732 5.599999 AATTCCCTCCTTCGGATATATCG 57.400 43.478 6.64 2.93 0.00 2.92
588 736 3.243569 CCCTCCTTCGGATATATCGATGC 60.244 52.174 8.54 0.00 36.49 3.91
590 738 4.261405 CCTCCTTCGGATATATCGATGCTC 60.261 50.000 8.54 1.73 36.49 4.26
675 902 9.490083 ACTAATGAAGTCCTAATAGTACCACTT 57.510 33.333 0.00 0.00 30.33 3.16
746 978 0.319383 AGCTCTTGTGTGTCTCTGCG 60.319 55.000 0.00 0.00 0.00 5.18
758 1012 0.465705 TCTCTGCGTTCCATCCATCC 59.534 55.000 0.00 0.00 0.00 3.51
786 1111 2.897641 ATTCTGCTGTCGCTCGCTCC 62.898 60.000 0.00 0.00 36.97 4.70
828 1153 3.640967 GCTCTCTCTCTCTCTCTCTCTCT 59.359 52.174 0.00 0.00 0.00 3.10
830 1155 5.136068 TCTCTCTCTCTCTCTCTCTCTCT 57.864 47.826 0.00 0.00 0.00 3.10
831 1156 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
832 1157 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
833 1158 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
834 1159 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
835 1160 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
836 1161 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
837 1162 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
838 1163 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
839 1164 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
840 1165 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
841 1166 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
842 1167 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
843 1168 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
844 1169 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
845 1170 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
846 1171 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
847 1172 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
848 1173 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
849 1174 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
850 1175 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
851 1176 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
852 1177 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
853 1178 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
854 1179 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
855 1180 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
870 1195 4.871822 TCTCTCTCTCTCTCTCTCTCTCA 58.128 47.826 0.00 0.00 0.00 3.27
884 1209 2.027385 TCTCTCACATCAGGGACATCG 58.973 52.381 0.00 0.00 0.00 3.84
900 1225 2.093537 ATCGGCTCAGCTCGAATCCC 62.094 60.000 13.22 0.00 35.66 3.85
916 1241 3.553828 ATCCCGTGATCCGTTACATTT 57.446 42.857 0.00 0.00 33.66 2.32
917 1242 3.337694 TCCCGTGATCCGTTACATTTT 57.662 42.857 0.00 0.00 33.66 1.82
955 1280 6.853362 GCAAAGCTAACTTAACTTGTCTTCTG 59.147 38.462 0.00 0.00 34.05 3.02
970 1295 1.532604 TTCTGGCAGTCGGTCGTCAT 61.533 55.000 15.27 0.00 0.00 3.06
1032 1357 0.951040 CATCCGAGGCGAATAAGGGC 60.951 60.000 0.00 0.00 0.00 5.19
1199 1527 6.845908 AGGATAACTCATGGATGCAGTTTAT 58.154 36.000 2.46 0.00 33.47 1.40
1244 1653 2.819595 CGCCGTGGACAAGGATGG 60.820 66.667 8.49 0.00 31.21 3.51
1480 5056 8.679100 TCTTAACCTCAAGAAATGTTTTTCGAA 58.321 29.630 0.00 0.00 44.88 3.71
1499 6450 7.962964 TTCGAAAGTGTTCTGACTATGAATT 57.037 32.000 0.00 0.00 0.00 2.17
1594 7001 3.453424 GTGGTTTTTGGAATTTGCGACT 58.547 40.909 0.00 0.00 0.00 4.18
1765 7448 7.834068 ATATACTTTATCATGGCGATGACAC 57.166 36.000 14.05 0.00 41.52 3.67
1766 7449 2.866156 ACTTTATCATGGCGATGACACG 59.134 45.455 14.05 4.37 41.52 4.49
1841 7524 6.785191 TGAGAAAAACTCTGTGTTCACAATC 58.215 36.000 7.07 0.00 45.13 2.67
1913 7596 8.299990 ACTATAATCTCTAATCATTCCCTCGG 57.700 38.462 0.00 0.00 0.00 4.63
1937 7620 7.201705 CGGAATTCTAATTTGGAGGGTTAACTC 60.202 40.741 5.23 0.21 36.76 3.01
1945 7628 4.757773 GGGTTAACTCCCCCAAGC 57.242 61.111 5.42 0.00 41.54 4.01
1946 7629 1.000019 GGGTTAACTCCCCCAAGCC 60.000 63.158 5.42 0.00 41.54 4.35
1947 7630 1.000019 GGTTAACTCCCCCAAGCCC 60.000 63.158 5.42 0.00 0.00 5.19
1948 7631 1.506907 GGTTAACTCCCCCAAGCCCT 61.507 60.000 5.42 0.00 0.00 5.19
1949 7632 0.408309 GTTAACTCCCCCAAGCCCTT 59.592 55.000 0.00 0.00 0.00 3.95
1950 7633 0.702316 TTAACTCCCCCAAGCCCTTC 59.298 55.000 0.00 0.00 0.00 3.46
1951 7634 0.476808 TAACTCCCCCAAGCCCTTCA 60.477 55.000 0.00 0.00 0.00 3.02
1952 7635 2.081585 AACTCCCCCAAGCCCTTCAC 62.082 60.000 0.00 0.00 0.00 3.18
1953 7636 3.264845 TCCCCCAAGCCCTTCACC 61.265 66.667 0.00 0.00 0.00 4.02
1954 7637 3.268032 CCCCCAAGCCCTTCACCT 61.268 66.667 0.00 0.00 0.00 4.00
1955 7638 1.928567 CCCCCAAGCCCTTCACCTA 60.929 63.158 0.00 0.00 0.00 3.08
1956 7639 1.506028 CCCCCAAGCCCTTCACCTAA 61.506 60.000 0.00 0.00 0.00 2.69
1957 7640 0.407918 CCCCAAGCCCTTCACCTAAA 59.592 55.000 0.00 0.00 0.00 1.85
1958 7641 1.545841 CCCAAGCCCTTCACCTAAAC 58.454 55.000 0.00 0.00 0.00 2.01
1959 7642 1.545841 CCAAGCCCTTCACCTAAACC 58.454 55.000 0.00 0.00 0.00 3.27
1960 7643 1.075536 CCAAGCCCTTCACCTAAACCT 59.924 52.381 0.00 0.00 0.00 3.50
1961 7644 2.307686 CCAAGCCCTTCACCTAAACCTA 59.692 50.000 0.00 0.00 0.00 3.08
1962 7645 3.610911 CAAGCCCTTCACCTAAACCTAG 58.389 50.000 0.00 0.00 0.00 3.02
1963 7646 3.200958 AGCCCTTCACCTAAACCTAGA 57.799 47.619 0.00 0.00 0.00 2.43
1964 7647 3.527937 AGCCCTTCACCTAAACCTAGAA 58.472 45.455 0.00 0.00 0.00 2.10
1965 7648 3.263681 AGCCCTTCACCTAAACCTAGAAC 59.736 47.826 0.00 0.00 0.00 3.01
1976 7659 6.329460 ACCTAAACCTAGAACTCCTCAAAACT 59.671 38.462 0.00 0.00 0.00 2.66
2022 7705 8.814235 CAAATTTTTATTGCCATCTCTAGCTTG 58.186 33.333 0.00 0.00 0.00 4.01
2034 7717 6.596888 CCATCTCTAGCTTGATGAGTGAAAAA 59.403 38.462 19.15 0.00 41.69 1.94
2057 7740 0.453793 TAACAATGCCCGCATTTCCG 59.546 50.000 12.14 4.66 43.32 4.30
2059 7742 2.362375 AATGCCCGCATTTCCGGT 60.362 55.556 9.10 0.00 46.71 5.28
2067 7750 3.429135 GCCCGCATTTCCGGTTTAATAAA 60.429 43.478 0.00 0.00 46.71 1.40
2072 7755 7.176741 CCGCATTTCCGGTTTAATAAATTTTG 58.823 34.615 0.00 0.00 43.24 2.44
2128 7811 9.436957 AATATAATAACCGAGCAATAGACAAGG 57.563 33.333 0.00 0.00 0.00 3.61
2197 7880 8.574251 TTATAATTACCAAGCAACTGACACAT 57.426 30.769 0.00 0.00 0.00 3.21
2218 7901 3.605664 GGGCGGCAATGTATGGGC 61.606 66.667 12.47 0.00 0.00 5.36
2232 7915 7.393234 GCAATGTATGGGCTAATAGGTTCATTA 59.607 37.037 0.00 0.00 0.00 1.90
2233 7916 8.730680 CAATGTATGGGCTAATAGGTTCATTAC 58.269 37.037 0.00 0.00 0.00 1.89
2245 7928 4.440839 GGTTCATTACCTGCAAGAAAGG 57.559 45.455 0.00 0.00 44.10 3.11
2246 7929 4.079253 GGTTCATTACCTGCAAGAAAGGA 58.921 43.478 0.00 0.00 44.10 3.36
2247 7930 4.706962 GGTTCATTACCTGCAAGAAAGGAT 59.293 41.667 0.00 0.00 44.10 3.24
2248 7931 5.185828 GGTTCATTACCTGCAAGAAAGGATT 59.814 40.000 0.00 0.00 44.10 3.01
2249 7932 6.377146 GGTTCATTACCTGCAAGAAAGGATTA 59.623 38.462 0.00 0.00 44.10 1.75
2250 7933 7.093945 GGTTCATTACCTGCAAGAAAGGATTAA 60.094 37.037 0.00 0.00 44.10 1.40
2251 7934 7.391148 TCATTACCTGCAAGAAAGGATTAAC 57.609 36.000 0.00 0.00 38.27 2.01
2252 7935 6.945435 TCATTACCTGCAAGAAAGGATTAACA 59.055 34.615 0.00 0.00 38.27 2.41
2253 7936 7.450014 TCATTACCTGCAAGAAAGGATTAACAA 59.550 33.333 0.00 0.00 38.27 2.83
2254 7937 5.712152 ACCTGCAAGAAAGGATTAACAAG 57.288 39.130 0.00 0.00 38.27 3.16
2255 7938 5.140454 ACCTGCAAGAAAGGATTAACAAGT 58.860 37.500 0.00 0.00 38.27 3.16
2256 7939 5.598417 ACCTGCAAGAAAGGATTAACAAGTT 59.402 36.000 0.00 0.00 38.27 2.66
2257 7940 5.922544 CCTGCAAGAAAGGATTAACAAGTTG 59.077 40.000 0.00 0.00 36.91 3.16
2258 7941 6.239008 CCTGCAAGAAAGGATTAACAAGTTGA 60.239 38.462 10.54 0.00 36.91 3.18
2259 7942 7.288810 TGCAAGAAAGGATTAACAAGTTGAT 57.711 32.000 10.54 0.00 0.00 2.57
2260 7943 7.370383 TGCAAGAAAGGATTAACAAGTTGATC 58.630 34.615 10.54 8.67 35.57 2.92
2275 7958 9.927081 AACAAGTTGATCCTAGATAATGGAATT 57.073 29.630 10.54 0.00 41.28 2.17
2276 7959 9.927081 ACAAGTTGATCCTAGATAATGGAATTT 57.073 29.630 10.54 0.00 37.87 1.82
2307 7990 9.421399 TCCAGAAGATAGAATGTATGTACAAGA 57.579 33.333 0.00 0.00 39.99 3.02
2315 7998 9.765795 ATAGAATGTATGTACAAGAAGTTAGGC 57.234 33.333 0.00 0.00 39.99 3.93
2316 7999 7.620880 AGAATGTATGTACAAGAAGTTAGGCA 58.379 34.615 0.00 0.00 39.99 4.75
2317 8000 8.267894 AGAATGTATGTACAAGAAGTTAGGCAT 58.732 33.333 0.00 0.00 39.99 4.40
2318 8001 9.542462 GAATGTATGTACAAGAAGTTAGGCATA 57.458 33.333 0.00 0.00 39.99 3.14
2319 8002 9.547753 AATGTATGTACAAGAAGTTAGGCATAG 57.452 33.333 0.00 0.00 39.99 2.23
2320 8003 8.074613 TGTATGTACAAGAAGTTAGGCATAGT 57.925 34.615 0.00 0.00 32.40 2.12
2321 8004 7.979537 TGTATGTACAAGAAGTTAGGCATAGTG 59.020 37.037 0.00 0.00 32.40 2.74
2322 8005 5.175859 TGTACAAGAAGTTAGGCATAGTGC 58.824 41.667 0.00 0.00 44.08 4.40
2323 8006 3.262420 ACAAGAAGTTAGGCATAGTGCG 58.738 45.455 0.00 0.00 46.21 5.34
2324 8007 3.056107 ACAAGAAGTTAGGCATAGTGCGA 60.056 43.478 0.00 0.00 46.21 5.10
2325 8008 3.887621 AGAAGTTAGGCATAGTGCGAA 57.112 42.857 0.00 0.00 46.21 4.70
2326 8009 3.522553 AGAAGTTAGGCATAGTGCGAAC 58.477 45.455 9.15 9.15 46.21 3.95
2327 8010 3.056107 AGAAGTTAGGCATAGTGCGAACA 60.056 43.478 15.87 0.00 46.21 3.18
2328 8011 2.618053 AGTTAGGCATAGTGCGAACAC 58.382 47.619 15.87 0.00 46.21 3.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.423538 GCAATTTTAGTCCCACGAGCAT 59.576 45.455 0.00 0.00 0.00 3.79
1 2 1.810151 GCAATTTTAGTCCCACGAGCA 59.190 47.619 0.00 0.00 0.00 4.26
2 3 1.132453 GGCAATTTTAGTCCCACGAGC 59.868 52.381 0.00 0.00 0.00 5.03
22 23 5.164100 CCAAGGCAAATCGAACGTTTTTATG 60.164 40.000 0.46 0.00 0.00 1.90
28 29 1.265905 GACCAAGGCAAATCGAACGTT 59.734 47.619 0.00 0.00 0.00 3.99
31 32 3.363341 TTTGACCAAGGCAAATCGAAC 57.637 42.857 0.00 0.00 30.87 3.95
56 57 7.666623 ACAGAATTGATAAATCCCAAACGTTT 58.333 30.769 7.96 7.96 0.00 3.60
75 76 5.694910 CGCGTGACCCTTAAATATACAGAAT 59.305 40.000 0.00 0.00 0.00 2.40
79 80 4.142204 TGACGCGTGACCCTTAAATATACA 60.142 41.667 20.70 0.00 0.00 2.29
82 83 3.118884 AGTGACGCGTGACCCTTAAATAT 60.119 43.478 25.18 0.00 0.00 1.28
96 97 2.578495 ACTTTTACTACGAGTGACGCG 58.422 47.619 7.28 7.28 46.94 6.01
100 101 5.291971 GGGTGAAACTTTTACTACGAGTGA 58.708 41.667 0.00 0.00 36.74 3.41
102 103 4.346127 AGGGGTGAAACTTTTACTACGAGT 59.654 41.667 0.00 0.00 36.74 4.18
103 104 4.689345 CAGGGGTGAAACTTTTACTACGAG 59.311 45.833 0.00 0.00 36.74 4.18
107 108 6.101588 ACCTTACAGGGGTGAAACTTTTACTA 59.898 38.462 0.00 0.00 40.58 1.82
109 110 5.135383 ACCTTACAGGGGTGAAACTTTTAC 58.865 41.667 0.00 0.00 40.58 2.01
122 123 5.359860 CCAAAGCCTAATAAACCTTACAGGG 59.640 44.000 0.00 0.00 40.58 4.45
123 124 5.949952 ACCAAAGCCTAATAAACCTTACAGG 59.050 40.000 0.00 0.00 42.49 4.00
142 143 5.755409 TCTCTAATCAGCACCTAACCAAA 57.245 39.130 0.00 0.00 0.00 3.28
193 194 3.181416 ACTCTAGCCGATCCCCTAAATCT 60.181 47.826 0.00 0.00 0.00 2.40
200 201 1.069935 GCAACTCTAGCCGATCCCC 59.930 63.158 0.00 0.00 0.00 4.81
237 238 2.050144 ACCCACTTGTCACTGTCTCAT 58.950 47.619 0.00 0.00 0.00 2.90
238 239 1.496060 ACCCACTTGTCACTGTCTCA 58.504 50.000 0.00 0.00 0.00 3.27
259 260 2.359850 CGGTGTGGTGATGGGTGG 60.360 66.667 0.00 0.00 0.00 4.61
313 314 3.316573 CTGCCTGGGAGGTTCCGAC 62.317 68.421 7.42 0.00 37.43 4.79
337 338 3.885484 ATCAAGTCAAACACTCTTGCG 57.115 42.857 0.00 0.00 38.56 4.85
347 348 7.557719 AGGAAAAGAGAGACAAATCAAGTCAAA 59.442 33.333 0.00 0.00 38.46 2.69
357 358 5.357032 GTGACCAAAGGAAAAGAGAGACAAA 59.643 40.000 0.00 0.00 0.00 2.83
361 362 3.458118 TGGTGACCAAAGGAAAAGAGAGA 59.542 43.478 0.00 0.00 0.00 3.10
362 363 3.820557 TGGTGACCAAAGGAAAAGAGAG 58.179 45.455 0.00 0.00 0.00 3.20
393 394 9.908152 GGCTTTCTTGTTTTTACTTACATACAT 57.092 29.630 0.00 0.00 0.00 2.29
402 403 4.879545 TGTCTCGGCTTTCTTGTTTTTACT 59.120 37.500 0.00 0.00 0.00 2.24
518 585 0.250124 TGGGCACAAACTCTACACCG 60.250 55.000 0.00 0.00 0.00 4.94
525 615 5.391312 AATGAAAGTATGGGCACAAACTC 57.609 39.130 0.00 0.00 0.00 3.01
532 622 4.613925 TGCAAAAATGAAAGTATGGGCA 57.386 36.364 0.00 0.00 0.00 5.36
573 721 4.017126 AGGTTGAGCATCGATATATCCGA 58.983 43.478 7.15 8.16 38.61 4.55
574 722 4.355437 GAGGTTGAGCATCGATATATCCG 58.645 47.826 7.15 3.12 38.61 4.18
584 732 1.014044 TTGACGCGAGGTTGAGCATC 61.014 55.000 15.93 0.00 0.00 3.91
588 736 1.428448 TCAATTGACGCGAGGTTGAG 58.572 50.000 15.93 0.00 0.00 3.02
590 738 2.900122 ATTCAATTGACGCGAGGTTG 57.100 45.000 15.93 12.22 0.00 3.77
690 917 6.087276 TCTGATCCGTCCCATATATAGGAA 57.913 41.667 1.02 0.00 32.81 3.36
746 978 0.819666 GAAGCGGGGATGGATGGAAC 60.820 60.000 0.00 0.00 0.00 3.62
758 1012 0.449388 GACAGCAGAATTGAAGCGGG 59.551 55.000 0.00 0.00 0.00 6.13
786 1111 3.873812 GGATGGGGGCGGTGTAGG 61.874 72.222 0.00 0.00 0.00 3.18
807 1132 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
828 1153 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
830 1155 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
831 1156 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
832 1157 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
833 1158 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
834 1159 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
835 1160 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
836 1161 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
837 1162 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
838 1163 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
839 1164 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
840 1165 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
841 1166 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
842 1167 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
843 1168 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
844 1169 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
845 1170 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
846 1171 5.136068 AGAGAGAGAGAGAGAGAGAGAGA 57.864 47.826 0.00 0.00 0.00 3.10
847 1172 4.892345 TGAGAGAGAGAGAGAGAGAGAGAG 59.108 50.000 0.00 0.00 0.00 3.20
848 1173 4.646945 GTGAGAGAGAGAGAGAGAGAGAGA 59.353 50.000 0.00 0.00 0.00 3.10
849 1174 4.403752 TGTGAGAGAGAGAGAGAGAGAGAG 59.596 50.000 0.00 0.00 0.00 3.20
850 1175 4.352893 TGTGAGAGAGAGAGAGAGAGAGA 58.647 47.826 0.00 0.00 0.00 3.10
851 1176 4.743057 TGTGAGAGAGAGAGAGAGAGAG 57.257 50.000 0.00 0.00 0.00 3.20
852 1177 4.716287 TGATGTGAGAGAGAGAGAGAGAGA 59.284 45.833 0.00 0.00 0.00 3.10
853 1178 5.027293 TGATGTGAGAGAGAGAGAGAGAG 57.973 47.826 0.00 0.00 0.00 3.20
854 1179 4.141642 CCTGATGTGAGAGAGAGAGAGAGA 60.142 50.000 0.00 0.00 0.00 3.10
855 1180 4.132336 CCTGATGTGAGAGAGAGAGAGAG 58.868 52.174 0.00 0.00 0.00 3.20
870 1195 0.977627 TGAGCCGATGTCCCTGATGT 60.978 55.000 0.00 0.00 0.00 3.06
884 1209 2.279784 CGGGATTCGAGCTGAGCC 60.280 66.667 0.00 0.00 42.43 4.70
930 1255 6.853362 CAGAAGACAAGTTAAGTTAGCTTTGC 59.147 38.462 9.08 5.11 36.22 3.68
955 1280 1.717194 TTTTATGACGACCGACTGCC 58.283 50.000 0.00 0.00 0.00 4.85
970 1295 2.010043 GCGATCGGCCTGGACTTTTTA 61.010 52.381 18.30 0.00 34.80 1.52
1032 1357 1.410517 ACAGGTATGGAGTGCATCTCG 59.589 52.381 0.00 0.00 43.60 4.04
1045 1370 2.212327 CCTCGAGGCCAACAGGTAT 58.788 57.895 20.67 0.00 0.00 2.73
1100 1425 1.799181 CGTTGTCCTCATCTACGCTGG 60.799 57.143 0.00 0.00 0.00 4.85
1107 1435 0.904865 TCCAGGCGTTGTCCTCATCT 60.905 55.000 0.00 0.00 33.25 2.90
1170 1498 3.583806 CATCCATGAGTTATCCTCTCGC 58.416 50.000 0.00 0.00 41.11 5.03
1171 1499 3.006217 TGCATCCATGAGTTATCCTCTCG 59.994 47.826 0.00 0.00 41.11 4.04
1199 1527 2.282251 ACCAGGCGACGTCAGAGA 60.282 61.111 17.16 0.00 0.00 3.10
1244 1653 3.064900 AGATGAACTGCAGGAAGGAAC 57.935 47.619 19.93 3.25 0.00 3.62
1290 4865 3.998672 GTTCCCTGTCCGTCGCCA 61.999 66.667 0.00 0.00 0.00 5.69
1337 4912 0.541863 ACACGATGGAATGGGAGTCC 59.458 55.000 0.00 0.00 35.55 3.85
1480 5056 9.903682 CAATTTCAATTCATAGTCAGAACACTT 57.096 29.630 0.00 0.00 0.00 3.16
1499 6450 8.114331 AGAACAAGTGCATATTCTCAATTTCA 57.886 30.769 0.00 0.00 0.00 2.69
1557 6961 1.614903 ACCACCGTCGTAGAAATCACA 59.385 47.619 0.00 0.00 39.69 3.58
1594 7001 2.359848 TCGCTTGGCTTCGTAGCTAATA 59.640 45.455 12.93 0.47 45.31 0.98
1699 7382 2.095059 GCATGTGTACTTGCCTCCTTTG 60.095 50.000 10.72 0.00 40.04 2.77
1765 7448 3.941483 AGTCTAATCAATGAGTTTGGCCG 59.059 43.478 0.00 0.00 35.92 6.13
1766 7449 4.943705 TGAGTCTAATCAATGAGTTTGGCC 59.056 41.667 0.00 0.00 35.92 5.36
1841 7524 7.448420 ACTCTATGACTATCCATGGAATTGTG 58.552 38.462 20.67 11.15 34.38 3.33
1912 7595 7.956328 AGTTAACCCTCCAAATTAGAATTCC 57.044 36.000 0.65 0.00 0.00 3.01
1937 7620 1.506028 TTAGGTGAAGGGCTTGGGGG 61.506 60.000 0.00 0.00 0.00 5.40
1938 7621 0.407918 TTTAGGTGAAGGGCTTGGGG 59.592 55.000 0.00 0.00 0.00 4.96
1939 7622 1.545841 GTTTAGGTGAAGGGCTTGGG 58.454 55.000 0.00 0.00 0.00 4.12
1940 7623 1.075536 AGGTTTAGGTGAAGGGCTTGG 59.924 52.381 0.00 0.00 0.00 3.61
1941 7624 2.586648 AGGTTTAGGTGAAGGGCTTG 57.413 50.000 0.00 0.00 0.00 4.01
1942 7625 3.527937 TCTAGGTTTAGGTGAAGGGCTT 58.472 45.455 0.00 0.00 0.00 4.35
1943 7626 3.200958 TCTAGGTTTAGGTGAAGGGCT 57.799 47.619 0.00 0.00 0.00 5.19
1944 7627 3.263681 AGTTCTAGGTTTAGGTGAAGGGC 59.736 47.826 0.00 0.00 0.00 5.19
1945 7628 4.081031 GGAGTTCTAGGTTTAGGTGAAGGG 60.081 50.000 0.00 0.00 0.00 3.95
1946 7629 4.778427 AGGAGTTCTAGGTTTAGGTGAAGG 59.222 45.833 0.00 0.00 0.00 3.46
1947 7630 5.480772 TGAGGAGTTCTAGGTTTAGGTGAAG 59.519 44.000 0.00 0.00 0.00 3.02
1948 7631 5.399991 TGAGGAGTTCTAGGTTTAGGTGAA 58.600 41.667 0.00 0.00 0.00 3.18
1949 7632 5.006896 TGAGGAGTTCTAGGTTTAGGTGA 57.993 43.478 0.00 0.00 0.00 4.02
1950 7633 5.740290 TTGAGGAGTTCTAGGTTTAGGTG 57.260 43.478 0.00 0.00 0.00 4.00
1951 7634 6.329460 AGTTTTGAGGAGTTCTAGGTTTAGGT 59.671 38.462 0.00 0.00 0.00 3.08
1952 7635 6.770542 AGTTTTGAGGAGTTCTAGGTTTAGG 58.229 40.000 0.00 0.00 0.00 2.69
1953 7636 7.672240 AGAGTTTTGAGGAGTTCTAGGTTTAG 58.328 38.462 0.00 0.00 0.00 1.85
1954 7637 7.289317 TGAGAGTTTTGAGGAGTTCTAGGTTTA 59.711 37.037 0.00 0.00 0.00 2.01
1955 7638 6.099845 TGAGAGTTTTGAGGAGTTCTAGGTTT 59.900 38.462 0.00 0.00 0.00 3.27
1956 7639 5.602978 TGAGAGTTTTGAGGAGTTCTAGGTT 59.397 40.000 0.00 0.00 0.00 3.50
1957 7640 5.148502 TGAGAGTTTTGAGGAGTTCTAGGT 58.851 41.667 0.00 0.00 0.00 3.08
1958 7641 5.730296 TGAGAGTTTTGAGGAGTTCTAGG 57.270 43.478 0.00 0.00 0.00 3.02
1959 7642 9.712305 TTTTATGAGAGTTTTGAGGAGTTCTAG 57.288 33.333 0.00 0.00 0.00 2.43
1961 7644 8.980481 TTTTTATGAGAGTTTTGAGGAGTTCT 57.020 30.769 0.00 0.00 0.00 3.01
1992 7675 7.816945 AGAGATGGCAATAAAAATTTGTTCG 57.183 32.000 0.00 0.00 0.00 3.95
2022 7705 7.148590 GGGCATTGTTACAATTTTTCACTCATC 60.149 37.037 7.97 0.00 0.00 2.92
2034 7717 3.520569 GAAATGCGGGCATTGTTACAAT 58.479 40.909 18.65 4.56 44.86 2.71
2057 7740 8.825667 TGAGAGCCAACAAAATTTATTAAACC 57.174 30.769 0.00 0.00 0.00 3.27
2067 7750 8.854117 GGATCTATTTATGAGAGCCAACAAAAT 58.146 33.333 2.15 0.00 46.69 1.82
2112 7795 1.154205 CCGCCTTGTCTATTGCTCGG 61.154 60.000 0.00 0.00 0.00 4.63
2191 7874 1.876497 ATTGCCGCCCAACATGTGTC 61.876 55.000 0.00 0.00 35.99 3.67
2197 7880 1.318886 CCATACATTGCCGCCCAACA 61.319 55.000 0.00 0.00 35.99 3.33
2232 7915 5.140454 ACTTGTTAATCCTTTCTTGCAGGT 58.860 37.500 0.00 0.00 32.59 4.00
2233 7916 5.712152 ACTTGTTAATCCTTTCTTGCAGG 57.288 39.130 0.00 0.00 0.00 4.85
2234 7917 6.738114 TCAACTTGTTAATCCTTTCTTGCAG 58.262 36.000 0.00 0.00 0.00 4.41
2235 7918 6.707440 TCAACTTGTTAATCCTTTCTTGCA 57.293 33.333 0.00 0.00 0.00 4.08
2236 7919 6.808704 GGATCAACTTGTTAATCCTTTCTTGC 59.191 38.462 8.12 0.00 35.75 4.01
2237 7920 8.115490 AGGATCAACTTGTTAATCCTTTCTTG 57.885 34.615 11.41 0.00 44.41 3.02
2238 7921 9.454859 CTAGGATCAACTTGTTAATCCTTTCTT 57.545 33.333 19.79 2.57 44.41 2.52
2239 7922 8.826765 TCTAGGATCAACTTGTTAATCCTTTCT 58.173 33.333 19.79 2.88 44.41 2.52
2240 7923 9.620259 ATCTAGGATCAACTTGTTAATCCTTTC 57.380 33.333 19.79 0.00 44.41 2.62
2249 7932 9.927081 AATTCCATTATCTAGGATCAACTTGTT 57.073 29.630 0.00 0.00 33.10 2.83
2250 7933 9.927081 AAATTCCATTATCTAGGATCAACTTGT 57.073 29.630 0.00 0.00 33.10 3.16
2281 7964 9.421399 TCTTGTACATACATTCTATCTTCTGGA 57.579 33.333 0.00 0.00 35.89 3.86
2289 7972 9.765795 GCCTAACTTCTTGTACATACATTCTAT 57.234 33.333 0.00 0.00 35.89 1.98
2290 7973 8.755028 TGCCTAACTTCTTGTACATACATTCTA 58.245 33.333 0.00 0.00 35.89 2.10
2291 7974 7.620880 TGCCTAACTTCTTGTACATACATTCT 58.379 34.615 0.00 0.00 35.89 2.40
2292 7975 7.843490 TGCCTAACTTCTTGTACATACATTC 57.157 36.000 0.00 0.00 35.89 2.67
2293 7976 9.547753 CTATGCCTAACTTCTTGTACATACATT 57.452 33.333 0.00 0.00 35.89 2.71
2294 7977 8.705594 ACTATGCCTAACTTCTTGTACATACAT 58.294 33.333 0.00 0.00 35.89 2.29
2295 7978 7.979537 CACTATGCCTAACTTCTTGTACATACA 59.020 37.037 0.00 0.00 0.00 2.29
2296 7979 7.042658 GCACTATGCCTAACTTCTTGTACATAC 60.043 40.741 0.00 0.00 37.42 2.39
2297 7980 6.984474 GCACTATGCCTAACTTCTTGTACATA 59.016 38.462 0.00 0.00 37.42 2.29
2298 7981 5.817816 GCACTATGCCTAACTTCTTGTACAT 59.182 40.000 0.00 0.00 37.42 2.29
2299 7982 5.175859 GCACTATGCCTAACTTCTTGTACA 58.824 41.667 0.00 0.00 37.42 2.90
2300 7983 4.267928 CGCACTATGCCTAACTTCTTGTAC 59.732 45.833 0.00 0.00 41.12 2.90
2301 7984 4.158949 TCGCACTATGCCTAACTTCTTGTA 59.841 41.667 0.00 0.00 41.12 2.41
2302 7985 3.056107 TCGCACTATGCCTAACTTCTTGT 60.056 43.478 0.00 0.00 41.12 3.16
2303 7986 3.521560 TCGCACTATGCCTAACTTCTTG 58.478 45.455 0.00 0.00 41.12 3.02
2304 7987 3.887621 TCGCACTATGCCTAACTTCTT 57.112 42.857 0.00 0.00 41.12 2.52
2305 7988 3.056107 TGTTCGCACTATGCCTAACTTCT 60.056 43.478 12.31 0.00 41.12 2.85
2306 7989 3.062234 GTGTTCGCACTATGCCTAACTTC 59.938 47.826 12.31 5.27 44.38 3.01
2307 7990 3.000727 GTGTTCGCACTATGCCTAACTT 58.999 45.455 12.31 0.00 44.38 2.66
2308 7991 2.618053 GTGTTCGCACTATGCCTAACT 58.382 47.619 12.31 0.00 44.38 2.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.