Multiple sequence alignment - TraesCS2D01G564300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G564300 chr2D 100.000 4098 0 0 1 4098 634879672 634875575 0.000000e+00 7568.0
1 TraesCS2D01G564300 chr2A 87.790 1638 141 35 899 2489 778423071 778424696 0.000000e+00 1862.0
2 TraesCS2D01G564300 chr2A 92.904 761 40 7 3341 4098 778425384 778426133 0.000000e+00 1094.0
3 TraesCS2D01G564300 chr2A 89.698 563 32 11 2729 3288 778424829 778425368 0.000000e+00 695.0
4 TraesCS2D01G564300 chr2A 81.410 468 26 26 2 435 778422077 778422517 3.950000e-85 326.0
5 TraesCS2D01G564300 chr2A 91.765 85 5 1 2642 2724 778424702 778424786 2.590000e-22 117.0
6 TraesCS2D01G564300 chr2A 89.333 75 6 2 2541 2615 778424626 778424698 4.360000e-15 93.5
7 TraesCS2D01G564300 chr2A 84.615 91 14 0 3791 3881 24313791 24313701 1.570000e-14 91.6
8 TraesCS2D01G564300 chr2B 89.390 1197 90 23 1309 2489 778846831 778848006 0.000000e+00 1472.0
9 TraesCS2D01G564300 chr2B 95.039 766 29 4 3341 4098 778848700 778849464 0.000000e+00 1195.0
10 TraesCS2D01G564300 chr2B 92.986 442 21 7 2726 3158 778848135 778848575 1.610000e-178 636.0
11 TraesCS2D01G564300 chr2B 86.047 172 18 2 965 1130 778846470 778846641 3.250000e-41 180.0
12 TraesCS2D01G564300 chr2B 80.374 214 21 11 190 399 778845092 778845288 4.270000e-30 143.0
13 TraesCS2D01G564300 chr2B 89.381 113 8 3 1 110 778844579 778844690 5.520000e-29 139.0
14 TraesCS2D01G564300 chr2B 88.034 117 6 4 747 862 778846285 778846394 9.240000e-27 132.0
15 TraesCS2D01G564300 chr2B 88.235 85 8 1 2642 2724 778848012 778848096 2.610000e-17 100.0
16 TraesCS2D01G564300 chr2B 88.235 68 4 2 748 815 778846238 778846301 1.220000e-10 78.7
17 TraesCS2D01G564300 chr2B 81.443 97 8 9 3200 3288 778848590 778848684 2.040000e-08 71.3
18 TraesCS2D01G564300 chr4A 92.208 77 6 0 2229 2305 723509630 723509706 4.330000e-20 110.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G564300 chr2D 634875575 634879672 4097 True 7568.000000 7568 100.000000 1 4098 1 chr2D.!!$R1 4097
1 TraesCS2D01G564300 chr2A 778422077 778426133 4056 False 697.916667 1862 88.816667 2 4098 6 chr2A.!!$F1 4096
2 TraesCS2D01G564300 chr2B 778844579 778849464 4885 False 414.700000 1472 87.916400 1 4098 10 chr2B.!!$F1 4097

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
738 1185 0.110486 GACCCTGACCTGCTCCAAAA 59.890 55.0 0.0 0.0 0.0 2.44 F
960 2159 0.169672 CGCCTTGCTGAATGTTCCTG 59.830 55.0 0.0 0.0 0.0 3.86 F
2431 3727 0.035630 GTGCTTCTCATCACCTGCCT 60.036 55.0 0.0 0.0 0.0 4.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1696 2977 1.336755 ACACCAAAATGCGGTTGTCTC 59.663 47.619 0.0 0.0 33.25 3.36 R
2776 4121 2.087646 GGATCAACCAGTTCCTTGAGC 58.912 52.381 0.0 0.0 38.79 4.26 R
3875 5238 0.107508 CCATCGCAGTCATTCAGGGT 60.108 55.000 0.0 0.0 0.00 4.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
152 452 5.010719 CGGGCTACAGGAGAAATCTACATAA 59.989 44.000 0.00 0.00 0.00 1.90
153 453 6.224584 GGGCTACAGGAGAAATCTACATAAC 58.775 44.000 0.00 0.00 0.00 1.89
154 454 6.042208 GGGCTACAGGAGAAATCTACATAACT 59.958 42.308 0.00 0.00 0.00 2.24
155 455 7.149307 GGCTACAGGAGAAATCTACATAACTC 58.851 42.308 0.00 0.00 0.00 3.01
157 457 8.198109 GCTACAGGAGAAATCTACATAACTCAA 58.802 37.037 0.00 0.00 0.00 3.02
158 458 9.743057 CTACAGGAGAAATCTACATAACTCAAG 57.257 37.037 0.00 0.00 0.00 3.02
230 570 1.355720 CCATTTCCTCTCCCTGTGGTT 59.644 52.381 0.00 0.00 0.00 3.67
236 576 2.672996 CTCCCTGTGGTTTGCCGG 60.673 66.667 0.00 0.00 37.67 6.13
269 612 3.893763 CGCCGCCGATCTCACTCT 61.894 66.667 0.00 0.00 36.29 3.24
277 620 2.925724 CCGATCTCACTCTACTCACCT 58.074 52.381 0.00 0.00 0.00 4.00
285 628 2.757868 CACTCTACTCACCTGGGAAGAG 59.242 54.545 10.34 10.34 37.17 2.85
286 629 2.650322 ACTCTACTCACCTGGGAAGAGA 59.350 50.000 16.58 8.74 35.53 3.10
287 630 3.076182 ACTCTACTCACCTGGGAAGAGAA 59.924 47.826 16.58 4.66 35.53 2.87
288 631 3.432378 TCTACTCACCTGGGAAGAGAAC 58.568 50.000 16.58 0.00 33.69 3.01
289 632 2.103153 ACTCACCTGGGAAGAGAACA 57.897 50.000 16.58 0.00 33.69 3.18
290 633 1.694696 ACTCACCTGGGAAGAGAACAC 59.305 52.381 16.58 0.00 33.69 3.32
291 634 1.694150 CTCACCTGGGAAGAGAACACA 59.306 52.381 0.00 0.00 0.00 3.72
292 635 1.416401 TCACCTGGGAAGAGAACACAC 59.584 52.381 0.00 0.00 0.00 3.82
293 636 1.140852 CACCTGGGAAGAGAACACACA 59.859 52.381 0.00 0.00 0.00 3.72
294 637 1.141053 ACCTGGGAAGAGAACACACAC 59.859 52.381 0.00 0.00 0.00 3.82
295 638 1.140852 CCTGGGAAGAGAACACACACA 59.859 52.381 0.00 0.00 0.00 3.72
296 639 2.213499 CTGGGAAGAGAACACACACAC 58.787 52.381 0.00 0.00 0.00 3.82
366 715 2.047655 CTGCCAGGTAAACGCCGA 60.048 61.111 0.00 0.00 0.00 5.54
430 779 7.110155 TCTTTATTAGCCACTCCTTACTTTGG 58.890 38.462 0.00 0.00 0.00 3.28
439 788 3.944087 CTCCTTACTTTGGAGTTGGAGG 58.056 50.000 14.85 7.95 43.78 4.30
440 789 3.583086 CTCCTTACTTTGGAGTTGGAGGA 59.417 47.826 14.85 10.60 43.78 3.71
441 790 4.175962 TCCTTACTTTGGAGTTGGAGGAT 58.824 43.478 0.00 0.00 35.31 3.24
442 791 4.601857 TCCTTACTTTGGAGTTGGAGGATT 59.398 41.667 0.00 0.00 35.31 3.01
443 792 4.944317 CCTTACTTTGGAGTTGGAGGATTC 59.056 45.833 0.00 0.00 37.33 2.52
444 793 3.059352 ACTTTGGAGTTGGAGGATTCG 57.941 47.619 0.00 0.00 29.87 3.34
445 794 1.740025 CTTTGGAGTTGGAGGATTCGC 59.260 52.381 0.00 0.00 0.00 4.70
447 796 0.537188 TGGAGTTGGAGGATTCGCTC 59.463 55.000 0.00 0.00 0.00 5.03
448 797 0.179070 GGAGTTGGAGGATTCGCTCC 60.179 60.000 12.00 12.00 45.33 4.70
458 807 3.971032 GGATTCGCTCCATACTTTTGG 57.029 47.619 0.00 0.00 44.26 3.28
459 808 3.541632 GGATTCGCTCCATACTTTTGGA 58.458 45.455 0.00 0.00 44.26 3.53
472 821 9.802039 TCCATACTTTTGGAGTAGTATTTGTTT 57.198 29.630 0.00 0.00 43.79 2.83
534 886 1.078143 GACAAGCCTCCATCCGCTT 60.078 57.895 0.00 0.00 46.06 4.68
568 920 2.175202 TCTGCACCTTCTCTCTTCTCC 58.825 52.381 0.00 0.00 0.00 3.71
573 925 0.380378 CCTTCTCTCTTCTCCGCTCG 59.620 60.000 0.00 0.00 0.00 5.03
611 989 3.134458 GCTGCTAATACTTGCTCCGATT 58.866 45.455 0.00 0.00 0.00 3.34
627 1007 3.769300 TCCGATTTGAGATCCAGACTGAA 59.231 43.478 3.32 0.00 0.00 3.02
636 1016 0.249868 TCCAGACTGAACTGCAACCG 60.250 55.000 3.32 0.00 36.67 4.44
709 1156 5.988561 TGTTGGTTTGAGGTTAATTTCATGC 59.011 36.000 0.00 0.00 0.00 4.06
727 1174 2.378634 CCCCATCCCTGACCCTGAC 61.379 68.421 0.00 0.00 0.00 3.51
736 1183 1.461268 TGACCCTGACCTGCTCCAA 60.461 57.895 0.00 0.00 0.00 3.53
737 1184 1.059584 TGACCCTGACCTGCTCCAAA 61.060 55.000 0.00 0.00 0.00 3.28
738 1185 0.110486 GACCCTGACCTGCTCCAAAA 59.890 55.000 0.00 0.00 0.00 2.44
739 1186 0.178990 ACCCTGACCTGCTCCAAAAC 60.179 55.000 0.00 0.00 0.00 2.43
740 1187 0.178992 CCCTGACCTGCTCCAAAACA 60.179 55.000 0.00 0.00 0.00 2.83
741 1188 1.548582 CCCTGACCTGCTCCAAAACAT 60.549 52.381 0.00 0.00 0.00 2.71
742 1189 1.542915 CCTGACCTGCTCCAAAACATG 59.457 52.381 0.00 0.00 0.00 3.21
743 1190 2.507484 CTGACCTGCTCCAAAACATGA 58.493 47.619 0.00 0.00 0.00 3.07
744 1191 2.486982 CTGACCTGCTCCAAAACATGAG 59.513 50.000 0.00 0.00 0.00 2.90
745 1192 1.200948 GACCTGCTCCAAAACATGAGC 59.799 52.381 0.00 4.61 40.74 4.26
746 1193 1.250328 CCTGCTCCAAAACATGAGCA 58.750 50.000 12.98 12.98 46.77 4.26
777 1847 2.924421 CAACTTATTGGCCTCTCCTCC 58.076 52.381 3.32 0.00 35.26 4.30
778 1848 2.507471 CAACTTATTGGCCTCTCCTCCT 59.493 50.000 3.32 0.00 35.26 3.69
779 1849 2.122768 ACTTATTGGCCTCTCCTCCTG 58.877 52.381 3.32 0.00 35.26 3.86
780 1850 2.293184 ACTTATTGGCCTCTCCTCCTGA 60.293 50.000 3.32 0.00 35.26 3.86
781 1851 2.568546 TATTGGCCTCTCCTCCTGAA 57.431 50.000 3.32 0.00 35.26 3.02
782 1852 1.904440 ATTGGCCTCTCCTCCTGAAT 58.096 50.000 3.32 0.00 35.26 2.57
783 1853 1.673767 TTGGCCTCTCCTCCTGAATT 58.326 50.000 3.32 0.00 35.26 2.17
786 1856 2.025887 TGGCCTCTCCTCCTGAATTTTC 60.026 50.000 3.32 0.00 35.26 2.29
795 1865 6.040842 TCTCCTCCTGAATTTTCCAGTTTTTG 59.959 38.462 0.00 0.00 0.00 2.44
853 2050 8.695456 AGTTTCAGTTTCTATGAAATGGTTGTT 58.305 29.630 4.60 0.00 45.54 2.83
870 2067 4.335594 GGTTGTTAGACTTGAGCTGTGTTT 59.664 41.667 0.00 0.00 0.00 2.83
871 2068 5.526111 GGTTGTTAGACTTGAGCTGTGTTTA 59.474 40.000 0.00 0.00 0.00 2.01
873 2070 6.598753 TGTTAGACTTGAGCTGTGTTTAAC 57.401 37.500 0.00 4.07 34.19 2.01
874 2071 6.110033 TGTTAGACTTGAGCTGTGTTTAACA 58.890 36.000 15.83 15.83 38.24 2.41
876 2073 5.741388 AGACTTGAGCTGTGTTTAACAAG 57.259 39.130 0.00 0.00 38.67 3.16
877 2074 4.576463 AGACTTGAGCTGTGTTTAACAAGG 59.424 41.667 0.00 0.00 38.67 3.61
878 2075 3.066760 ACTTGAGCTGTGTTTAACAAGGC 59.933 43.478 13.02 13.02 38.67 4.35
879 2076 2.930950 TGAGCTGTGTTTAACAAGGCT 58.069 42.857 20.00 20.00 39.59 4.58
880 2077 3.287222 TGAGCTGTGTTTAACAAGGCTT 58.713 40.909 20.54 0.00 37.96 4.35
881 2078 3.699038 TGAGCTGTGTTTAACAAGGCTTT 59.301 39.130 20.54 6.35 37.96 3.51
883 2080 3.068165 AGCTGTGTTTAACAAGGCTTTCC 59.932 43.478 16.22 0.00 38.67 3.13
885 2082 4.610945 CTGTGTTTAACAAGGCTTTCCTG 58.389 43.478 0.00 0.00 43.40 3.86
886 2083 4.274147 TGTGTTTAACAAGGCTTTCCTGA 58.726 39.130 0.00 0.00 43.40 3.86
887 2084 4.338118 TGTGTTTAACAAGGCTTTCCTGAG 59.662 41.667 0.00 0.00 43.40 3.35
888 2085 4.338400 GTGTTTAACAAGGCTTTCCTGAGT 59.662 41.667 0.00 0.00 43.40 3.41
894 2091 0.980423 AGGCTTTCCTGAGTCCTGAC 59.020 55.000 0.00 0.00 42.34 3.51
897 2094 1.609320 GCTTTCCTGAGTCCTGACCAC 60.609 57.143 0.00 0.00 0.00 4.16
905 2102 2.035961 TGAGTCCTGACCACTTTTCTCG 59.964 50.000 0.00 0.00 0.00 4.04
913 2110 1.065551 ACCACTTTTCTCGCTTGCAAC 59.934 47.619 0.00 0.00 0.00 4.17
930 2127 4.989044 TGCAACATGTTCATGCAGAATAG 58.011 39.130 17.58 0.38 44.52 1.73
931 2128 4.701171 TGCAACATGTTCATGCAGAATAGA 59.299 37.500 17.58 0.00 44.52 1.98
932 2129 5.163693 TGCAACATGTTCATGCAGAATAGAG 60.164 40.000 17.58 0.00 44.52 2.43
933 2130 5.271625 CAACATGTTCATGCAGAATAGAGC 58.728 41.667 8.48 0.00 38.76 4.09
934 2131 3.558829 ACATGTTCATGCAGAATAGAGCG 59.441 43.478 12.00 0.00 38.76 5.03
935 2132 3.251479 TGTTCATGCAGAATAGAGCGT 57.749 42.857 0.00 0.00 38.76 5.07
937 2134 2.932614 GTTCATGCAGAATAGAGCGTGT 59.067 45.455 6.52 0.00 45.51 4.49
938 2135 2.814269 TCATGCAGAATAGAGCGTGTC 58.186 47.619 6.52 0.00 45.51 3.67
939 2136 1.520174 CATGCAGAATAGAGCGTGTCG 59.480 52.381 0.00 0.00 41.58 4.35
960 2159 0.169672 CGCCTTGCTGAATGTTCCTG 59.830 55.000 0.00 0.00 0.00 3.86
961 2160 1.251251 GCCTTGCTGAATGTTCCTGT 58.749 50.000 0.00 0.00 0.00 4.00
995 2194 1.470098 CTGCCACCATAAGCAACTGAC 59.530 52.381 0.00 0.00 38.82 3.51
1044 2258 3.299503 AGCCAAGAAACAACAGGACAAT 58.700 40.909 0.00 0.00 0.00 2.71
1073 2287 4.000928 ACTCCCATAGACAACAGGAGAT 57.999 45.455 11.17 0.00 45.83 2.75
1078 2292 5.129485 TCCCATAGACAACAGGAGATTCTTC 59.871 44.000 0.00 0.00 0.00 2.87
1081 2295 4.278975 AGACAACAGGAGATTCTTCACC 57.721 45.455 0.00 0.00 33.15 4.02
1086 2300 1.849039 CAGGAGATTCTTCACCCCCAT 59.151 52.381 0.00 0.00 33.41 4.00
1093 2307 0.621571 TCTTCACCCCCATAGCAGCT 60.622 55.000 0.00 0.00 0.00 4.24
1097 2311 1.211949 TCACCCCCATAGCAGCTTAAC 59.788 52.381 0.00 0.00 0.00 2.01
1105 2319 3.181469 CCATAGCAGCTTAACCGGTAAGA 60.181 47.826 20.96 4.20 41.70 2.10
1107 2321 1.066358 AGCAGCTTAACCGGTAAGACC 60.066 52.381 20.96 11.41 41.70 3.85
1111 2325 3.698040 CAGCTTAACCGGTAAGACCTCTA 59.302 47.826 20.96 1.80 41.70 2.43
1117 2331 3.716431 ACCGGTAAGACCTCTATTTGGA 58.284 45.455 4.49 0.00 35.66 3.53
1131 2345 8.815912 ACCTCTATTTGGATTGCAAAATTTACT 58.184 29.630 1.71 0.00 0.00 2.24
1141 2355 5.261209 TGCAAAATTTACTGCACAGAGTT 57.739 34.783 12.44 0.00 43.44 3.01
1142 2356 5.659463 TGCAAAATTTACTGCACAGAGTTT 58.341 33.333 12.44 0.00 43.44 2.66
1144 2358 6.695278 TGCAAAATTTACTGCACAGAGTTTAC 59.305 34.615 12.44 0.00 43.44 2.01
1145 2359 6.695278 GCAAAATTTACTGCACAGAGTTTACA 59.305 34.615 9.48 0.00 38.48 2.41
1146 2360 7.096477 GCAAAATTTACTGCACAGAGTTTACAG 60.096 37.037 9.48 0.00 38.48 2.74
1147 2361 7.801716 AAATTTACTGCACAGAGTTTACAGA 57.198 32.000 4.31 0.00 32.67 3.41
1152 2366 4.516698 ACTGCACAGAGTTTACAGATTTGG 59.483 41.667 4.31 0.00 32.67 3.28
1162 2376 8.157476 AGAGTTTACAGATTTGGTGTTATGACT 58.843 33.333 0.00 0.00 0.00 3.41
1163 2377 8.691661 AGTTTACAGATTTGGTGTTATGACTT 57.308 30.769 0.00 0.00 0.00 3.01
1177 2391 7.023575 GTGTTATGACTTTGTGATGCCTTAAG 58.976 38.462 0.00 0.00 0.00 1.85
1232 2495 3.250762 CCACACAATTACAGATATGCCGG 59.749 47.826 0.00 0.00 0.00 6.13
1267 2535 9.463443 GTTCAACTTTGCACTTTACTTATCATT 57.537 29.630 0.00 0.00 0.00 2.57
1306 2575 9.104965 CTGGACATAAATAACGAAACATCCTTA 57.895 33.333 0.00 0.00 0.00 2.69
1308 2588 8.340443 GGACATAAATAACGAAACATCCTTACC 58.660 37.037 0.00 0.00 0.00 2.85
1313 2593 8.980143 AAATAACGAAACATCCTTACCAAATG 57.020 30.769 0.00 0.00 0.00 2.32
1315 2595 6.399639 AACGAAACATCCTTACCAAATGTT 57.600 33.333 0.00 0.00 43.53 2.71
1316 2596 5.768317 ACGAAACATCCTTACCAAATGTTG 58.232 37.500 1.13 0.00 41.47 3.33
1574 2855 4.202524 ACCCTACCAAACAAGCAAGATGTA 60.203 41.667 0.00 0.00 0.00 2.29
1604 2885 3.439154 AGTTCTCTCTGCTGAATCCAGA 58.561 45.455 0.00 0.00 43.02 3.86
1610 2891 0.907486 CTGCTGAATCCAGACAGGGA 59.093 55.000 0.00 0.00 43.02 4.20
1622 2903 4.537688 TCCAGACAGGGAATCAGAGAATTT 59.462 41.667 0.00 0.00 38.24 1.82
1696 2977 3.777925 CGGCTGTTGCGTCGAAGG 61.778 66.667 0.00 0.00 40.82 3.46
1771 3060 4.471747 TGCACTGTTGGGTATGAACCTATA 59.528 41.667 0.00 0.00 45.95 1.31
1803 3092 9.916397 GTCACTATATTGACAAGGTTATTTTCG 57.084 33.333 16.10 0.00 44.62 3.46
1833 3122 7.112984 CGACTTTTAACATTTTACCTTGTGCTC 59.887 37.037 0.00 0.00 0.00 4.26
1916 3205 1.597854 TGTTGCCAGAGGTCTTGCG 60.598 57.895 0.00 0.00 37.43 4.85
1955 3244 1.153568 ATCACCGATCGTGCACAGG 60.154 57.895 18.64 15.80 42.69 4.00
1988 3277 5.926542 GGCTAGCAATATACTCATCGACAAA 59.073 40.000 18.24 0.00 0.00 2.83
2201 3497 4.323028 CCATTGTCTAGTTGCTCCTTCTCA 60.323 45.833 0.00 0.00 0.00 3.27
2420 3716 6.045318 TCTTGCTTACTATCATGTGCTTCTC 58.955 40.000 0.00 0.00 0.00 2.87
2423 3719 5.987953 TGCTTACTATCATGTGCTTCTCATC 59.012 40.000 0.00 0.00 0.00 2.92
2424 3720 5.987953 GCTTACTATCATGTGCTTCTCATCA 59.012 40.000 0.00 0.00 0.00 3.07
2425 3721 6.073873 GCTTACTATCATGTGCTTCTCATCAC 60.074 42.308 0.00 0.00 0.00 3.06
2426 3722 4.701765 ACTATCATGTGCTTCTCATCACC 58.298 43.478 0.00 0.00 32.51 4.02
2427 3723 3.928005 ATCATGTGCTTCTCATCACCT 57.072 42.857 0.00 0.00 32.51 4.00
2428 3724 2.981898 TCATGTGCTTCTCATCACCTG 58.018 47.619 0.00 0.00 32.52 4.00
2429 3725 1.400846 CATGTGCTTCTCATCACCTGC 59.599 52.381 0.00 0.00 32.51 4.85
2430 3726 0.321919 TGTGCTTCTCATCACCTGCC 60.322 55.000 0.00 0.00 32.51 4.85
2431 3727 0.035630 GTGCTTCTCATCACCTGCCT 60.036 55.000 0.00 0.00 0.00 4.75
2432 3728 1.208052 GTGCTTCTCATCACCTGCCTA 59.792 52.381 0.00 0.00 0.00 3.93
2433 3729 2.121948 TGCTTCTCATCACCTGCCTAT 58.878 47.619 0.00 0.00 0.00 2.57
2434 3730 2.103771 TGCTTCTCATCACCTGCCTATC 59.896 50.000 0.00 0.00 0.00 2.08
2435 3731 2.368221 GCTTCTCATCACCTGCCTATCT 59.632 50.000 0.00 0.00 0.00 1.98
2436 3732 3.803021 GCTTCTCATCACCTGCCTATCTG 60.803 52.174 0.00 0.00 0.00 2.90
2437 3733 3.037851 TCTCATCACCTGCCTATCTGT 57.962 47.619 0.00 0.00 0.00 3.41
2438 3734 4.184649 TCTCATCACCTGCCTATCTGTA 57.815 45.455 0.00 0.00 0.00 2.74
2439 3735 4.745351 TCTCATCACCTGCCTATCTGTAT 58.255 43.478 0.00 0.00 0.00 2.29
2440 3736 5.150715 TCTCATCACCTGCCTATCTGTATT 58.849 41.667 0.00 0.00 0.00 1.89
2441 3737 5.244851 TCTCATCACCTGCCTATCTGTATTC 59.755 44.000 0.00 0.00 0.00 1.75
2442 3738 4.284490 TCATCACCTGCCTATCTGTATTCC 59.716 45.833 0.00 0.00 0.00 3.01
2443 3739 3.653164 TCACCTGCCTATCTGTATTCCA 58.347 45.455 0.00 0.00 0.00 3.53
2444 3740 3.388024 TCACCTGCCTATCTGTATTCCAC 59.612 47.826 0.00 0.00 0.00 4.02
2445 3741 2.365617 ACCTGCCTATCTGTATTCCACG 59.634 50.000 0.00 0.00 0.00 4.94
2446 3742 2.628178 CCTGCCTATCTGTATTCCACGA 59.372 50.000 0.00 0.00 0.00 4.35
2447 3743 3.069586 CCTGCCTATCTGTATTCCACGAA 59.930 47.826 0.00 0.00 0.00 3.85
2448 3744 4.051922 CTGCCTATCTGTATTCCACGAAC 58.948 47.826 0.00 0.00 0.00 3.95
2449 3745 3.050619 GCCTATCTGTATTCCACGAACG 58.949 50.000 0.00 0.00 0.00 3.95
2450 3746 3.243301 GCCTATCTGTATTCCACGAACGA 60.243 47.826 0.14 0.00 0.00 3.85
2451 3747 4.735578 GCCTATCTGTATTCCACGAACGAA 60.736 45.833 0.14 0.00 0.00 3.85
2452 3748 5.529791 CCTATCTGTATTCCACGAACGAAT 58.470 41.667 0.14 0.00 34.40 3.34
2453 3749 6.675026 CCTATCTGTATTCCACGAACGAATA 58.325 40.000 0.14 0.00 32.32 1.75
2454 3750 6.581542 CCTATCTGTATTCCACGAACGAATAC 59.418 42.308 18.54 18.54 46.48 1.89
2458 3754 5.961395 GTATTCCACGAACGAATACATGT 57.039 39.130 19.57 2.69 45.97 3.21
2459 3755 6.340537 GTATTCCACGAACGAATACATGTT 57.659 37.500 19.57 0.00 45.97 2.71
2460 3756 5.873179 ATTCCACGAACGAATACATGTTT 57.127 34.783 2.30 0.00 0.00 2.83
2461 3757 4.655440 TCCACGAACGAATACATGTTTG 57.345 40.909 2.30 0.00 35.91 2.93
2462 3758 4.059511 TCCACGAACGAATACATGTTTGT 58.940 39.130 2.30 0.00 42.08 2.83
2465 3761 5.856126 ACGAACGAATACATGTTTGTGAT 57.144 34.783 2.30 0.00 40.34 3.06
2466 3762 6.954616 ACGAACGAATACATGTTTGTGATA 57.045 33.333 2.30 0.00 40.34 2.15
2467 3763 6.758149 ACGAACGAATACATGTTTGTGATAC 58.242 36.000 2.30 0.00 40.34 2.24
2468 3764 6.366604 ACGAACGAATACATGTTTGTGATACA 59.633 34.615 2.30 0.00 40.34 2.29
2469 3765 6.894517 CGAACGAATACATGTTTGTGATACAG 59.105 38.462 2.30 0.00 36.53 2.74
2470 3766 7.411480 CGAACGAATACATGTTTGTGATACAGT 60.411 37.037 2.30 0.00 36.53 3.55
2471 3767 7.667043 ACGAATACATGTTTGTGATACAGTT 57.333 32.000 2.30 0.00 36.53 3.16
2472 3768 8.094798 ACGAATACATGTTTGTGATACAGTTT 57.905 30.769 2.30 0.00 36.53 2.66
2473 3769 8.227791 ACGAATACATGTTTGTGATACAGTTTC 58.772 33.333 2.30 0.00 36.53 2.78
2474 3770 8.227119 CGAATACATGTTTGTGATACAGTTTCA 58.773 33.333 2.30 0.00 36.53 2.69
2475 3771 9.546909 GAATACATGTTTGTGATACAGTTTCAG 57.453 33.333 2.30 0.00 36.53 3.02
2476 3772 8.846943 ATACATGTTTGTGATACAGTTTCAGA 57.153 30.769 2.30 0.00 36.53 3.27
2477 3773 7.566760 ACATGTTTGTGATACAGTTTCAGAA 57.433 32.000 0.00 0.15 33.85 3.02
2478 3774 7.995289 ACATGTTTGTGATACAGTTTCAGAAA 58.005 30.769 10.93 10.93 34.95 2.52
2479 3775 8.632679 ACATGTTTGTGATACAGTTTCAGAAAT 58.367 29.630 16.04 2.93 38.24 2.17
2480 3776 9.121517 CATGTTTGTGATACAGTTTCAGAAATC 57.878 33.333 16.04 11.56 38.24 2.17
2481 3777 8.219546 TGTTTGTGATACAGTTTCAGAAATCA 57.780 30.769 16.04 13.27 38.24 2.57
2482 3778 8.344831 TGTTTGTGATACAGTTTCAGAAATCAG 58.655 33.333 16.04 0.00 38.24 2.90
2483 3779 8.559536 GTTTGTGATACAGTTTCAGAAATCAGA 58.440 33.333 16.04 0.00 38.24 3.27
2484 3780 8.675705 TTGTGATACAGTTTCAGAAATCAGAA 57.324 30.769 0.00 0.90 0.00 3.02
2485 3781 8.087982 TGTGATACAGTTTCAGAAATCAGAAC 57.912 34.615 0.00 0.00 0.00 3.01
2486 3782 7.714813 TGTGATACAGTTTCAGAAATCAGAACA 59.285 33.333 0.00 0.00 0.00 3.18
2487 3783 8.559536 GTGATACAGTTTCAGAAATCAGAACAA 58.440 33.333 0.00 0.00 0.00 2.83
2488 3784 8.559536 TGATACAGTTTCAGAAATCAGAACAAC 58.440 33.333 0.00 0.00 0.00 3.32
2489 3785 5.810525 ACAGTTTCAGAAATCAGAACAACG 58.189 37.500 0.00 0.00 0.00 4.10
2490 3786 4.672413 CAGTTTCAGAAATCAGAACAACGC 59.328 41.667 0.00 0.00 0.00 4.84
2491 3787 4.335315 AGTTTCAGAAATCAGAACAACGCA 59.665 37.500 0.00 0.00 0.00 5.24
2492 3788 4.472691 TTCAGAAATCAGAACAACGCAG 57.527 40.909 0.00 0.00 0.00 5.18
2534 3830 7.801716 AAAAAGCTGAAGACATGTACTGTAA 57.198 32.000 0.00 0.00 38.54 2.41
2535 3831 7.986085 AAAAGCTGAAGACATGTACTGTAAT 57.014 32.000 0.00 0.00 38.54 1.89
2536 3832 7.986085 AAAGCTGAAGACATGTACTGTAATT 57.014 32.000 0.00 0.00 38.54 1.40
2537 3833 7.602517 AAGCTGAAGACATGTACTGTAATTC 57.397 36.000 0.00 5.49 38.54 2.17
2538 3834 6.701340 AGCTGAAGACATGTACTGTAATTCA 58.299 36.000 0.00 16.10 39.51 2.57
2540 3836 6.998338 CTGAAGACATGTACTGTAATTCAGC 58.002 40.000 22.39 5.64 45.33 4.26
2541 3837 6.815641 CTGAAGACATGTACTGTAATTCAGCT 59.184 38.462 22.39 0.00 45.33 4.24
2542 3838 7.332926 CTGAAGACATGTACTGTAATTCAGCTT 59.667 37.037 22.39 12.03 45.33 3.74
2581 3877 4.624024 GCATTCCACAAATGAAGACATGTG 59.376 41.667 1.15 0.00 46.54 3.21
2589 3888 6.864685 CACAAATGAAGACATGTGCTGTAATT 59.135 34.615 1.15 0.00 43.42 1.40
2615 3914 9.677567 TCAGCTTTAAAATATCAGAACAACAAC 57.322 29.630 0.00 0.00 0.00 3.32
2616 3915 9.462174 CAGCTTTAAAATATCAGAACAACAACA 57.538 29.630 0.00 0.00 0.00 3.33
2628 3927 9.868277 ATCAGAACAACAACAAACTTTAATCAA 57.132 25.926 0.00 0.00 0.00 2.57
2629 3928 9.698309 TCAGAACAACAACAAACTTTAATCAAA 57.302 25.926 0.00 0.00 0.00 2.69
2724 4027 8.956426 CCTGACTTTATGCCAGTAAAAAGATTA 58.044 33.333 0.00 0.00 33.98 1.75
2776 4121 2.559440 GAGCTGTATGAAGCAGGGAAG 58.441 52.381 0.00 0.00 46.08 3.46
2947 4292 1.169577 TCAACGAGAGAGAGCTGACC 58.830 55.000 0.00 0.00 0.00 4.02
3129 4475 1.973812 GGAGGGTGGTCTGCTTTGC 60.974 63.158 0.00 0.00 0.00 3.68
3132 4478 1.228245 GGGTGGTCTGCTTTGCTCA 60.228 57.895 0.00 0.00 0.00 4.26
3133 4479 1.518903 GGGTGGTCTGCTTTGCTCAC 61.519 60.000 0.00 0.00 0.00 3.51
3136 4482 1.002033 GTGGTCTGCTTTGCTCACTTG 60.002 52.381 0.00 0.00 0.00 3.16
3138 4484 0.664761 GTCTGCTTTGCTCACTTGCA 59.335 50.000 0.00 0.00 41.65 4.08
3140 4486 1.958579 TCTGCTTTGCTCACTTGCATT 59.041 42.857 0.00 0.00 42.96 3.56
3144 4491 4.239304 TGCTTTGCTCACTTGCATTATTG 58.761 39.130 0.00 0.00 42.96 1.90
3153 4502 4.699735 TCACTTGCATTATTGTGTAGGGTG 59.300 41.667 0.00 0.00 0.00 4.61
3172 4521 2.101582 GTGACAGTACCATAGAGGGCAG 59.898 54.545 0.00 0.00 43.89 4.85
3173 4522 1.069358 GACAGTACCATAGAGGGCAGC 59.931 57.143 0.00 0.00 43.89 5.25
3174 4523 1.123077 CAGTACCATAGAGGGCAGCA 58.877 55.000 0.00 0.00 43.89 4.41
3175 4524 1.123928 AGTACCATAGAGGGCAGCAC 58.876 55.000 0.00 0.00 43.89 4.40
3176 4525 0.830648 GTACCATAGAGGGCAGCACA 59.169 55.000 0.00 0.00 43.89 4.57
3177 4526 1.417890 GTACCATAGAGGGCAGCACAT 59.582 52.381 0.00 0.00 43.89 3.21
3178 4527 1.806496 ACCATAGAGGGCAGCACATA 58.194 50.000 0.00 0.00 43.89 2.29
3179 4528 1.417890 ACCATAGAGGGCAGCACATAC 59.582 52.381 0.00 0.00 43.89 2.39
3180 4529 1.696336 CCATAGAGGGCAGCACATACT 59.304 52.381 0.00 0.00 0.00 2.12
3181 4530 2.105477 CCATAGAGGGCAGCACATACTT 59.895 50.000 0.00 0.00 0.00 2.24
3182 4531 3.324846 CCATAGAGGGCAGCACATACTTA 59.675 47.826 0.00 0.00 0.00 2.24
3183 4532 4.562347 CCATAGAGGGCAGCACATACTTAG 60.562 50.000 0.00 0.00 0.00 2.18
3184 4533 2.752030 AGAGGGCAGCACATACTTAGA 58.248 47.619 0.00 0.00 0.00 2.10
3185 4534 3.312890 AGAGGGCAGCACATACTTAGAT 58.687 45.455 0.00 0.00 0.00 1.98
3186 4535 4.483950 AGAGGGCAGCACATACTTAGATA 58.516 43.478 0.00 0.00 0.00 1.98
3187 4536 5.090139 AGAGGGCAGCACATACTTAGATAT 58.910 41.667 0.00 0.00 0.00 1.63
3188 4537 5.046735 AGAGGGCAGCACATACTTAGATATG 60.047 44.000 0.00 0.00 38.34 1.78
3189 4538 4.594920 AGGGCAGCACATACTTAGATATGT 59.405 41.667 0.00 0.00 44.84 2.29
3198 4547 5.755375 ACATACTTAGATATGTGCACTGTGC 59.245 40.000 25.15 25.15 42.84 4.57
3205 4554 3.360340 GTGCACTGTGCCTGCTCC 61.360 66.667 28.17 7.04 44.23 4.70
3211 4560 1.375652 CTGTGCCTGCTCCTGAGTG 60.376 63.158 0.00 0.00 0.00 3.51
3213 4562 1.670406 GTGCCTGCTCCTGAGTGTG 60.670 63.158 0.00 0.00 0.00 3.82
3214 4563 2.142761 TGCCTGCTCCTGAGTGTGT 61.143 57.895 0.00 0.00 0.00 3.72
3216 4565 0.536006 GCCTGCTCCTGAGTGTGTTT 60.536 55.000 0.00 0.00 0.00 2.83
3217 4566 1.233019 CCTGCTCCTGAGTGTGTTTG 58.767 55.000 0.00 0.00 0.00 2.93
3221 4570 1.599542 GCTCCTGAGTGTGTTTGTGTC 59.400 52.381 0.00 0.00 0.00 3.67
3239 4589 1.086696 TCAATGCGGCAAGTAGAAGC 58.913 50.000 6.82 0.00 0.00 3.86
3247 4597 3.869246 GCGGCAAGTAGAAGCTGTAAATA 59.131 43.478 0.00 0.00 39.31 1.40
3253 4608 8.766151 GGCAAGTAGAAGCTGTAAATAATAGAC 58.234 37.037 0.00 0.00 0.00 2.59
3296 4651 5.927954 ATGTAAAATTGCTGCTTGTTTGG 57.072 34.783 0.00 0.00 0.00 3.28
3297 4652 5.016051 TGTAAAATTGCTGCTTGTTTGGA 57.984 34.783 0.00 0.00 0.00 3.53
3298 4653 4.808364 TGTAAAATTGCTGCTTGTTTGGAC 59.192 37.500 0.00 3.18 0.00 4.02
3299 4654 3.540314 AAATTGCTGCTTGTTTGGACA 57.460 38.095 0.00 0.00 0.00 4.02
3300 4655 2.806608 ATTGCTGCTTGTTTGGACAG 57.193 45.000 0.00 0.00 37.04 3.51
3304 4659 2.060326 CTGCTTGTTTGGACAGCATG 57.940 50.000 0.00 0.00 46.00 4.06
3305 4660 1.610038 CTGCTTGTTTGGACAGCATGA 59.390 47.619 0.00 0.00 39.69 3.07
3306 4661 2.030371 TGCTTGTTTGGACAGCATGAA 58.970 42.857 0.00 0.00 39.69 2.57
3307 4662 2.034939 TGCTTGTTTGGACAGCATGAAG 59.965 45.455 0.00 0.00 39.69 3.02
3308 4663 2.035066 GCTTGTTTGGACAGCATGAAGT 59.965 45.455 0.00 0.00 39.69 3.01
3309 4664 3.635331 CTTGTTTGGACAGCATGAAGTG 58.365 45.455 0.00 0.00 39.69 3.16
3310 4665 1.955778 TGTTTGGACAGCATGAAGTGG 59.044 47.619 0.00 0.00 39.69 4.00
3311 4666 2.229792 GTTTGGACAGCATGAAGTGGA 58.770 47.619 0.00 0.00 39.69 4.02
3312 4667 2.189594 TTGGACAGCATGAAGTGGAG 57.810 50.000 0.00 0.00 39.69 3.86
3313 4668 1.059098 TGGACAGCATGAAGTGGAGT 58.941 50.000 0.00 0.00 39.69 3.85
3314 4669 2.256306 TGGACAGCATGAAGTGGAGTA 58.744 47.619 0.00 0.00 39.69 2.59
3315 4670 2.234661 TGGACAGCATGAAGTGGAGTAG 59.765 50.000 0.00 0.00 39.69 2.57
3316 4671 2.234908 GGACAGCATGAAGTGGAGTAGT 59.765 50.000 0.00 0.00 39.69 2.73
3317 4672 3.307059 GGACAGCATGAAGTGGAGTAGTT 60.307 47.826 0.00 0.00 39.69 2.24
3318 4673 3.668447 ACAGCATGAAGTGGAGTAGTTG 58.332 45.455 0.00 0.00 39.69 3.16
3319 4674 3.324846 ACAGCATGAAGTGGAGTAGTTGA 59.675 43.478 0.00 0.00 39.69 3.18
3320 4675 4.202357 ACAGCATGAAGTGGAGTAGTTGAA 60.202 41.667 0.00 0.00 39.69 2.69
3321 4676 4.940046 CAGCATGAAGTGGAGTAGTTGAAT 59.060 41.667 0.00 0.00 39.69 2.57
3322 4677 6.108687 CAGCATGAAGTGGAGTAGTTGAATA 58.891 40.000 0.00 0.00 39.69 1.75
3323 4678 6.257411 CAGCATGAAGTGGAGTAGTTGAATAG 59.743 42.308 0.00 0.00 39.69 1.73
3324 4679 5.007136 GCATGAAGTGGAGTAGTTGAATAGC 59.993 44.000 0.00 0.00 0.00 2.97
3325 4680 5.738619 TGAAGTGGAGTAGTTGAATAGCA 57.261 39.130 0.00 0.00 0.00 3.49
3326 4681 6.299805 TGAAGTGGAGTAGTTGAATAGCAT 57.700 37.500 0.00 0.00 0.00 3.79
3327 4682 6.711277 TGAAGTGGAGTAGTTGAATAGCATT 58.289 36.000 0.00 0.00 0.00 3.56
3328 4683 7.168219 TGAAGTGGAGTAGTTGAATAGCATTT 58.832 34.615 0.00 0.00 0.00 2.32
3329 4684 6.992063 AGTGGAGTAGTTGAATAGCATTTG 57.008 37.500 0.00 0.00 0.00 2.32
3330 4685 5.355350 AGTGGAGTAGTTGAATAGCATTTGC 59.645 40.000 0.00 0.00 42.49 3.68
3331 4686 5.123820 GTGGAGTAGTTGAATAGCATTTGCA 59.876 40.000 5.20 0.00 45.16 4.08
3332 4687 5.355071 TGGAGTAGTTGAATAGCATTTGCAG 59.645 40.000 5.20 0.00 45.16 4.41
3333 4688 5.586243 GGAGTAGTTGAATAGCATTTGCAGA 59.414 40.000 5.20 0.00 45.16 4.26
3334 4689 6.238320 GGAGTAGTTGAATAGCATTTGCAGAG 60.238 42.308 5.20 0.00 45.16 3.35
3335 4690 6.176183 AGTAGTTGAATAGCATTTGCAGAGT 58.824 36.000 5.20 0.00 45.16 3.24
3336 4691 5.557891 AGTTGAATAGCATTTGCAGAGTC 57.442 39.130 5.20 2.10 45.16 3.36
3337 4692 5.005740 AGTTGAATAGCATTTGCAGAGTCA 58.994 37.500 5.20 4.64 45.16 3.41
3338 4693 5.651139 AGTTGAATAGCATTTGCAGAGTCAT 59.349 36.000 5.20 0.00 45.16 3.06
3339 4694 5.746307 TGAATAGCATTTGCAGAGTCATC 57.254 39.130 5.20 0.00 45.16 2.92
3356 4711 3.059120 GTCATCAATCAGGCATGTCATCG 60.059 47.826 0.00 0.00 0.00 3.84
3506 4861 4.382470 GCTGATCGATACATAGCCATCCTT 60.382 45.833 0.00 0.00 0.00 3.36
3507 4862 5.077134 TGATCGATACATAGCCATCCTTG 57.923 43.478 0.00 0.00 0.00 3.61
3508 4863 3.961480 TCGATACATAGCCATCCTTGG 57.039 47.619 0.00 0.00 46.66 3.61
3511 4866 3.244215 CGATACATAGCCATCCTTGGTGT 60.244 47.826 0.00 0.00 45.57 4.16
3552 4908 0.251209 TACAGGACAGGCGACACTCT 60.251 55.000 0.00 0.00 0.00 3.24
3568 4924 5.872617 CGACACTCTGGGTATTGAAAACATA 59.127 40.000 0.00 0.00 0.00 2.29
3836 5199 2.604912 TGAGCTTCACTAGGACCTGA 57.395 50.000 3.53 0.00 0.00 3.86
3956 5319 3.214328 GGTAGCGATTTCATGTGGGATT 58.786 45.455 0.00 0.00 0.00 3.01
4019 5382 3.524095 TGGAATTTCTCCTGGCTTTCA 57.476 42.857 0.00 0.00 45.64 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 23 7.048629 AGATGATGATACAACTAGTGGACAG 57.951 40.000 3.64 0.00 0.00 3.51
152 452 2.069165 GAGGTGGTTGGGGCTTGAGT 62.069 60.000 0.00 0.00 0.00 3.41
153 453 1.303643 GAGGTGGTTGGGGCTTGAG 60.304 63.158 0.00 0.00 0.00 3.02
154 454 2.840753 GGAGGTGGTTGGGGCTTGA 61.841 63.158 0.00 0.00 0.00 3.02
155 455 2.283173 GGAGGTGGTTGGGGCTTG 60.283 66.667 0.00 0.00 0.00 4.01
157 457 4.617595 AGGGAGGTGGTTGGGGCT 62.618 66.667 0.00 0.00 0.00 5.19
158 458 4.048470 GAGGGAGGTGGTTGGGGC 62.048 72.222 0.00 0.00 0.00 5.80
264 607 2.757868 CTCTTCCCAGGTGAGTAGAGTG 59.242 54.545 0.00 0.00 0.00 3.51
269 612 2.897969 GTGTTCTCTTCCCAGGTGAGTA 59.102 50.000 8.49 0.00 0.00 2.59
277 620 1.557371 TGTGTGTGTGTTCTCTTCCCA 59.443 47.619 0.00 0.00 0.00 4.37
285 628 1.130373 CTGGTGTGTGTGTGTGTGTTC 59.870 52.381 0.00 0.00 0.00 3.18
286 629 1.164411 CTGGTGTGTGTGTGTGTGTT 58.836 50.000 0.00 0.00 0.00 3.32
287 630 0.676466 CCTGGTGTGTGTGTGTGTGT 60.676 55.000 0.00 0.00 0.00 3.72
288 631 1.992233 GCCTGGTGTGTGTGTGTGTG 61.992 60.000 0.00 0.00 0.00 3.82
289 632 1.748879 GCCTGGTGTGTGTGTGTGT 60.749 57.895 0.00 0.00 0.00 3.72
290 633 1.311651 TTGCCTGGTGTGTGTGTGTG 61.312 55.000 0.00 0.00 0.00 3.82
291 634 1.001517 TTGCCTGGTGTGTGTGTGT 60.002 52.632 0.00 0.00 0.00 3.72
292 635 1.729276 CTTGCCTGGTGTGTGTGTG 59.271 57.895 0.00 0.00 0.00 3.82
293 636 2.120909 GCTTGCCTGGTGTGTGTGT 61.121 57.895 0.00 0.00 0.00 3.72
294 637 2.723746 GCTTGCCTGGTGTGTGTG 59.276 61.111 0.00 0.00 0.00 3.82
295 638 2.901840 CGCTTGCCTGGTGTGTGT 60.902 61.111 0.00 0.00 0.00 3.72
296 639 4.332637 GCGCTTGCCTGGTGTGTG 62.333 66.667 0.00 0.00 0.00 3.82
356 699 1.488525 GACAACGGTCGGCGTTTAC 59.511 57.895 6.85 0.00 33.68 2.01
357 700 3.935196 GACAACGGTCGGCGTTTA 58.065 55.556 6.85 0.00 33.68 2.01
366 715 1.866880 GCAACTGTAGACGACAACGGT 60.867 52.381 0.00 0.00 44.46 4.83
467 816 9.823647 TGAGAAGTTGGCAAAATAAATAAACAA 57.176 25.926 0.00 0.00 0.00 2.83
468 817 9.823647 TTGAGAAGTTGGCAAAATAAATAAACA 57.176 25.926 0.00 0.00 0.00 2.83
471 820 9.474920 CACTTGAGAAGTTGGCAAAATAAATAA 57.525 29.630 0.00 0.00 40.46 1.40
472 821 7.598493 GCACTTGAGAAGTTGGCAAAATAAATA 59.402 33.333 0.00 0.00 40.46 1.40
473 822 6.424812 GCACTTGAGAAGTTGGCAAAATAAAT 59.575 34.615 0.00 0.00 40.46 1.40
474 823 5.752955 GCACTTGAGAAGTTGGCAAAATAAA 59.247 36.000 0.00 0.00 40.46 1.40
475 824 5.068987 AGCACTTGAGAAGTTGGCAAAATAA 59.931 36.000 0.00 0.00 40.46 1.40
476 825 4.584325 AGCACTTGAGAAGTTGGCAAAATA 59.416 37.500 0.00 0.00 40.46 1.40
477 826 3.385755 AGCACTTGAGAAGTTGGCAAAAT 59.614 39.130 0.00 0.00 40.46 1.82
478 827 2.760092 AGCACTTGAGAAGTTGGCAAAA 59.240 40.909 0.00 0.00 40.46 2.44
534 886 1.523711 GCAGAAATGGATCCGCGGA 60.524 57.895 33.12 33.12 0.00 5.54
573 925 4.110493 CTAGGTAAGCTGCGGCAC 57.890 61.111 21.93 10.08 41.70 5.01
603 959 2.102252 AGTCTGGATCTCAAATCGGAGC 59.898 50.000 0.00 0.00 34.84 4.70
611 989 2.634453 TGCAGTTCAGTCTGGATCTCAA 59.366 45.455 0.00 0.00 36.12 3.02
627 1007 1.898574 CTTTGCTCCCGGTTGCAGT 60.899 57.895 16.29 0.00 40.46 4.40
682 1121 4.577834 AATTAACCTCAAACCAACACCG 57.422 40.909 0.00 0.00 0.00 4.94
684 1123 6.073819 GCATGAAATTAACCTCAAACCAACAC 60.074 38.462 0.00 0.00 0.00 3.32
685 1124 5.988561 GCATGAAATTAACCTCAAACCAACA 59.011 36.000 0.00 0.00 0.00 3.33
690 1137 4.020662 TGGGGCATGAAATTAACCTCAAAC 60.021 41.667 0.00 0.00 0.00 2.93
709 1156 2.042762 TCAGGGTCAGGGATGGGG 59.957 66.667 0.00 0.00 0.00 4.96
736 1183 5.534207 TGGACTGAATTTTGCTCATGTTT 57.466 34.783 0.00 0.00 0.00 2.83
737 1184 5.069516 AGTTGGACTGAATTTTGCTCATGTT 59.930 36.000 0.00 0.00 0.00 2.71
738 1185 4.586001 AGTTGGACTGAATTTTGCTCATGT 59.414 37.500 0.00 0.00 0.00 3.21
739 1186 5.130292 AGTTGGACTGAATTTTGCTCATG 57.870 39.130 0.00 0.00 0.00 3.07
740 1187 5.796424 AAGTTGGACTGAATTTTGCTCAT 57.204 34.783 0.00 0.00 0.00 2.90
741 1188 6.899393 ATAAGTTGGACTGAATTTTGCTCA 57.101 33.333 0.00 0.00 0.00 4.26
742 1189 7.572502 CAATAAGTTGGACTGAATTTTGCTC 57.427 36.000 0.00 0.00 0.00 4.26
783 1853 9.157104 GGACTGAAATTTTACAAAAACTGGAAA 57.843 29.630 0.00 0.00 35.96 3.13
786 1856 8.387354 GTTGGACTGAAATTTTACAAAAACTGG 58.613 33.333 0.00 0.00 0.00 4.00
795 1865 4.988540 GGCCAAGTTGGACTGAAATTTTAC 59.011 41.667 26.52 2.48 44.12 2.01
853 2050 5.758296 CCTTGTTAAACACAGCTCAAGTCTA 59.242 40.000 6.74 0.00 36.48 2.59
855 2052 4.789802 GCCTTGTTAAACACAGCTCAAGTC 60.790 45.833 6.74 0.00 36.48 3.01
870 2067 2.979678 AGGACTCAGGAAAGCCTTGTTA 59.020 45.455 0.00 0.00 43.90 2.41
871 2068 1.777272 AGGACTCAGGAAAGCCTTGTT 59.223 47.619 0.00 0.00 43.90 2.83
873 2070 1.349026 TCAGGACTCAGGAAAGCCTTG 59.651 52.381 0.00 0.00 43.90 3.61
874 2071 1.349357 GTCAGGACTCAGGAAAGCCTT 59.651 52.381 0.00 0.00 43.90 4.35
876 2073 0.035915 GGTCAGGACTCAGGAAAGCC 60.036 60.000 0.00 0.00 0.00 4.35
877 2074 0.687354 TGGTCAGGACTCAGGAAAGC 59.313 55.000 0.00 0.00 0.00 3.51
878 2075 1.974236 AGTGGTCAGGACTCAGGAAAG 59.026 52.381 0.00 0.00 0.00 2.62
879 2076 2.103153 AGTGGTCAGGACTCAGGAAA 57.897 50.000 0.00 0.00 0.00 3.13
880 2077 2.103153 AAGTGGTCAGGACTCAGGAA 57.897 50.000 0.00 0.00 0.00 3.36
881 2078 2.103153 AAAGTGGTCAGGACTCAGGA 57.897 50.000 0.00 0.00 0.00 3.86
883 2080 3.658709 GAGAAAAGTGGTCAGGACTCAG 58.341 50.000 0.00 0.00 0.00 3.35
884 2081 2.035961 CGAGAAAAGTGGTCAGGACTCA 59.964 50.000 0.00 0.00 0.00 3.41
885 2082 2.678324 CGAGAAAAGTGGTCAGGACTC 58.322 52.381 0.00 0.00 0.00 3.36
886 2083 1.270358 GCGAGAAAAGTGGTCAGGACT 60.270 52.381 0.00 0.00 0.00 3.85
887 2084 1.149148 GCGAGAAAAGTGGTCAGGAC 58.851 55.000 0.00 0.00 0.00 3.85
888 2085 1.048601 AGCGAGAAAAGTGGTCAGGA 58.951 50.000 0.00 0.00 0.00 3.86
894 2091 1.065401 TGTTGCAAGCGAGAAAAGTGG 59.935 47.619 0.00 0.00 0.00 4.00
897 2094 3.004024 ACATGTTGCAAGCGAGAAAAG 57.996 42.857 0.00 0.00 0.00 2.27
905 2102 1.724623 CTGCATGAACATGTTGCAAGC 59.275 47.619 20.84 20.95 44.99 4.01
913 2110 3.558829 ACGCTCTATTCTGCATGAACATG 59.441 43.478 10.04 10.04 41.60 3.21
935 2132 3.899981 ATTCAGCAAGGCGGCGACA 62.900 57.895 18.30 0.00 39.27 4.35
937 2134 3.126879 CATTCAGCAAGGCGGCGA 61.127 61.111 12.98 0.00 39.27 5.54
938 2135 2.855728 GAACATTCAGCAAGGCGGCG 62.856 60.000 0.51 0.51 39.27 6.46
939 2136 1.153958 GAACATTCAGCAAGGCGGC 60.154 57.895 0.00 0.00 0.00 6.53
940 2137 0.962356 AGGAACATTCAGCAAGGCGG 60.962 55.000 0.00 0.00 0.00 6.13
942 2139 1.068055 CACAGGAACATTCAGCAAGGC 60.068 52.381 0.00 0.00 0.00 4.35
943 2140 2.486982 CTCACAGGAACATTCAGCAAGG 59.513 50.000 0.00 0.00 0.00 3.61
960 2159 0.312102 GGCAGCCTTGTCAAACTCAC 59.688 55.000 3.29 0.00 0.00 3.51
961 2160 0.106769 TGGCAGCCTTGTCAAACTCA 60.107 50.000 14.15 0.00 35.62 3.41
995 2194 1.331756 GGCAACACCAGCTCATTATCG 59.668 52.381 0.00 0.00 38.86 2.92
1044 2258 6.778069 CCTGTTGTCTATGGGAGTAGAGATTA 59.222 42.308 0.00 0.00 31.66 1.75
1073 2287 0.255890 GCTGCTATGGGGGTGAAGAA 59.744 55.000 0.00 0.00 0.00 2.52
1078 2292 1.680338 GTTAAGCTGCTATGGGGGTG 58.320 55.000 0.90 0.00 0.00 4.61
1081 2295 0.535102 CCGGTTAAGCTGCTATGGGG 60.535 60.000 0.90 0.00 0.00 4.96
1086 2300 2.167075 GGTCTTACCGGTTAAGCTGCTA 59.833 50.000 15.04 0.00 37.67 3.49
1093 2307 5.721000 TCCAAATAGAGGTCTTACCGGTTAA 59.279 40.000 15.04 4.24 44.90 2.01
1097 2311 4.957684 ATCCAAATAGAGGTCTTACCGG 57.042 45.455 0.00 0.00 44.90 5.28
1105 2319 8.815912 AGTAAATTTTGCAATCCAAATAGAGGT 58.184 29.630 0.00 0.00 42.63 3.85
1107 2321 8.598075 GCAGTAAATTTTGCAATCCAAATAGAG 58.402 33.333 9.48 0.00 42.63 2.43
1131 2345 4.275689 CACCAAATCTGTAAACTCTGTGCA 59.724 41.667 0.00 0.00 0.00 4.57
1138 2352 8.691661 AAGTCATAACACCAAATCTGTAAACT 57.308 30.769 0.00 0.00 0.00 2.66
1139 2353 9.180678 CAAAGTCATAACACCAAATCTGTAAAC 57.819 33.333 0.00 0.00 0.00 2.01
1141 2355 8.349245 CACAAAGTCATAACACCAAATCTGTAA 58.651 33.333 0.00 0.00 0.00 2.41
1142 2356 7.717436 TCACAAAGTCATAACACCAAATCTGTA 59.283 33.333 0.00 0.00 0.00 2.74
1144 2358 6.969366 TCACAAAGTCATAACACCAAATCTG 58.031 36.000 0.00 0.00 0.00 2.90
1145 2359 7.596494 CATCACAAAGTCATAACACCAAATCT 58.404 34.615 0.00 0.00 0.00 2.40
1146 2360 6.308766 GCATCACAAAGTCATAACACCAAATC 59.691 38.462 0.00 0.00 0.00 2.17
1147 2361 6.158598 GCATCACAAAGTCATAACACCAAAT 58.841 36.000 0.00 0.00 0.00 2.32
1152 2366 5.376854 AAGGCATCACAAAGTCATAACAC 57.623 39.130 0.00 0.00 0.00 3.32
1177 2391 6.998802 ACTGATGGAAGAATACTATACTGCC 58.001 40.000 0.00 0.00 0.00 4.85
1184 2398 9.010029 GGAACAAAAACTGATGGAAGAATACTA 57.990 33.333 0.00 0.00 0.00 1.82
1193 2407 3.383185 GTGTGGGAACAAAAACTGATGGA 59.617 43.478 0.00 0.00 46.06 3.41
1280 2548 7.553881 AGGATGTTTCGTTATTTATGTCCAG 57.446 36.000 0.00 0.00 0.00 3.86
1290 2558 7.696992 ACATTTGGTAAGGATGTTTCGTTAT 57.303 32.000 0.00 0.00 35.38 1.89
1308 2588 4.044336 TGAAAGCAGTGACCAACATTTG 57.956 40.909 0.00 0.00 0.00 2.32
1311 2591 2.233271 CCTGAAAGCAGTGACCAACAT 58.767 47.619 0.00 0.00 40.63 2.71
1312 2592 1.679139 CCTGAAAGCAGTGACCAACA 58.321 50.000 0.00 0.00 40.63 3.33
1313 2593 0.312102 GCCTGAAAGCAGTGACCAAC 59.688 55.000 0.00 0.00 40.63 3.77
1315 2595 1.531259 TGCCTGAAAGCAGTGACCA 59.469 52.632 0.00 0.00 40.63 4.02
1316 2596 4.481195 TGCCTGAAAGCAGTGACC 57.519 55.556 0.00 0.00 40.63 4.02
1574 2855 1.606737 GCAGAGAGAACTTTGACCGCT 60.607 52.381 0.00 0.00 31.03 5.52
1604 2885 6.070656 TGTCAAAAATTCTCTGATTCCCTGT 58.929 36.000 0.00 0.00 0.00 4.00
1610 2891 8.786898 TCGATTTCTGTCAAAAATTCTCTGATT 58.213 29.630 0.00 0.00 0.00 2.57
1622 2903 5.163992 GCTGATAACGTCGATTTCTGTCAAA 60.164 40.000 0.00 0.00 0.00 2.69
1696 2977 1.336755 ACACCAAAATGCGGTTGTCTC 59.663 47.619 0.00 0.00 33.25 3.36
1788 3077 3.904234 GTCGCAACGAAAATAACCTTGTC 59.096 43.478 0.00 0.00 37.72 3.18
1792 3081 4.823790 AAAGTCGCAACGAAAATAACCT 57.176 36.364 0.00 0.00 37.72 3.50
1796 3085 8.563289 AAATGTTAAAAGTCGCAACGAAAATA 57.437 26.923 0.00 0.00 37.72 1.40
1803 3092 7.221259 ACAAGGTAAAATGTTAAAAGTCGCAAC 59.779 33.333 0.00 0.00 0.00 4.17
1833 3122 2.512515 GCTGTTAGAGCCTGCGGG 60.513 66.667 7.41 7.41 42.54 6.13
1916 3205 2.435805 TGGGATCTCTTCATGCAGGTAC 59.564 50.000 0.00 0.00 0.00 3.34
1955 3244 7.786030 TGAGTATATTGCTAGCCTTGATATCC 58.214 38.462 13.29 2.73 0.00 2.59
1988 3277 2.914059 CCGATCTTGGGGACGTAATTT 58.086 47.619 0.00 0.00 0.00 1.82
2100 3389 9.841295 AACTACTGTACTTTCCAGTTAAATGAA 57.159 29.630 4.10 0.00 42.83 2.57
2163 3452 8.894592 ACTAGACAATGGGATATATGAAACCAT 58.105 33.333 0.00 0.00 43.39 3.55
2173 3462 4.910304 AGGAGCAACTAGACAATGGGATAT 59.090 41.667 0.00 0.00 0.00 1.63
2188 3477 3.944087 AGGTAACATGAGAAGGAGCAAC 58.056 45.455 0.00 0.00 41.41 4.17
2201 3497 8.947115 GTAAGCAGAGTTAATTCAAGGTAACAT 58.053 33.333 0.44 0.00 41.41 2.71
2279 3575 9.352784 GCTGTATATATCTGCTTTCTTAGTCAG 57.647 37.037 0.00 0.00 32.59 3.51
2420 3716 4.040829 TGGAATACAGATAGGCAGGTGATG 59.959 45.833 0.00 0.00 0.00 3.07
2423 3719 3.733337 GTGGAATACAGATAGGCAGGTG 58.267 50.000 0.00 0.00 0.00 4.00
2424 3720 2.365617 CGTGGAATACAGATAGGCAGGT 59.634 50.000 0.00 0.00 0.00 4.00
2425 3721 2.628178 TCGTGGAATACAGATAGGCAGG 59.372 50.000 0.00 0.00 0.00 4.85
2426 3722 4.051922 GTTCGTGGAATACAGATAGGCAG 58.948 47.826 0.00 0.00 0.00 4.85
2427 3723 3.490249 CGTTCGTGGAATACAGATAGGCA 60.490 47.826 0.00 0.00 0.00 4.75
2428 3724 3.050619 CGTTCGTGGAATACAGATAGGC 58.949 50.000 0.00 0.00 0.00 3.93
2429 3725 4.563337 TCGTTCGTGGAATACAGATAGG 57.437 45.455 0.00 0.00 0.00 2.57
2437 3733 6.369340 ACAAACATGTATTCGTTCGTGGAATA 59.631 34.615 0.00 2.86 35.78 1.75
2438 3734 5.180492 ACAAACATGTATTCGTTCGTGGAAT 59.820 36.000 0.00 4.38 37.79 3.01
2439 3735 4.512198 ACAAACATGTATTCGTTCGTGGAA 59.488 37.500 0.00 0.00 0.00 3.53
2440 3736 4.059511 ACAAACATGTATTCGTTCGTGGA 58.940 39.130 0.00 0.00 0.00 4.02
2441 3737 4.084276 TCACAAACATGTATTCGTTCGTGG 60.084 41.667 0.00 0.00 32.23 4.94
2442 3738 5.012655 TCACAAACATGTATTCGTTCGTG 57.987 39.130 0.00 1.79 32.53 4.35
2443 3739 5.856126 ATCACAAACATGTATTCGTTCGT 57.144 34.783 0.00 0.00 0.00 3.85
2444 3740 6.757162 TGTATCACAAACATGTATTCGTTCG 58.243 36.000 0.00 0.00 0.00 3.95
2445 3741 7.739295 ACTGTATCACAAACATGTATTCGTTC 58.261 34.615 0.00 0.00 0.00 3.95
2446 3742 7.667043 ACTGTATCACAAACATGTATTCGTT 57.333 32.000 0.00 0.00 0.00 3.85
2447 3743 7.667043 AACTGTATCACAAACATGTATTCGT 57.333 32.000 0.00 0.00 0.00 3.85
2448 3744 8.227119 TGAAACTGTATCACAAACATGTATTCG 58.773 33.333 0.00 0.00 0.00 3.34
2449 3745 9.546909 CTGAAACTGTATCACAAACATGTATTC 57.453 33.333 0.00 0.00 0.00 1.75
2450 3746 9.283768 TCTGAAACTGTATCACAAACATGTATT 57.716 29.630 0.00 0.00 0.00 1.89
2451 3747 8.846943 TCTGAAACTGTATCACAAACATGTAT 57.153 30.769 0.00 0.00 0.00 2.29
2452 3748 8.669946 TTCTGAAACTGTATCACAAACATGTA 57.330 30.769 0.00 0.00 0.00 2.29
2453 3749 7.566760 TTCTGAAACTGTATCACAAACATGT 57.433 32.000 0.00 0.00 0.00 3.21
2454 3750 9.121517 GATTTCTGAAACTGTATCACAAACATG 57.878 33.333 4.73 0.00 0.00 3.21
2455 3751 8.849168 TGATTTCTGAAACTGTATCACAAACAT 58.151 29.630 4.73 0.00 0.00 2.71
2456 3752 8.219546 TGATTTCTGAAACTGTATCACAAACA 57.780 30.769 4.73 0.00 0.00 2.83
2457 3753 8.559536 TCTGATTTCTGAAACTGTATCACAAAC 58.440 33.333 4.73 0.00 0.00 2.93
2458 3754 8.675705 TCTGATTTCTGAAACTGTATCACAAA 57.324 30.769 4.73 0.00 0.00 2.83
2459 3755 8.559536 GTTCTGATTTCTGAAACTGTATCACAA 58.440 33.333 4.73 0.00 35.96 3.33
2460 3756 7.714813 TGTTCTGATTTCTGAAACTGTATCACA 59.285 33.333 4.73 1.00 35.96 3.58
2461 3757 8.087982 TGTTCTGATTTCTGAAACTGTATCAC 57.912 34.615 4.73 0.00 35.96 3.06
2462 3758 8.559536 GTTGTTCTGATTTCTGAAACTGTATCA 58.440 33.333 4.73 4.31 35.96 2.15
2463 3759 7.742089 CGTTGTTCTGATTTCTGAAACTGTATC 59.258 37.037 4.73 0.00 35.96 2.24
2464 3760 7.576236 CGTTGTTCTGATTTCTGAAACTGTAT 58.424 34.615 4.73 0.00 35.96 2.29
2465 3761 6.511121 GCGTTGTTCTGATTTCTGAAACTGTA 60.511 38.462 4.73 0.00 35.96 2.74
2466 3762 5.730568 GCGTTGTTCTGATTTCTGAAACTGT 60.731 40.000 4.73 0.00 35.96 3.55
2467 3763 4.672413 GCGTTGTTCTGATTTCTGAAACTG 59.328 41.667 4.73 4.57 35.96 3.16
2468 3764 4.335315 TGCGTTGTTCTGATTTCTGAAACT 59.665 37.500 4.73 0.00 35.96 2.66
2469 3765 4.597079 TGCGTTGTTCTGATTTCTGAAAC 58.403 39.130 4.73 0.91 35.96 2.78
2470 3766 4.335315 ACTGCGTTGTTCTGATTTCTGAAA 59.665 37.500 5.15 5.15 35.96 2.69
2471 3767 3.876914 ACTGCGTTGTTCTGATTTCTGAA 59.123 39.130 0.00 0.00 0.00 3.02
2472 3768 3.466836 ACTGCGTTGTTCTGATTTCTGA 58.533 40.909 0.00 0.00 0.00 3.27
2473 3769 3.885484 ACTGCGTTGTTCTGATTTCTG 57.115 42.857 0.00 0.00 0.00 3.02
2474 3770 5.527582 ACTTAACTGCGTTGTTCTGATTTCT 59.472 36.000 4.52 0.00 0.00 2.52
2475 3771 5.748592 ACTTAACTGCGTTGTTCTGATTTC 58.251 37.500 4.52 0.00 0.00 2.17
2476 3772 5.751243 ACTTAACTGCGTTGTTCTGATTT 57.249 34.783 4.52 0.00 0.00 2.17
2477 3773 5.751243 AACTTAACTGCGTTGTTCTGATT 57.249 34.783 4.52 0.00 0.00 2.57
2478 3774 6.854496 TTAACTTAACTGCGTTGTTCTGAT 57.146 33.333 4.52 0.00 0.00 2.90
2479 3775 6.665474 TTTAACTTAACTGCGTTGTTCTGA 57.335 33.333 4.52 0.00 0.00 3.27
2480 3776 7.184106 TCTTTTAACTTAACTGCGTTGTTCTG 58.816 34.615 4.52 0.00 0.00 3.02
2481 3777 7.311364 TCTTTTAACTTAACTGCGTTGTTCT 57.689 32.000 4.52 0.00 0.00 3.01
2482 3778 7.958112 TTCTTTTAACTTAACTGCGTTGTTC 57.042 32.000 4.52 0.00 0.00 3.18
2483 3779 8.745464 TTTTCTTTTAACTTAACTGCGTTGTT 57.255 26.923 4.52 4.15 0.00 2.83
2484 3780 8.745464 TTTTTCTTTTAACTTAACTGCGTTGT 57.255 26.923 4.52 0.00 0.00 3.32
2510 3806 7.801716 TTACAGTACATGTCTTCAGCTTTTT 57.198 32.000 0.00 0.00 42.70 1.94
2511 3807 7.986085 ATTACAGTACATGTCTTCAGCTTTT 57.014 32.000 0.00 0.00 42.70 2.27
2512 3808 7.661437 TGAATTACAGTACATGTCTTCAGCTTT 59.339 33.333 0.00 0.00 42.70 3.51
2513 3809 7.161404 TGAATTACAGTACATGTCTTCAGCTT 58.839 34.615 0.00 0.00 42.70 3.74
2514 3810 6.701340 TGAATTACAGTACATGTCTTCAGCT 58.299 36.000 0.00 0.00 42.70 4.24
2515 3811 6.968131 TGAATTACAGTACATGTCTTCAGC 57.032 37.500 0.00 0.00 42.70 4.26
2530 3826 9.547753 GATAAGAAGGTGATAAGCTGAATTACA 57.452 33.333 0.00 0.00 0.00 2.41
2531 3827 9.771534 AGATAAGAAGGTGATAAGCTGAATTAC 57.228 33.333 0.00 0.00 0.00 1.89
2532 3828 9.770097 CAGATAAGAAGGTGATAAGCTGAATTA 57.230 33.333 0.00 0.00 0.00 1.40
2533 3829 7.228308 GCAGATAAGAAGGTGATAAGCTGAATT 59.772 37.037 0.00 0.00 0.00 2.17
2534 3830 6.709846 GCAGATAAGAAGGTGATAAGCTGAAT 59.290 38.462 0.00 0.00 0.00 2.57
2535 3831 6.051717 GCAGATAAGAAGGTGATAAGCTGAA 58.948 40.000 0.00 0.00 0.00 3.02
2536 3832 5.129320 TGCAGATAAGAAGGTGATAAGCTGA 59.871 40.000 0.00 0.00 0.00 4.26
2537 3833 5.363101 TGCAGATAAGAAGGTGATAAGCTG 58.637 41.667 0.00 0.00 0.00 4.24
2538 3834 5.620738 TGCAGATAAGAAGGTGATAAGCT 57.379 39.130 0.00 0.00 0.00 3.74
2539 3835 6.072783 GGAATGCAGATAAGAAGGTGATAAGC 60.073 42.308 0.00 0.00 0.00 3.09
2540 3836 6.994496 TGGAATGCAGATAAGAAGGTGATAAG 59.006 38.462 0.00 0.00 0.00 1.73
2541 3837 6.767902 GTGGAATGCAGATAAGAAGGTGATAA 59.232 38.462 0.00 0.00 0.00 1.75
2542 3838 6.126796 TGTGGAATGCAGATAAGAAGGTGATA 60.127 38.462 0.00 0.00 0.00 2.15
2543 3839 5.128919 GTGGAATGCAGATAAGAAGGTGAT 58.871 41.667 0.00 0.00 0.00 3.06
2544 3840 4.019411 TGTGGAATGCAGATAAGAAGGTGA 60.019 41.667 0.00 0.00 0.00 4.02
2545 3841 4.264253 TGTGGAATGCAGATAAGAAGGTG 58.736 43.478 0.00 0.00 0.00 4.00
2550 3846 6.885918 TCTTCATTTGTGGAATGCAGATAAGA 59.114 34.615 0.00 0.00 41.19 2.10
2589 3888 9.677567 GTTGTTGTTCTGATATTTTAAAGCTGA 57.322 29.630 0.00 0.00 0.00 4.26
2724 4027 4.974645 TGTCAATGTTCAGGGTTAGACT 57.025 40.909 0.00 0.00 0.00 3.24
2776 4121 2.087646 GGATCAACCAGTTCCTTGAGC 58.912 52.381 0.00 0.00 38.79 4.26
2947 4292 2.586079 CTGATGTACCCTGGCGCG 60.586 66.667 0.00 0.00 0.00 6.86
2953 4298 5.069251 GCTATTGTACTCACTGATGTACCCT 59.931 44.000 12.47 6.19 38.48 4.34
3083 4428 2.025887 CCTTGTTTCACCTAGGGCTGAT 60.026 50.000 14.81 0.00 0.00 2.90
3129 4475 4.943705 ACCCTACACAATAATGCAAGTGAG 59.056 41.667 11.72 0.00 35.97 3.51
3132 4478 4.700213 GTCACCCTACACAATAATGCAAGT 59.300 41.667 0.00 0.00 0.00 3.16
3133 4479 4.699735 TGTCACCCTACACAATAATGCAAG 59.300 41.667 0.00 0.00 0.00 4.01
3136 4482 4.261801 ACTGTCACCCTACACAATAATGC 58.738 43.478 0.00 0.00 0.00 3.56
3138 4484 5.486063 TGGTACTGTCACCCTACACAATAAT 59.514 40.000 0.00 0.00 37.84 1.28
3140 4486 4.418359 TGGTACTGTCACCCTACACAATA 58.582 43.478 0.00 0.00 37.84 1.90
3144 4491 4.275810 TCTATGGTACTGTCACCCTACAC 58.724 47.826 0.00 0.00 37.84 2.90
3153 4502 1.069358 GCTGCCCTCTATGGTACTGTC 59.931 57.143 0.00 0.00 0.00 3.51
3174 4523 5.755375 GCACAGTGCACATATCTAAGTATGT 59.245 40.000 21.22 6.88 44.26 2.29
3175 4524 6.220579 GCACAGTGCACATATCTAAGTATG 57.779 41.667 21.22 6.19 44.26 2.39
3190 4539 3.054503 CAGGAGCAGGCACAGTGC 61.055 66.667 17.97 17.97 44.08 4.40
3193 4542 1.375652 CACTCAGGAGCAGGCACAG 60.376 63.158 0.00 0.00 0.00 3.66
3198 4547 1.233019 CAAACACACTCAGGAGCAGG 58.767 55.000 0.00 0.00 0.00 4.85
3205 4554 3.365832 GCATTGACACAAACACACTCAG 58.634 45.455 0.00 0.00 0.00 3.35
3211 4560 0.248825 TGCCGCATTGACACAAACAC 60.249 50.000 0.00 0.00 0.00 3.32
3213 4562 1.130955 CTTGCCGCATTGACACAAAC 58.869 50.000 0.00 0.00 0.00 2.93
3214 4563 0.743688 ACTTGCCGCATTGACACAAA 59.256 45.000 0.00 0.00 0.00 2.83
3216 4565 1.155889 CTACTTGCCGCATTGACACA 58.844 50.000 0.00 0.00 0.00 3.72
3217 4566 1.438651 TCTACTTGCCGCATTGACAC 58.561 50.000 0.00 0.00 0.00 3.67
3221 4570 1.089920 AGCTTCTACTTGCCGCATTG 58.910 50.000 0.00 0.00 0.00 2.82
3247 4597 5.221803 CCCTGGCATGAATCACTAGTCTATT 60.222 44.000 0.00 0.00 0.00 1.73
3253 4608 1.602311 GCCCTGGCATGAATCACTAG 58.398 55.000 2.58 0.00 41.49 2.57
3288 4643 3.551454 CCACTTCATGCTGTCCAAACAAG 60.551 47.826 0.00 0.00 34.24 3.16
3289 4644 2.361757 CCACTTCATGCTGTCCAAACAA 59.638 45.455 0.00 0.00 34.24 2.83
3290 4645 1.955778 CCACTTCATGCTGTCCAAACA 59.044 47.619 0.00 0.00 0.00 2.83
3293 4648 1.421268 ACTCCACTTCATGCTGTCCAA 59.579 47.619 0.00 0.00 0.00 3.53
3296 4651 3.601443 ACTACTCCACTTCATGCTGTC 57.399 47.619 0.00 0.00 0.00 3.51
3297 4652 3.324846 TCAACTACTCCACTTCATGCTGT 59.675 43.478 0.00 0.00 0.00 4.40
3298 4653 3.930336 TCAACTACTCCACTTCATGCTG 58.070 45.455 0.00 0.00 0.00 4.41
3299 4654 4.623932 TTCAACTACTCCACTTCATGCT 57.376 40.909 0.00 0.00 0.00 3.79
3300 4655 5.007136 GCTATTCAACTACTCCACTTCATGC 59.993 44.000 0.00 0.00 0.00 4.06
3301 4656 6.108687 TGCTATTCAACTACTCCACTTCATG 58.891 40.000 0.00 0.00 0.00 3.07
3302 4657 6.299805 TGCTATTCAACTACTCCACTTCAT 57.700 37.500 0.00 0.00 0.00 2.57
3303 4658 5.738619 TGCTATTCAACTACTCCACTTCA 57.261 39.130 0.00 0.00 0.00 3.02
3304 4659 7.467623 CAAATGCTATTCAACTACTCCACTTC 58.532 38.462 0.00 0.00 0.00 3.01
3305 4660 6.127897 GCAAATGCTATTCAACTACTCCACTT 60.128 38.462 0.00 0.00 38.21 3.16
3306 4661 5.355350 GCAAATGCTATTCAACTACTCCACT 59.645 40.000 0.00 0.00 38.21 4.00
3307 4662 5.123820 TGCAAATGCTATTCAACTACTCCAC 59.876 40.000 6.97 0.00 42.66 4.02
3308 4663 5.252547 TGCAAATGCTATTCAACTACTCCA 58.747 37.500 6.97 0.00 42.66 3.86
3309 4664 5.586243 TCTGCAAATGCTATTCAACTACTCC 59.414 40.000 6.97 0.00 42.66 3.85
3310 4665 6.314896 ACTCTGCAAATGCTATTCAACTACTC 59.685 38.462 6.97 0.00 42.66 2.59
3311 4666 6.176183 ACTCTGCAAATGCTATTCAACTACT 58.824 36.000 6.97 0.00 42.66 2.57
3312 4667 6.092670 TGACTCTGCAAATGCTATTCAACTAC 59.907 38.462 6.97 0.00 42.66 2.73
3313 4668 6.172630 TGACTCTGCAAATGCTATTCAACTA 58.827 36.000 6.97 0.00 42.66 2.24
3314 4669 5.005740 TGACTCTGCAAATGCTATTCAACT 58.994 37.500 6.97 0.00 42.66 3.16
3315 4670 5.300969 TGACTCTGCAAATGCTATTCAAC 57.699 39.130 6.97 0.00 42.66 3.18
3316 4671 5.648960 TGATGACTCTGCAAATGCTATTCAA 59.351 36.000 6.97 0.00 42.66 2.69
3317 4672 5.187687 TGATGACTCTGCAAATGCTATTCA 58.812 37.500 6.97 5.60 42.66 2.57
3318 4673 5.746307 TGATGACTCTGCAAATGCTATTC 57.254 39.130 6.97 0.34 42.66 1.75
3319 4674 6.320418 TGATTGATGACTCTGCAAATGCTATT 59.680 34.615 6.97 0.00 42.66 1.73
3320 4675 5.826208 TGATTGATGACTCTGCAAATGCTAT 59.174 36.000 6.97 0.00 42.66 2.97
3321 4676 5.187687 TGATTGATGACTCTGCAAATGCTA 58.812 37.500 6.97 0.00 42.66 3.49
3322 4677 4.014406 TGATTGATGACTCTGCAAATGCT 58.986 39.130 6.97 0.00 42.66 3.79
3323 4678 4.352039 CTGATTGATGACTCTGCAAATGC 58.648 43.478 0.00 0.00 42.50 3.56
3324 4679 4.733815 GCCTGATTGATGACTCTGCAAATG 60.734 45.833 0.00 0.00 0.00 2.32
3325 4680 3.380637 GCCTGATTGATGACTCTGCAAAT 59.619 43.478 0.00 0.00 0.00 2.32
3326 4681 2.751259 GCCTGATTGATGACTCTGCAAA 59.249 45.455 0.00 0.00 0.00 3.68
3327 4682 2.290450 TGCCTGATTGATGACTCTGCAA 60.290 45.455 0.00 0.00 0.00 4.08
3328 4683 1.279846 TGCCTGATTGATGACTCTGCA 59.720 47.619 0.00 0.00 0.00 4.41
3329 4684 2.034104 TGCCTGATTGATGACTCTGC 57.966 50.000 0.00 0.00 0.00 4.26
3330 4685 3.542648 ACATGCCTGATTGATGACTCTG 58.457 45.455 0.00 0.00 0.00 3.35
3331 4686 3.199289 TGACATGCCTGATTGATGACTCT 59.801 43.478 0.00 0.00 0.00 3.24
3332 4687 3.538591 TGACATGCCTGATTGATGACTC 58.461 45.455 0.00 0.00 0.00 3.36
3333 4688 3.639672 TGACATGCCTGATTGATGACT 57.360 42.857 0.00 0.00 0.00 3.41
3334 4689 3.059120 CGATGACATGCCTGATTGATGAC 60.059 47.826 0.00 0.00 0.00 3.06
3335 4690 3.135994 CGATGACATGCCTGATTGATGA 58.864 45.455 0.00 0.00 0.00 2.92
3336 4691 2.350484 GCGATGACATGCCTGATTGATG 60.350 50.000 0.00 0.00 0.00 3.07
3337 4692 1.878088 GCGATGACATGCCTGATTGAT 59.122 47.619 0.00 0.00 0.00 2.57
3338 4693 1.302366 GCGATGACATGCCTGATTGA 58.698 50.000 0.00 0.00 0.00 2.57
3339 4694 1.018910 TGCGATGACATGCCTGATTG 58.981 50.000 0.00 0.00 0.00 2.67
3356 4711 5.619625 AAGCTGAGAAGTTAACTGAATGC 57.380 39.130 9.34 10.25 0.00 3.56
3506 4861 5.560722 TCTTTTTGTAGAGATCCACACCA 57.439 39.130 0.00 0.00 0.00 4.17
3507 4862 5.292101 CGATCTTTTTGTAGAGATCCACACC 59.708 44.000 7.54 0.00 43.34 4.16
3508 4863 5.220491 GCGATCTTTTTGTAGAGATCCACAC 60.220 44.000 7.54 0.00 43.34 3.82
3511 4866 5.344743 AGCGATCTTTTTGTAGAGATCCA 57.655 39.130 7.54 0.00 43.34 3.41
3552 4908 9.137459 TGAAACTTCTTATGTTTTCAATACCCA 57.863 29.630 0.00 0.00 37.70 4.51
3568 4924 7.671302 TGACTATGCTTAGACTGAAACTTCTT 58.329 34.615 13.22 0.00 0.00 2.52
3836 5199 3.148279 GACCTCTCCCGGATGCGT 61.148 66.667 0.73 0.00 0.00 5.24
3875 5238 0.107508 CCATCGCAGTCATTCAGGGT 60.108 55.000 0.00 0.00 0.00 4.34
3956 5319 3.706594 ACTGGAAATCAATCTCGGAGCTA 59.293 43.478 0.00 0.00 0.00 3.32
4019 5382 2.948979 TGGTGTTCTGCAGATTTTCGTT 59.051 40.909 19.04 0.00 0.00 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.