Multiple sequence alignment - TraesCS2D01G567700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G567700 chr2D 100.000 9891 0 0 1 9891 636009233 636019123 0.000000e+00 18266.0
1 TraesCS2D01G567700 chr2D 85.315 1144 131 17 2857 3980 636009936 636011062 0.000000e+00 1147.0
2 TraesCS2D01G567700 chr2D 85.315 1144 131 17 704 1830 636012089 636013212 0.000000e+00 1147.0
3 TraesCS2D01G567700 chr2D 94.949 396 15 4 9493 9887 18935861 18936252 5.080000e-172 616.0
4 TraesCS2D01G567700 chr2D 94.458 397 17 4 9493 9888 18841899 18842291 3.060000e-169 606.0
5 TraesCS2D01G567700 chr2D 93.797 403 16 7 9489 9891 614888012 614888405 1.840000e-166 597.0
6 TraesCS2D01G567700 chr2D 77.041 588 116 15 5932 6512 636014256 636014831 4.460000e-83 320.0
7 TraesCS2D01G567700 chr2D 77.002 587 118 14 5024 5599 636015164 636015744 4.460000e-83 320.0
8 TraesCS2D01G567700 chr2D 81.481 351 59 5 1 347 135539454 135539802 5.850000e-72 283.0
9 TraesCS2D01G567700 chr2D 89.011 91 7 1 4623 4710 636011718 636011808 1.050000e-19 110.0
10 TraesCS2D01G567700 chr2D 89.011 91 7 1 2486 2576 636013855 636013942 1.050000e-19 110.0
11 TraesCS2D01G567700 chr2D 92.857 56 4 0 9437 9492 368559434 368559489 2.290000e-11 82.4
12 TraesCS2D01G567700 chr2B 93.374 4467 217 42 611 5032 794072862 794077294 0.000000e+00 6536.0
13 TraesCS2D01G567700 chr2B 92.581 3464 200 23 6043 9485 794079545 794082972 0.000000e+00 4920.0
14 TraesCS2D01G567700 chr2B 92.068 996 73 5 5057 6049 794077281 794078273 0.000000e+00 1397.0
15 TraesCS2D01G567700 chr2B 85.714 1148 125 21 2857 3982 794072953 794074083 0.000000e+00 1175.0
16 TraesCS2D01G567700 chr2B 85.428 1146 119 29 704 1830 794075114 794076230 0.000000e+00 1147.0
17 TraesCS2D01G567700 chr2B 81.403 941 148 17 7218 8151 794072899 794073819 0.000000e+00 743.0
18 TraesCS2D01G567700 chr2B 81.457 906 140 16 2842 3721 794080733 794081636 0.000000e+00 717.0
19 TraesCS2D01G567700 chr2B 79.180 951 167 20 647 1570 794080690 794081636 1.810000e-176 630.0
20 TraesCS2D01G567700 chr2B 89.617 366 36 2 3971 4334 329777364 329776999 1.950000e-126 464.0
21 TraesCS2D01G567700 chr2B 82.759 319 34 14 4331 4631 794074409 794074724 2.120000e-66 265.0
22 TraesCS2D01G567700 chr2B 74.473 474 103 13 5136 5599 794079545 794080010 1.310000e-43 189.0
23 TraesCS2D01G567700 chr2A 92.183 3902 224 42 2787 6649 761217039 761213180 0.000000e+00 5441.0
24 TraesCS2D01G567700 chr2A 92.972 2433 117 25 104 2514 761219434 761217034 0.000000e+00 3496.0
25 TraesCS2D01G567700 chr2A 93.448 2152 120 10 7350 9484 761212263 761210116 0.000000e+00 3173.0
26 TraesCS2D01G567700 chr2A 85.276 1141 138 22 710 1830 761216961 761215831 0.000000e+00 1149.0
27 TraesCS2D01G567700 chr2A 84.468 1146 116 35 2857 3980 761218835 761217730 0.000000e+00 1074.0
28 TraesCS2D01G567700 chr2A 94.658 468 24 1 6781 7248 761213181 761212715 0.000000e+00 725.0
29 TraesCS2D01G567700 chr2A 82.555 814 120 13 2926 3720 761212263 761211453 0.000000e+00 697.0
30 TraesCS2D01G567700 chr2A 79.779 816 138 16 776 1569 761212263 761211453 1.440000e-157 568.0
31 TraesCS2D01G567700 chr2A 77.244 624 124 16 1 618 143525005 143525616 5.680000e-92 350.0
32 TraesCS2D01G567700 chr2A 80.851 188 33 3 4331 4517 761210877 761210692 2.880000e-30 145.0
33 TraesCS2D01G567700 chr2A 79.592 196 31 8 3792 3980 761211414 761211221 2.240000e-26 132.0
34 TraesCS2D01G567700 chr5D 95.970 397 10 4 9492 9888 30749326 30749716 3.010000e-179 640.0
35 TraesCS2D01G567700 chr5D 93.484 399 17 6 9493 9891 385266152 385265763 1.430000e-162 584.0
36 TraesCS2D01G567700 chr5D 90.859 361 28 5 3977 4334 506302451 506302093 6.950000e-131 479.0
37 TraesCS2D01G567700 chr5D 83.591 323 46 6 4698 5018 119915778 119916095 7.510000e-76 296.0
38 TraesCS2D01G567700 chr3D 94.486 399 17 4 9493 9889 533129358 533128963 2.360000e-170 610.0
39 TraesCS2D01G567700 chr3D 94.030 402 17 5 9492 9891 256431048 256430652 3.950000e-168 603.0
40 TraesCS2D01G567700 chr3D 93.687 396 19 5 9493 9888 578304671 578304282 1.110000e-163 588.0
41 TraesCS2D01G567700 chr3D 80.880 659 100 20 1 643 231737446 231738094 6.900000e-136 496.0
42 TraesCS2D01G567700 chr3D 89.560 364 36 2 3972 4334 180407413 180407775 2.520000e-125 460.0
43 TraesCS2D01G567700 chr3D 78.473 655 105 18 1 644 83998795 83999424 7.200000e-106 396.0
44 TraesCS2D01G567700 chr3D 87.879 66 6 2 9428 9492 279206367 279206431 1.070000e-09 76.8
45 TraesCS2D01G567700 chr3D 97.222 36 1 0 4562 4597 399272609 399272644 2.980000e-05 62.1
46 TraesCS2D01G567700 chr1D 93.924 395 17 5 9492 9886 227288012 227288399 3.080000e-164 590.0
47 TraesCS2D01G567700 chr1D 91.228 57 1 3 4961 5017 405407172 405407120 3.830000e-09 75.0
48 TraesCS2D01G567700 chr3B 80.606 660 102 21 1 643 284014770 284015420 4.150000e-133 486.0
49 TraesCS2D01G567700 chr3B 85.113 309 40 4 4703 5008 711274024 711273719 2.680000e-80 311.0
50 TraesCS2D01G567700 chr1B 90.883 351 31 1 3978 4327 473051759 473051409 4.180000e-128 470.0
51 TraesCS2D01G567700 chr6B 90.083 363 33 3 3975 4334 612490254 612490616 1.500000e-127 468.0
52 TraesCS2D01G567700 chr6B 80.952 126 17 7 517 640 459143603 459143723 1.060000e-14 93.5
53 TraesCS2D01G567700 chr4B 89.218 371 34 6 3969 4334 289257509 289257878 9.050000e-125 459.0
54 TraesCS2D01G567700 chr4B 85.016 307 42 2 4710 5015 263148248 263147945 9.650000e-80 309.0
55 TraesCS2D01G567700 chr4B 84.848 297 40 4 4723 5018 147325312 147325020 2.700000e-75 294.0
56 TraesCS2D01G567700 chr7B 88.710 372 37 5 3966 4334 217332056 217331687 5.450000e-122 449.0
57 TraesCS2D01G567700 chr7B 86.174 311 37 4 4700 5009 88770750 88771055 2.060000e-86 331.0
58 TraesCS2D01G567700 chr7B 73.900 1000 184 49 8452 9414 107336855 107335896 7.410000e-86 329.0
59 TraesCS2D01G567700 chr7B 75.740 676 120 33 1 644 228014982 228014319 5.810000e-77 300.0
60 TraesCS2D01G567700 chr7B 80.952 357 60 6 1 352 215829840 215830193 9.790000e-70 276.0
61 TraesCS2D01G567700 chr7B 74.408 422 79 24 238 641 677116427 677116837 4.780000e-33 154.0
62 TraesCS2D01G567700 chr6A 79.348 644 117 12 3 634 454395553 454396192 1.180000e-118 438.0
63 TraesCS2D01G567700 chr7A 75.551 998 184 38 8452 9414 145033113 145032141 4.240000e-118 436.0
64 TraesCS2D01G567700 chr7A 78.148 540 97 15 118 645 591938700 591938170 3.450000e-84 324.0
65 TraesCS2D01G567700 chr7A 92.857 56 4 0 9437 9492 254394243 254394188 2.290000e-11 82.4
66 TraesCS2D01G567700 chr7D 75.964 674 122 30 1 644 251039407 251038744 2.680000e-80 311.0
67 TraesCS2D01G567700 chr7D 82.595 316 44 7 4705 5017 614178093 614177786 1.640000e-67 268.0
68 TraesCS2D01G567700 chr4D 83.596 317 45 6 4704 5018 48725433 48725744 3.490000e-74 291.0
69 TraesCS2D01G567700 chr5A 82.051 312 49 6 35 341 313910951 313911260 9.860000e-65 259.0
70 TraesCS2D01G567700 chr1A 88.000 100 12 0 546 645 91405182 91405281 1.750000e-22 119.0
71 TraesCS2D01G567700 chr1A 91.379 58 5 0 9435 9492 247306261 247306204 8.240000e-11 80.5
72 TraesCS2D01G567700 chr3A 91.803 61 5 0 9436 9496 244557248 244557188 1.770000e-12 86.1
73 TraesCS2D01G567700 chr3A 92.857 56 4 0 9437 9492 142010274 142010329 2.290000e-11 82.4
74 TraesCS2D01G567700 chr4A 88.060 67 6 2 9427 9492 453322633 453322698 2.960000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G567700 chr2D 636009233 636019123 9890 False 18266.000000 18266 100.000000 1 9891 1 chr2D.!!$F6 9890
1 TraesCS2D01G567700 chr2D 636009936 636015744 5808 False 525.666667 1147 83.782500 704 6512 6 chr2D.!!$F7 5808
2 TraesCS2D01G567700 chr2B 794072862 794077294 4432 False 6536.000000 6536 93.374000 611 5032 1 chr2B.!!$F1 4421
3 TraesCS2D01G567700 chr2B 794072899 794082972 10073 False 1242.555556 4920 83.895889 647 9485 9 chr2B.!!$F2 8838
4 TraesCS2D01G567700 chr2A 761210116 761219434 9318 True 1660.000000 5441 86.578200 104 9484 10 chr2A.!!$R1 9380
5 TraesCS2D01G567700 chr2A 143525005 143525616 611 False 350.000000 350 77.244000 1 618 1 chr2A.!!$F1 617
6 TraesCS2D01G567700 chr3D 231737446 231738094 648 False 496.000000 496 80.880000 1 643 1 chr3D.!!$F3 642
7 TraesCS2D01G567700 chr3D 83998795 83999424 629 False 396.000000 396 78.473000 1 644 1 chr3D.!!$F1 643
8 TraesCS2D01G567700 chr3B 284014770 284015420 650 False 486.000000 486 80.606000 1 643 1 chr3B.!!$F1 642
9 TraesCS2D01G567700 chr7B 107335896 107336855 959 True 329.000000 329 73.900000 8452 9414 1 chr7B.!!$R1 962
10 TraesCS2D01G567700 chr7B 228014319 228014982 663 True 300.000000 300 75.740000 1 644 1 chr7B.!!$R3 643
11 TraesCS2D01G567700 chr6A 454395553 454396192 639 False 438.000000 438 79.348000 3 634 1 chr6A.!!$F1 631
12 TraesCS2D01G567700 chr7A 145032141 145033113 972 True 436.000000 436 75.551000 8452 9414 1 chr7A.!!$R1 962
13 TraesCS2D01G567700 chr7A 591938170 591938700 530 True 324.000000 324 78.148000 118 645 1 chr7A.!!$R3 527
14 TraesCS2D01G567700 chr7D 251038744 251039407 663 True 311.000000 311 75.964000 1 644 1 chr7D.!!$R1 643

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
531 574 1.454847 TCGCTTTGTTTGCTGGGGT 60.455 52.632 0.00 0.00 0.00 4.95 F
698 744 2.284754 TGGCTAGCCATGACACAAAA 57.715 45.000 32.88 5.59 41.89 2.44 F
4408 4527 2.972713 AGTACTTCAAGAGGCCAGTGAA 59.027 45.455 5.01 10.50 0.00 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
4408 4527 8.556213 TGTAGTGTCGCCTTAGATTTATTTTT 57.444 30.769 0.00 0.0 0.00 1.94 R
6519 7945 3.401033 TGTCATCCTCGATTGTGTTGT 57.599 42.857 0.00 0.0 0.00 3.32 R
9612 11530 0.036164 TTGTCTGGTGCGCCATTAGT 59.964 50.000 21.54 0.0 45.05 2.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 8.725405 TTGTTGACGCTAAGGATAAAATGATA 57.275 30.769 0.00 0.00 0.00 2.15
29 30 6.423905 TGACGCTAAGGATAAAATGATAGTGC 59.576 38.462 0.00 0.00 0.00 4.40
42 46 4.257267 TGATAGTGCCTCGTCATATTGG 57.743 45.455 0.00 0.00 0.00 3.16
369 388 8.624367 TTACCGAAAACCAATATTTTCTCTGA 57.376 30.769 8.79 0.00 43.47 3.27
378 397 1.772836 ATTTTCTCTGATGCCCTGCC 58.227 50.000 0.00 0.00 0.00 4.85
515 556 2.633657 GTGTGCAAGTGCCACTCG 59.366 61.111 0.00 0.00 41.18 4.18
531 574 1.454847 TCGCTTTGTTTGCTGGGGT 60.455 52.632 0.00 0.00 0.00 4.95
606 651 4.719773 TGCTAGGTTACATCACCCTTACAT 59.280 41.667 0.00 0.00 37.58 2.29
698 744 2.284754 TGGCTAGCCATGACACAAAA 57.715 45.000 32.88 5.59 41.89 2.44
4408 4527 2.972713 AGTACTTCAAGAGGCCAGTGAA 59.027 45.455 5.01 10.50 0.00 3.18
6519 7945 6.582677 CCAACTATTGGTGTTTCATAACCA 57.417 37.500 0.00 0.00 45.93 3.67
6520 7946 6.386654 CCAACTATTGGTGTTTCATAACCAC 58.613 40.000 0.00 0.00 46.04 4.16
6521 7947 6.015856 CCAACTATTGGTGTTTCATAACCACA 60.016 38.462 0.00 0.00 46.04 4.17
6523 7949 6.977213 ACTATTGGTGTTTCATAACCACAAC 58.023 36.000 0.00 0.00 46.04 3.32
6524 7950 5.860941 ATTGGTGTTTCATAACCACAACA 57.139 34.783 0.00 0.00 46.04 3.33
6525 7951 4.640789 TGGTGTTTCATAACCACAACAC 57.359 40.909 5.62 5.62 45.50 3.32
6529 7955 6.747659 GTGTTTCATAACCACAACACAATC 57.252 37.500 8.74 0.00 45.52 2.67
6559 7986 2.817258 CAAATTTGTTCAGAGGGGCGTA 59.183 45.455 10.15 0.00 0.00 4.42
6560 7987 3.366052 AATTTGTTCAGAGGGGCGTAT 57.634 42.857 0.00 0.00 0.00 3.06
6592 8019 5.380900 TGTCGAGATGGTAAGATGAGAGAT 58.619 41.667 0.00 0.00 0.00 2.75
6650 8077 4.101741 AGGTAAGACCATACTCTTGCATCC 59.898 45.833 0.00 0.00 41.95 3.51
6656 8083 3.521126 ACCATACTCTTGCATCCAGTTCT 59.479 43.478 0.00 0.00 0.00 3.01
6682 8109 1.526575 CTTGAGTGCCCGCCAACAAT 61.527 55.000 0.00 0.00 0.00 2.71
6693 8120 3.569277 CCCGCCAACAATCATGATAATCA 59.431 43.478 9.04 0.00 0.00 2.57
6753 8180 3.582208 GCAGTGGAGGATAGGATGAAGAT 59.418 47.826 0.00 0.00 0.00 2.40
6863 8290 2.232941 CGAGCTAGGGTTACTTGGTTCA 59.767 50.000 0.00 0.00 32.91 3.18
6905 8332 2.283529 GCCAGGAGGTCTCGTTGGA 61.284 63.158 18.26 0.00 37.25 3.53
6922 8349 3.769189 TGGACCATGTCTTAGGAGGTA 57.231 47.619 0.00 0.00 31.57 3.08
6946 8373 3.378112 TCTTTGCTTGTGTGGAAAGTCAG 59.622 43.478 8.00 0.00 43.03 3.51
6988 8415 1.512926 CTTGTTCTGTCCCAAGGTCG 58.487 55.000 0.00 0.00 35.51 4.79
7016 8443 0.035439 CTGGGATTGGTACGGTGCTT 60.035 55.000 0.00 0.00 0.00 3.91
7033 8460 0.833949 CTTCCAGAGCCCTTAGGTCC 59.166 60.000 0.00 0.00 44.46 4.46
7056 8483 1.342374 GGGACCCAAAGCTCCATTCAT 60.342 52.381 5.33 0.00 0.00 2.57
7102 8529 6.811170 ACGATGCATTGGAAATTTTATCGTTT 59.189 30.769 18.31 0.00 44.55 3.60
7284 8716 5.764686 TGACACAAGCATTATCACAGAAAGT 59.235 36.000 0.00 0.00 0.00 2.66
7340 8772 8.349245 TGGTGATAAGTATGAAACAACAACAAG 58.651 33.333 0.00 0.00 0.00 3.16
7488 9349 6.721208 ACAGTTGGATTCCACTTTCAATATGT 59.279 34.615 4.45 0.00 30.78 2.29
7600 9484 1.746220 CGAGAGTTGGTGTAGAGGAGG 59.254 57.143 0.00 0.00 0.00 4.30
7617 9501 0.994247 AGGCAGGGTCAATCATCACA 59.006 50.000 0.00 0.00 0.00 3.58
7643 9527 3.219281 TCAACAACAAGGAAAGTAGCCC 58.781 45.455 0.00 0.00 0.00 5.19
7715 9599 1.596260 CATGCAGTACCATTGCGAGAG 59.404 52.381 0.00 0.00 44.40 3.20
7734 9618 4.194640 AGAGCATGCAACAGGTAATGTAG 58.805 43.478 21.98 0.00 43.00 2.74
7873 9757 1.073923 AGTGGCACCAAAGGAGTAAGG 59.926 52.381 15.27 0.00 0.00 2.69
7891 9775 1.499007 AGGGGTCACCAACTCACAATT 59.501 47.619 0.00 0.00 43.89 2.32
7893 9777 2.698274 GGGGTCACCAACTCACAATTTT 59.302 45.455 0.00 0.00 39.85 1.82
7980 9865 4.402829 ACGTGATAGCTATGTCAGAGGAT 58.597 43.478 11.94 0.00 0.00 3.24
8018 9903 1.678627 AGAGAACGAGATGTCCATCCG 59.321 52.381 13.15 13.15 38.58 4.18
8144 10029 8.177663 CACAAGTGTACCAATTAGTCATCATTC 58.822 37.037 0.00 0.00 0.00 2.67
8395 10283 8.871862 TCACAATAAAATGTTATGATTGCAAGC 58.128 29.630 7.99 7.99 31.98 4.01
8493 10381 9.236006 ACTAGAATGAGTGCAAATGTTTCTATT 57.764 29.630 0.00 0.00 0.00 1.73
8604 10507 9.802039 AACCATGTTTATTAGGTAGAAGTTTCA 57.198 29.630 0.00 0.00 33.15 2.69
8696 10602 4.938226 GGAACTTTCTCGATGGATTGAGTT 59.062 41.667 4.17 0.00 39.01 3.01
8776 10682 2.252260 CAGGTTTCAAGCCACGCG 59.748 61.111 3.53 3.53 0.00 6.01
8900 10809 1.520174 CTAGTGCATGACAATCTCGCG 59.480 52.381 0.00 0.00 0.00 5.87
8922 10831 3.122727 TTGGGGACGTTGACCACCC 62.123 63.158 6.34 2.93 41.84 4.61
8936 10845 1.214923 ACCACCCGAACCCAAGTTTTA 59.785 47.619 0.00 0.00 35.94 1.52
9030 10942 6.003950 GGGCTTGGCATCTAAGAACAATATA 58.996 40.000 0.00 0.00 0.00 0.86
9240 11152 9.462174 TGCATTGACAACTTGTAAATTTTAGAG 57.538 29.630 2.06 0.00 29.02 2.43
9365 11281 5.618056 TCATTTTGCATTCTCTGAGACAC 57.382 39.130 6.92 0.47 0.00 3.67
9367 11283 2.479566 TTGCATTCTCTGAGACACCC 57.520 50.000 6.92 0.00 0.00 4.61
9509 11427 7.797038 TTTTTCACACTACTAGGAAAAGGAC 57.203 36.000 0.00 0.00 39.53 3.85
9510 11428 6.742559 TTTCACACTACTAGGAAAAGGACT 57.257 37.500 0.00 0.00 0.00 3.85
9511 11429 7.844493 TTTCACACTACTAGGAAAAGGACTA 57.156 36.000 0.00 0.00 0.00 2.59
9512 11430 8.431910 TTTCACACTACTAGGAAAAGGACTAT 57.568 34.615 0.00 0.00 0.00 2.12
9513 11431 9.537852 TTTCACACTACTAGGAAAAGGACTATA 57.462 33.333 0.00 0.00 0.00 1.31
9514 11432 8.749026 TCACACTACTAGGAAAAGGACTATAG 57.251 38.462 0.00 0.00 0.00 1.31
9515 11433 8.554870 TCACACTACTAGGAAAAGGACTATAGA 58.445 37.037 6.78 0.00 0.00 1.98
9516 11434 9.357161 CACACTACTAGGAAAAGGACTATAGAT 57.643 37.037 6.78 0.00 0.00 1.98
9517 11435 9.357161 ACACTACTAGGAAAAGGACTATAGATG 57.643 37.037 6.78 0.00 0.00 2.90
9518 11436 8.798402 CACTACTAGGAAAAGGACTATAGATGG 58.202 40.741 6.78 0.00 0.00 3.51
9519 11437 8.734763 ACTACTAGGAAAAGGACTATAGATGGA 58.265 37.037 6.78 0.00 0.00 3.41
9520 11438 9.589461 CTACTAGGAAAAGGACTATAGATGGAA 57.411 37.037 6.78 0.00 0.00 3.53
9522 11440 8.875168 ACTAGGAAAAGGACTATAGATGGAATG 58.125 37.037 6.78 0.00 0.00 2.67
9523 11441 7.084268 AGGAAAAGGACTATAGATGGAATGG 57.916 40.000 6.78 0.00 0.00 3.16
9524 11442 5.707764 GGAAAAGGACTATAGATGGAATGGC 59.292 44.000 6.78 0.00 0.00 4.40
9525 11443 4.917906 AAGGACTATAGATGGAATGGCC 57.082 45.455 6.78 0.00 37.10 5.36
9542 11460 3.384816 CCACTAATGGCGCATCAGA 57.615 52.632 10.83 0.00 39.82 3.27
9543 11461 0.940126 CCACTAATGGCGCATCAGAC 59.060 55.000 10.83 0.00 39.82 3.51
9544 11462 1.655484 CACTAATGGCGCATCAGACA 58.345 50.000 10.83 0.00 0.00 3.41
9545 11463 2.216046 CACTAATGGCGCATCAGACAT 58.784 47.619 10.83 0.00 42.70 3.06
9547 11465 3.065786 CACTAATGGCGCATCAGACATTT 59.934 43.478 10.83 0.00 46.94 2.32
9548 11466 2.572191 AATGGCGCATCAGACATTTG 57.428 45.000 10.83 0.00 46.94 2.32
9549 11467 0.742505 ATGGCGCATCAGACATTTGG 59.257 50.000 10.83 0.00 36.18 3.28
9550 11468 0.608856 TGGCGCATCAGACATTTGGT 60.609 50.000 10.83 0.00 0.00 3.67
9551 11469 0.179156 GGCGCATCAGACATTTGGTG 60.179 55.000 10.83 0.00 32.26 4.17
9553 11471 3.317608 GCATCAGACATTTGGTGCG 57.682 52.632 0.00 0.00 44.40 5.34
9554 11472 0.799534 GCATCAGACATTTGGTGCGC 60.800 55.000 0.00 0.00 44.40 6.09
9555 11473 0.179156 CATCAGACATTTGGTGCGCC 60.179 55.000 10.11 10.11 0.00 6.53
9556 11474 0.608856 ATCAGACATTTGGTGCGCCA 60.609 50.000 16.89 16.89 44.38 5.69
9557 11475 0.608856 TCAGACATTTGGTGCGCCAT 60.609 50.000 21.95 4.46 45.56 4.40
9558 11476 0.244450 CAGACATTTGGTGCGCCATT 59.756 50.000 21.95 8.23 45.56 3.16
9559 11477 0.244450 AGACATTTGGTGCGCCATTG 59.756 50.000 21.95 21.87 45.56 2.82
9560 11478 1.353609 GACATTTGGTGCGCCATTGC 61.354 55.000 21.95 12.73 45.56 3.56
9561 11479 1.079681 CATTTGGTGCGCCATTGCT 60.080 52.632 21.95 2.02 45.56 3.91
9562 11480 0.173029 CATTTGGTGCGCCATTGCTA 59.827 50.000 21.95 0.61 45.56 3.49
9563 11481 1.113788 ATTTGGTGCGCCATTGCTAT 58.886 45.000 21.95 6.21 45.56 2.97
9564 11482 0.173029 TTTGGTGCGCCATTGCTATG 59.827 50.000 21.95 0.68 45.56 2.23
9565 11483 0.964860 TTGGTGCGCCATTGCTATGT 60.965 50.000 21.95 0.00 45.56 2.29
9566 11484 0.107459 TGGTGCGCCATTGCTATGTA 60.107 50.000 16.89 0.00 40.46 2.29
9567 11485 0.588252 GGTGCGCCATTGCTATGTAG 59.412 55.000 12.58 2.14 35.36 2.74
9568 11486 3.323268 GGTGCGCCATTGCTATGTAGC 62.323 57.143 12.58 14.59 41.23 3.58
9596 11514 2.827190 CATCTGCTGGTGCGCCAT 60.827 61.111 21.54 0.38 45.05 4.40
9597 11515 2.044650 ATCTGCTGGTGCGCCATT 60.045 55.556 21.54 0.00 45.05 3.16
9598 11516 1.096967 CATCTGCTGGTGCGCCATTA 61.097 55.000 21.54 10.90 45.05 1.90
9599 11517 0.816825 ATCTGCTGGTGCGCCATTAG 60.817 55.000 21.54 19.89 45.05 1.73
9600 11518 1.746615 CTGCTGGTGCGCCATTAGT 60.747 57.895 21.54 0.00 45.05 2.24
9601 11519 1.985447 CTGCTGGTGCGCCATTAGTG 61.985 60.000 21.54 8.92 45.05 2.74
9602 11520 2.040544 GCTGGTGCGCCATTAGTGT 61.041 57.895 21.54 0.00 45.05 3.55
9603 11521 1.796151 CTGGTGCGCCATTAGTGTG 59.204 57.895 21.54 1.70 45.05 3.82
9604 11522 0.673333 CTGGTGCGCCATTAGTGTGA 60.673 55.000 21.54 0.00 45.05 3.58
9605 11523 0.250510 TGGTGCGCCATTAGTGTGAA 60.251 50.000 16.89 0.00 40.46 3.18
9606 11524 0.878416 GGTGCGCCATTAGTGTGAAA 59.122 50.000 12.58 0.00 34.09 2.69
9607 11525 1.472480 GGTGCGCCATTAGTGTGAAAT 59.528 47.619 12.58 0.00 34.09 2.17
9608 11526 2.680841 GGTGCGCCATTAGTGTGAAATA 59.319 45.455 12.58 0.00 34.09 1.40
9609 11527 3.315191 GGTGCGCCATTAGTGTGAAATAT 59.685 43.478 12.58 0.00 34.09 1.28
9610 11528 4.513692 GGTGCGCCATTAGTGTGAAATATA 59.486 41.667 12.58 0.00 34.09 0.86
9611 11529 5.440685 GTGCGCCATTAGTGTGAAATATAC 58.559 41.667 4.18 0.00 0.00 1.47
9612 11530 5.007234 GTGCGCCATTAGTGTGAAATATACA 59.993 40.000 4.18 0.00 0.00 2.29
9613 11531 5.007234 TGCGCCATTAGTGTGAAATATACAC 59.993 40.000 4.18 0.00 46.67 2.90
9622 11540 5.440685 GTGTGAAATATACACTAATGGCGC 58.559 41.667 0.00 0.00 43.79 6.53
9623 11541 5.007234 GTGTGAAATATACACTAATGGCGCA 59.993 40.000 10.83 0.00 43.79 6.09
9624 11542 5.007234 TGTGAAATATACACTAATGGCGCAC 59.993 40.000 10.83 0.00 38.81 5.34
9625 11543 4.513692 TGAAATATACACTAATGGCGCACC 59.486 41.667 10.83 0.00 0.00 5.01
9626 11544 7.890503 GTGAAATATACACTAATGGCGCACCA 61.891 42.308 10.83 0.00 41.53 4.17
9627 11545 9.567851 GTGAAATATACACTAATGGCGCACCAG 62.568 44.444 10.83 2.55 41.06 4.00
9634 11552 3.276091 TGGCGCACCAGACAAACG 61.276 61.111 10.83 0.00 42.67 3.60
9635 11553 4.025401 GGCGCACCAGACAAACGG 62.025 66.667 10.83 0.00 35.26 4.44
9636 11554 3.276846 GCGCACCAGACAAACGGT 61.277 61.111 0.30 0.00 35.27 4.83
9639 11557 2.631428 CACCAGACAAACGGTGCG 59.369 61.111 0.00 0.00 45.77 5.34
9640 11558 3.276846 ACCAGACAAACGGTGCGC 61.277 61.111 0.00 0.00 33.05 6.09
9641 11559 4.025401 CCAGACAAACGGTGCGCC 62.025 66.667 6.11 6.11 0.00 6.53
9642 11560 3.276091 CAGACAAACGGTGCGCCA 61.276 61.111 18.18 0.00 34.09 5.69
9643 11561 2.281484 AGACAAACGGTGCGCCAT 60.281 55.556 18.18 0.00 34.09 4.40
9644 11562 1.896660 AGACAAACGGTGCGCCATT 60.897 52.632 18.18 3.84 34.09 3.16
9645 11563 0.604243 AGACAAACGGTGCGCCATTA 60.604 50.000 18.18 0.00 34.09 1.90
9646 11564 0.179200 GACAAACGGTGCGCCATTAG 60.179 55.000 18.18 5.68 34.09 1.73
9647 11565 0.887387 ACAAACGGTGCGCCATTAGT 60.887 50.000 18.18 6.37 34.09 2.24
9648 11566 1.080298 CAAACGGTGCGCCATTAGTA 58.920 50.000 18.18 0.00 34.09 1.82
9649 11567 1.465387 CAAACGGTGCGCCATTAGTAA 59.535 47.619 18.18 0.00 34.09 2.24
9650 11568 1.081094 AACGGTGCGCCATTAGTAAC 58.919 50.000 18.18 0.00 34.09 2.50
9651 11569 0.037139 ACGGTGCGCCATTAGTAACA 60.037 50.000 18.18 0.00 34.09 2.41
9652 11570 1.080298 CGGTGCGCCATTAGTAACAA 58.920 50.000 18.18 0.00 34.09 2.83
9653 11571 1.465387 CGGTGCGCCATTAGTAACAAA 59.535 47.619 18.18 0.00 34.09 2.83
9654 11572 2.095668 CGGTGCGCCATTAGTAACAAAA 60.096 45.455 18.18 0.00 34.09 2.44
9655 11573 3.426963 CGGTGCGCCATTAGTAACAAAAT 60.427 43.478 18.18 0.00 34.09 1.82
9656 11574 4.490743 GGTGCGCCATTAGTAACAAAATT 58.509 39.130 12.58 0.00 34.09 1.82
9657 11575 4.926832 GGTGCGCCATTAGTAACAAAATTT 59.073 37.500 12.58 0.00 34.09 1.82
9658 11576 5.407084 GGTGCGCCATTAGTAACAAAATTTT 59.593 36.000 12.58 0.00 34.09 1.82
9659 11577 6.073494 GGTGCGCCATTAGTAACAAAATTTTT 60.073 34.615 12.58 0.00 34.09 1.94
9660 11578 7.116519 GGTGCGCCATTAGTAACAAAATTTTTA 59.883 33.333 12.58 0.00 34.09 1.52
9661 11579 8.652463 GTGCGCCATTAGTAACAAAATTTTTAT 58.348 29.630 4.18 0.00 0.00 1.40
9662 11580 9.209175 TGCGCCATTAGTAACAAAATTTTTATT 57.791 25.926 4.18 1.79 0.00 1.40
9690 11608 5.811399 TTTTTCCAGACATACTAATGGCG 57.189 39.130 0.00 0.00 46.68 5.69
9691 11609 2.526304 TCCAGACATACTAATGGCGC 57.474 50.000 0.00 0.00 46.68 6.53
9692 11610 1.760029 TCCAGACATACTAATGGCGCA 59.240 47.619 10.83 0.00 46.68 6.09
9693 11611 1.867233 CCAGACATACTAATGGCGCAC 59.133 52.381 10.83 0.00 46.68 5.34
9694 11612 1.867233 CAGACATACTAATGGCGCACC 59.133 52.381 10.83 0.00 46.68 5.01
9715 11633 4.047059 GCACAGTGCGCCATTGCT 62.047 61.111 10.47 0.00 31.71 3.91
9716 11634 2.689785 GCACAGTGCGCCATTGCTA 61.690 57.895 10.47 0.00 31.71 3.49
9717 11635 1.426621 CACAGTGCGCCATTGCTAG 59.573 57.895 4.18 0.00 35.36 3.42
9718 11636 1.003355 ACAGTGCGCCATTGCTAGT 60.003 52.632 4.18 0.00 35.36 2.57
9719 11637 0.606401 ACAGTGCGCCATTGCTAGTT 60.606 50.000 4.18 0.00 35.36 2.24
9720 11638 0.097674 CAGTGCGCCATTGCTAGTTC 59.902 55.000 4.18 0.00 35.36 3.01
9721 11639 0.036010 AGTGCGCCATTGCTAGTTCT 60.036 50.000 4.18 0.00 35.36 3.01
9722 11640 1.207089 AGTGCGCCATTGCTAGTTCTA 59.793 47.619 4.18 0.00 35.36 2.10
9723 11641 2.006888 GTGCGCCATTGCTAGTTCTAA 58.993 47.619 4.18 0.00 35.36 2.10
9724 11642 2.006888 TGCGCCATTGCTAGTTCTAAC 58.993 47.619 4.18 0.00 35.36 2.34
9725 11643 2.280628 GCGCCATTGCTAGTTCTAACT 58.719 47.619 0.00 0.39 42.91 2.24
9726 11644 3.118920 TGCGCCATTGCTAGTTCTAACTA 60.119 43.478 4.18 2.76 40.37 2.24
9737 11655 4.730949 AGTTCTAACTAGTAATGGCGCA 57.269 40.909 10.83 0.00 37.52 6.09
9738 11656 4.430908 AGTTCTAACTAGTAATGGCGCAC 58.569 43.478 10.83 0.00 37.52 5.34
9739 11657 3.447918 TCTAACTAGTAATGGCGCACC 57.552 47.619 10.83 0.00 0.00 5.01
9740 11658 7.078031 AGTTCTAACTAGTAATGGCGCACCA 62.078 44.000 10.83 0.00 44.04 4.17
9741 11659 8.781050 AGTTCTAACTAGTAATGGCGCACCAG 62.781 46.154 10.83 0.00 43.47 4.00
9750 11668 2.436646 GCGCACCAGCCACATAGT 60.437 61.111 0.30 0.00 37.52 2.12
9751 11669 2.753966 GCGCACCAGCCACATAGTG 61.754 63.158 0.30 0.00 37.52 2.74
9753 11671 2.753966 GCACCAGCCACATAGTGCG 61.754 63.158 0.00 0.00 45.28 5.34
9754 11672 2.436646 ACCAGCCACATAGTGCGC 60.437 61.111 0.00 0.00 32.66 6.09
9755 11673 3.204827 CCAGCCACATAGTGCGCC 61.205 66.667 4.18 0.00 32.82 6.53
9756 11674 2.436469 CAGCCACATAGTGCGCCA 60.436 61.111 4.18 0.00 32.82 5.69
9757 11675 2.436646 AGCCACATAGTGCGCCAC 60.437 61.111 4.18 3.02 32.82 5.01
9806 11724 2.911819 TGCAAAACTACTAATGGCGC 57.088 45.000 0.00 0.00 0.00 6.53
9807 11725 2.155279 TGCAAAACTACTAATGGCGCA 58.845 42.857 10.83 0.00 0.00 6.09
9808 11726 2.095466 TGCAAAACTACTAATGGCGCAC 60.095 45.455 10.83 0.00 0.00 5.34
9809 11727 2.731027 GCAAAACTACTAATGGCGCACC 60.731 50.000 10.83 0.00 0.00 5.01
9810 11728 2.747446 CAAAACTACTAATGGCGCACCT 59.253 45.455 10.83 0.00 36.63 4.00
9811 11729 2.024176 AACTACTAATGGCGCACCTG 57.976 50.000 10.83 0.00 36.63 4.00
9812 11730 0.178068 ACTACTAATGGCGCACCTGG 59.822 55.000 10.83 0.00 36.63 4.45
9813 11731 0.532862 CTACTAATGGCGCACCTGGG 60.533 60.000 10.83 0.00 36.63 4.45
9814 11732 1.978455 TACTAATGGCGCACCTGGGG 61.978 60.000 10.83 0.00 36.63 4.96
9815 11733 3.012119 TAATGGCGCACCTGGGGA 61.012 61.111 10.83 0.00 36.63 4.81
9816 11734 3.338275 TAATGGCGCACCTGGGGAC 62.338 63.158 10.83 0.00 38.14 4.46
9827 11745 3.965258 TGGGGACAGTGCGCCATT 61.965 61.111 15.88 0.00 44.78 3.16
9828 11746 2.270850 GGGGACAGTGCGCCATTA 59.729 61.111 4.18 0.00 40.36 1.90
9829 11747 2.112815 GGGGACAGTGCGCCATTAC 61.113 63.158 4.18 0.00 40.36 1.89
9830 11748 1.078426 GGGACAGTGCGCCATTACT 60.078 57.895 4.18 0.00 0.00 2.24
9831 11749 0.177141 GGGACAGTGCGCCATTACTA 59.823 55.000 4.18 0.00 0.00 1.82
9832 11750 1.571919 GGACAGTGCGCCATTACTAG 58.428 55.000 4.18 0.00 0.00 2.57
9833 11751 1.134788 GGACAGTGCGCCATTACTAGT 60.135 52.381 4.18 0.00 0.00 2.57
9834 11752 2.618053 GACAGTGCGCCATTACTAGTT 58.382 47.619 4.18 0.00 0.00 2.24
9835 11753 3.000727 GACAGTGCGCCATTACTAGTTT 58.999 45.455 4.18 0.00 0.00 2.66
9836 11754 4.178540 GACAGTGCGCCATTACTAGTTTA 58.821 43.478 4.18 0.00 0.00 2.01
9837 11755 4.571919 ACAGTGCGCCATTACTAGTTTAA 58.428 39.130 4.18 0.00 0.00 1.52
9838 11756 4.630069 ACAGTGCGCCATTACTAGTTTAAG 59.370 41.667 4.18 0.00 0.00 1.85
9839 11757 3.621715 AGTGCGCCATTACTAGTTTAAGC 59.378 43.478 4.18 0.00 0.00 3.09
9840 11758 3.621715 GTGCGCCATTACTAGTTTAAGCT 59.378 43.478 4.18 0.00 0.00 3.74
9841 11759 4.807304 GTGCGCCATTACTAGTTTAAGCTA 59.193 41.667 4.18 0.00 0.00 3.32
9842 11760 5.047847 TGCGCCATTACTAGTTTAAGCTAG 58.952 41.667 21.00 21.00 42.96 3.42
9844 11762 6.183360 TGCGCCATTACTAGTTTAAGCTAGTA 60.183 38.462 26.37 26.37 46.84 1.82
9851 11769 5.048507 ACTAGTTTAAGCTAGTAATGGCGC 58.951 41.667 25.29 0.00 46.84 6.53
9852 11770 3.869065 AGTTTAAGCTAGTAATGGCGCA 58.131 40.909 10.83 0.00 0.00 6.09
9853 11771 3.621715 AGTTTAAGCTAGTAATGGCGCAC 59.378 43.478 10.83 0.00 0.00 5.34
9854 11772 3.536956 TTAAGCTAGTAATGGCGCACT 57.463 42.857 10.83 6.53 0.00 4.40
9855 11773 1.656652 AAGCTAGTAATGGCGCACTG 58.343 50.000 10.83 0.48 0.00 3.66
9856 11774 0.811616 AGCTAGTAATGGCGCACTGC 60.812 55.000 10.83 10.33 45.38 4.40
9857 11775 0.811616 GCTAGTAATGGCGCACTGCT 60.812 55.000 10.83 3.97 45.43 4.24
9858 11776 1.212616 CTAGTAATGGCGCACTGCTC 58.787 55.000 10.83 0.00 45.43 4.26
9859 11777 0.179084 TAGTAATGGCGCACTGCTCC 60.179 55.000 10.83 2.83 45.43 4.70
9860 11778 2.124736 TAATGGCGCACTGCTCCC 60.125 61.111 10.83 4.33 45.43 4.30
9861 11779 2.669133 TAATGGCGCACTGCTCCCT 61.669 57.895 10.83 0.00 45.43 4.20
9862 11780 2.874648 TAATGGCGCACTGCTCCCTG 62.875 60.000 10.83 0.00 45.43 4.45
9866 11784 4.767255 CGCACTGCTCCCTGGTCC 62.767 72.222 0.00 0.00 0.00 4.46
9867 11785 4.767255 GCACTGCTCCCTGGTCCG 62.767 72.222 0.00 0.00 0.00 4.79
9868 11786 4.767255 CACTGCTCCCTGGTCCGC 62.767 72.222 0.00 0.00 0.00 5.54
9872 11790 4.115199 GCTCCCTGGTCCGCCATT 62.115 66.667 0.00 0.00 45.05 3.16
9873 11791 2.742116 GCTCCCTGGTCCGCCATTA 61.742 63.158 0.00 0.00 45.05 1.90
9874 11792 1.447643 CTCCCTGGTCCGCCATTAG 59.552 63.158 0.00 0.00 45.05 1.73
9875 11793 1.306654 TCCCTGGTCCGCCATTAGT 60.307 57.895 0.00 0.00 45.05 2.24
9876 11794 1.153168 CCCTGGTCCGCCATTAGTG 60.153 63.158 0.00 0.00 45.05 2.74
9877 11795 1.602237 CCTGGTCCGCCATTAGTGT 59.398 57.895 0.00 0.00 45.05 3.55
9878 11796 0.462047 CCTGGTCCGCCATTAGTGTC 60.462 60.000 0.00 0.00 45.05 3.67
9879 11797 0.537188 CTGGTCCGCCATTAGTGTCT 59.463 55.000 0.00 0.00 45.05 3.41
9880 11798 0.249120 TGGTCCGCCATTAGTGTCTG 59.751 55.000 0.00 0.00 40.46 3.51
9881 11799 0.249398 GGTCCGCCATTAGTGTCTGT 59.751 55.000 0.00 0.00 34.09 3.41
9882 11800 1.338769 GGTCCGCCATTAGTGTCTGTT 60.339 52.381 0.00 0.00 34.09 3.16
9883 11801 2.423577 GTCCGCCATTAGTGTCTGTTT 58.576 47.619 0.00 0.00 0.00 2.83
9884 11802 2.812011 GTCCGCCATTAGTGTCTGTTTT 59.188 45.455 0.00 0.00 0.00 2.43
9885 11803 3.252458 GTCCGCCATTAGTGTCTGTTTTT 59.748 43.478 0.00 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 5.701290 GGCACTATCATTTTATCCTTAGCGT 59.299 40.000 0.00 0.00 0.00 5.07
8 9 6.091441 CGAGGCACTATCATTTTATCCTTAGC 59.909 42.308 0.00 0.00 41.55 3.09
29 30 5.818136 AAACATCAACCAATATGACGAGG 57.182 39.130 0.00 0.00 0.00 4.63
248 261 8.691797 ACAAATTATAGTTGGGCAACGATTAAT 58.308 29.630 0.00 0.00 45.50 1.40
369 388 1.632018 TAGTAAAGGCGGCAGGGCAT 61.632 55.000 13.08 0.00 45.36 4.40
378 397 7.254227 TGGTAGCAAAATAATAGTAAAGGCG 57.746 36.000 0.00 0.00 0.00 5.52
515 556 1.269723 GAGTACCCCAGCAAACAAAGC 59.730 52.381 0.00 0.00 0.00 3.51
531 574 9.720769 CAAAGGTTTATTGAACTAGAAGGAGTA 57.279 33.333 0.00 0.00 38.35 2.59
562 607 7.253905 AGCAGTAAGTATTTCCCTCAGTTAA 57.746 36.000 0.00 0.00 0.00 2.01
606 651 2.311542 AGAGTTGTTTGGATGCCCCATA 59.688 45.455 0.00 0.00 46.10 2.74
4408 4527 8.556213 TGTAGTGTCGCCTTAGATTTATTTTT 57.444 30.769 0.00 0.00 0.00 1.94
6519 7945 3.401033 TGTCATCCTCGATTGTGTTGT 57.599 42.857 0.00 0.00 0.00 3.32
6520 7946 4.747540 TTTGTCATCCTCGATTGTGTTG 57.252 40.909 0.00 0.00 0.00 3.33
6521 7947 5.964958 AATTTGTCATCCTCGATTGTGTT 57.035 34.783 0.00 0.00 0.00 3.32
6523 7949 5.702865 ACAAATTTGTCATCCTCGATTGTG 58.297 37.500 18.13 0.00 36.50 3.33
6524 7950 5.964958 ACAAATTTGTCATCCTCGATTGT 57.035 34.783 18.13 0.00 36.50 2.71
6525 7951 6.380995 TGAACAAATTTGTCATCCTCGATTG 58.619 36.000 23.47 0.00 41.31 2.67
6526 7952 6.430925 TCTGAACAAATTTGTCATCCTCGATT 59.569 34.615 23.47 4.47 41.31 3.34
6527 7953 5.939883 TCTGAACAAATTTGTCATCCTCGAT 59.060 36.000 23.47 5.21 41.31 3.59
6528 7954 5.304778 TCTGAACAAATTTGTCATCCTCGA 58.695 37.500 23.47 14.42 41.31 4.04
6529 7955 5.391310 CCTCTGAACAAATTTGTCATCCTCG 60.391 44.000 23.47 12.72 41.31 4.63
6559 7986 1.202615 CCATCTCGACATGCCACTCAT 60.203 52.381 0.00 0.00 35.31 2.90
6560 7987 0.176449 CCATCTCGACATGCCACTCA 59.824 55.000 0.00 0.00 0.00 3.41
6592 8019 2.834549 CTGAGCCTGGGAAAACTCTCTA 59.165 50.000 0.00 0.00 0.00 2.43
6650 8077 3.120060 GGCACTCAAGCAATACAGAACTG 60.120 47.826 0.00 0.00 35.83 3.16
6656 8083 1.305219 GCGGGCACTCAAGCAATACA 61.305 55.000 0.00 0.00 35.83 2.29
6705 8132 4.503991 GGCCATGGGATTGTTACACAAAAA 60.504 41.667 15.13 0.00 41.96 1.94
6710 8137 2.143876 AGGCCATGGGATTGTTACAC 57.856 50.000 15.13 0.00 0.00 2.90
6719 8146 2.377810 CCACTGCTAGGCCATGGGA 61.378 63.158 15.13 0.00 31.50 4.37
6721 8148 1.147824 CTCCACTGCTAGGCCATGG 59.852 63.158 7.63 7.63 34.94 3.66
6827 8254 5.585445 CCCTAGCTCGATTGAGTATATACGT 59.415 44.000 11.71 0.00 44.48 3.57
6863 8290 2.671070 CGGCCTGATCACCAACCT 59.329 61.111 0.00 0.00 0.00 3.50
6905 8332 4.611564 AGAGTACCTCCTAAGACATGGT 57.388 45.455 0.00 0.00 35.05 3.55
6922 8349 3.356290 ACTTTCCACACAAGCAAAGAGT 58.644 40.909 0.00 0.00 31.49 3.24
6937 8364 0.673956 GAAGGCGTCCCTGACTTTCC 60.674 60.000 0.00 0.00 41.90 3.13
7016 8443 1.381327 CGGACCTAAGGGCTCTGGA 60.381 63.158 0.00 0.00 35.63 3.86
7056 8483 9.524106 CATCGTATTATGTTGACAAAGGTACTA 57.476 33.333 0.00 0.00 38.49 1.82
7216 8648 9.639601 CTTGTCAGACTTATGTACTTGATGTAA 57.360 33.333 1.31 0.00 32.25 2.41
7259 8691 5.611796 TTCTGTGATAATGCTTGTGTCAC 57.388 39.130 0.00 0.00 39.58 3.67
7308 8740 9.450807 GTTGTTTCATACTTATCACCAATATGC 57.549 33.333 0.00 0.00 0.00 3.14
7326 8758 8.600449 AACAATTTCTTCTTGTTGTTGTTTCA 57.400 26.923 0.96 0.00 43.31 2.69
7343 8775 8.334632 CCCAACAACAATAAAGTGAACAATTTC 58.665 33.333 3.61 0.00 30.75 2.17
7457 9318 2.000447 GTGGAATCCAACTGTCGCTAC 59.000 52.381 2.31 0.00 34.18 3.58
7600 9484 1.386533 CCTGTGATGATTGACCCTGC 58.613 55.000 0.00 0.00 0.00 4.85
7617 9501 3.708451 ACTTTCCTTGTTGTTGAACCCT 58.292 40.909 0.00 0.00 0.00 4.34
7715 9599 4.396166 AGAACTACATTACCTGTTGCATGC 59.604 41.667 11.82 11.82 39.39 4.06
7734 9618 5.297547 TCCACTACAAGATCAACACAGAAC 58.702 41.667 0.00 0.00 0.00 3.01
7873 9757 4.400529 AAAAATTGTGAGTTGGTGACCC 57.599 40.909 0.00 0.00 0.00 4.46
7891 9775 7.769507 GGAAAACCCAGTAAAATTGGTGTAAAA 59.230 33.333 0.00 0.00 33.73 1.52
7893 9777 6.612049 AGGAAAACCCAGTAAAATTGGTGTAA 59.388 34.615 0.00 0.00 37.41 2.41
7906 9791 4.641868 TCCTATATGGAGGAAAACCCAGT 58.358 43.478 0.00 0.00 42.90 4.00
7980 9865 5.738619 TCTCTAGCACCTCAACATTGTTA 57.261 39.130 0.86 0.00 0.00 2.41
8018 9903 3.857010 GCTTGGTGCAATTACTGGTTGAC 60.857 47.826 0.00 0.00 42.31 3.18
8144 10029 9.748708 ATGATAATTTTTGTGTGATAATTCCCG 57.251 29.630 0.00 0.00 0.00 5.14
8187 10072 9.904198 CCCCCAAAAATACATTCTTCATAAATT 57.096 29.630 0.00 0.00 0.00 1.82
8195 10080 6.319715 AGTACACCCCCAAAAATACATTCTT 58.680 36.000 0.00 0.00 0.00 2.52
8197 10082 6.599356 AAGTACACCCCCAAAAATACATTC 57.401 37.500 0.00 0.00 0.00 2.67
8305 10192 7.164803 CCAATGCCACTAAATTTAAAGGGAAA 58.835 34.615 11.93 2.57 0.00 3.13
8684 10590 3.499918 CGGCCATAGAAACTCAATCCATC 59.500 47.826 2.24 0.00 0.00 3.51
8696 10602 1.409521 CCATTTCCCACGGCCATAGAA 60.410 52.381 2.24 0.00 0.00 2.10
8776 10682 6.039941 TCTCTAGCCTCTTGAAGTACTTATGC 59.960 42.308 8.42 1.78 0.00 3.14
8911 10820 2.667199 GGGTTCGGGTGGTCAACG 60.667 66.667 0.00 0.00 0.00 4.10
8922 10831 5.682943 TCACAATCTAAAACTTGGGTTCG 57.317 39.130 0.00 0.00 34.14 3.95
8936 10845 3.062763 CTCGCAACAGAGTTCACAATCT 58.937 45.455 0.00 0.00 33.75 2.40
9030 10942 8.773033 AGCTGGGAGATAATTTATTCAACAAT 57.227 30.769 0.00 0.00 0.00 2.71
9191 11103 6.037610 GCATGTAGTAAGTGGAAGAAATCAGG 59.962 42.308 0.00 0.00 0.00 3.86
9240 11152 8.015658 GGTGTCATCTAAATACAACTTTGTGAC 58.984 37.037 4.82 2.29 42.31 3.67
9338 11252 8.239314 TGTCTCAGAGAATGCAAAATGAATTAC 58.761 33.333 0.20 0.00 0.00 1.89
9339 11253 8.239314 GTGTCTCAGAGAATGCAAAATGAATTA 58.761 33.333 0.20 0.00 0.00 1.40
9365 11281 4.466015 AGCCCAACAAAAATGTATACTGGG 59.534 41.667 15.08 15.08 44.34 4.45
9367 11283 6.686630 TGAAGCCCAACAAAAATGTATACTG 58.313 36.000 4.17 0.00 0.00 2.74
9415 11333 7.626999 ACATTAGGTATCTTATGCACCCTAA 57.373 36.000 1.88 0.00 38.51 2.69
9485 11403 7.571025 AGTCCTTTTCCTAGTAGTGTGAAAAA 58.429 34.615 11.53 4.20 36.57 1.94
9486 11404 7.133133 AGTCCTTTTCCTAGTAGTGTGAAAA 57.867 36.000 10.51 10.51 35.89 2.29
9487 11405 6.742559 AGTCCTTTTCCTAGTAGTGTGAAA 57.257 37.500 0.00 0.00 0.00 2.69
9488 11406 9.186837 CTATAGTCCTTTTCCTAGTAGTGTGAA 57.813 37.037 0.00 0.00 0.00 3.18
9489 11407 8.554870 TCTATAGTCCTTTTCCTAGTAGTGTGA 58.445 37.037 0.00 0.00 0.00 3.58
9490 11408 8.749026 TCTATAGTCCTTTTCCTAGTAGTGTG 57.251 38.462 0.00 0.00 0.00 3.82
9491 11409 9.357161 CATCTATAGTCCTTTTCCTAGTAGTGT 57.643 37.037 0.00 0.00 0.00 3.55
9492 11410 8.798402 CCATCTATAGTCCTTTTCCTAGTAGTG 58.202 40.741 0.00 0.00 0.00 2.74
9493 11411 8.734763 TCCATCTATAGTCCTTTTCCTAGTAGT 58.265 37.037 0.00 0.00 0.00 2.73
9494 11412 9.589461 TTCCATCTATAGTCCTTTTCCTAGTAG 57.411 37.037 0.00 0.00 0.00 2.57
9496 11414 8.875168 CATTCCATCTATAGTCCTTTTCCTAGT 58.125 37.037 0.00 0.00 0.00 2.57
9497 11415 8.317679 CCATTCCATCTATAGTCCTTTTCCTAG 58.682 40.741 0.00 0.00 0.00 3.02
9498 11416 7.256691 GCCATTCCATCTATAGTCCTTTTCCTA 60.257 40.741 0.00 0.00 0.00 2.94
9499 11417 6.466470 GCCATTCCATCTATAGTCCTTTTCCT 60.466 42.308 0.00 0.00 0.00 3.36
9500 11418 5.707764 GCCATTCCATCTATAGTCCTTTTCC 59.292 44.000 0.00 0.00 0.00 3.13
9501 11419 5.707764 GGCCATTCCATCTATAGTCCTTTTC 59.292 44.000 0.00 0.00 34.01 2.29
9502 11420 5.134339 TGGCCATTCCATCTATAGTCCTTTT 59.866 40.000 0.00 0.00 40.72 2.27
9503 11421 4.665009 TGGCCATTCCATCTATAGTCCTTT 59.335 41.667 0.00 0.00 40.72 3.11
9504 11422 4.242811 TGGCCATTCCATCTATAGTCCTT 58.757 43.478 0.00 0.00 40.72 3.36
9505 11423 3.874316 TGGCCATTCCATCTATAGTCCT 58.126 45.455 0.00 0.00 40.72 3.85
9525 11443 1.655484 TGTCTGATGCGCCATTAGTG 58.345 50.000 4.18 0.00 30.87 2.74
9526 11444 2.627515 ATGTCTGATGCGCCATTAGT 57.372 45.000 4.18 0.00 30.87 2.24
9527 11445 3.549423 CCAAATGTCTGATGCGCCATTAG 60.549 47.826 4.18 5.13 0.00 1.73
9528 11446 2.358582 CCAAATGTCTGATGCGCCATTA 59.641 45.455 4.18 0.00 0.00 1.90
9529 11447 1.135527 CCAAATGTCTGATGCGCCATT 59.864 47.619 4.18 2.86 0.00 3.16
9530 11448 0.742505 CCAAATGTCTGATGCGCCAT 59.257 50.000 4.18 0.00 0.00 4.40
9531 11449 0.608856 ACCAAATGTCTGATGCGCCA 60.609 50.000 4.18 0.00 0.00 5.69
9532 11450 0.179156 CACCAAATGTCTGATGCGCC 60.179 55.000 4.18 0.00 0.00 6.53
9533 11451 0.799534 GCACCAAATGTCTGATGCGC 60.800 55.000 0.00 0.00 0.00 6.09
9534 11452 3.317608 GCACCAAATGTCTGATGCG 57.682 52.632 0.00 0.00 0.00 4.73
9535 11453 0.799534 GCGCACCAAATGTCTGATGC 60.800 55.000 0.30 0.00 0.00 3.91
9536 11454 0.179156 GGCGCACCAAATGTCTGATG 60.179 55.000 10.83 0.00 35.26 3.07
9537 11455 0.608856 TGGCGCACCAAATGTCTGAT 60.609 50.000 10.83 0.00 45.37 2.90
9538 11456 1.228094 TGGCGCACCAAATGTCTGA 60.228 52.632 10.83 0.00 45.37 3.27
9539 11457 3.353600 TGGCGCACCAAATGTCTG 58.646 55.556 10.83 0.00 45.37 3.51
9560 11478 1.154205 GGTGCGCCACTGCTACATAG 61.154 60.000 12.58 0.00 34.40 2.23
9561 11479 1.153449 GGTGCGCCACTGCTACATA 60.153 57.895 12.58 0.00 34.40 2.29
9562 11480 2.436646 GGTGCGCCACTGCTACAT 60.437 61.111 12.58 0.00 34.40 2.29
9563 11481 3.934962 TGGTGCGCCACTGCTACA 61.935 61.111 16.89 0.00 40.46 2.74
9587 11505 0.878416 TTTCACACTAATGGCGCACC 59.122 50.000 10.83 0.00 0.00 5.01
9588 11506 2.919666 ATTTCACACTAATGGCGCAC 57.080 45.000 10.83 0.00 0.00 5.34
9589 11507 5.007234 GTGTATATTTCACACTAATGGCGCA 59.993 40.000 10.83 0.00 42.43 6.09
9590 11508 5.440685 GTGTATATTTCACACTAATGGCGC 58.559 41.667 0.00 0.00 42.43 6.53
9599 11517 5.007234 TGCGCCATTAGTGTATATTTCACAC 59.993 40.000 4.18 6.38 45.36 3.82
9600 11518 5.007234 GTGCGCCATTAGTGTATATTTCACA 59.993 40.000 4.18 0.00 38.16 3.58
9601 11519 5.440685 GTGCGCCATTAGTGTATATTTCAC 58.559 41.667 4.18 3.50 36.22 3.18
9602 11520 4.513692 GGTGCGCCATTAGTGTATATTTCA 59.486 41.667 12.58 0.00 34.09 2.69
9603 11521 4.513692 TGGTGCGCCATTAGTGTATATTTC 59.486 41.667 16.89 0.00 40.46 2.17
9604 11522 4.456535 TGGTGCGCCATTAGTGTATATTT 58.543 39.130 16.89 0.00 40.46 1.40
9605 11523 4.065088 CTGGTGCGCCATTAGTGTATATT 58.935 43.478 21.54 0.00 45.05 1.28
9606 11524 3.323691 TCTGGTGCGCCATTAGTGTATAT 59.676 43.478 21.54 0.00 45.05 0.86
9607 11525 2.696187 TCTGGTGCGCCATTAGTGTATA 59.304 45.455 21.54 0.00 45.05 1.47
9608 11526 1.484653 TCTGGTGCGCCATTAGTGTAT 59.515 47.619 21.54 0.00 45.05 2.29
9609 11527 0.899019 TCTGGTGCGCCATTAGTGTA 59.101 50.000 21.54 0.00 45.05 2.90
9610 11528 0.673644 GTCTGGTGCGCCATTAGTGT 60.674 55.000 21.54 0.00 45.05 3.55
9611 11529 0.673333 TGTCTGGTGCGCCATTAGTG 60.673 55.000 21.54 7.89 45.05 2.74
9612 11530 0.036164 TTGTCTGGTGCGCCATTAGT 59.964 50.000 21.54 0.00 45.05 2.24
9613 11531 1.135689 GTTTGTCTGGTGCGCCATTAG 60.136 52.381 21.54 8.73 45.05 1.73
9614 11532 0.878416 GTTTGTCTGGTGCGCCATTA 59.122 50.000 21.54 8.54 45.05 1.90
9615 11533 1.659794 GTTTGTCTGGTGCGCCATT 59.340 52.632 21.54 0.00 45.05 3.16
9616 11534 2.616330 CGTTTGTCTGGTGCGCCAT 61.616 57.895 21.54 0.00 45.05 4.40
9617 11535 3.276091 CGTTTGTCTGGTGCGCCA 61.276 61.111 19.93 19.93 43.73 5.69
9618 11536 4.025401 CCGTTTGTCTGGTGCGCC 62.025 66.667 10.11 10.11 0.00 6.53
9619 11537 3.276846 ACCGTTTGTCTGGTGCGC 61.277 61.111 0.00 0.00 37.02 6.09
9623 11541 3.276846 GCGCACCGTTTGTCTGGT 61.277 61.111 0.30 0.00 39.66 4.00
9624 11542 4.025401 GGCGCACCGTTTGTCTGG 62.025 66.667 10.83 0.00 0.00 3.86
9625 11543 2.128853 AATGGCGCACCGTTTGTCTG 62.129 55.000 10.83 0.00 42.91 3.51
9626 11544 0.604243 TAATGGCGCACCGTTTGTCT 60.604 50.000 10.83 0.00 42.91 3.41
9627 11545 0.179200 CTAATGGCGCACCGTTTGTC 60.179 55.000 10.83 0.00 42.91 3.18
9628 11546 0.887387 ACTAATGGCGCACCGTTTGT 60.887 50.000 10.83 5.24 42.91 2.83
9629 11547 1.080298 TACTAATGGCGCACCGTTTG 58.920 50.000 10.83 4.56 42.91 2.93
9630 11548 1.465777 GTTACTAATGGCGCACCGTTT 59.534 47.619 10.83 0.00 42.91 3.60
9632 11550 0.037139 TGTTACTAATGGCGCACCGT 60.037 50.000 10.83 0.65 39.70 4.83
9633 11551 1.080298 TTGTTACTAATGGCGCACCG 58.920 50.000 10.83 0.00 39.70 4.94
9634 11552 3.562567 TTTTGTTACTAATGGCGCACC 57.437 42.857 10.83 0.00 0.00 5.01
9635 11553 6.460664 AAAATTTTGTTACTAATGGCGCAC 57.539 33.333 10.83 0.00 0.00 5.34
9636 11554 8.764524 ATAAAAATTTTGTTACTAATGGCGCA 57.235 26.923 10.83 0.00 0.00 6.09
9664 11582 8.402472 CGCCATTAGTATGTCTGGAAAAATAAA 58.598 33.333 0.00 0.00 0.00 1.40
9665 11583 7.468084 GCGCCATTAGTATGTCTGGAAAAATAA 60.468 37.037 0.00 0.00 0.00 1.40
9666 11584 6.017440 GCGCCATTAGTATGTCTGGAAAAATA 60.017 38.462 0.00 0.00 0.00 1.40
9667 11585 5.221048 GCGCCATTAGTATGTCTGGAAAAAT 60.221 40.000 0.00 0.00 0.00 1.82
9668 11586 4.095782 GCGCCATTAGTATGTCTGGAAAAA 59.904 41.667 0.00 0.00 0.00 1.94
9669 11587 3.625764 GCGCCATTAGTATGTCTGGAAAA 59.374 43.478 0.00 0.00 0.00 2.29
9670 11588 3.202906 GCGCCATTAGTATGTCTGGAAA 58.797 45.455 0.00 0.00 0.00 3.13
9671 11589 2.169561 TGCGCCATTAGTATGTCTGGAA 59.830 45.455 4.18 0.00 0.00 3.53
9672 11590 1.760029 TGCGCCATTAGTATGTCTGGA 59.240 47.619 4.18 0.00 0.00 3.86
9673 11591 1.867233 GTGCGCCATTAGTATGTCTGG 59.133 52.381 4.18 0.00 0.00 3.86
9674 11592 1.867233 GGTGCGCCATTAGTATGTCTG 59.133 52.381 12.58 0.00 34.09 3.51
9675 11593 1.484653 TGGTGCGCCATTAGTATGTCT 59.515 47.619 16.89 0.00 40.46 3.41
9676 11594 1.948104 TGGTGCGCCATTAGTATGTC 58.052 50.000 16.89 0.00 40.46 3.06
9688 11606 4.409218 CACTGTGCCATGGTGCGC 62.409 66.667 14.67 0.00 42.05 6.09
9689 11607 4.409218 GCACTGTGCCATGGTGCG 62.409 66.667 21.78 2.30 44.91 5.34
9691 11609 4.409218 GCGCACTGTGCCATGGTG 62.409 66.667 25.61 12.33 41.12 4.17
9702 11620 7.356396 TAGTTAGAACTAGCAATGGCGCACT 62.356 44.000 10.83 0.00 41.94 4.40
9703 11621 5.208655 TAGTTAGAACTAGCAATGGCGCAC 61.209 45.833 10.83 0.00 41.94 5.34
9704 11622 3.118920 TAGTTAGAACTAGCAATGGCGCA 60.119 43.478 10.83 0.00 41.94 6.09
9705 11623 3.454375 TAGTTAGAACTAGCAATGGCGC 58.546 45.455 0.00 0.00 41.94 6.53
9714 11632 7.224000 GGTGCGCCATTACTAGTTAGAACTAG 61.224 46.154 22.30 22.30 46.85 2.57
9715 11633 5.450965 GGTGCGCCATTACTAGTTAGAACTA 60.451 44.000 12.58 2.30 36.21 2.24
9716 11634 4.430908 GTGCGCCATTACTAGTTAGAACT 58.569 43.478 4.18 0.00 42.91 3.01
9717 11635 3.554731 GGTGCGCCATTACTAGTTAGAAC 59.445 47.826 12.58 0.00 34.09 3.01
9718 11636 3.196039 TGGTGCGCCATTACTAGTTAGAA 59.804 43.478 16.89 0.00 40.46 2.10
9719 11637 2.761767 TGGTGCGCCATTACTAGTTAGA 59.238 45.455 16.89 0.00 40.46 2.10
9720 11638 3.123804 CTGGTGCGCCATTACTAGTTAG 58.876 50.000 21.54 0.00 45.05 2.34
9721 11639 2.740580 GCTGGTGCGCCATTACTAGTTA 60.741 50.000 21.54 0.00 45.05 2.24
9722 11640 2.012051 GCTGGTGCGCCATTACTAGTT 61.012 52.381 21.54 0.00 45.05 2.24
9723 11641 0.462047 GCTGGTGCGCCATTACTAGT 60.462 55.000 21.54 0.00 45.05 2.57
9724 11642 2.311294 GCTGGTGCGCCATTACTAG 58.689 57.895 21.54 8.11 45.05 2.57
9725 11643 4.532490 GCTGGTGCGCCATTACTA 57.468 55.556 21.54 0.00 45.05 1.82
9733 11651 2.436646 ACTATGTGGCTGGTGCGC 60.437 61.111 0.00 0.00 40.82 6.09
9734 11652 2.753966 GCACTATGTGGCTGGTGCG 61.754 63.158 0.00 0.00 43.91 5.34
9735 11653 3.190878 GCACTATGTGGCTGGTGC 58.809 61.111 0.00 0.00 45.93 5.01
9736 11654 2.753966 GCGCACTATGTGGCTGGTG 61.754 63.158 0.30 0.00 33.64 4.17
9737 11655 2.436646 GCGCACTATGTGGCTGGT 60.437 61.111 0.30 0.00 33.64 4.00
9783 11701 4.446051 GCGCCATTAGTAGTTTTGCAAAAA 59.554 37.500 25.40 9.18 0.00 1.94
9784 11702 3.984633 GCGCCATTAGTAGTTTTGCAAAA 59.015 39.130 20.46 20.46 0.00 2.44
9785 11703 3.004839 TGCGCCATTAGTAGTTTTGCAAA 59.995 39.130 8.05 8.05 0.00 3.68
9786 11704 2.554462 TGCGCCATTAGTAGTTTTGCAA 59.446 40.909 4.18 0.00 0.00 4.08
9787 11705 2.095466 GTGCGCCATTAGTAGTTTTGCA 60.095 45.455 4.18 0.00 0.00 4.08
9788 11706 2.515912 GTGCGCCATTAGTAGTTTTGC 58.484 47.619 4.18 0.00 0.00 3.68
9789 11707 2.747446 AGGTGCGCCATTAGTAGTTTTG 59.253 45.455 20.59 0.00 37.19 2.44
9790 11708 2.747446 CAGGTGCGCCATTAGTAGTTTT 59.253 45.455 20.59 0.00 37.19 2.43
9791 11709 2.356135 CAGGTGCGCCATTAGTAGTTT 58.644 47.619 20.59 0.00 37.19 2.66
9792 11710 1.406887 CCAGGTGCGCCATTAGTAGTT 60.407 52.381 20.59 0.00 37.19 2.24
9793 11711 0.178068 CCAGGTGCGCCATTAGTAGT 59.822 55.000 20.59 0.00 37.19 2.73
9794 11712 0.532862 CCCAGGTGCGCCATTAGTAG 60.533 60.000 20.59 0.00 37.19 2.57
9795 11713 1.524961 CCCAGGTGCGCCATTAGTA 59.475 57.895 20.59 0.00 37.19 1.82
9796 11714 2.272146 CCCAGGTGCGCCATTAGT 59.728 61.111 20.59 0.00 37.19 2.24
9797 11715 2.516930 CCCCAGGTGCGCCATTAG 60.517 66.667 20.59 5.07 37.19 1.73
9798 11716 3.012119 TCCCCAGGTGCGCCATTA 61.012 61.111 20.59 0.00 37.19 1.90
9799 11717 4.740822 GTCCCCAGGTGCGCCATT 62.741 66.667 20.59 0.00 37.19 3.16
9809 11727 2.535485 TAATGGCGCACTGTCCCCAG 62.535 60.000 10.83 0.00 44.68 4.45
9810 11728 2.597818 TAATGGCGCACTGTCCCCA 61.598 57.895 10.83 0.00 0.00 4.96
9811 11729 2.112815 GTAATGGCGCACTGTCCCC 61.113 63.158 10.83 0.00 0.00 4.81
9812 11730 0.177141 TAGTAATGGCGCACTGTCCC 59.823 55.000 10.83 0.00 0.00 4.46
9813 11731 1.134788 ACTAGTAATGGCGCACTGTCC 60.135 52.381 10.83 0.00 0.00 4.02
9814 11732 2.295253 ACTAGTAATGGCGCACTGTC 57.705 50.000 10.83 0.00 0.00 3.51
9815 11733 2.762535 AACTAGTAATGGCGCACTGT 57.237 45.000 10.83 2.52 0.00 3.55
9816 11734 4.494199 GCTTAAACTAGTAATGGCGCACTG 60.494 45.833 10.83 1.89 0.00 3.66
9817 11735 3.621715 GCTTAAACTAGTAATGGCGCACT 59.378 43.478 10.83 6.53 0.00 4.40
9818 11736 3.621715 AGCTTAAACTAGTAATGGCGCAC 59.378 43.478 10.83 0.00 0.00 5.34
9819 11737 3.869065 AGCTTAAACTAGTAATGGCGCA 58.131 40.909 10.83 0.00 0.00 6.09
9820 11738 5.577860 CTAGCTTAAACTAGTAATGGCGC 57.422 43.478 0.00 0.00 35.83 6.53
9829 11747 5.047847 TGCGCCATTACTAGCTTAAACTAG 58.952 41.667 4.18 10.70 44.38 2.57
9830 11748 4.807304 GTGCGCCATTACTAGCTTAAACTA 59.193 41.667 4.18 0.00 0.00 2.24
9831 11749 3.621715 GTGCGCCATTACTAGCTTAAACT 59.378 43.478 4.18 0.00 0.00 2.66
9832 11750 3.621715 AGTGCGCCATTACTAGCTTAAAC 59.378 43.478 4.18 0.00 0.00 2.01
9833 11751 3.621268 CAGTGCGCCATTACTAGCTTAAA 59.379 43.478 4.18 0.00 0.00 1.52
9834 11752 3.194861 CAGTGCGCCATTACTAGCTTAA 58.805 45.455 4.18 0.00 0.00 1.85
9835 11753 2.821546 CAGTGCGCCATTACTAGCTTA 58.178 47.619 4.18 0.00 0.00 3.09
9836 11754 1.656652 CAGTGCGCCATTACTAGCTT 58.343 50.000 4.18 0.00 0.00 3.74
9837 11755 0.811616 GCAGTGCGCCATTACTAGCT 60.812 55.000 4.18 0.00 32.94 3.32
9838 11756 0.811616 AGCAGTGCGCCATTACTAGC 60.812 55.000 10.00 8.26 44.04 3.42
9839 11757 1.212616 GAGCAGTGCGCCATTACTAG 58.787 55.000 10.00 0.00 44.04 2.57
9840 11758 3.362581 GAGCAGTGCGCCATTACTA 57.637 52.632 10.00 0.00 44.04 1.82
9841 11759 4.208632 GAGCAGTGCGCCATTACT 57.791 55.556 10.00 0.00 44.04 2.24
9849 11767 4.767255 GGACCAGGGAGCAGTGCG 62.767 72.222 10.00 0.00 0.00 5.34
9850 11768 4.767255 CGGACCAGGGAGCAGTGC 62.767 72.222 7.13 7.13 0.00 4.40
9851 11769 4.767255 GCGGACCAGGGAGCAGTG 62.767 72.222 0.00 0.00 0.00 3.66
9862 11780 0.249398 ACAGACACTAATGGCGGACC 59.751 55.000 0.00 0.00 39.76 4.46
9863 11781 2.094762 AACAGACACTAATGGCGGAC 57.905 50.000 0.00 0.00 39.76 4.79
9864 11782 2.851263 AAACAGACACTAATGGCGGA 57.149 45.000 0.00 0.00 39.76 5.54
9865 11783 3.915437 AAAAACAGACACTAATGGCGG 57.085 42.857 0.00 0.00 39.76 6.13


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.