Multiple sequence alignment - TraesCS2D01G564200
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS2D01G564200 | chr2D | 100.000 | 3396 | 0 | 0 | 966 | 4361 | 634873651 | 634877046 | 0.000000e+00 | 6272.0 |
1 | TraesCS2D01G564200 | chr2D | 100.000 | 534 | 0 | 0 | 1 | 534 | 634872686 | 634873219 | 0.000000e+00 | 987.0 |
2 | TraesCS2D01G564200 | chr2A | 91.864 | 2704 | 165 | 28 | 966 | 3647 | 778428054 | 778425384 | 0.000000e+00 | 3723.0 |
3 | TraesCS2D01G564200 | chr2A | 89.698 | 563 | 32 | 11 | 3700 | 4259 | 778425368 | 778424829 | 0.000000e+00 | 695.0 |
4 | TraesCS2D01G564200 | chr2A | 94.355 | 124 | 3 | 4 | 408 | 528 | 778428207 | 778428085 | 2.070000e-43 | 187.0 |
5 | TraesCS2D01G564200 | chr2A | 91.765 | 85 | 5 | 1 | 4264 | 4346 | 778424786 | 778424702 | 2.760000e-22 | 117.0 |
6 | TraesCS2D01G564200 | chr2A | 84.615 | 91 | 14 | 0 | 3107 | 3197 | 24313701 | 24313791 | 1.670000e-14 | 91.6 |
7 | TraesCS2D01G564200 | chr2B | 91.923 | 1981 | 106 | 21 | 1691 | 3647 | 778850650 | 778848700 | 0.000000e+00 | 2723.0 |
8 | TraesCS2D01G564200 | chr2B | 88.275 | 742 | 41 | 10 | 966 | 1683 | 778851344 | 778850625 | 0.000000e+00 | 846.0 |
9 | TraesCS2D01G564200 | chr2B | 92.986 | 442 | 21 | 7 | 3830 | 4262 | 778848575 | 778848135 | 1.710000e-178 | 636.0 |
10 | TraesCS2D01G564200 | chr2B | 78.044 | 542 | 66 | 34 | 3 | 528 | 778851874 | 778851370 | 4.270000e-75 | 292.0 |
11 | TraesCS2D01G564200 | chr2B | 88.235 | 85 | 8 | 1 | 4264 | 4346 | 778848096 | 778848012 | 2.780000e-17 | 100.0 |
12 | TraesCS2D01G564200 | chr2B | 81.443 | 97 | 8 | 9 | 3700 | 3788 | 778848684 | 778848590 | 2.180000e-08 | 71.3 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS2D01G564200 | chr2D | 634872686 | 634877046 | 4360 | False | 3629.50 | 6272 | 100.000000 | 1 | 4361 | 2 | chr2D.!!$F1 | 4360 |
1 | TraesCS2D01G564200 | chr2A | 778424702 | 778428207 | 3505 | True | 1180.50 | 3723 | 91.920500 | 408 | 4346 | 4 | chr2A.!!$R1 | 3938 |
2 | TraesCS2D01G564200 | chr2B | 778848012 | 778851874 | 3862 | True | 778.05 | 2723 | 86.817667 | 3 | 4346 | 6 | chr2B.!!$R1 | 4343 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
158 | 167 | 0.037303 | ATGGAGCTGTGAGGTGTTGG | 59.963 | 55.0 | 0.0 | 0.0 | 0.00 | 3.77 | F |
514 | 533 | 0.179045 | AAGTCACAGCACCAGTCCAC | 60.179 | 55.0 | 0.0 | 0.0 | 0.00 | 4.02 | F |
1648 | 1703 | 0.608130 | TCTCCCAAGTGTCATCGTGG | 59.392 | 55.0 | 0.0 | 0.0 | 36.87 | 4.94 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1632 | 1684 | 1.548719 | TCTACCACGATGACACTTGGG | 59.451 | 52.381 | 0.0 | 0.0 | 34.19 | 4.12 | R |
1810 | 1884 | 2.795231 | ATGACAGCCATGTAAGCACT | 57.205 | 45.000 | 0.0 | 0.0 | 40.68 | 4.40 | R |
3434 | 3535 | 0.251209 | TACAGGACAGGCGACACTCT | 60.251 | 55.000 | 0.0 | 0.0 | 0.00 | 3.24 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
28 | 30 | 9.154847 | CGATTTGTAATCTCATGGATAAGCATA | 57.845 | 33.333 | 0.00 | 0.00 | 33.71 | 3.14 |
30 | 32 | 7.889589 | TTGTAATCTCATGGATAAGCATACG | 57.110 | 36.000 | 0.00 | 0.00 | 33.71 | 3.06 |
34 | 36 | 7.468141 | AATCTCATGGATAAGCATACGACTA | 57.532 | 36.000 | 0.00 | 0.00 | 33.71 | 2.59 |
57 | 59 | 3.005684 | GGCAACACTTGAATCATGTGGAA | 59.994 | 43.478 | 26.03 | 0.00 | 41.69 | 3.53 |
61 | 63 | 4.978099 | ACACTTGAATCATGTGGAAGACT | 58.022 | 39.130 | 26.03 | 7.77 | 41.69 | 3.24 |
62 | 64 | 6.114187 | ACACTTGAATCATGTGGAAGACTA | 57.886 | 37.500 | 26.03 | 0.00 | 41.69 | 2.59 |
63 | 65 | 5.934625 | ACACTTGAATCATGTGGAAGACTAC | 59.065 | 40.000 | 26.03 | 0.00 | 41.69 | 2.73 |
64 | 66 | 6.169094 | CACTTGAATCATGTGGAAGACTACT | 58.831 | 40.000 | 18.17 | 0.00 | 36.36 | 2.57 |
67 | 69 | 6.850752 | TGAATCATGTGGAAGACTACTACA | 57.149 | 37.500 | 0.00 | 0.00 | 33.73 | 2.74 |
69 | 71 | 7.323420 | TGAATCATGTGGAAGACTACTACAAG | 58.677 | 38.462 | 0.00 | 0.00 | 33.03 | 3.16 |
85 | 87 | 1.226746 | CAAGAAGGAGAAAACGCGGT | 58.773 | 50.000 | 12.47 | 0.00 | 0.00 | 5.68 |
89 | 91 | 4.043037 | AGAAGGAGAAAACGCGGTATAG | 57.957 | 45.455 | 12.47 | 0.00 | 0.00 | 1.31 |
94 | 96 | 1.745087 | AGAAAACGCGGTATAGGACGA | 59.255 | 47.619 | 12.47 | 0.00 | 0.00 | 4.20 |
111 | 120 | 3.491104 | GGACGAAGGCAAATACGAGAGAT | 60.491 | 47.826 | 0.00 | 0.00 | 0.00 | 2.75 |
112 | 121 | 4.261489 | GGACGAAGGCAAATACGAGAGATA | 60.261 | 45.833 | 0.00 | 0.00 | 0.00 | 1.98 |
113 | 122 | 5.258456 | ACGAAGGCAAATACGAGAGATAA | 57.742 | 39.130 | 0.00 | 0.00 | 0.00 | 1.75 |
114 | 123 | 5.282510 | ACGAAGGCAAATACGAGAGATAAG | 58.717 | 41.667 | 0.00 | 0.00 | 0.00 | 1.73 |
115 | 124 | 4.149046 | CGAAGGCAAATACGAGAGATAAGC | 59.851 | 45.833 | 0.00 | 0.00 | 0.00 | 3.09 |
116 | 125 | 4.672587 | AGGCAAATACGAGAGATAAGCA | 57.327 | 40.909 | 0.00 | 0.00 | 0.00 | 3.91 |
117 | 126 | 5.023533 | AGGCAAATACGAGAGATAAGCAA | 57.976 | 39.130 | 0.00 | 0.00 | 0.00 | 3.91 |
118 | 127 | 5.053145 | AGGCAAATACGAGAGATAAGCAAG | 58.947 | 41.667 | 0.00 | 0.00 | 0.00 | 4.01 |
119 | 128 | 4.212214 | GGCAAATACGAGAGATAAGCAAGG | 59.788 | 45.833 | 0.00 | 0.00 | 0.00 | 3.61 |
120 | 129 | 5.050490 | GCAAATACGAGAGATAAGCAAGGA | 58.950 | 41.667 | 0.00 | 0.00 | 0.00 | 3.36 |
121 | 130 | 5.176590 | GCAAATACGAGAGATAAGCAAGGAG | 59.823 | 44.000 | 0.00 | 0.00 | 0.00 | 3.69 |
123 | 132 | 3.019799 | ACGAGAGATAAGCAAGGAGGA | 57.980 | 47.619 | 0.00 | 0.00 | 0.00 | 3.71 |
124 | 133 | 3.571590 | ACGAGAGATAAGCAAGGAGGAT | 58.428 | 45.455 | 0.00 | 0.00 | 0.00 | 3.24 |
126 | 135 | 3.663025 | GAGAGATAAGCAAGGAGGATGC | 58.337 | 50.000 | 0.00 | 0.00 | 44.15 | 3.91 |
131 | 140 | 3.512516 | GCAAGGAGGATGCGCCAC | 61.513 | 66.667 | 10.12 | 0.00 | 40.02 | 5.01 |
133 | 142 | 3.390521 | AAGGAGGATGCGCCACGA | 61.391 | 61.111 | 10.12 | 0.00 | 40.02 | 4.35 |
135 | 144 | 3.838271 | GGAGGATGCGCCACGAGA | 61.838 | 66.667 | 4.18 | 0.00 | 40.02 | 4.04 |
136 | 145 | 2.419198 | GAGGATGCGCCACGAGAT | 59.581 | 61.111 | 4.18 | 0.00 | 40.02 | 2.75 |
137 | 146 | 1.663074 | GAGGATGCGCCACGAGATC | 60.663 | 63.158 | 4.18 | 0.00 | 40.02 | 2.75 |
139 | 148 | 0.823769 | AGGATGCGCCACGAGATCTA | 60.824 | 55.000 | 4.18 | 0.00 | 40.02 | 1.98 |
140 | 149 | 0.244994 | GGATGCGCCACGAGATCTAT | 59.755 | 55.000 | 4.18 | 0.00 | 36.34 | 1.98 |
142 | 151 | 0.037882 | ATGCGCCACGAGATCTATGG | 60.038 | 55.000 | 17.71 | 17.71 | 36.51 | 2.74 |
143 | 152 | 1.106944 | TGCGCCACGAGATCTATGGA | 61.107 | 55.000 | 23.81 | 5.70 | 35.33 | 3.41 |
144 | 153 | 0.387878 | GCGCCACGAGATCTATGGAG | 60.388 | 60.000 | 23.81 | 21.50 | 35.33 | 3.86 |
145 | 154 | 0.387878 | CGCCACGAGATCTATGGAGC | 60.388 | 60.000 | 23.81 | 12.88 | 35.33 | 4.70 |
146 | 155 | 0.965439 | GCCACGAGATCTATGGAGCT | 59.035 | 55.000 | 23.81 | 0.00 | 41.28 | 4.09 |
147 | 156 | 1.336702 | GCCACGAGATCTATGGAGCTG | 60.337 | 57.143 | 23.81 | 0.00 | 38.42 | 4.24 |
148 | 157 | 1.959985 | CCACGAGATCTATGGAGCTGT | 59.040 | 52.381 | 17.28 | 0.00 | 38.42 | 4.40 |
149 | 158 | 2.288091 | CCACGAGATCTATGGAGCTGTG | 60.288 | 54.545 | 17.28 | 10.18 | 38.42 | 3.66 |
150 | 159 | 2.620585 | CACGAGATCTATGGAGCTGTGA | 59.379 | 50.000 | 16.26 | 0.00 | 38.42 | 3.58 |
152 | 161 | 2.228582 | CGAGATCTATGGAGCTGTGAGG | 59.771 | 54.545 | 0.00 | 0.00 | 38.42 | 3.86 |
153 | 162 | 3.230134 | GAGATCTATGGAGCTGTGAGGT | 58.770 | 50.000 | 0.00 | 0.00 | 38.42 | 3.85 |
156 | 165 | 2.540383 | TCTATGGAGCTGTGAGGTGTT | 58.460 | 47.619 | 0.00 | 0.00 | 0.00 | 3.32 |
157 | 166 | 2.234661 | TCTATGGAGCTGTGAGGTGTTG | 59.765 | 50.000 | 0.00 | 0.00 | 0.00 | 3.33 |
158 | 167 | 0.037303 | ATGGAGCTGTGAGGTGTTGG | 59.963 | 55.000 | 0.00 | 0.00 | 0.00 | 3.77 |
161 | 170 | 0.394565 | GAGCTGTGAGGTGTTGGTCT | 59.605 | 55.000 | 0.00 | 0.00 | 0.00 | 3.85 |
162 | 171 | 0.839946 | AGCTGTGAGGTGTTGGTCTT | 59.160 | 50.000 | 0.00 | 0.00 | 0.00 | 3.01 |
163 | 172 | 1.212935 | AGCTGTGAGGTGTTGGTCTTT | 59.787 | 47.619 | 0.00 | 0.00 | 0.00 | 2.52 |
164 | 173 | 2.024414 | GCTGTGAGGTGTTGGTCTTTT | 58.976 | 47.619 | 0.00 | 0.00 | 0.00 | 2.27 |
165 | 174 | 2.427095 | GCTGTGAGGTGTTGGTCTTTTT | 59.573 | 45.455 | 0.00 | 0.00 | 0.00 | 1.94 |
220 | 229 | 3.797256 | ACTTGACGTCTTCTTTTCTCACG | 59.203 | 43.478 | 17.92 | 0.00 | 36.54 | 4.35 |
226 | 235 | 4.166523 | CGTCTTCTTTTCTCACGCTGATA | 58.833 | 43.478 | 0.00 | 0.00 | 0.00 | 2.15 |
227 | 236 | 4.030753 | CGTCTTCTTTTCTCACGCTGATAC | 59.969 | 45.833 | 0.00 | 0.00 | 0.00 | 2.24 |
232 | 241 | 4.393990 | TCTTTTCTCACGCTGATACGTAGA | 59.606 | 41.667 | 0.08 | 0.00 | 46.34 | 2.59 |
233 | 242 | 3.946308 | TTCTCACGCTGATACGTAGAG | 57.054 | 47.619 | 0.08 | 0.57 | 46.34 | 2.43 |
234 | 243 | 2.210961 | TCTCACGCTGATACGTAGAGG | 58.789 | 52.381 | 0.08 | 0.00 | 46.34 | 3.69 |
235 | 244 | 2.159000 | TCTCACGCTGATACGTAGAGGA | 60.159 | 50.000 | 0.08 | 0.00 | 46.34 | 3.71 |
236 | 245 | 2.210961 | TCACGCTGATACGTAGAGGAG | 58.789 | 52.381 | 0.08 | 0.00 | 46.34 | 3.69 |
237 | 246 | 2.159000 | TCACGCTGATACGTAGAGGAGA | 60.159 | 50.000 | 0.08 | 0.00 | 46.34 | 3.71 |
238 | 247 | 2.809119 | CACGCTGATACGTAGAGGAGAT | 59.191 | 50.000 | 0.08 | 0.00 | 46.34 | 2.75 |
239 | 248 | 3.995048 | CACGCTGATACGTAGAGGAGATA | 59.005 | 47.826 | 0.08 | 0.00 | 46.34 | 1.98 |
240 | 249 | 4.451435 | CACGCTGATACGTAGAGGAGATAA | 59.549 | 45.833 | 0.08 | 0.00 | 46.34 | 1.75 |
241 | 250 | 4.691685 | ACGCTGATACGTAGAGGAGATAAG | 59.308 | 45.833 | 0.08 | 0.00 | 46.19 | 1.73 |
242 | 251 | 4.436317 | CGCTGATACGTAGAGGAGATAAGC | 60.436 | 50.000 | 0.08 | 0.00 | 0.00 | 3.09 |
246 | 255 | 1.957877 | ACGTAGAGGAGATAAGCTGCC | 59.042 | 52.381 | 0.00 | 0.00 | 35.18 | 4.85 |
249 | 258 | 0.397816 | AGAGGAGATAAGCTGCCGGT | 60.398 | 55.000 | 1.90 | 0.00 | 35.18 | 5.28 |
255 | 264 | 1.432270 | GATAAGCTGCCGGTGTGAGC | 61.432 | 60.000 | 1.90 | 6.04 | 0.00 | 4.26 |
268 | 277 | 4.927782 | TGAGCGTGCCAGCGGTTT | 62.928 | 61.111 | 0.00 | 0.00 | 42.89 | 3.27 |
272 | 281 | 2.613506 | GCGTGCCAGCGGTTTAGTT | 61.614 | 57.895 | 0.00 | 0.00 | 0.00 | 2.24 |
273 | 282 | 1.293267 | GCGTGCCAGCGGTTTAGTTA | 61.293 | 55.000 | 0.00 | 0.00 | 0.00 | 2.24 |
304 | 313 | 4.424711 | GCCCATGGAAGCCACCGA | 62.425 | 66.667 | 15.22 | 0.00 | 35.80 | 4.69 |
307 | 316 | 2.825836 | CATGGAAGCCACCGAGCC | 60.826 | 66.667 | 0.00 | 0.00 | 35.80 | 4.70 |
315 | 324 | 3.411351 | CCACCGAGCCAACGTTCG | 61.411 | 66.667 | 0.00 | 0.00 | 41.85 | 3.95 |
318 | 327 | 3.041940 | CCGAGCCAACGTTCGCTT | 61.042 | 61.111 | 21.37 | 5.75 | 40.96 | 4.68 |
320 | 329 | 1.286354 | CCGAGCCAACGTTCGCTTTA | 61.286 | 55.000 | 21.37 | 0.00 | 40.96 | 1.85 |
324 | 333 | 3.184541 | GAGCCAACGTTCGCTTTATAGA | 58.815 | 45.455 | 21.37 | 0.00 | 34.84 | 1.98 |
325 | 334 | 3.592059 | AGCCAACGTTCGCTTTATAGAA | 58.408 | 40.909 | 15.01 | 0.00 | 28.56 | 2.10 |
326 | 335 | 4.189231 | AGCCAACGTTCGCTTTATAGAAT | 58.811 | 39.130 | 15.01 | 0.00 | 28.56 | 2.40 |
327 | 336 | 4.634443 | AGCCAACGTTCGCTTTATAGAATT | 59.366 | 37.500 | 15.01 | 0.00 | 28.56 | 2.17 |
328 | 337 | 5.123344 | AGCCAACGTTCGCTTTATAGAATTT | 59.877 | 36.000 | 15.01 | 0.00 | 28.56 | 1.82 |
330 | 339 | 6.237201 | GCCAACGTTCGCTTTATAGAATTTTG | 60.237 | 38.462 | 10.84 | 0.00 | 0.00 | 2.44 |
333 | 342 | 9.320406 | CAACGTTCGCTTTATAGAATTTTGTTA | 57.680 | 29.630 | 0.00 | 0.00 | 0.00 | 2.41 |
469 | 487 | 1.428869 | CAAATCCAAAACCACCCCCA | 58.571 | 50.000 | 0.00 | 0.00 | 0.00 | 4.96 |
514 | 533 | 0.179045 | AAGTCACAGCACCAGTCCAC | 60.179 | 55.000 | 0.00 | 0.00 | 0.00 | 4.02 |
517 | 536 | 3.570212 | ACAGCACCAGTCCACCCC | 61.570 | 66.667 | 0.00 | 0.00 | 0.00 | 4.95 |
518 | 537 | 3.569210 | CAGCACCAGTCCACCCCA | 61.569 | 66.667 | 0.00 | 0.00 | 0.00 | 4.96 |
519 | 538 | 3.570212 | AGCACCAGTCCACCCCAC | 61.570 | 66.667 | 0.00 | 0.00 | 0.00 | 4.61 |
984 | 1014 | 4.024984 | CTCCCTCCCTCCCCACCA | 62.025 | 72.222 | 0.00 | 0.00 | 0.00 | 4.17 |
1098 | 1128 | 3.823330 | GAGGACGACGCCACCGAT | 61.823 | 66.667 | 10.28 | 0.00 | 38.29 | 4.18 |
1157 | 1190 | 4.849329 | CGCGGACGCAGGGTACTC | 62.849 | 72.222 | 17.35 | 0.00 | 42.06 | 2.59 |
1524 | 1576 | 4.846779 | TGTTCAGTTAATTCAGCAACCC | 57.153 | 40.909 | 0.00 | 0.00 | 0.00 | 4.11 |
1526 | 1578 | 1.810151 | TCAGTTAATTCAGCAACCCGC | 59.190 | 47.619 | 0.00 | 0.00 | 42.91 | 6.13 |
1597 | 1649 | 4.112634 | TGTTTGCTCGATTCGATTAGGAG | 58.887 | 43.478 | 9.54 | 0.00 | 34.61 | 3.69 |
1599 | 1651 | 2.583143 | TGCTCGATTCGATTAGGAGGA | 58.417 | 47.619 | 9.54 | 0.00 | 34.61 | 3.71 |
1639 | 1691 | 3.984508 | GATGATTGCATCTCCCAAGTG | 57.015 | 47.619 | 0.00 | 0.00 | 45.93 | 3.16 |
1648 | 1703 | 0.608130 | TCTCCCAAGTGTCATCGTGG | 59.392 | 55.000 | 0.00 | 0.00 | 36.87 | 4.94 |
1684 | 1758 | 7.877003 | TCTGCTAATTACAGTCTATCTACAGC | 58.123 | 38.462 | 12.04 | 0.00 | 36.50 | 4.40 |
1693 | 1767 | 9.967346 | TTACAGTCTATCTACAGCATTACAATC | 57.033 | 33.333 | 0.00 | 0.00 | 0.00 | 2.67 |
1694 | 1768 | 8.243961 | ACAGTCTATCTACAGCATTACAATCT | 57.756 | 34.615 | 0.00 | 0.00 | 0.00 | 2.40 |
1695 | 1769 | 8.140628 | ACAGTCTATCTACAGCATTACAATCTG | 58.859 | 37.037 | 0.00 | 0.00 | 0.00 | 2.90 |
1696 | 1770 | 7.116090 | CAGTCTATCTACAGCATTACAATCTGC | 59.884 | 40.741 | 0.00 | 0.00 | 38.69 | 4.26 |
1698 | 1772 | 8.300286 | GTCTATCTACAGCATTACAATCTGCTA | 58.700 | 37.037 | 0.00 | 0.00 | 46.62 | 3.49 |
1699 | 1773 | 8.860088 | TCTATCTACAGCATTACAATCTGCTAA | 58.140 | 33.333 | 0.00 | 0.00 | 46.62 | 3.09 |
1700 | 1774 | 9.650539 | CTATCTACAGCATTACAATCTGCTAAT | 57.349 | 33.333 | 0.00 | 0.00 | 46.62 | 1.73 |
1701 | 1775 | 8.915057 | ATCTACAGCATTACAATCTGCTAATT | 57.085 | 30.769 | 0.00 | 0.00 | 46.62 | 1.40 |
1703 | 1777 | 9.261180 | TCTACAGCATTACAATCTGCTAATTAC | 57.739 | 33.333 | 0.00 | 0.00 | 46.62 | 1.89 |
1704 | 1778 | 6.948353 | ACAGCATTACAATCTGCTAATTACG | 58.052 | 36.000 | 0.00 | 0.00 | 46.62 | 3.18 |
1705 | 1779 | 6.017934 | ACAGCATTACAATCTGCTAATTACGG | 60.018 | 38.462 | 0.00 | 0.00 | 46.62 | 4.02 |
1706 | 1780 | 6.017934 | CAGCATTACAATCTGCTAATTACGGT | 60.018 | 38.462 | 0.00 | 0.00 | 46.62 | 4.83 |
1707 | 1781 | 6.202954 | AGCATTACAATCTGCTAATTACGGTC | 59.797 | 38.462 | 0.00 | 0.00 | 46.49 | 4.79 |
1708 | 1782 | 6.202954 | GCATTACAATCTGCTAATTACGGTCT | 59.797 | 38.462 | 0.00 | 0.00 | 35.49 | 3.85 |
1709 | 1783 | 7.384115 | GCATTACAATCTGCTAATTACGGTCTA | 59.616 | 37.037 | 0.00 | 0.00 | 35.49 | 2.59 |
1710 | 1784 | 9.424319 | CATTACAATCTGCTAATTACGGTCTAT | 57.576 | 33.333 | 0.00 | 0.00 | 0.00 | 1.98 |
1711 | 1785 | 9.640963 | ATTACAATCTGCTAATTACGGTCTATC | 57.359 | 33.333 | 0.00 | 0.00 | 0.00 | 2.08 |
1712 | 1786 | 7.291411 | ACAATCTGCTAATTACGGTCTATCT | 57.709 | 36.000 | 0.00 | 0.00 | 0.00 | 1.98 |
1713 | 1787 | 8.405418 | ACAATCTGCTAATTACGGTCTATCTA | 57.595 | 34.615 | 0.00 | 0.00 | 0.00 | 1.98 |
1714 | 1788 | 8.298140 | ACAATCTGCTAATTACGGTCTATCTAC | 58.702 | 37.037 | 0.00 | 0.00 | 0.00 | 2.59 |
1715 | 1789 | 7.997773 | ATCTGCTAATTACGGTCTATCTACA | 57.002 | 36.000 | 0.00 | 0.00 | 0.00 | 2.74 |
1716 | 1790 | 7.436430 | TCTGCTAATTACGGTCTATCTACAG | 57.564 | 40.000 | 0.00 | 0.00 | 0.00 | 2.74 |
1717 | 1791 | 6.996879 | TCTGCTAATTACGGTCTATCTACAGT | 59.003 | 38.462 | 0.00 | 0.00 | 0.00 | 3.55 |
1718 | 1792 | 8.152898 | TCTGCTAATTACGGTCTATCTACAGTA | 58.847 | 37.037 | 0.00 | 0.00 | 0.00 | 2.74 |
1719 | 1793 | 8.859236 | TGCTAATTACGGTCTATCTACAGTAT | 57.141 | 34.615 | 0.00 | 0.00 | 31.55 | 2.12 |
1720 | 1794 | 9.293404 | TGCTAATTACGGTCTATCTACAGTATT | 57.707 | 33.333 | 0.00 | 0.00 | 31.55 | 1.89 |
1823 | 1897 | 6.927294 | ATTTAGAGTAAGTGCTTACATGGC | 57.073 | 37.500 | 20.14 | 9.32 | 45.79 | 4.40 |
1845 | 1919 | 4.034975 | GCTGTCATAGAAAAGTGCTGGATC | 59.965 | 45.833 | 0.00 | 0.00 | 0.00 | 3.36 |
1846 | 1920 | 5.164620 | TGTCATAGAAAAGTGCTGGATCA | 57.835 | 39.130 | 0.00 | 0.00 | 0.00 | 2.92 |
1902 | 1977 | 8.537858 | AGTTCCTTAGAGTAAATCGTGGTTTAT | 58.462 | 33.333 | 0.00 | 0.00 | 0.00 | 1.40 |
1903 | 1978 | 9.159364 | GTTCCTTAGAGTAAATCGTGGTTTATT | 57.841 | 33.333 | 0.00 | 0.00 | 0.00 | 1.40 |
1904 | 1979 | 9.729281 | TTCCTTAGAGTAAATCGTGGTTTATTT | 57.271 | 29.630 | 0.00 | 0.00 | 0.00 | 1.40 |
2008 | 2083 | 3.724374 | TGTATGCTACCGATAGTTTGGC | 58.276 | 45.455 | 0.00 | 0.00 | 0.00 | 4.52 |
2013 | 2088 | 3.376859 | TGCTACCGATAGTTTGGCATTTG | 59.623 | 43.478 | 0.00 | 0.00 | 0.00 | 2.32 |
2047 | 2126 | 3.234353 | CTCAGTACCCCATGATGAGCTA | 58.766 | 50.000 | 0.00 | 0.00 | 31.83 | 3.32 |
2104 | 2183 | 9.136952 | CTGTAGCGTAACTGATACTTTACTTTT | 57.863 | 33.333 | 0.00 | 0.00 | 32.13 | 2.27 |
2211 | 2293 | 4.683334 | GAACACAACGCAGCCGCC | 62.683 | 66.667 | 0.00 | 0.00 | 38.22 | 6.13 |
2287 | 2369 | 3.246226 | GTGGCATATTCTTGTACTCTGCG | 59.754 | 47.826 | 0.00 | 0.00 | 0.00 | 5.18 |
2312 | 2394 | 4.300803 | TGCATTGCTTTTCTGAACATGTC | 58.699 | 39.130 | 10.49 | 0.00 | 0.00 | 3.06 |
2314 | 2396 | 5.241285 | TGCATTGCTTTTCTGAACATGTCTA | 59.759 | 36.000 | 10.49 | 0.00 | 0.00 | 2.59 |
2364 | 2456 | 7.329717 | CCTATCGGCAACTCTAATTCTGTATTC | 59.670 | 40.741 | 0.00 | 0.00 | 0.00 | 1.75 |
2410 | 2502 | 7.416817 | TGTAGACTTGATGAATTTGTGTTGTG | 58.583 | 34.615 | 0.00 | 0.00 | 0.00 | 3.33 |
2455 | 2547 | 1.950828 | CTCTGTGTGATCTGGGCATC | 58.049 | 55.000 | 0.00 | 0.00 | 0.00 | 3.91 |
2463 | 2555 | 0.394192 | GATCTGGGCATCGTGATGGA | 59.606 | 55.000 | 11.54 | 1.18 | 39.16 | 3.41 |
2497 | 2589 | 6.129009 | GCTTCATTTTTGCTGTGATAGTTGTG | 60.129 | 38.462 | 0.00 | 0.00 | 0.00 | 3.33 |
2554 | 2646 | 4.476846 | TCCTTGGATAATGGCCTTGAGTTA | 59.523 | 41.667 | 3.32 | 0.00 | 0.00 | 2.24 |
2674 | 2766 | 4.533919 | TTCCCTTGCATGGTGTAAATTG | 57.466 | 40.909 | 16.81 | 0.04 | 0.00 | 2.32 |
2689 | 2781 | 6.371548 | GGTGTAAATTGTGCTCTGTCTATGAA | 59.628 | 38.462 | 0.00 | 0.00 | 0.00 | 2.57 |
2703 | 2797 | 9.227490 | CTCTGTCTATGAACTATAGTTTGAACG | 57.773 | 37.037 | 18.96 | 7.77 | 39.83 | 3.95 |
2899 | 2993 | 1.743394 | CGTGAGGGGGCATTTCTTAAC | 59.257 | 52.381 | 0.00 | 0.00 | 0.00 | 2.01 |
2906 | 3000 | 6.002653 | AGGGGGCATTTCTTAACTAAGTAG | 57.997 | 41.667 | 0.00 | 0.00 | 34.93 | 2.57 |
2967 | 3061 | 2.948979 | TGGTGTTCTGCAGATTTTCGTT | 59.051 | 40.909 | 19.04 | 0.00 | 0.00 | 3.85 |
3030 | 3124 | 3.706594 | ACTGGAAATCAATCTCGGAGCTA | 59.293 | 43.478 | 0.00 | 0.00 | 0.00 | 3.32 |
3111 | 3205 | 0.107508 | CCATCGCAGTCATTCAGGGT | 60.108 | 55.000 | 0.00 | 0.00 | 0.00 | 4.34 |
3150 | 3244 | 3.148279 | GACCTCTCCCGGATGCGT | 61.148 | 66.667 | 0.73 | 0.00 | 0.00 | 5.24 |
3418 | 3519 | 7.671302 | TGACTATGCTTAGACTGAAACTTCTT | 58.329 | 34.615 | 13.22 | 0.00 | 0.00 | 2.52 |
3434 | 3535 | 9.137459 | TGAAACTTCTTATGTTTTCAATACCCA | 57.863 | 29.630 | 0.00 | 0.00 | 37.70 | 4.51 |
3475 | 3577 | 5.344743 | AGCGATCTTTTTGTAGAGATCCA | 57.655 | 39.130 | 7.54 | 0.00 | 43.34 | 3.41 |
3478 | 3580 | 5.220491 | GCGATCTTTTTGTAGAGATCCACAC | 60.220 | 44.000 | 7.54 | 0.00 | 43.34 | 3.82 |
3480 | 3582 | 5.560722 | TCTTTTTGTAGAGATCCACACCA | 57.439 | 39.130 | 0.00 | 0.00 | 0.00 | 4.17 |
3630 | 3732 | 5.619625 | AAGCTGAGAAGTTAACTGAATGC | 57.380 | 39.130 | 9.34 | 10.25 | 0.00 | 3.56 |
3647 | 3749 | 1.018910 | TGCGATGACATGCCTGATTG | 58.981 | 50.000 | 0.00 | 0.00 | 0.00 | 2.67 |
3648 | 3750 | 1.302366 | GCGATGACATGCCTGATTGA | 58.698 | 50.000 | 0.00 | 0.00 | 0.00 | 2.57 |
3649 | 3751 | 1.878088 | GCGATGACATGCCTGATTGAT | 59.122 | 47.619 | 0.00 | 0.00 | 0.00 | 2.57 |
3650 | 3752 | 2.350484 | GCGATGACATGCCTGATTGATG | 60.350 | 50.000 | 0.00 | 0.00 | 0.00 | 3.07 |
3651 | 3753 | 3.135994 | CGATGACATGCCTGATTGATGA | 58.864 | 45.455 | 0.00 | 0.00 | 0.00 | 2.92 |
3652 | 3754 | 3.059120 | CGATGACATGCCTGATTGATGAC | 60.059 | 47.826 | 0.00 | 0.00 | 0.00 | 3.06 |
3655 | 3757 | 3.199289 | TGACATGCCTGATTGATGACTCT | 59.801 | 43.478 | 0.00 | 0.00 | 0.00 | 3.24 |
3656 | 3758 | 3.542648 | ACATGCCTGATTGATGACTCTG | 58.457 | 45.455 | 0.00 | 0.00 | 0.00 | 3.35 |
3657 | 3759 | 2.034104 | TGCCTGATTGATGACTCTGC | 57.966 | 50.000 | 0.00 | 0.00 | 0.00 | 4.26 |
3658 | 3760 | 1.279846 | TGCCTGATTGATGACTCTGCA | 59.720 | 47.619 | 0.00 | 0.00 | 0.00 | 4.41 |
3659 | 3761 | 2.290450 | TGCCTGATTGATGACTCTGCAA | 60.290 | 45.455 | 0.00 | 0.00 | 0.00 | 4.08 |
3660 | 3762 | 2.751259 | GCCTGATTGATGACTCTGCAAA | 59.249 | 45.455 | 0.00 | 0.00 | 0.00 | 3.68 |
3661 | 3763 | 3.380637 | GCCTGATTGATGACTCTGCAAAT | 59.619 | 43.478 | 0.00 | 0.00 | 0.00 | 2.32 |
3662 | 3764 | 4.733815 | GCCTGATTGATGACTCTGCAAATG | 60.734 | 45.833 | 0.00 | 0.00 | 0.00 | 2.32 |
3663 | 3765 | 4.352039 | CTGATTGATGACTCTGCAAATGC | 58.648 | 43.478 | 0.00 | 0.00 | 42.50 | 3.56 |
3664 | 3766 | 4.014406 | TGATTGATGACTCTGCAAATGCT | 58.986 | 39.130 | 6.97 | 0.00 | 42.66 | 3.79 |
3665 | 3767 | 5.187687 | TGATTGATGACTCTGCAAATGCTA | 58.812 | 37.500 | 6.97 | 0.00 | 42.66 | 3.49 |
3666 | 3768 | 5.826208 | TGATTGATGACTCTGCAAATGCTAT | 59.174 | 36.000 | 6.97 | 0.00 | 42.66 | 2.97 |
3667 | 3769 | 6.320418 | TGATTGATGACTCTGCAAATGCTATT | 59.680 | 34.615 | 6.97 | 0.00 | 42.66 | 1.73 |
3668 | 3770 | 5.746307 | TGATGACTCTGCAAATGCTATTC | 57.254 | 39.130 | 6.97 | 0.34 | 42.66 | 1.75 |
3669 | 3771 | 5.187687 | TGATGACTCTGCAAATGCTATTCA | 58.812 | 37.500 | 6.97 | 5.60 | 42.66 | 2.57 |
3670 | 3772 | 5.648960 | TGATGACTCTGCAAATGCTATTCAA | 59.351 | 36.000 | 6.97 | 0.00 | 42.66 | 2.69 |
3671 | 3773 | 5.300969 | TGACTCTGCAAATGCTATTCAAC | 57.699 | 39.130 | 6.97 | 0.00 | 42.66 | 3.18 |
3672 | 3774 | 5.005740 | TGACTCTGCAAATGCTATTCAACT | 58.994 | 37.500 | 6.97 | 0.00 | 42.66 | 3.16 |
3673 | 3775 | 6.172630 | TGACTCTGCAAATGCTATTCAACTA | 58.827 | 36.000 | 6.97 | 0.00 | 42.66 | 2.24 |
3674 | 3776 | 6.092670 | TGACTCTGCAAATGCTATTCAACTAC | 59.907 | 38.462 | 6.97 | 0.00 | 42.66 | 2.73 |
3675 | 3777 | 6.176183 | ACTCTGCAAATGCTATTCAACTACT | 58.824 | 36.000 | 6.97 | 0.00 | 42.66 | 2.57 |
3676 | 3778 | 6.314896 | ACTCTGCAAATGCTATTCAACTACTC | 59.685 | 38.462 | 6.97 | 0.00 | 42.66 | 2.59 |
3677 | 3779 | 5.586243 | TCTGCAAATGCTATTCAACTACTCC | 59.414 | 40.000 | 6.97 | 0.00 | 42.66 | 3.85 |
3678 | 3780 | 5.252547 | TGCAAATGCTATTCAACTACTCCA | 58.747 | 37.500 | 6.97 | 0.00 | 42.66 | 3.86 |
3679 | 3781 | 5.123820 | TGCAAATGCTATTCAACTACTCCAC | 59.876 | 40.000 | 6.97 | 0.00 | 42.66 | 4.02 |
3680 | 3782 | 5.355350 | GCAAATGCTATTCAACTACTCCACT | 59.645 | 40.000 | 0.00 | 0.00 | 38.21 | 4.00 |
3681 | 3783 | 6.127897 | GCAAATGCTATTCAACTACTCCACTT | 60.128 | 38.462 | 0.00 | 0.00 | 38.21 | 3.16 |
3682 | 3784 | 7.467623 | CAAATGCTATTCAACTACTCCACTTC | 58.532 | 38.462 | 0.00 | 0.00 | 0.00 | 3.01 |
3683 | 3785 | 5.738619 | TGCTATTCAACTACTCCACTTCA | 57.261 | 39.130 | 0.00 | 0.00 | 0.00 | 3.02 |
3684 | 3786 | 6.299805 | TGCTATTCAACTACTCCACTTCAT | 57.700 | 37.500 | 0.00 | 0.00 | 0.00 | 2.57 |
3685 | 3787 | 6.108687 | TGCTATTCAACTACTCCACTTCATG | 58.891 | 40.000 | 0.00 | 0.00 | 0.00 | 3.07 |
3686 | 3788 | 5.007136 | GCTATTCAACTACTCCACTTCATGC | 59.993 | 44.000 | 0.00 | 0.00 | 0.00 | 4.06 |
3687 | 3789 | 4.623932 | TTCAACTACTCCACTTCATGCT | 57.376 | 40.909 | 0.00 | 0.00 | 0.00 | 3.79 |
3688 | 3790 | 3.930336 | TCAACTACTCCACTTCATGCTG | 58.070 | 45.455 | 0.00 | 0.00 | 0.00 | 4.41 |
3689 | 3791 | 3.324846 | TCAACTACTCCACTTCATGCTGT | 59.675 | 43.478 | 0.00 | 0.00 | 0.00 | 4.40 |
3690 | 3792 | 3.601443 | ACTACTCCACTTCATGCTGTC | 57.399 | 47.619 | 0.00 | 0.00 | 0.00 | 3.51 |
3691 | 3793 | 2.234908 | ACTACTCCACTTCATGCTGTCC | 59.765 | 50.000 | 0.00 | 0.00 | 0.00 | 4.02 |
3692 | 3794 | 1.059098 | ACTCCACTTCATGCTGTCCA | 58.941 | 50.000 | 0.00 | 0.00 | 0.00 | 4.02 |
3693 | 3795 | 1.421268 | ACTCCACTTCATGCTGTCCAA | 59.579 | 47.619 | 0.00 | 0.00 | 0.00 | 3.53 |
3694 | 3796 | 2.158623 | ACTCCACTTCATGCTGTCCAAA | 60.159 | 45.455 | 0.00 | 0.00 | 0.00 | 3.28 |
3695 | 3797 | 2.227388 | CTCCACTTCATGCTGTCCAAAC | 59.773 | 50.000 | 0.00 | 0.00 | 0.00 | 2.93 |
3696 | 3798 | 1.955778 | CCACTTCATGCTGTCCAAACA | 59.044 | 47.619 | 0.00 | 0.00 | 0.00 | 2.83 |
3697 | 3799 | 2.361757 | CCACTTCATGCTGTCCAAACAA | 59.638 | 45.455 | 0.00 | 0.00 | 34.24 | 2.83 |
3698 | 3800 | 3.551454 | CCACTTCATGCTGTCCAAACAAG | 60.551 | 47.826 | 0.00 | 0.00 | 34.24 | 3.16 |
3733 | 3835 | 1.602311 | GCCCTGGCATGAATCACTAG | 58.398 | 55.000 | 2.58 | 0.00 | 41.49 | 2.57 |
3738 | 3840 | 4.285517 | CCCTGGCATGAATCACTAGTCTAT | 59.714 | 45.833 | 0.00 | 0.00 | 0.00 | 1.98 |
3760 | 3868 | 6.604735 | ATTATTTACAGCTTCTACTTGCCG | 57.395 | 37.500 | 0.00 | 0.00 | 0.00 | 5.69 |
3763 | 3871 | 0.036010 | ACAGCTTCTACTTGCCGCAT | 60.036 | 50.000 | 0.00 | 0.00 | 0.00 | 4.73 |
3765 | 3873 | 1.089920 | AGCTTCTACTTGCCGCATTG | 58.910 | 50.000 | 0.00 | 0.00 | 0.00 | 2.82 |
3767 | 3875 | 1.202076 | GCTTCTACTTGCCGCATTGAC | 60.202 | 52.381 | 0.00 | 0.00 | 0.00 | 3.18 |
3769 | 3877 | 1.438651 | TCTACTTGCCGCATTGACAC | 58.561 | 50.000 | 0.00 | 0.00 | 0.00 | 3.67 |
3770 | 3878 | 1.155889 | CTACTTGCCGCATTGACACA | 58.844 | 50.000 | 0.00 | 0.00 | 0.00 | 3.72 |
3772 | 3880 | 0.743688 | ACTTGCCGCATTGACACAAA | 59.256 | 45.000 | 0.00 | 0.00 | 0.00 | 2.83 |
3773 | 3881 | 1.130955 | CTTGCCGCATTGACACAAAC | 58.869 | 50.000 | 0.00 | 0.00 | 0.00 | 2.93 |
3775 | 3883 | 0.248825 | TGCCGCATTGACACAAACAC | 60.249 | 50.000 | 0.00 | 0.00 | 0.00 | 3.32 |
3781 | 3889 | 3.365832 | GCATTGACACAAACACACTCAG | 58.634 | 45.455 | 0.00 | 0.00 | 0.00 | 3.35 |
3788 | 3896 | 1.233019 | CAAACACACTCAGGAGCAGG | 58.767 | 55.000 | 0.00 | 0.00 | 0.00 | 4.85 |
3793 | 3901 | 1.375652 | CACTCAGGAGCAGGCACAG | 60.376 | 63.158 | 0.00 | 0.00 | 0.00 | 3.66 |
3796 | 3904 | 3.054503 | CAGGAGCAGGCACAGTGC | 61.055 | 66.667 | 17.97 | 17.97 | 44.08 | 4.40 |
3811 | 3919 | 6.220579 | GCACAGTGCACATATCTAAGTATG | 57.779 | 41.667 | 21.22 | 6.19 | 44.26 | 2.39 |
3812 | 3920 | 5.755375 | GCACAGTGCACATATCTAAGTATGT | 59.245 | 40.000 | 21.22 | 6.88 | 44.26 | 2.29 |
3833 | 3941 | 1.069358 | GCTGCCCTCTATGGTACTGTC | 59.931 | 57.143 | 0.00 | 0.00 | 0.00 | 3.51 |
3842 | 3950 | 4.275810 | TCTATGGTACTGTCACCCTACAC | 58.724 | 47.826 | 0.00 | 0.00 | 37.84 | 2.90 |
3846 | 3956 | 4.418359 | TGGTACTGTCACCCTACACAATA | 58.582 | 43.478 | 0.00 | 0.00 | 37.84 | 1.90 |
3847 | 3957 | 4.839550 | TGGTACTGTCACCCTACACAATAA | 59.160 | 41.667 | 0.00 | 0.00 | 37.84 | 1.40 |
3848 | 3958 | 5.486063 | TGGTACTGTCACCCTACACAATAAT | 59.514 | 40.000 | 0.00 | 0.00 | 37.84 | 1.28 |
3849 | 3959 | 5.815740 | GGTACTGTCACCCTACACAATAATG | 59.184 | 44.000 | 0.00 | 0.00 | 31.91 | 1.90 |
3850 | 3960 | 4.261801 | ACTGTCACCCTACACAATAATGC | 58.738 | 43.478 | 0.00 | 0.00 | 0.00 | 3.56 |
3851 | 3961 | 4.260985 | CTGTCACCCTACACAATAATGCA | 58.739 | 43.478 | 0.00 | 0.00 | 0.00 | 3.96 |
3853 | 3963 | 4.699735 | TGTCACCCTACACAATAATGCAAG | 59.300 | 41.667 | 0.00 | 0.00 | 0.00 | 4.01 |
3854 | 3964 | 4.700213 | GTCACCCTACACAATAATGCAAGT | 59.300 | 41.667 | 0.00 | 0.00 | 0.00 | 3.16 |
3857 | 3968 | 4.943705 | ACCCTACACAATAATGCAAGTGAG | 59.056 | 41.667 | 11.72 | 0.00 | 35.97 | 3.51 |
3903 | 4015 | 2.025887 | CCTTGTTTCACCTAGGGCTGAT | 60.026 | 50.000 | 14.81 | 0.00 | 0.00 | 2.90 |
4033 | 4145 | 5.069251 | GCTATTGTACTCACTGATGTACCCT | 59.931 | 44.000 | 12.47 | 6.19 | 38.48 | 4.34 |
4039 | 4151 | 2.586079 | CTGATGTACCCTGGCGCG | 60.586 | 66.667 | 0.00 | 0.00 | 0.00 | 6.86 |
4210 | 4322 | 2.087646 | GGATCAACCAGTTCCTTGAGC | 58.912 | 52.381 | 0.00 | 0.00 | 38.79 | 4.26 |
4262 | 4378 | 4.974645 | TGTCAATGTTCAGGGTTAGACT | 57.025 | 40.909 | 0.00 | 0.00 | 0.00 | 3.24 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
0 | 1 | 7.041848 | TGCTTATCCATGAGATTACAAATCGTG | 60.042 | 37.037 | 0.00 | 0.00 | 36.33 | 4.35 |
1 | 2 | 6.992123 | TGCTTATCCATGAGATTACAAATCGT | 59.008 | 34.615 | 0.00 | 0.00 | 36.33 | 3.73 |
7 | 8 | 7.039714 | AGTCGTATGCTTATCCATGAGATTACA | 60.040 | 37.037 | 0.00 | 0.00 | 36.33 | 2.41 |
10 | 11 | 6.352016 | AGTCGTATGCTTATCCATGAGATT | 57.648 | 37.500 | 0.00 | 0.00 | 36.33 | 2.40 |
11 | 12 | 5.991933 | AGTCGTATGCTTATCCATGAGAT | 57.008 | 39.130 | 0.00 | 0.00 | 39.15 | 2.75 |
20 | 21 | 4.099573 | AGTGTTGCCTAGTCGTATGCTTAT | 59.900 | 41.667 | 0.00 | 0.00 | 0.00 | 1.73 |
21 | 22 | 3.446161 | AGTGTTGCCTAGTCGTATGCTTA | 59.554 | 43.478 | 0.00 | 0.00 | 0.00 | 3.09 |
28 | 30 | 2.902705 | TTCAAGTGTTGCCTAGTCGT | 57.097 | 45.000 | 0.00 | 0.00 | 0.00 | 4.34 |
30 | 32 | 4.697352 | ACATGATTCAAGTGTTGCCTAGTC | 59.303 | 41.667 | 0.00 | 0.00 | 0.00 | 2.59 |
34 | 36 | 2.559668 | CCACATGATTCAAGTGTTGCCT | 59.440 | 45.455 | 17.88 | 0.00 | 32.14 | 4.75 |
57 | 59 | 6.679843 | CGTTTTCTCCTTCTTGTAGTAGTCT | 58.320 | 40.000 | 0.00 | 0.00 | 0.00 | 3.24 |
61 | 63 | 4.232221 | CGCGTTTTCTCCTTCTTGTAGTA | 58.768 | 43.478 | 0.00 | 0.00 | 0.00 | 1.82 |
62 | 64 | 3.057734 | CGCGTTTTCTCCTTCTTGTAGT | 58.942 | 45.455 | 0.00 | 0.00 | 0.00 | 2.73 |
63 | 65 | 2.412089 | CCGCGTTTTCTCCTTCTTGTAG | 59.588 | 50.000 | 4.92 | 0.00 | 0.00 | 2.74 |
64 | 66 | 2.224113 | ACCGCGTTTTCTCCTTCTTGTA | 60.224 | 45.455 | 4.92 | 0.00 | 0.00 | 2.41 |
67 | 69 | 2.825861 | TACCGCGTTTTCTCCTTCTT | 57.174 | 45.000 | 4.92 | 0.00 | 0.00 | 2.52 |
69 | 71 | 3.121544 | CCTATACCGCGTTTTCTCCTTC | 58.878 | 50.000 | 4.92 | 0.00 | 0.00 | 3.46 |
85 | 87 | 4.823442 | TCTCGTATTTGCCTTCGTCCTATA | 59.177 | 41.667 | 0.00 | 0.00 | 0.00 | 1.31 |
89 | 91 | 2.159282 | TCTCTCGTATTTGCCTTCGTCC | 60.159 | 50.000 | 0.00 | 0.00 | 0.00 | 4.79 |
94 | 96 | 5.023533 | TGCTTATCTCTCGTATTTGCCTT | 57.976 | 39.130 | 0.00 | 0.00 | 0.00 | 4.35 |
111 | 120 | 1.153168 | GGCGCATCCTCCTTGCTTA | 60.153 | 57.895 | 10.83 | 0.00 | 37.96 | 3.09 |
112 | 121 | 2.439156 | GGCGCATCCTCCTTGCTT | 60.439 | 61.111 | 10.83 | 0.00 | 37.96 | 3.91 |
113 | 122 | 3.720601 | TGGCGCATCCTCCTTGCT | 61.721 | 61.111 | 10.83 | 0.00 | 37.96 | 3.91 |
114 | 123 | 3.512516 | GTGGCGCATCCTCCTTGC | 61.513 | 66.667 | 10.83 | 0.00 | 36.74 | 4.01 |
115 | 124 | 3.197790 | CGTGGCGCATCCTCCTTG | 61.198 | 66.667 | 10.83 | 0.00 | 35.26 | 3.61 |
116 | 125 | 3.376935 | CTCGTGGCGCATCCTCCTT | 62.377 | 63.158 | 10.83 | 0.00 | 35.26 | 3.36 |
117 | 126 | 3.842923 | CTCGTGGCGCATCCTCCT | 61.843 | 66.667 | 10.83 | 0.00 | 35.26 | 3.69 |
118 | 127 | 3.157217 | ATCTCGTGGCGCATCCTCC | 62.157 | 63.158 | 10.83 | 0.00 | 35.26 | 4.30 |
119 | 128 | 1.663074 | GATCTCGTGGCGCATCCTC | 60.663 | 63.158 | 10.83 | 0.00 | 35.26 | 3.71 |
120 | 129 | 0.823769 | TAGATCTCGTGGCGCATCCT | 60.824 | 55.000 | 10.83 | 0.00 | 35.26 | 3.24 |
121 | 130 | 0.244994 | ATAGATCTCGTGGCGCATCC | 59.755 | 55.000 | 10.83 | 0.00 | 0.00 | 3.51 |
123 | 132 | 0.037882 | CCATAGATCTCGTGGCGCAT | 60.038 | 55.000 | 10.83 | 0.00 | 0.00 | 4.73 |
124 | 133 | 1.106944 | TCCATAGATCTCGTGGCGCA | 61.107 | 55.000 | 18.03 | 3.45 | 33.01 | 6.09 |
126 | 135 | 0.387878 | GCTCCATAGATCTCGTGGCG | 60.388 | 60.000 | 18.03 | 14.50 | 33.01 | 5.69 |
127 | 136 | 0.965439 | AGCTCCATAGATCTCGTGGC | 59.035 | 55.000 | 18.03 | 10.20 | 33.01 | 5.01 |
128 | 137 | 1.959985 | ACAGCTCCATAGATCTCGTGG | 59.040 | 52.381 | 17.13 | 17.13 | 0.00 | 4.94 |
129 | 138 | 2.620585 | TCACAGCTCCATAGATCTCGTG | 59.379 | 50.000 | 0.00 | 0.00 | 0.00 | 4.35 |
130 | 139 | 2.884012 | CTCACAGCTCCATAGATCTCGT | 59.116 | 50.000 | 0.00 | 0.00 | 0.00 | 4.18 |
131 | 140 | 2.228582 | CCTCACAGCTCCATAGATCTCG | 59.771 | 54.545 | 0.00 | 0.00 | 0.00 | 4.04 |
133 | 142 | 2.964464 | CACCTCACAGCTCCATAGATCT | 59.036 | 50.000 | 0.00 | 0.00 | 0.00 | 2.75 |
135 | 144 | 2.756907 | ACACCTCACAGCTCCATAGAT | 58.243 | 47.619 | 0.00 | 0.00 | 0.00 | 1.98 |
136 | 145 | 2.234661 | CAACACCTCACAGCTCCATAGA | 59.765 | 50.000 | 0.00 | 0.00 | 0.00 | 1.98 |
137 | 146 | 2.625737 | CAACACCTCACAGCTCCATAG | 58.374 | 52.381 | 0.00 | 0.00 | 0.00 | 2.23 |
139 | 148 | 0.037303 | CCAACACCTCACAGCTCCAT | 59.963 | 55.000 | 0.00 | 0.00 | 0.00 | 3.41 |
140 | 149 | 1.344953 | ACCAACACCTCACAGCTCCA | 61.345 | 55.000 | 0.00 | 0.00 | 0.00 | 3.86 |
142 | 151 | 0.394565 | AGACCAACACCTCACAGCTC | 59.605 | 55.000 | 0.00 | 0.00 | 0.00 | 4.09 |
143 | 152 | 0.839946 | AAGACCAACACCTCACAGCT | 59.160 | 50.000 | 0.00 | 0.00 | 0.00 | 4.24 |
144 | 153 | 1.680338 | AAAGACCAACACCTCACAGC | 58.320 | 50.000 | 0.00 | 0.00 | 0.00 | 4.40 |
162 | 171 | 5.928976 | TCTCTCCATGAGTGTTGAGAAAAA | 58.071 | 37.500 | 0.00 | 0.00 | 43.13 | 1.94 |
163 | 172 | 5.305386 | TCTCTCTCCATGAGTGTTGAGAAAA | 59.695 | 40.000 | 0.00 | 0.00 | 43.13 | 2.29 |
164 | 173 | 4.835056 | TCTCTCTCCATGAGTGTTGAGAAA | 59.165 | 41.667 | 0.00 | 0.00 | 43.13 | 2.52 |
165 | 174 | 4.411013 | TCTCTCTCCATGAGTGTTGAGAA | 58.589 | 43.478 | 0.00 | 0.00 | 43.13 | 2.87 |
166 | 175 | 4.039603 | TCTCTCTCCATGAGTGTTGAGA | 57.960 | 45.455 | 0.00 | 0.00 | 43.13 | 3.27 |
167 | 176 | 4.401837 | TCATCTCTCTCCATGAGTGTTGAG | 59.598 | 45.833 | 0.00 | 0.00 | 43.13 | 3.02 |
168 | 177 | 4.347607 | TCATCTCTCTCCATGAGTGTTGA | 58.652 | 43.478 | 0.00 | 0.00 | 43.13 | 3.18 |
169 | 178 | 4.441773 | CCTCATCTCTCTCCATGAGTGTTG | 60.442 | 50.000 | 0.00 | 0.00 | 43.14 | 3.33 |
170 | 179 | 3.705579 | CCTCATCTCTCTCCATGAGTGTT | 59.294 | 47.826 | 0.00 | 0.00 | 43.14 | 3.32 |
171 | 180 | 3.053019 | TCCTCATCTCTCTCCATGAGTGT | 60.053 | 47.826 | 0.00 | 0.00 | 43.14 | 3.55 |
172 | 181 | 3.564264 | TCCTCATCTCTCTCCATGAGTG | 58.436 | 50.000 | 0.00 | 1.31 | 43.14 | 3.51 |
173 | 182 | 3.969466 | TCCTCATCTCTCTCCATGAGT | 57.031 | 47.619 | 0.00 | 0.00 | 43.14 | 3.41 |
174 | 183 | 3.575256 | CCTTCCTCATCTCTCTCCATGAG | 59.425 | 52.174 | 0.00 | 2.48 | 43.94 | 2.90 |
175 | 184 | 3.574749 | CCTTCCTCATCTCTCTCCATGA | 58.425 | 50.000 | 0.00 | 0.00 | 0.00 | 3.07 |
176 | 185 | 2.633967 | CCCTTCCTCATCTCTCTCCATG | 59.366 | 54.545 | 0.00 | 0.00 | 0.00 | 3.66 |
177 | 186 | 2.521841 | TCCCTTCCTCATCTCTCTCCAT | 59.478 | 50.000 | 0.00 | 0.00 | 0.00 | 3.41 |
184 | 193 | 2.159170 | CGTCAAGTCCCTTCCTCATCTC | 60.159 | 54.545 | 0.00 | 0.00 | 0.00 | 2.75 |
201 | 210 | 2.124903 | GCGTGAGAAAAGAAGACGTCA | 58.875 | 47.619 | 19.50 | 0.00 | 32.66 | 4.35 |
209 | 218 | 3.570926 | ACGTATCAGCGTGAGAAAAGA | 57.429 | 42.857 | 0.00 | 0.00 | 43.99 | 2.52 |
220 | 229 | 4.698304 | AGCTTATCTCCTCTACGTATCAGC | 59.302 | 45.833 | 0.00 | 0.00 | 0.00 | 4.26 |
226 | 235 | 1.957877 | GGCAGCTTATCTCCTCTACGT | 59.042 | 52.381 | 0.00 | 0.00 | 0.00 | 3.57 |
227 | 236 | 1.068885 | CGGCAGCTTATCTCCTCTACG | 60.069 | 57.143 | 0.00 | 0.00 | 0.00 | 3.51 |
229 | 238 | 1.133450 | ACCGGCAGCTTATCTCCTCTA | 60.133 | 52.381 | 0.00 | 0.00 | 0.00 | 2.43 |
232 | 241 | 0.978146 | ACACCGGCAGCTTATCTCCT | 60.978 | 55.000 | 0.00 | 0.00 | 0.00 | 3.69 |
233 | 242 | 0.811616 | CACACCGGCAGCTTATCTCC | 60.812 | 60.000 | 0.00 | 0.00 | 0.00 | 3.71 |
234 | 243 | 0.175760 | TCACACCGGCAGCTTATCTC | 59.824 | 55.000 | 0.00 | 0.00 | 0.00 | 2.75 |
235 | 244 | 0.176680 | CTCACACCGGCAGCTTATCT | 59.823 | 55.000 | 0.00 | 0.00 | 0.00 | 1.98 |
236 | 245 | 1.432270 | GCTCACACCGGCAGCTTATC | 61.432 | 60.000 | 0.00 | 0.00 | 0.00 | 1.75 |
237 | 246 | 1.450312 | GCTCACACCGGCAGCTTAT | 60.450 | 57.895 | 0.00 | 0.00 | 0.00 | 1.73 |
238 | 247 | 2.047274 | GCTCACACCGGCAGCTTA | 60.047 | 61.111 | 0.00 | 0.00 | 0.00 | 3.09 |
255 | 264 | 0.441145 | GTAACTAAACCGCTGGCACG | 59.559 | 55.000 | 3.06 | 3.06 | 0.00 | 5.34 |
263 | 272 | 2.160065 | CGCGTTCACTGTAACTAAACCG | 60.160 | 50.000 | 0.00 | 0.00 | 0.00 | 4.44 |
268 | 277 | 1.954437 | CGACGCGTTCACTGTAACTA | 58.046 | 50.000 | 15.53 | 0.00 | 0.00 | 2.24 |
272 | 281 | 2.429571 | GGCGACGCGTTCACTGTA | 60.430 | 61.111 | 15.53 | 0.00 | 0.00 | 2.74 |
291 | 300 | 2.905996 | TTGGCTCGGTGGCTTCCAT | 61.906 | 57.895 | 5.23 | 0.00 | 42.34 | 3.41 |
304 | 313 | 3.241067 | TCTATAAAGCGAACGTTGGCT | 57.759 | 42.857 | 29.12 | 29.12 | 44.37 | 4.75 |
307 | 316 | 7.775729 | ACAAAATTCTATAAAGCGAACGTTG | 57.224 | 32.000 | 5.00 | 0.00 | 0.00 | 4.10 |
397 | 414 | 1.298339 | ACGCGCTGCTTTTGTTCAC | 60.298 | 52.632 | 5.73 | 0.00 | 0.00 | 3.18 |
401 | 418 | 4.629115 | GCCACGCGCTGCTTTTGT | 62.629 | 61.111 | 5.73 | 0.00 | 0.00 | 2.83 |
494 | 512 | 0.546122 | TGGACTGGTGCTGTGACTTT | 59.454 | 50.000 | 0.00 | 0.00 | 0.00 | 2.66 |
1368 | 1419 | 2.045926 | GGTTCTCACCTGCGCCAT | 60.046 | 61.111 | 4.18 | 0.00 | 40.44 | 4.40 |
1434 | 1486 | 2.584608 | CCGGAACCCTAGCACTGG | 59.415 | 66.667 | 0.00 | 0.00 | 0.00 | 4.00 |
1526 | 1578 | 1.845809 | GCAACCGAGTTCAGCACCTG | 61.846 | 60.000 | 0.00 | 0.00 | 0.00 | 4.00 |
1597 | 1649 | 5.313712 | TCCACTACTCAATTTCCAGTTTCC | 58.686 | 41.667 | 0.00 | 0.00 | 0.00 | 3.13 |
1599 | 1651 | 6.542821 | TCATCCACTACTCAATTTCCAGTTT | 58.457 | 36.000 | 0.00 | 0.00 | 0.00 | 2.66 |
1632 | 1684 | 1.548719 | TCTACCACGATGACACTTGGG | 59.451 | 52.381 | 0.00 | 0.00 | 34.19 | 4.12 |
1639 | 1691 | 4.800993 | CAGATTCAGTTCTACCACGATGAC | 59.199 | 45.833 | 0.00 | 0.00 | 0.00 | 3.06 |
1648 | 1703 | 8.934507 | ACTGTAATTAGCAGATTCAGTTCTAC | 57.065 | 34.615 | 16.84 | 0.00 | 37.40 | 2.59 |
1683 | 1757 | 6.202954 | AGACCGTAATTAGCAGATTGTAATGC | 59.797 | 38.462 | 0.00 | 0.00 | 42.87 | 3.56 |
1684 | 1758 | 7.715265 | AGACCGTAATTAGCAGATTGTAATG | 57.285 | 36.000 | 0.00 | 0.00 | 0.00 | 1.90 |
1688 | 1762 | 7.291411 | AGATAGACCGTAATTAGCAGATTGT | 57.709 | 36.000 | 0.00 | 0.00 | 0.00 | 2.71 |
1689 | 1763 | 8.297426 | TGTAGATAGACCGTAATTAGCAGATTG | 58.703 | 37.037 | 0.00 | 0.00 | 0.00 | 2.67 |
1690 | 1764 | 8.405418 | TGTAGATAGACCGTAATTAGCAGATT | 57.595 | 34.615 | 0.00 | 0.00 | 0.00 | 2.40 |
1691 | 1765 | 7.666388 | ACTGTAGATAGACCGTAATTAGCAGAT | 59.334 | 37.037 | 0.00 | 0.00 | 0.00 | 2.90 |
1692 | 1766 | 6.996879 | ACTGTAGATAGACCGTAATTAGCAGA | 59.003 | 38.462 | 0.00 | 0.00 | 0.00 | 4.26 |
1693 | 1767 | 7.204496 | ACTGTAGATAGACCGTAATTAGCAG | 57.796 | 40.000 | 0.00 | 0.00 | 0.00 | 4.24 |
1694 | 1768 | 8.859236 | ATACTGTAGATAGACCGTAATTAGCA | 57.141 | 34.615 | 0.00 | 0.00 | 0.00 | 3.49 |
1700 | 1774 | 9.618890 | AGTTGTAATACTGTAGATAGACCGTAA | 57.381 | 33.333 | 0.00 | 0.00 | 0.00 | 3.18 |
1701 | 1775 | 9.265901 | GAGTTGTAATACTGTAGATAGACCGTA | 57.734 | 37.037 | 0.00 | 0.00 | 0.00 | 4.02 |
1702 | 1776 | 7.992033 | AGAGTTGTAATACTGTAGATAGACCGT | 59.008 | 37.037 | 0.00 | 0.00 | 0.00 | 4.83 |
1703 | 1777 | 8.283992 | CAGAGTTGTAATACTGTAGATAGACCG | 58.716 | 40.741 | 0.00 | 0.00 | 0.00 | 4.79 |
1704 | 1778 | 8.077386 | GCAGAGTTGTAATACTGTAGATAGACC | 58.923 | 40.741 | 0.00 | 0.00 | 33.57 | 3.85 |
1705 | 1779 | 8.622157 | TGCAGAGTTGTAATACTGTAGATAGAC | 58.378 | 37.037 | 0.00 | 0.00 | 33.57 | 2.59 |
1706 | 1780 | 8.747538 | TGCAGAGTTGTAATACTGTAGATAGA | 57.252 | 34.615 | 0.00 | 0.00 | 33.57 | 1.98 |
1707 | 1781 | 9.239002 | GTTGCAGAGTTGTAATACTGTAGATAG | 57.761 | 37.037 | 0.00 | 0.00 | 31.49 | 2.08 |
1708 | 1782 | 8.967918 | AGTTGCAGAGTTGTAATACTGTAGATA | 58.032 | 33.333 | 0.00 | 0.00 | 31.49 | 1.98 |
1709 | 1783 | 7.841956 | AGTTGCAGAGTTGTAATACTGTAGAT | 58.158 | 34.615 | 0.00 | 0.00 | 31.49 | 1.98 |
1710 | 1784 | 7.176865 | AGAGTTGCAGAGTTGTAATACTGTAGA | 59.823 | 37.037 | 0.00 | 0.00 | 31.49 | 2.59 |
1711 | 1785 | 7.274468 | CAGAGTTGCAGAGTTGTAATACTGTAG | 59.726 | 40.741 | 0.00 | 0.00 | 34.21 | 2.74 |
1712 | 1786 | 7.090808 | CAGAGTTGCAGAGTTGTAATACTGTA | 58.909 | 38.462 | 0.00 | 0.00 | 34.21 | 2.74 |
1713 | 1787 | 5.928839 | CAGAGTTGCAGAGTTGTAATACTGT | 59.071 | 40.000 | 0.00 | 0.00 | 34.21 | 3.55 |
1714 | 1788 | 6.400579 | CAGAGTTGCAGAGTTGTAATACTG | 57.599 | 41.667 | 0.00 | 0.00 | 33.21 | 2.74 |
1801 | 1875 | 5.874810 | CAGCCATGTAAGCACTTACTCTAAA | 59.125 | 40.000 | 18.60 | 1.94 | 44.21 | 1.85 |
1810 | 1884 | 2.795231 | ATGACAGCCATGTAAGCACT | 57.205 | 45.000 | 0.00 | 0.00 | 40.68 | 4.40 |
1823 | 1897 | 5.064452 | GTGATCCAGCACTTTTCTATGACAG | 59.936 | 44.000 | 0.00 | 0.00 | 35.91 | 3.51 |
1867 | 1942 | 9.924650 | GATTTACTCTAAGGAACTGAACAAGTA | 57.075 | 33.333 | 0.00 | 0.00 | 40.86 | 2.24 |
2008 | 2083 | 4.825634 | ACTGAGCATGATATCACCCAAATG | 59.174 | 41.667 | 7.78 | 2.37 | 0.00 | 2.32 |
2013 | 2088 | 3.307059 | GGGTACTGAGCATGATATCACCC | 60.307 | 52.174 | 7.78 | 7.01 | 0.00 | 4.61 |
2047 | 2126 | 5.010516 | AGCAGCTGAAAGAGACGATATGTAT | 59.989 | 40.000 | 20.43 | 0.00 | 34.07 | 2.29 |
2226 | 2308 | 5.865013 | CAGAAACACAAATAATGCATGCTCA | 59.135 | 36.000 | 20.33 | 0.00 | 0.00 | 4.26 |
2287 | 2369 | 3.125316 | TGTTCAGAAAAGCAATGCAAGC | 58.875 | 40.909 | 8.35 | 6.40 | 0.00 | 4.01 |
2391 | 2483 | 7.703298 | AATCACACAACACAAATTCATCAAG | 57.297 | 32.000 | 0.00 | 0.00 | 0.00 | 3.02 |
2410 | 2502 | 2.813172 | CCACAAATTTGGGCCAAATCAC | 59.187 | 45.455 | 37.21 | 0.00 | 42.32 | 3.06 |
2455 | 2547 | 4.682787 | TGAAGCATACTACTTCCATCACG | 58.317 | 43.478 | 0.00 | 0.00 | 42.35 | 4.35 |
2463 | 2555 | 7.040478 | TCACAGCAAAAATGAAGCATACTACTT | 60.040 | 33.333 | 0.00 | 0.00 | 0.00 | 2.24 |
2497 | 2589 | 5.595133 | ACTAGTTTACTGGGCTCTCTGTATC | 59.405 | 44.000 | 0.00 | 0.00 | 0.00 | 2.24 |
2554 | 2646 | 2.774234 | CAGGGTTCAGGTATCAGGACAT | 59.226 | 50.000 | 0.00 | 0.00 | 0.00 | 3.06 |
2674 | 2766 | 8.191446 | TCAAACTATAGTTCATAGACAGAGCAC | 58.809 | 37.037 | 18.28 | 0.00 | 39.29 | 4.40 |
2689 | 2781 | 5.938125 | ACAATGAAGCCGTTCAAACTATAGT | 59.062 | 36.000 | 0.00 | 0.00 | 45.88 | 2.12 |
2703 | 2797 | 1.337167 | GCCTGAAACCACAATGAAGCC | 60.337 | 52.381 | 0.00 | 0.00 | 0.00 | 4.35 |
2967 | 3061 | 3.524095 | TGGAATTTCTCCTGGCTTTCA | 57.476 | 42.857 | 0.00 | 0.00 | 45.64 | 2.69 |
3030 | 3124 | 3.214328 | GGTAGCGATTTCATGTGGGATT | 58.786 | 45.455 | 0.00 | 0.00 | 0.00 | 3.01 |
3150 | 3244 | 2.604912 | TGAGCTTCACTAGGACCTGA | 57.395 | 50.000 | 3.53 | 0.00 | 0.00 | 3.86 |
3418 | 3519 | 5.872617 | CGACACTCTGGGTATTGAAAACATA | 59.127 | 40.000 | 0.00 | 0.00 | 0.00 | 2.29 |
3434 | 3535 | 0.251209 | TACAGGACAGGCGACACTCT | 60.251 | 55.000 | 0.00 | 0.00 | 0.00 | 3.24 |
3475 | 3577 | 3.244215 | CGATACATAGCCATCCTTGGTGT | 60.244 | 47.826 | 0.00 | 0.00 | 45.57 | 4.16 |
3478 | 3580 | 3.961480 | TCGATACATAGCCATCCTTGG | 57.039 | 47.619 | 0.00 | 0.00 | 46.66 | 3.61 |
3480 | 3582 | 4.382470 | GCTGATCGATACATAGCCATCCTT | 60.382 | 45.833 | 0.00 | 0.00 | 0.00 | 3.36 |
3630 | 3732 | 3.059120 | GTCATCAATCAGGCATGTCATCG | 60.059 | 47.826 | 0.00 | 0.00 | 0.00 | 3.84 |
3647 | 3749 | 5.746307 | TGAATAGCATTTGCAGAGTCATC | 57.254 | 39.130 | 5.20 | 0.00 | 45.16 | 2.92 |
3648 | 3750 | 5.651139 | AGTTGAATAGCATTTGCAGAGTCAT | 59.349 | 36.000 | 5.20 | 0.00 | 45.16 | 3.06 |
3649 | 3751 | 5.005740 | AGTTGAATAGCATTTGCAGAGTCA | 58.994 | 37.500 | 5.20 | 4.64 | 45.16 | 3.41 |
3650 | 3752 | 5.557891 | AGTTGAATAGCATTTGCAGAGTC | 57.442 | 39.130 | 5.20 | 2.10 | 45.16 | 3.36 |
3651 | 3753 | 6.176183 | AGTAGTTGAATAGCATTTGCAGAGT | 58.824 | 36.000 | 5.20 | 0.00 | 45.16 | 3.24 |
3652 | 3754 | 6.238320 | GGAGTAGTTGAATAGCATTTGCAGAG | 60.238 | 42.308 | 5.20 | 0.00 | 45.16 | 3.35 |
3655 | 3757 | 5.123820 | GTGGAGTAGTTGAATAGCATTTGCA | 59.876 | 40.000 | 5.20 | 0.00 | 45.16 | 4.08 |
3656 | 3758 | 5.355350 | AGTGGAGTAGTTGAATAGCATTTGC | 59.645 | 40.000 | 0.00 | 0.00 | 42.49 | 3.68 |
3657 | 3759 | 6.992063 | AGTGGAGTAGTTGAATAGCATTTG | 57.008 | 37.500 | 0.00 | 0.00 | 0.00 | 2.32 |
3658 | 3760 | 7.168219 | TGAAGTGGAGTAGTTGAATAGCATTT | 58.832 | 34.615 | 0.00 | 0.00 | 0.00 | 2.32 |
3659 | 3761 | 6.711277 | TGAAGTGGAGTAGTTGAATAGCATT | 58.289 | 36.000 | 0.00 | 0.00 | 0.00 | 3.56 |
3660 | 3762 | 6.299805 | TGAAGTGGAGTAGTTGAATAGCAT | 57.700 | 37.500 | 0.00 | 0.00 | 0.00 | 3.79 |
3661 | 3763 | 5.738619 | TGAAGTGGAGTAGTTGAATAGCA | 57.261 | 39.130 | 0.00 | 0.00 | 0.00 | 3.49 |
3662 | 3764 | 5.007136 | GCATGAAGTGGAGTAGTTGAATAGC | 59.993 | 44.000 | 0.00 | 0.00 | 0.00 | 2.97 |
3663 | 3765 | 6.257411 | CAGCATGAAGTGGAGTAGTTGAATAG | 59.743 | 42.308 | 0.00 | 0.00 | 39.69 | 1.73 |
3664 | 3766 | 6.108687 | CAGCATGAAGTGGAGTAGTTGAATA | 58.891 | 40.000 | 0.00 | 0.00 | 39.69 | 1.75 |
3665 | 3767 | 4.940046 | CAGCATGAAGTGGAGTAGTTGAAT | 59.060 | 41.667 | 0.00 | 0.00 | 39.69 | 2.57 |
3666 | 3768 | 4.202357 | ACAGCATGAAGTGGAGTAGTTGAA | 60.202 | 41.667 | 0.00 | 0.00 | 39.69 | 2.69 |
3667 | 3769 | 3.324846 | ACAGCATGAAGTGGAGTAGTTGA | 59.675 | 43.478 | 0.00 | 0.00 | 39.69 | 3.18 |
3668 | 3770 | 3.668447 | ACAGCATGAAGTGGAGTAGTTG | 58.332 | 45.455 | 0.00 | 0.00 | 39.69 | 3.16 |
3669 | 3771 | 3.307059 | GGACAGCATGAAGTGGAGTAGTT | 60.307 | 47.826 | 0.00 | 0.00 | 39.69 | 2.24 |
3670 | 3772 | 2.234908 | GGACAGCATGAAGTGGAGTAGT | 59.765 | 50.000 | 0.00 | 0.00 | 39.69 | 2.73 |
3671 | 3773 | 2.234661 | TGGACAGCATGAAGTGGAGTAG | 59.765 | 50.000 | 0.00 | 0.00 | 39.69 | 2.57 |
3672 | 3774 | 2.256306 | TGGACAGCATGAAGTGGAGTA | 58.744 | 47.619 | 0.00 | 0.00 | 39.69 | 2.59 |
3673 | 3775 | 1.059098 | TGGACAGCATGAAGTGGAGT | 58.941 | 50.000 | 0.00 | 0.00 | 39.69 | 3.85 |
3674 | 3776 | 2.189594 | TTGGACAGCATGAAGTGGAG | 57.810 | 50.000 | 0.00 | 0.00 | 39.69 | 3.86 |
3675 | 3777 | 2.229792 | GTTTGGACAGCATGAAGTGGA | 58.770 | 47.619 | 0.00 | 0.00 | 39.69 | 4.02 |
3676 | 3778 | 1.955778 | TGTTTGGACAGCATGAAGTGG | 59.044 | 47.619 | 0.00 | 0.00 | 39.69 | 4.00 |
3677 | 3779 | 3.635331 | CTTGTTTGGACAGCATGAAGTG | 58.365 | 45.455 | 0.00 | 0.00 | 39.69 | 3.16 |
3678 | 3780 | 2.035066 | GCTTGTTTGGACAGCATGAAGT | 59.965 | 45.455 | 0.00 | 0.00 | 39.69 | 3.01 |
3679 | 3781 | 2.034939 | TGCTTGTTTGGACAGCATGAAG | 59.965 | 45.455 | 0.00 | 0.00 | 39.69 | 3.02 |
3680 | 3782 | 2.030371 | TGCTTGTTTGGACAGCATGAA | 58.970 | 42.857 | 0.00 | 0.00 | 39.69 | 2.57 |
3681 | 3783 | 1.610038 | CTGCTTGTTTGGACAGCATGA | 59.390 | 47.619 | 0.00 | 0.00 | 39.69 | 3.07 |
3682 | 3784 | 2.060326 | CTGCTTGTTTGGACAGCATG | 57.940 | 50.000 | 0.00 | 0.00 | 46.00 | 4.06 |
3686 | 3788 | 2.806608 | ATTGCTGCTTGTTTGGACAG | 57.193 | 45.000 | 0.00 | 0.00 | 37.04 | 3.51 |
3687 | 3789 | 3.540314 | AAATTGCTGCTTGTTTGGACA | 57.460 | 38.095 | 0.00 | 0.00 | 0.00 | 4.02 |
3688 | 3790 | 4.808364 | TGTAAAATTGCTGCTTGTTTGGAC | 59.192 | 37.500 | 0.00 | 3.18 | 0.00 | 4.02 |
3689 | 3791 | 5.016051 | TGTAAAATTGCTGCTTGTTTGGA | 57.984 | 34.783 | 0.00 | 0.00 | 0.00 | 3.53 |
3690 | 3792 | 5.927954 | ATGTAAAATTGCTGCTTGTTTGG | 57.072 | 34.783 | 0.00 | 0.00 | 0.00 | 3.28 |
3733 | 3835 | 8.766151 | GGCAAGTAGAAGCTGTAAATAATAGAC | 58.234 | 37.037 | 0.00 | 0.00 | 0.00 | 2.59 |
3738 | 3840 | 4.331717 | GCGGCAAGTAGAAGCTGTAAATAA | 59.668 | 41.667 | 0.00 | 0.00 | 39.31 | 1.40 |
3747 | 3854 | 1.086696 | TCAATGCGGCAAGTAGAAGC | 58.913 | 50.000 | 6.82 | 0.00 | 0.00 | 3.86 |
3760 | 3868 | 3.365832 | CTGAGTGTGTTTGTGTCAATGC | 58.634 | 45.455 | 0.00 | 0.00 | 0.00 | 3.56 |
3763 | 3871 | 3.270027 | CTCCTGAGTGTGTTTGTGTCAA | 58.730 | 45.455 | 0.00 | 0.00 | 0.00 | 3.18 |
3765 | 3873 | 1.599542 | GCTCCTGAGTGTGTTTGTGTC | 59.400 | 52.381 | 0.00 | 0.00 | 0.00 | 3.67 |
3767 | 3875 | 1.600957 | CTGCTCCTGAGTGTGTTTGTG | 59.399 | 52.381 | 0.00 | 0.00 | 0.00 | 3.33 |
3769 | 3877 | 1.233019 | CCTGCTCCTGAGTGTGTTTG | 58.767 | 55.000 | 0.00 | 0.00 | 0.00 | 2.93 |
3770 | 3878 | 0.536006 | GCCTGCTCCTGAGTGTGTTT | 60.536 | 55.000 | 0.00 | 0.00 | 0.00 | 2.83 |
3772 | 3880 | 2.142761 | TGCCTGCTCCTGAGTGTGT | 61.143 | 57.895 | 0.00 | 0.00 | 0.00 | 3.72 |
3773 | 3881 | 1.670406 | GTGCCTGCTCCTGAGTGTG | 60.670 | 63.158 | 0.00 | 0.00 | 0.00 | 3.82 |
3775 | 3883 | 1.375652 | CTGTGCCTGCTCCTGAGTG | 60.376 | 63.158 | 0.00 | 0.00 | 0.00 | 3.51 |
3781 | 3889 | 3.360340 | GTGCACTGTGCCTGCTCC | 61.360 | 66.667 | 28.17 | 7.04 | 44.23 | 4.70 |
3788 | 3896 | 5.755375 | ACATACTTAGATATGTGCACTGTGC | 59.245 | 40.000 | 25.15 | 25.15 | 42.84 | 4.57 |
3797 | 3905 | 4.594920 | AGGGCAGCACATACTTAGATATGT | 59.405 | 41.667 | 0.00 | 0.00 | 44.84 | 2.29 |
3798 | 3906 | 5.046735 | AGAGGGCAGCACATACTTAGATATG | 60.047 | 44.000 | 0.00 | 0.00 | 38.34 | 1.78 |
3799 | 3907 | 5.090139 | AGAGGGCAGCACATACTTAGATAT | 58.910 | 41.667 | 0.00 | 0.00 | 0.00 | 1.63 |
3800 | 3908 | 4.483950 | AGAGGGCAGCACATACTTAGATA | 58.516 | 43.478 | 0.00 | 0.00 | 0.00 | 1.98 |
3801 | 3909 | 3.312890 | AGAGGGCAGCACATACTTAGAT | 58.687 | 45.455 | 0.00 | 0.00 | 0.00 | 1.98 |
3802 | 3910 | 2.752030 | AGAGGGCAGCACATACTTAGA | 58.248 | 47.619 | 0.00 | 0.00 | 0.00 | 2.10 |
3803 | 3911 | 4.562347 | CCATAGAGGGCAGCACATACTTAG | 60.562 | 50.000 | 0.00 | 0.00 | 0.00 | 2.18 |
3804 | 3912 | 3.324846 | CCATAGAGGGCAGCACATACTTA | 59.675 | 47.826 | 0.00 | 0.00 | 0.00 | 2.24 |
3805 | 3913 | 2.105477 | CCATAGAGGGCAGCACATACTT | 59.895 | 50.000 | 0.00 | 0.00 | 0.00 | 2.24 |
3806 | 3914 | 1.696336 | CCATAGAGGGCAGCACATACT | 59.304 | 52.381 | 0.00 | 0.00 | 0.00 | 2.12 |
3807 | 3915 | 1.417890 | ACCATAGAGGGCAGCACATAC | 59.582 | 52.381 | 0.00 | 0.00 | 43.89 | 2.39 |
3808 | 3916 | 1.806496 | ACCATAGAGGGCAGCACATA | 58.194 | 50.000 | 0.00 | 0.00 | 43.89 | 2.29 |
3809 | 3917 | 1.417890 | GTACCATAGAGGGCAGCACAT | 59.582 | 52.381 | 0.00 | 0.00 | 43.89 | 3.21 |
3810 | 3918 | 0.830648 | GTACCATAGAGGGCAGCACA | 59.169 | 55.000 | 0.00 | 0.00 | 43.89 | 4.57 |
3811 | 3919 | 1.123928 | AGTACCATAGAGGGCAGCAC | 58.876 | 55.000 | 0.00 | 0.00 | 43.89 | 4.40 |
3812 | 3920 | 1.123077 | CAGTACCATAGAGGGCAGCA | 58.877 | 55.000 | 0.00 | 0.00 | 43.89 | 4.41 |
3813 | 3921 | 1.069358 | GACAGTACCATAGAGGGCAGC | 59.931 | 57.143 | 0.00 | 0.00 | 43.89 | 5.25 |
3814 | 3922 | 2.101582 | GTGACAGTACCATAGAGGGCAG | 59.898 | 54.545 | 0.00 | 0.00 | 43.89 | 4.85 |
3833 | 3941 | 4.699735 | TCACTTGCATTATTGTGTAGGGTG | 59.300 | 41.667 | 0.00 | 0.00 | 0.00 | 4.61 |
3842 | 3950 | 4.239304 | TGCTTTGCTCACTTGCATTATTG | 58.761 | 39.130 | 0.00 | 0.00 | 42.96 | 1.90 |
3846 | 3956 | 1.958579 | TCTGCTTTGCTCACTTGCATT | 59.041 | 42.857 | 0.00 | 0.00 | 42.96 | 3.56 |
3847 | 3957 | 1.268899 | GTCTGCTTTGCTCACTTGCAT | 59.731 | 47.619 | 0.00 | 0.00 | 42.96 | 3.96 |
3848 | 3958 | 0.664761 | GTCTGCTTTGCTCACTTGCA | 59.335 | 50.000 | 0.00 | 0.00 | 41.65 | 4.08 |
3849 | 3959 | 0.039708 | GGTCTGCTTTGCTCACTTGC | 60.040 | 55.000 | 0.00 | 0.00 | 0.00 | 4.01 |
3850 | 3960 | 1.002033 | GTGGTCTGCTTTGCTCACTTG | 60.002 | 52.381 | 0.00 | 0.00 | 0.00 | 3.16 |
3851 | 3961 | 1.312815 | GTGGTCTGCTTTGCTCACTT | 58.687 | 50.000 | 0.00 | 0.00 | 0.00 | 3.16 |
3853 | 3963 | 1.518903 | GGGTGGTCTGCTTTGCTCAC | 61.519 | 60.000 | 0.00 | 0.00 | 0.00 | 3.51 |
3854 | 3964 | 1.228245 | GGGTGGTCTGCTTTGCTCA | 60.228 | 57.895 | 0.00 | 0.00 | 0.00 | 4.26 |
3857 | 3968 | 1.973812 | GGAGGGTGGTCTGCTTTGC | 60.974 | 63.158 | 0.00 | 0.00 | 0.00 | 3.68 |
4039 | 4151 | 1.169577 | TCAACGAGAGAGAGCTGACC | 58.830 | 55.000 | 0.00 | 0.00 | 0.00 | 4.02 |
4210 | 4322 | 2.559440 | GAGCTGTATGAAGCAGGGAAG | 58.441 | 52.381 | 0.00 | 0.00 | 46.08 | 3.46 |
4262 | 4378 | 8.956426 | CCTGACTTTATGCCAGTAAAAAGATTA | 58.044 | 33.333 | 0.00 | 0.00 | 33.98 | 1.75 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.