Multiple sequence alignment - TraesCS2D01G563500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G563500 chr2D 100.000 2231 0 0 1 2231 634722354 634720124 0.000000e+00 4120.0
1 TraesCS2D01G563500 chr2D 84.000 275 25 14 1879 2139 34269514 34269245 1.710000e-61 246.0
2 TraesCS2D01G563500 chr6B 93.810 1777 101 6 94 1865 716546727 716548499 0.000000e+00 2663.0
3 TraesCS2D01G563500 chr6B 90.576 764 50 10 104 850 716543038 716543796 0.000000e+00 992.0
4 TraesCS2D01G563500 chr6B 89.655 290 23 2 1543 1825 716542973 716542684 1.630000e-96 363.0
5 TraesCS2D01G563500 chrUn 90.106 1799 142 19 94 1865 81402251 81400462 0.000000e+00 2303.0
6 TraesCS2D01G563500 chrUn 89.933 1798 148 16 94 1865 81408045 81406255 0.000000e+00 2287.0
7 TraesCS2D01G563500 chrUn 89.621 1792 153 18 94 1865 81414181 81412403 0.000000e+00 2248.0
8 TraesCS2D01G563500 chrUn 87.839 1809 156 17 94 1865 74890282 74892063 0.000000e+00 2063.0
9 TraesCS2D01G563500 chrUn 88.974 1696 150 21 94 1761 75038844 75040530 0.000000e+00 2061.0
10 TraesCS2D01G563500 chrUn 89.894 1603 127 18 227 1813 387084699 387083116 0.000000e+00 2030.0
11 TraesCS2D01G563500 chrUn 89.644 1545 123 18 90 1601 62769113 62767573 0.000000e+00 1932.0
12 TraesCS2D01G563500 chrUn 89.604 1539 128 21 87 1604 62835979 62834452 0.000000e+00 1927.0
13 TraesCS2D01G563500 chrUn 88.519 1533 142 18 90 1601 62772746 62771227 0.000000e+00 1825.0
14 TraesCS2D01G563500 chrUn 91.802 1232 90 10 635 1865 408603503 408604724 0.000000e+00 1705.0
15 TraesCS2D01G563500 chrUn 87.042 1528 124 22 94 1601 62765487 62764014 0.000000e+00 1657.0
16 TraesCS2D01G563500 chrUn 91.701 241 17 3 1535 1774 81369907 81370145 4.590000e-87 331.0
17 TraesCS2D01G563500 chrUn 87.500 280 29 4 1592 1865 75011488 75011767 3.580000e-83 318.0
18 TraesCS2D01G563500 chrUn 84.483 174 19 5 1874 2040 335003802 335003630 4.930000e-37 165.0
19 TraesCS2D01G563500 chrUn 91.667 108 5 4 1758 1865 74917972 74918075 1.790000e-31 147.0
20 TraesCS2D01G563500 chrUn 94.340 53 3 0 1 53 81364358 81364306 5.110000e-12 82.4
21 TraesCS2D01G563500 chrUn 94.340 53 3 0 1 53 81375529 81375477 5.110000e-12 82.4
22 TraesCS2D01G563500 chrUn 94.340 53 3 0 1 53 81380731 81380679 5.110000e-12 82.4
23 TraesCS2D01G563500 chrUn 94.340 53 3 0 1 53 81396427 81396375 5.110000e-12 82.4
24 TraesCS2D01G563500 chrUn 94.340 53 3 0 1 53 81408067 81408015 5.110000e-12 82.4
25 TraesCS2D01G563500 chrUn 94.340 53 3 0 1 53 81414203 81414151 5.110000e-12 82.4
26 TraesCS2D01G563500 chrUn 75.862 174 28 10 1880 2042 56169819 56169989 2.380000e-10 76.8
27 TraesCS2D01G563500 chr6D 89.286 1792 157 17 94 1865 471707352 471709128 0.000000e+00 2213.0
28 TraesCS2D01G563500 chr6D 89.542 1769 138 24 94 1836 471823290 471825037 0.000000e+00 2198.0
29 TraesCS2D01G563500 chr6D 80.952 294 34 9 1878 2155 376104758 376104471 1.740000e-51 213.0
30 TraesCS2D01G563500 chr6D 82.609 253 26 6 1880 2118 318396067 318396315 8.070000e-50 207.0
31 TraesCS2D01G563500 chr6D 79.872 313 35 11 1875 2174 215685481 215685184 1.040000e-48 204.0
32 TraesCS2D01G563500 chr6D 80.791 177 26 6 1881 2049 39066861 39066685 5.000000e-27 132.0
33 TraesCS2D01G563500 chr6D 98.000 50 1 0 1 50 471823268 471823317 1.100000e-13 87.9
34 TraesCS2D01G563500 chr6A 88.790 1793 154 21 94 1865 617933062 617931296 0.000000e+00 2154.0
35 TraesCS2D01G563500 chr6A 87.811 763 70 11 94 838 617817147 617816390 0.000000e+00 872.0
36 TraesCS2D01G563500 chr6A 80.546 293 35 10 1878 2154 12264738 12265024 2.900000e-49 206.0
37 TraesCS2D01G563500 chr6A 96.226 53 2 0 1 53 617929377 617929325 1.100000e-13 87.9
38 TraesCS2D01G563500 chr6A 96.226 53 2 0 1 53 617933084 617933032 1.100000e-13 87.9
39 TraesCS2D01G563500 chr7B 90.335 1521 117 13 107 1601 747628353 747626837 0.000000e+00 1967.0
40 TraesCS2D01G563500 chr7B 79.697 330 42 8 1880 2192 606395449 606395128 4.830000e-52 215.0
41 TraesCS2D01G563500 chr7B 79.538 303 38 14 1880 2165 334976027 334975732 6.290000e-46 195.0
42 TraesCS2D01G563500 chr3A 89.807 363 21 4 1881 2231 618457613 618457971 3.380000e-123 451.0
43 TraesCS2D01G563500 chr3A 89.807 363 21 3 1881 2231 618583417 618583775 3.380000e-123 451.0
44 TraesCS2D01G563500 chr3A 94.545 55 3 0 48 102 1760637 1760691 3.950000e-13 86.1
45 TraesCS2D01G563500 chr7D 89.916 357 14 8 1880 2224 503803264 503802918 7.310000e-120 440.0
46 TraesCS2D01G563500 chr7D 84.173 278 23 9 1880 2141 167556365 167556093 1.320000e-62 250.0
47 TraesCS2D01G563500 chr3B 85.908 369 29 10 1882 2231 241936481 241936845 2.710000e-99 372.0
48 TraesCS2D01G563500 chr3B 82.333 300 30 9 1873 2155 557616016 557615723 2.860000e-59 239.0
49 TraesCS2D01G563500 chr3B 98.305 59 1 0 44 102 4522851 4522793 1.090000e-18 104.0
50 TraesCS2D01G563500 chr3B 98.214 56 1 0 51 106 67381249 67381194 5.070000e-17 99.0
51 TraesCS2D01G563500 chr4D 84.561 285 26 6 1880 2149 96954605 96954324 1.310000e-67 267.0
52 TraesCS2D01G563500 chr4D 81.786 280 29 9 1880 2144 15221500 15221228 4.830000e-52 215.0
53 TraesCS2D01G563500 chr4D 80.479 292 37 10 1880 2154 508744753 508745041 2.900000e-49 206.0
54 TraesCS2D01G563500 chr4D 80.479 292 36 7 1872 2147 128042674 128042388 1.040000e-48 204.0
55 TraesCS2D01G563500 chr4D 82.573 241 23 11 1880 2102 15220114 15220353 6.290000e-46 195.0
56 TraesCS2D01G563500 chr4D 80.165 242 28 11 1878 2105 96953390 96953625 1.770000e-36 163.0
57 TraesCS2D01G563500 chr4D 80.447 179 25 6 1879 2048 353438749 353438572 6.470000e-26 128.0
58 TraesCS2D01G563500 chr4D 86.607 112 12 3 1873 1982 103128405 103128515 1.080000e-23 121.0
59 TraesCS2D01G563500 chr4D 83.673 98 15 1 1880 1976 353437317 353437414 8.480000e-15 91.6
60 TraesCS2D01G563500 chr4D 84.211 95 9 5 1873 1964 37445402 37445493 1.100000e-13 87.9
61 TraesCS2D01G563500 chr2A 84.211 285 27 6 1880 2149 524485525 524485806 6.110000e-66 261.0
62 TraesCS2D01G563500 chr5D 79.947 374 48 14 1881 2231 424795505 424795874 1.320000e-62 250.0
63 TraesCS2D01G563500 chr5D 80.120 332 42 18 1878 2192 451690076 451689752 2.230000e-55 226.0
64 TraesCS2D01G563500 chr5D 81.481 270 26 12 1880 2133 361143862 361144123 1.350000e-47 200.0
65 TraesCS2D01G563500 chr5D 77.889 199 34 7 1860 2048 365690211 365690013 5.030000e-22 115.0
66 TraesCS2D01G563500 chr4B 82.534 292 29 7 1880 2155 604702138 604702423 1.030000e-58 237.0
67 TraesCS2D01G563500 chr5B 82.060 301 31 10 1880 2164 672206525 672206232 3.700000e-58 235.0
68 TraesCS2D01G563500 chr3D 78.049 369 54 15 1880 2229 202475997 202476357 8.070000e-50 207.0
69 TraesCS2D01G563500 chr3D 82.941 170 22 2 1880 2042 20354387 20354218 1.790000e-31 147.0
70 TraesCS2D01G563500 chr3D 100.000 52 0 0 51 102 2293609 2293558 1.820000e-16 97.1
71 TraesCS2D01G563500 chr7A 80.935 278 34 7 1879 2141 621792753 621793026 3.760000e-48 202.0
72 TraesCS2D01G563500 chr7A 97.959 49 1 0 49 97 507418424 507418472 3.950000e-13 86.1
73 TraesCS2D01G563500 chr1A 82.143 252 28 7 1880 2118 139836045 139836292 1.350000e-47 200.0
74 TraesCS2D01G563500 chr1D 78.125 224 25 11 1943 2147 415652741 415652523 1.080000e-23 121.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G563500 chr2D 634720124 634722354 2230 True 4120.000000 4120 100.000000 1 2231 1 chr2D.!!$R2 2230
1 TraesCS2D01G563500 chr6B 716543038 716548499 5461 False 1827.500000 2663 92.193000 94 1865 2 chr6B.!!$F1 1771
2 TraesCS2D01G563500 chrUn 81400462 81402251 1789 True 2303.000000 2303 90.106000 94 1865 1 chrUn.!!$R6 1771
3 TraesCS2D01G563500 chrUn 74890282 74892063 1781 False 2063.000000 2063 87.839000 94 1865 1 chrUn.!!$F2 1771
4 TraesCS2D01G563500 chrUn 75038844 75040530 1686 False 2061.000000 2061 88.974000 94 1761 1 chrUn.!!$F5 1667
5 TraesCS2D01G563500 chrUn 387083116 387084699 1583 True 2030.000000 2030 89.894000 227 1813 1 chrUn.!!$R8 1586
6 TraesCS2D01G563500 chrUn 62834452 62835979 1527 True 1927.000000 1927 89.604000 87 1604 1 chrUn.!!$R1 1517
7 TraesCS2D01G563500 chrUn 62764014 62772746 8732 True 1804.666667 1932 88.401667 90 1601 3 chrUn.!!$R9 1511
8 TraesCS2D01G563500 chrUn 408603503 408604724 1221 False 1705.000000 1705 91.802000 635 1865 1 chrUn.!!$F7 1230
9 TraesCS2D01G563500 chrUn 81406255 81408067 1812 True 1184.700000 2287 92.136500 1 1865 2 chrUn.!!$R10 1864
10 TraesCS2D01G563500 chrUn 81412403 81414203 1800 True 1165.200000 2248 91.980500 1 1865 2 chrUn.!!$R11 1864
11 TraesCS2D01G563500 chr6D 471707352 471709128 1776 False 2213.000000 2213 89.286000 94 1865 1 chr6D.!!$F2 1771
12 TraesCS2D01G563500 chr6D 471823268 471825037 1769 False 1142.950000 2198 93.771000 1 1836 2 chr6D.!!$F3 1835
13 TraesCS2D01G563500 chr6A 617816390 617817147 757 True 872.000000 872 87.811000 94 838 1 chr6A.!!$R1 744
14 TraesCS2D01G563500 chr6A 617929325 617933084 3759 True 776.600000 2154 93.747333 1 1865 3 chr6A.!!$R2 1864
15 TraesCS2D01G563500 chr7B 747626837 747628353 1516 True 1967.000000 1967 90.335000 107 1601 1 chr7B.!!$R3 1494

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
75 76 0.521242 CGGCAAGCGTGATAAGCAAC 60.521 55.0 2.99 0.0 37.01 4.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2074 13855 0.248458 CGCGTGAACTGGTTGCTTTT 60.248 50.0 0.0 0.0 0.0 2.27 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 5.413833 CAGATCCAAAGCAACTTGTAGTGAT 59.586 40.000 0.00 0.00 0.00 3.06
45 46 5.413833 AGATCCAAAGCAACTTGTAGTGATG 59.586 40.000 0.00 0.00 0.00 3.07
46 47 4.713553 TCCAAAGCAACTTGTAGTGATGA 58.286 39.130 0.00 0.00 0.00 2.92
47 48 4.515191 TCCAAAGCAACTTGTAGTGATGAC 59.485 41.667 0.00 0.00 0.00 3.06
48 49 4.516698 CCAAAGCAACTTGTAGTGATGACT 59.483 41.667 0.00 0.00 36.07 3.41
49 50 5.009010 CCAAAGCAACTTGTAGTGATGACTT 59.991 40.000 0.00 0.00 33.21 3.01
50 51 6.204688 CCAAAGCAACTTGTAGTGATGACTTA 59.795 38.462 0.00 0.00 33.21 2.24
51 52 7.094634 CCAAAGCAACTTGTAGTGATGACTTAT 60.095 37.037 0.00 0.00 33.21 1.73
52 53 7.602517 AAGCAACTTGTAGTGATGACTTATC 57.397 36.000 0.00 0.00 33.21 1.75
53 54 5.807520 AGCAACTTGTAGTGATGACTTATCG 59.192 40.000 0.00 0.00 38.71 2.92
54 55 5.500931 GCAACTTGTAGTGATGACTTATCGC 60.501 44.000 0.00 0.00 44.80 4.58
58 59 1.846648 GTGATGACTTATCGCGCGG 59.153 57.895 31.69 16.53 38.71 6.46
59 60 1.949133 TGATGACTTATCGCGCGGC 60.949 57.895 31.69 12.76 38.71 6.53
60 61 1.949133 GATGACTTATCGCGCGGCA 60.949 57.895 31.69 15.48 0.00 5.69
61 62 1.487452 GATGACTTATCGCGCGGCAA 61.487 55.000 31.69 21.80 0.00 4.52
62 63 1.490693 ATGACTTATCGCGCGGCAAG 61.491 55.000 31.69 30.54 0.00 4.01
63 64 3.492980 GACTTATCGCGCGGCAAGC 62.493 63.158 30.78 23.03 43.95 4.01
72 73 2.023320 GCGGCAAGCGTGATAAGC 59.977 61.111 2.99 0.00 35.41 3.09
73 74 2.749865 GCGGCAAGCGTGATAAGCA 61.750 57.895 2.99 0.00 37.01 3.91
74 75 1.793581 CGGCAAGCGTGATAAGCAA 59.206 52.632 2.99 0.00 37.01 3.91
75 76 0.521242 CGGCAAGCGTGATAAGCAAC 60.521 55.000 2.99 0.00 37.01 4.17
76 77 0.521291 GGCAAGCGTGATAAGCAACA 59.479 50.000 2.99 0.00 37.01 3.33
77 78 1.068610 GGCAAGCGTGATAAGCAACAA 60.069 47.619 2.99 0.00 37.01 2.83
78 79 1.978782 GCAAGCGTGATAAGCAACAAC 59.021 47.619 2.99 0.00 37.01 3.32
79 80 2.584791 CAAGCGTGATAAGCAACAACC 58.415 47.619 0.00 0.00 37.01 3.77
80 81 1.890876 AGCGTGATAAGCAACAACCA 58.109 45.000 0.00 0.00 37.01 3.67
81 82 2.226330 AGCGTGATAAGCAACAACCAA 58.774 42.857 0.00 0.00 37.01 3.67
82 83 2.621055 AGCGTGATAAGCAACAACCAAA 59.379 40.909 0.00 0.00 37.01 3.28
83 84 2.979813 GCGTGATAAGCAACAACCAAAG 59.020 45.455 0.00 0.00 34.19 2.77
84 85 2.979813 CGTGATAAGCAACAACCAAAGC 59.020 45.455 0.00 0.00 0.00 3.51
85 86 3.317150 GTGATAAGCAACAACCAAAGCC 58.683 45.455 0.00 0.00 0.00 4.35
86 87 2.961741 TGATAAGCAACAACCAAAGCCA 59.038 40.909 0.00 0.00 0.00 4.75
87 88 3.386078 TGATAAGCAACAACCAAAGCCAA 59.614 39.130 0.00 0.00 0.00 4.52
88 89 4.040217 TGATAAGCAACAACCAAAGCCAAT 59.960 37.500 0.00 0.00 0.00 3.16
89 90 2.531522 AGCAACAACCAAAGCCAATC 57.468 45.000 0.00 0.00 0.00 2.67
90 91 1.761784 AGCAACAACCAAAGCCAATCA 59.238 42.857 0.00 0.00 0.00 2.57
91 92 2.137523 GCAACAACCAAAGCCAATCAG 58.862 47.619 0.00 0.00 0.00 2.90
92 93 2.137523 CAACAACCAAAGCCAATCAGC 58.862 47.619 0.00 0.00 0.00 4.26
96 97 2.418368 ACCAAAGCCAATCAGCGATA 57.582 45.000 0.00 0.00 38.01 2.92
102 103 4.782019 AAGCCAATCAGCGATACAAAAA 57.218 36.364 0.00 0.00 38.01 1.94
204 3843 3.896648 AAGATGCACCTTAAACACACG 57.103 42.857 0.00 0.00 0.00 4.49
280 3921 3.493129 TGCTACTTCAACTTACACGCTTG 59.507 43.478 0.00 0.00 0.00 4.01
331 3973 6.425721 CGTTACTCTCAACAAAAGGGTGATAA 59.574 38.462 0.00 0.00 0.00 1.75
529 7870 8.719560 ACAAAATGCATGCATTGTTATAATCA 57.280 26.923 38.98 7.33 44.86 2.57
613 7955 1.935873 CGAACACAAGATCATCGCCAT 59.064 47.619 0.00 0.00 0.00 4.40
626 7968 4.454678 TCATCGCCATGAGAAAAGCTAAT 58.545 39.130 0.00 0.00 33.80 1.73
630 7972 4.458989 TCGCCATGAGAAAAGCTAATGTTT 59.541 37.500 0.00 0.00 34.10 2.83
786 8142 4.844349 TCCTAGGCTTAGAGCATGTTTT 57.156 40.909 2.96 0.00 44.75 2.43
1035 8435 1.672854 CTGAATCGTGGCCGGGTCTA 61.673 60.000 2.18 0.00 33.95 2.59
1105 8505 3.743521 CCTGATATCAGAATTGCCCGAA 58.256 45.455 30.40 0.00 46.59 4.30
1371 8773 0.828022 ATGTGGGCATGCCTGAATTG 59.172 50.000 34.70 0.00 33.37 2.32
1444 8846 4.269183 TGAGTGTACTATTTGGCAATGGG 58.731 43.478 0.00 0.00 0.00 4.00
1494 8897 6.500684 TTTGATGAGTGTCTTGCTTTATCC 57.499 37.500 0.00 0.00 0.00 2.59
1532 8935 2.627515 AGCGCCATGTCATACTCAAT 57.372 45.000 2.29 0.00 0.00 2.57
1616 9019 6.839124 TTAAAGAAGTGCCAATGATCATGT 57.161 33.333 9.46 0.00 0.00 3.21
1685 12456 1.338136 CCCACCCCCTAGTGTGCTAG 61.338 65.000 0.00 0.00 43.26 3.42
1693 12464 1.757118 CCTAGTGTGCTAGCTTGCCTA 59.243 52.381 17.57 10.40 42.51 3.93
1721 12493 7.350382 TCTACATCTCTCTCACTTATGTCCTT 58.650 38.462 0.00 0.00 33.15 3.36
1861 12640 4.223700 ACTGATCATCACACACCTACATGT 59.776 41.667 2.69 2.69 0.00 3.21
1865 12644 5.324784 TCATCACACACCTACATGTAGTC 57.675 43.478 27.07 0.00 0.00 2.59
1866 12645 4.770010 TCATCACACACCTACATGTAGTCA 59.230 41.667 27.07 0.37 0.00 3.41
1867 12646 4.514781 TCACACACCTACATGTAGTCAC 57.485 45.455 27.07 0.00 0.00 3.67
1869 12648 5.318630 TCACACACCTACATGTAGTCACTA 58.681 41.667 27.07 7.57 0.00 2.74
1870 12649 5.182570 TCACACACCTACATGTAGTCACTAC 59.817 44.000 27.07 8.15 37.46 2.73
1899 12678 6.721704 AATGAGAGAATTCCTTATTTGGCC 57.278 37.500 0.65 0.00 0.00 5.36
1912 13693 8.213489 TCCTTATTTGGCCCTTTCTTAAAATT 57.787 30.769 0.00 0.00 0.00 1.82
1913 13694 8.318412 TCCTTATTTGGCCCTTTCTTAAAATTC 58.682 33.333 0.00 0.00 0.00 2.17
1914 13695 7.277760 CCTTATTTGGCCCTTTCTTAAAATTCG 59.722 37.037 0.00 0.00 0.00 3.34
1915 13696 3.586100 TGGCCCTTTCTTAAAATTCGC 57.414 42.857 0.00 0.00 0.00 4.70
1917 13698 3.576550 TGGCCCTTTCTTAAAATTCGCTT 59.423 39.130 0.00 0.00 0.00 4.68
1918 13699 4.174009 GGCCCTTTCTTAAAATTCGCTTC 58.826 43.478 0.00 0.00 0.00 3.86
1919 13700 4.174009 GCCCTTTCTTAAAATTCGCTTCC 58.826 43.478 0.00 0.00 0.00 3.46
1921 13702 4.462834 CCCTTTCTTAAAATTCGCTTCCCT 59.537 41.667 0.00 0.00 0.00 4.20
1923 13704 6.321435 CCCTTTCTTAAAATTCGCTTCCCTAT 59.679 38.462 0.00 0.00 0.00 2.57
1924 13705 7.147897 CCCTTTCTTAAAATTCGCTTCCCTATT 60.148 37.037 0.00 0.00 0.00 1.73
1926 13707 8.980143 TTTCTTAAAATTCGCTTCCCTATTTG 57.020 30.769 0.00 0.00 0.00 2.32
1927 13708 7.095695 TCTTAAAATTCGCTTCCCTATTTGG 57.904 36.000 0.00 0.00 0.00 3.28
1928 13709 3.801114 AAATTCGCTTCCCTATTTGGC 57.199 42.857 0.00 0.00 0.00 4.52
1929 13710 1.692411 ATTCGCTTCCCTATTTGGCC 58.308 50.000 0.00 0.00 0.00 5.36
1930 13711 0.395173 TTCGCTTCCCTATTTGGCCC 60.395 55.000 0.00 0.00 0.00 5.80
1931 13712 1.077068 CGCTTCCCTATTTGGCCCA 60.077 57.895 0.00 0.00 0.00 5.36
1932 13713 0.682855 CGCTTCCCTATTTGGCCCAA 60.683 55.000 0.00 0.00 0.00 4.12
1933 13714 1.567357 GCTTCCCTATTTGGCCCAAA 58.433 50.000 12.07 12.07 37.75 3.28
1934 13715 2.118679 GCTTCCCTATTTGGCCCAAAT 58.881 47.619 24.22 24.22 44.74 2.32
1935 13716 3.304829 GCTTCCCTATTTGGCCCAAATA 58.695 45.455 23.89 23.89 41.50 1.40
1936 13717 3.709141 GCTTCCCTATTTGGCCCAAATAA 59.291 43.478 25.03 14.09 43.01 1.40
1937 13718 4.163268 GCTTCCCTATTTGGCCCAAATAAA 59.837 41.667 25.03 17.13 43.01 1.40
1938 13719 5.338789 GCTTCCCTATTTGGCCCAAATAAAA 60.339 40.000 25.03 18.47 43.01 1.52
1939 13720 6.704056 TTCCCTATTTGGCCCAAATAAAAA 57.296 33.333 25.03 17.28 43.01 1.94
1940 13721 6.899892 TCCCTATTTGGCCCAAATAAAAAT 57.100 33.333 25.03 6.67 43.01 1.82
1941 13722 7.277405 TCCCTATTTGGCCCAAATAAAAATT 57.723 32.000 25.03 5.99 43.01 1.82
1942 13723 7.703755 TCCCTATTTGGCCCAAATAAAAATTT 58.296 30.769 25.03 5.31 43.01 1.82
1943 13724 7.831690 TCCCTATTTGGCCCAAATAAAAATTTC 59.168 33.333 25.03 0.00 43.01 2.17
1944 13725 7.833682 CCCTATTTGGCCCAAATAAAAATTTCT 59.166 33.333 25.03 3.98 43.01 2.52
1945 13726 9.241919 CCTATTTGGCCCAAATAAAAATTTCTT 57.758 29.630 25.03 3.50 43.01 2.52
1947 13728 8.938801 ATTTGGCCCAAATAAAAATTTCTTCT 57.061 26.923 20.03 0.00 41.50 2.85
1948 13729 7.977789 TTGGCCCAAATAAAAATTTCTTCTC 57.022 32.000 0.00 0.00 0.00 2.87
1949 13730 7.315066 TGGCCCAAATAAAAATTTCTTCTCT 57.685 32.000 0.00 0.00 0.00 3.10
1950 13731 8.429237 TGGCCCAAATAAAAATTTCTTCTCTA 57.571 30.769 0.00 0.00 0.00 2.43
1951 13732 9.045745 TGGCCCAAATAAAAATTTCTTCTCTAT 57.954 29.630 0.00 0.00 0.00 1.98
1952 13733 9.890629 GGCCCAAATAAAAATTTCTTCTCTATT 57.109 29.630 0.00 0.00 0.00 1.73
1967 13748 9.924650 TTCTTCTCTATTTGACACCTAAAGTAC 57.075 33.333 0.00 0.00 0.00 2.73
1968 13749 9.085645 TCTTCTCTATTTGACACCTAAAGTACA 57.914 33.333 0.00 0.00 0.00 2.90
1969 13750 9.877178 CTTCTCTATTTGACACCTAAAGTACAT 57.123 33.333 0.00 0.00 0.00 2.29
1973 13754 9.146984 TCTATTTGACACCTAAAGTACATTTCG 57.853 33.333 0.00 0.00 32.01 3.46
1974 13755 7.739498 ATTTGACACCTAAAGTACATTTCGT 57.261 32.000 0.00 0.00 32.01 3.85
1975 13756 7.556733 TTTGACACCTAAAGTACATTTCGTT 57.443 32.000 0.00 0.00 32.01 3.85
1976 13757 6.533819 TGACACCTAAAGTACATTTCGTTG 57.466 37.500 0.00 0.00 32.01 4.10
1977 13758 5.049954 TGACACCTAAAGTACATTTCGTTGC 60.050 40.000 0.00 0.00 32.01 4.17
1978 13759 5.061179 ACACCTAAAGTACATTTCGTTGCT 58.939 37.500 0.00 0.00 32.01 3.91
1979 13760 5.529800 ACACCTAAAGTACATTTCGTTGCTT 59.470 36.000 0.00 0.00 32.01 3.91
1980 13761 6.707161 ACACCTAAAGTACATTTCGTTGCTTA 59.293 34.615 0.00 0.00 32.01 3.09
1981 13762 7.389607 ACACCTAAAGTACATTTCGTTGCTTAT 59.610 33.333 0.00 0.00 32.01 1.73
1982 13763 8.875803 CACCTAAAGTACATTTCGTTGCTTATA 58.124 33.333 0.00 0.00 32.01 0.98
1983 13764 9.609346 ACCTAAAGTACATTTCGTTGCTTATAT 57.391 29.630 0.00 0.00 32.01 0.86
1986 13767 8.500753 AAAGTACATTTCGTTGCTTATATCCA 57.499 30.769 0.00 0.00 0.00 3.41
1987 13768 8.677148 AAGTACATTTCGTTGCTTATATCCAT 57.323 30.769 0.00 0.00 0.00 3.41
1988 13769 8.311650 AGTACATTTCGTTGCTTATATCCATC 57.688 34.615 0.00 0.00 0.00 3.51
1989 13770 6.560253 ACATTTCGTTGCTTATATCCATCC 57.440 37.500 0.00 0.00 0.00 3.51
1990 13771 6.061441 ACATTTCGTTGCTTATATCCATCCA 58.939 36.000 0.00 0.00 0.00 3.41
1991 13772 6.716628 ACATTTCGTTGCTTATATCCATCCAT 59.283 34.615 0.00 0.00 0.00 3.41
1992 13773 7.231317 ACATTTCGTTGCTTATATCCATCCATT 59.769 33.333 0.00 0.00 0.00 3.16
1993 13774 7.581213 TTTCGTTGCTTATATCCATCCATTT 57.419 32.000 0.00 0.00 0.00 2.32
1994 13775 7.581213 TTCGTTGCTTATATCCATCCATTTT 57.419 32.000 0.00 0.00 0.00 1.82
1995 13776 8.684386 TTCGTTGCTTATATCCATCCATTTTA 57.316 30.769 0.00 0.00 0.00 1.52
1996 13777 8.322906 TCGTTGCTTATATCCATCCATTTTAG 57.677 34.615 0.00 0.00 0.00 1.85
1997 13778 8.154203 TCGTTGCTTATATCCATCCATTTTAGA 58.846 33.333 0.00 0.00 0.00 2.10
1998 13779 8.230486 CGTTGCTTATATCCATCCATTTTAGAC 58.770 37.037 0.00 0.00 0.00 2.59
1999 13780 9.066892 GTTGCTTATATCCATCCATTTTAGACA 57.933 33.333 0.00 0.00 0.00 3.41
2000 13781 8.621532 TGCTTATATCCATCCATTTTAGACAC 57.378 34.615 0.00 0.00 0.00 3.67
2001 13782 8.439971 TGCTTATATCCATCCATTTTAGACACT 58.560 33.333 0.00 0.00 0.00 3.55
2002 13783 9.944376 GCTTATATCCATCCATTTTAGACACTA 57.056 33.333 0.00 0.00 0.00 2.74
2005 13786 8.833231 ATATCCATCCATTTTAGACACTAACG 57.167 34.615 0.00 0.00 0.00 3.18
2006 13787 5.424757 TCCATCCATTTTAGACACTAACGG 58.575 41.667 0.00 0.00 0.00 4.44
2007 13788 5.046159 TCCATCCATTTTAGACACTAACGGT 60.046 40.000 0.00 0.00 0.00 4.83
2019 13800 4.966850 CACTAACGGTGTTAAGTGTGAG 57.033 45.455 0.00 0.00 40.79 3.51
2020 13801 3.739300 CACTAACGGTGTTAAGTGTGAGG 59.261 47.826 0.00 0.00 40.79 3.86
2021 13802 2.994186 AACGGTGTTAAGTGTGAGGT 57.006 45.000 0.00 0.00 0.00 3.85
2022 13803 2.234300 ACGGTGTTAAGTGTGAGGTG 57.766 50.000 0.00 0.00 0.00 4.00
2023 13804 1.758280 ACGGTGTTAAGTGTGAGGTGA 59.242 47.619 0.00 0.00 0.00 4.02
2024 13805 2.168936 ACGGTGTTAAGTGTGAGGTGAA 59.831 45.455 0.00 0.00 0.00 3.18
2025 13806 3.199677 CGGTGTTAAGTGTGAGGTGAAA 58.800 45.455 0.00 0.00 0.00 2.69
2026 13807 3.623960 CGGTGTTAAGTGTGAGGTGAAAA 59.376 43.478 0.00 0.00 0.00 2.29
2027 13808 4.260620 CGGTGTTAAGTGTGAGGTGAAAAG 60.261 45.833 0.00 0.00 0.00 2.27
2028 13809 4.879545 GGTGTTAAGTGTGAGGTGAAAAGA 59.120 41.667 0.00 0.00 0.00 2.52
2029 13810 5.220796 GGTGTTAAGTGTGAGGTGAAAAGAC 60.221 44.000 0.00 0.00 0.00 3.01
2030 13811 5.585047 GTGTTAAGTGTGAGGTGAAAAGACT 59.415 40.000 0.00 0.00 0.00 3.24
2031 13812 6.759827 GTGTTAAGTGTGAGGTGAAAAGACTA 59.240 38.462 0.00 0.00 0.00 2.59
2032 13813 7.441458 GTGTTAAGTGTGAGGTGAAAAGACTAT 59.559 37.037 0.00 0.00 0.00 2.12
2033 13814 7.990886 TGTTAAGTGTGAGGTGAAAAGACTATT 59.009 33.333 0.00 0.00 0.00 1.73
2034 13815 8.837389 GTTAAGTGTGAGGTGAAAAGACTATTT 58.163 33.333 0.00 0.00 0.00 1.40
2035 13816 7.881775 AAGTGTGAGGTGAAAAGACTATTTT 57.118 32.000 0.00 0.00 0.00 1.82
2036 13817 7.264373 AGTGTGAGGTGAAAAGACTATTTTG 57.736 36.000 0.00 0.00 0.00 2.44
2037 13818 5.915196 GTGTGAGGTGAAAAGACTATTTTGC 59.085 40.000 0.00 0.00 0.00 3.68
2038 13819 5.009610 TGTGAGGTGAAAAGACTATTTTGCC 59.990 40.000 0.00 0.00 0.00 4.52
2039 13820 4.522789 TGAGGTGAAAAGACTATTTTGCCC 59.477 41.667 0.00 0.00 0.00 5.36
2040 13821 3.832490 AGGTGAAAAGACTATTTTGCCCC 59.168 43.478 0.00 0.00 0.00 5.80
2041 13822 3.832490 GGTGAAAAGACTATTTTGCCCCT 59.168 43.478 0.00 0.00 0.00 4.79
2042 13823 5.014202 GGTGAAAAGACTATTTTGCCCCTA 58.986 41.667 0.00 0.00 0.00 3.53
2043 13824 5.125578 GGTGAAAAGACTATTTTGCCCCTAG 59.874 44.000 0.00 0.00 0.00 3.02
2044 13825 5.710567 GTGAAAAGACTATTTTGCCCCTAGT 59.289 40.000 0.00 0.00 0.00 2.57
2045 13826 5.710099 TGAAAAGACTATTTTGCCCCTAGTG 59.290 40.000 0.00 0.00 0.00 2.74
2046 13827 3.283259 AGACTATTTTGCCCCTAGTGC 57.717 47.619 0.00 0.00 0.00 4.40
2047 13828 2.576191 AGACTATTTTGCCCCTAGTGCA 59.424 45.455 0.35 0.35 36.84 4.57
2048 13829 3.203040 AGACTATTTTGCCCCTAGTGCAT 59.797 43.478 5.16 0.00 38.76 3.96
2049 13830 4.412199 AGACTATTTTGCCCCTAGTGCATA 59.588 41.667 5.16 0.00 38.76 3.14
2050 13831 5.104109 AGACTATTTTGCCCCTAGTGCATAA 60.104 40.000 5.16 7.26 38.76 1.90
2051 13832 4.887655 ACTATTTTGCCCCTAGTGCATAAC 59.112 41.667 5.16 0.00 38.76 1.89
2052 13833 3.449746 TTTTGCCCCTAGTGCATAACT 57.550 42.857 5.16 0.00 43.40 2.24
2053 13834 4.577988 TTTTGCCCCTAGTGCATAACTA 57.422 40.909 5.16 0.00 40.56 2.24
2054 13835 4.788925 TTTGCCCCTAGTGCATAACTAT 57.211 40.909 5.16 0.00 40.65 2.12
2055 13836 3.769739 TGCCCCTAGTGCATAACTATG 57.230 47.619 0.00 0.00 40.65 2.23
2092 13873 1.921243 AAAAAGCAACCAGTTCACGC 58.079 45.000 0.00 0.00 0.00 5.34
2093 13874 0.248458 AAAAGCAACCAGTTCACGCG 60.248 50.000 3.53 3.53 0.00 6.01
2094 13875 1.373590 AAAGCAACCAGTTCACGCGT 61.374 50.000 5.58 5.58 0.00 6.01
2095 13876 2.047151 AAGCAACCAGTTCACGCGTG 62.047 55.000 32.76 32.76 0.00 5.34
2096 13877 2.819552 GCAACCAGTTCACGCGTGT 61.820 57.895 35.74 17.06 0.00 4.49
2097 13878 1.719117 CAACCAGTTCACGCGTGTT 59.281 52.632 35.74 20.48 0.00 3.32
2098 13879 0.098025 CAACCAGTTCACGCGTGTTT 59.902 50.000 35.74 20.67 0.00 2.83
2099 13880 0.806241 AACCAGTTCACGCGTGTTTT 59.194 45.000 35.74 20.32 0.00 2.43
2100 13881 1.654317 ACCAGTTCACGCGTGTTTTA 58.346 45.000 35.74 16.67 0.00 1.52
2101 13882 1.595794 ACCAGTTCACGCGTGTTTTAG 59.404 47.619 35.74 24.57 0.00 1.85
2102 13883 1.070175 CCAGTTCACGCGTGTTTTAGG 60.070 52.381 35.74 26.45 0.00 2.69
2103 13884 1.070175 CAGTTCACGCGTGTTTTAGGG 60.070 52.381 35.74 17.39 0.00 3.53
2104 13885 1.202557 AGTTCACGCGTGTTTTAGGGA 60.203 47.619 35.74 13.93 0.00 4.20
2105 13886 1.802365 GTTCACGCGTGTTTTAGGGAT 59.198 47.619 35.74 0.00 0.00 3.85
2106 13887 1.434555 TCACGCGTGTTTTAGGGATG 58.565 50.000 35.74 8.87 0.00 3.51
2107 13888 1.153353 CACGCGTGTTTTAGGGATGT 58.847 50.000 30.50 0.00 0.00 3.06
2108 13889 1.533731 CACGCGTGTTTTAGGGATGTT 59.466 47.619 30.50 0.00 0.00 2.71
2109 13890 1.533731 ACGCGTGTTTTAGGGATGTTG 59.466 47.619 12.93 0.00 0.00 3.33
2110 13891 1.801771 CGCGTGTTTTAGGGATGTTGA 59.198 47.619 0.00 0.00 0.00 3.18
2111 13892 2.224549 CGCGTGTTTTAGGGATGTTGAA 59.775 45.455 0.00 0.00 0.00 2.69
2112 13893 3.561503 GCGTGTTTTAGGGATGTTGAAC 58.438 45.455 0.00 0.00 0.00 3.18
2113 13894 3.610821 GCGTGTTTTAGGGATGTTGAACC 60.611 47.826 0.00 0.00 0.00 3.62
2114 13895 3.364565 CGTGTTTTAGGGATGTTGAACCG 60.365 47.826 0.00 0.00 0.00 4.44
2115 13896 3.816523 GTGTTTTAGGGATGTTGAACCGA 59.183 43.478 0.00 0.00 0.00 4.69
2116 13897 4.457949 GTGTTTTAGGGATGTTGAACCGAT 59.542 41.667 0.00 0.00 0.00 4.18
2117 13898 4.457603 TGTTTTAGGGATGTTGAACCGATG 59.542 41.667 0.00 0.00 0.00 3.84
2118 13899 2.325583 TAGGGATGTTGAACCGATGC 57.674 50.000 0.00 0.00 0.00 3.91
2119 13900 0.327924 AGGGATGTTGAACCGATGCA 59.672 50.000 0.00 0.00 0.00 3.96
2120 13901 0.451783 GGGATGTTGAACCGATGCAC 59.548 55.000 0.00 0.00 0.00 4.57
2121 13902 1.164411 GGATGTTGAACCGATGCACA 58.836 50.000 0.00 0.00 0.00 4.57
2122 13903 1.745087 GGATGTTGAACCGATGCACAT 59.255 47.619 0.00 0.00 0.00 3.21
2123 13904 2.478370 GGATGTTGAACCGATGCACATG 60.478 50.000 0.00 0.00 0.00 3.21
2124 13905 1.603456 TGTTGAACCGATGCACATGT 58.397 45.000 0.00 0.00 0.00 3.21
2125 13906 2.772287 TGTTGAACCGATGCACATGTA 58.228 42.857 0.00 0.00 0.00 2.29
2126 13907 3.342719 TGTTGAACCGATGCACATGTAT 58.657 40.909 0.00 0.00 0.00 2.29
2127 13908 4.508662 TGTTGAACCGATGCACATGTATA 58.491 39.130 0.00 0.00 0.00 1.47
2128 13909 5.122519 TGTTGAACCGATGCACATGTATAT 58.877 37.500 0.00 0.00 0.00 0.86
2129 13910 5.007528 TGTTGAACCGATGCACATGTATATG 59.992 40.000 0.00 0.00 40.24 1.78
2131 13912 5.848406 TGAACCGATGCACATGTATATGTA 58.152 37.500 4.64 0.00 45.53 2.29
2132 13913 6.463360 TGAACCGATGCACATGTATATGTAT 58.537 36.000 4.64 0.00 45.53 2.29
2133 13914 6.368516 TGAACCGATGCACATGTATATGTATG 59.631 38.462 4.64 0.00 45.53 2.39
2134 13915 4.631377 ACCGATGCACATGTATATGTATGC 59.369 41.667 4.64 6.46 45.53 3.14
2135 13916 4.872124 CCGATGCACATGTATATGTATGCT 59.128 41.667 13.66 3.13 45.53 3.79
2136 13917 5.006068 CCGATGCACATGTATATGTATGCTC 59.994 44.000 13.66 9.07 45.53 4.26
2137 13918 5.006068 CGATGCACATGTATATGTATGCTCC 59.994 44.000 13.66 6.80 45.53 4.70
2138 13919 5.226194 TGCACATGTATATGTATGCTCCA 57.774 39.130 13.66 1.09 45.53 3.86
2139 13920 5.619220 TGCACATGTATATGTATGCTCCAA 58.381 37.500 13.66 0.00 45.53 3.53
2140 13921 6.240145 TGCACATGTATATGTATGCTCCAAT 58.760 36.000 13.66 0.00 45.53 3.16
2141 13922 6.149807 TGCACATGTATATGTATGCTCCAATG 59.850 38.462 13.66 0.00 45.53 2.82
2142 13923 6.149973 GCACATGTATATGTATGCTCCAATGT 59.850 38.462 4.64 0.00 45.53 2.71
2143 13924 7.308770 GCACATGTATATGTATGCTCCAATGTT 60.309 37.037 4.64 0.00 45.53 2.71
2144 13925 8.232513 CACATGTATATGTATGCTCCAATGTTC 58.767 37.037 4.64 0.00 45.53 3.18
2145 13926 8.159447 ACATGTATATGTATGCTCCAATGTTCT 58.841 33.333 2.87 0.00 45.45 3.01
2146 13927 7.967890 TGTATATGTATGCTCCAATGTTCTG 57.032 36.000 0.00 0.00 0.00 3.02
2147 13928 7.508687 TGTATATGTATGCTCCAATGTTCTGT 58.491 34.615 0.00 0.00 0.00 3.41
2148 13929 7.992608 TGTATATGTATGCTCCAATGTTCTGTT 59.007 33.333 0.00 0.00 0.00 3.16
2149 13930 5.824904 ATGTATGCTCCAATGTTCTGTTC 57.175 39.130 0.00 0.00 0.00 3.18
2150 13931 4.009675 TGTATGCTCCAATGTTCTGTTCC 58.990 43.478 0.00 0.00 0.00 3.62
2151 13932 2.957402 TGCTCCAATGTTCTGTTCCT 57.043 45.000 0.00 0.00 0.00 3.36
2152 13933 3.228188 TGCTCCAATGTTCTGTTCCTT 57.772 42.857 0.00 0.00 0.00 3.36
2153 13934 4.365514 TGCTCCAATGTTCTGTTCCTTA 57.634 40.909 0.00 0.00 0.00 2.69
2154 13935 4.326826 TGCTCCAATGTTCTGTTCCTTAG 58.673 43.478 0.00 0.00 0.00 2.18
2155 13936 4.041567 TGCTCCAATGTTCTGTTCCTTAGA 59.958 41.667 0.00 0.00 0.00 2.10
2156 13937 5.189180 GCTCCAATGTTCTGTTCCTTAGAT 58.811 41.667 0.00 0.00 0.00 1.98
2157 13938 6.070251 TGCTCCAATGTTCTGTTCCTTAGATA 60.070 38.462 0.00 0.00 0.00 1.98
2158 13939 6.995091 GCTCCAATGTTCTGTTCCTTAGATAT 59.005 38.462 0.00 0.00 0.00 1.63
2159 13940 7.172361 GCTCCAATGTTCTGTTCCTTAGATATC 59.828 40.741 0.00 0.00 0.00 1.63
2160 13941 8.324191 TCCAATGTTCTGTTCCTTAGATATCT 57.676 34.615 10.73 10.73 0.00 1.98
2161 13942 8.206867 TCCAATGTTCTGTTCCTTAGATATCTG 58.793 37.037 15.79 0.00 0.00 2.90
2162 13943 7.443575 CCAATGTTCTGTTCCTTAGATATCTGG 59.556 40.741 15.79 9.02 0.00 3.86
2163 13944 7.682787 ATGTTCTGTTCCTTAGATATCTGGT 57.317 36.000 15.79 0.00 0.00 4.00
2164 13945 7.113658 TGTTCTGTTCCTTAGATATCTGGTC 57.886 40.000 15.79 7.53 0.00 4.02
2165 13946 6.897966 TGTTCTGTTCCTTAGATATCTGGTCT 59.102 38.462 15.79 0.00 0.00 3.85
2166 13947 6.968263 TCTGTTCCTTAGATATCTGGTCTG 57.032 41.667 15.79 10.11 0.00 3.51
2167 13948 6.436027 TCTGTTCCTTAGATATCTGGTCTGT 58.564 40.000 15.79 0.00 0.00 3.41
2168 13949 6.322456 TCTGTTCCTTAGATATCTGGTCTGTG 59.678 42.308 15.79 0.43 0.00 3.66
2169 13950 5.163405 TGTTCCTTAGATATCTGGTCTGTGC 60.163 44.000 15.79 0.25 0.00 4.57
2170 13951 3.570125 TCCTTAGATATCTGGTCTGTGCG 59.430 47.826 15.79 0.00 0.00 5.34
2171 13952 3.319405 CCTTAGATATCTGGTCTGTGCGT 59.681 47.826 15.79 0.00 0.00 5.24
2172 13953 2.879002 AGATATCTGGTCTGTGCGTG 57.121 50.000 3.89 0.00 0.00 5.34
2173 13954 2.103373 AGATATCTGGTCTGTGCGTGT 58.897 47.619 3.89 0.00 0.00 4.49
2174 13955 3.288092 AGATATCTGGTCTGTGCGTGTA 58.712 45.455 3.89 0.00 0.00 2.90
2175 13956 3.699538 AGATATCTGGTCTGTGCGTGTAA 59.300 43.478 3.89 0.00 0.00 2.41
2176 13957 2.831685 ATCTGGTCTGTGCGTGTAAA 57.168 45.000 0.00 0.00 0.00 2.01
2177 13958 2.148916 TCTGGTCTGTGCGTGTAAAG 57.851 50.000 0.00 0.00 0.00 1.85
2178 13959 1.148310 CTGGTCTGTGCGTGTAAAGG 58.852 55.000 0.00 0.00 0.00 3.11
2179 13960 0.882927 TGGTCTGTGCGTGTAAAGGC 60.883 55.000 0.00 0.00 0.00 4.35
2180 13961 1.574702 GGTCTGTGCGTGTAAAGGCC 61.575 60.000 0.00 0.00 0.00 5.19
2181 13962 0.882927 GTCTGTGCGTGTAAAGGCCA 60.883 55.000 5.01 0.00 0.00 5.36
2182 13963 0.036164 TCTGTGCGTGTAAAGGCCAT 59.964 50.000 5.01 0.00 0.00 4.40
2183 13964 1.276705 TCTGTGCGTGTAAAGGCCATA 59.723 47.619 5.01 0.00 0.00 2.74
2184 13965 1.396996 CTGTGCGTGTAAAGGCCATAC 59.603 52.381 5.01 8.76 0.00 2.39
2185 13966 1.270893 TGTGCGTGTAAAGGCCATACA 60.271 47.619 15.27 15.27 0.00 2.29
2186 13967 1.807742 GTGCGTGTAAAGGCCATACAA 59.192 47.619 19.46 5.50 35.21 2.41
2189 13970 3.239254 GCGTGTAAAGGCCATACAAAAC 58.761 45.455 19.46 10.51 35.21 2.43
2190 13971 3.304794 GCGTGTAAAGGCCATACAAAACA 60.305 43.478 19.46 5.24 35.21 2.83
2194 13975 6.092748 GTGTAAAGGCCATACAAAACATCAG 58.907 40.000 19.46 0.00 35.21 2.90
2195 13976 6.007076 TGTAAAGGCCATACAAAACATCAGA 58.993 36.000 16.51 0.00 30.65 3.27
2197 13978 5.391312 AAGGCCATACAAAACATCAGAAC 57.609 39.130 5.01 0.00 0.00 3.01
2199 13980 5.079643 AGGCCATACAAAACATCAGAACTT 58.920 37.500 5.01 0.00 0.00 2.66
2200 13981 5.047802 AGGCCATACAAAACATCAGAACTTG 60.048 40.000 5.01 0.00 0.00 3.16
2205 13986 8.017373 CCATACAAAACATCAGAACTTGTACTG 58.983 37.037 0.00 0.00 35.82 2.74
2208 13989 6.772716 ACAAAACATCAGAACTTGTACTGGAT 59.227 34.615 0.00 0.00 35.20 3.41
2209 13990 7.936847 ACAAAACATCAGAACTTGTACTGGATA 59.063 33.333 0.00 0.00 35.20 2.59
2211 13992 8.723942 AAACATCAGAACTTGTACTGGATATC 57.276 34.615 0.00 0.00 35.20 1.63
2212 13993 6.507900 ACATCAGAACTTGTACTGGATATCG 58.492 40.000 0.00 0.00 35.20 2.92
2213 13994 6.321435 ACATCAGAACTTGTACTGGATATCGA 59.679 38.462 0.00 0.00 35.20 3.59
2218 13999 7.168302 CAGAACTTGTACTGGATATCGATGAAC 59.832 40.741 8.54 0.00 0.00 3.18
2224 14005 7.947282 TGTACTGGATATCGATGAACAATACA 58.053 34.615 8.54 10.95 0.00 2.29
2226 14007 9.424319 GTACTGGATATCGATGAACAATACAAT 57.576 33.333 8.54 0.00 0.00 2.71
2228 14009 9.424319 ACTGGATATCGATGAACAATACAATAC 57.576 33.333 8.54 0.00 0.00 1.89
2229 14010 8.771920 TGGATATCGATGAACAATACAATACC 57.228 34.615 8.54 0.00 0.00 2.73
2230 14011 8.371699 TGGATATCGATGAACAATACAATACCA 58.628 33.333 8.54 0.00 0.00 3.25
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 4.516698 CACTACAAGTTGCTTTGGATCTGT 59.483 41.667 1.81 0.00 32.32 3.41
44 45 2.125872 TTGCCGCGCGATAAGTCA 60.126 55.556 34.63 15.31 0.00 3.41
45 46 2.621000 CTTGCCGCGCGATAAGTC 59.379 61.111 34.63 12.82 0.00 3.01
46 47 3.564027 GCTTGCCGCGCGATAAGT 61.564 61.111 34.63 0.00 0.00 2.24
55 56 2.023320 GCTTATCACGCTTGCCGC 59.977 61.111 0.00 0.00 41.76 6.53
56 57 0.521242 GTTGCTTATCACGCTTGCCG 60.521 55.000 0.00 0.00 44.21 5.69
57 58 0.521291 TGTTGCTTATCACGCTTGCC 59.479 50.000 0.00 0.00 0.00 4.52
58 59 1.978782 GTTGTTGCTTATCACGCTTGC 59.021 47.619 0.00 0.00 0.00 4.01
59 60 2.031245 TGGTTGTTGCTTATCACGCTTG 60.031 45.455 0.00 0.00 0.00 4.01
60 61 2.226330 TGGTTGTTGCTTATCACGCTT 58.774 42.857 0.00 0.00 0.00 4.68
61 62 1.890876 TGGTTGTTGCTTATCACGCT 58.109 45.000 0.00 0.00 0.00 5.07
62 63 2.697431 TTGGTTGTTGCTTATCACGC 57.303 45.000 0.00 0.00 0.00 5.34
63 64 2.979813 GCTTTGGTTGTTGCTTATCACG 59.020 45.455 0.00 0.00 0.00 4.35
64 65 3.243704 TGGCTTTGGTTGTTGCTTATCAC 60.244 43.478 0.00 0.00 0.00 3.06
65 66 2.961741 TGGCTTTGGTTGTTGCTTATCA 59.038 40.909 0.00 0.00 0.00 2.15
66 67 3.658757 TGGCTTTGGTTGTTGCTTATC 57.341 42.857 0.00 0.00 0.00 1.75
67 68 4.040217 TGATTGGCTTTGGTTGTTGCTTAT 59.960 37.500 0.00 0.00 0.00 1.73
68 69 3.386078 TGATTGGCTTTGGTTGTTGCTTA 59.614 39.130 0.00 0.00 0.00 3.09
69 70 2.170187 TGATTGGCTTTGGTTGTTGCTT 59.830 40.909 0.00 0.00 0.00 3.91
70 71 1.761784 TGATTGGCTTTGGTTGTTGCT 59.238 42.857 0.00 0.00 0.00 3.91
71 72 2.137523 CTGATTGGCTTTGGTTGTTGC 58.862 47.619 0.00 0.00 0.00 4.17
72 73 2.137523 GCTGATTGGCTTTGGTTGTTG 58.862 47.619 0.00 0.00 0.00 3.33
73 74 1.269726 CGCTGATTGGCTTTGGTTGTT 60.270 47.619 0.00 0.00 0.00 2.83
74 75 0.314935 CGCTGATTGGCTTTGGTTGT 59.685 50.000 0.00 0.00 0.00 3.32
75 76 0.597568 TCGCTGATTGGCTTTGGTTG 59.402 50.000 0.00 0.00 0.00 3.77
76 77 1.549203 ATCGCTGATTGGCTTTGGTT 58.451 45.000 0.00 0.00 0.00 3.67
77 78 2.017049 GTATCGCTGATTGGCTTTGGT 58.983 47.619 0.00 0.00 0.00 3.67
78 79 2.016318 TGTATCGCTGATTGGCTTTGG 58.984 47.619 0.00 0.00 0.00 3.28
79 80 3.763097 TTGTATCGCTGATTGGCTTTG 57.237 42.857 0.00 0.00 0.00 2.77
80 81 4.782019 TTTTGTATCGCTGATTGGCTTT 57.218 36.364 0.00 0.00 0.00 3.51
81 82 4.782019 TTTTTGTATCGCTGATTGGCTT 57.218 36.364 0.00 0.00 0.00 4.35
204 3843 3.471680 GAGCATCTCCACATAGAAACCC 58.528 50.000 0.00 0.00 0.00 4.11
236 3877 8.213518 AGCATGTACGTATTTGATCTTTGATT 57.786 30.769 0.00 0.00 0.00 2.57
280 3921 4.505191 GCCATGACACAATAATTCATGCAC 59.495 41.667 0.00 0.00 43.55 4.57
287 3928 5.581126 AACGATGCCATGACACAATAATT 57.419 34.783 0.00 0.00 0.00 1.40
331 3973 8.345724 ACTTGATTGATTAAGAAACATCAGCT 57.654 30.769 2.92 0.00 31.04 4.24
459 7800 2.236893 TCAGCATATGCACTCCTTGTCA 59.763 45.455 28.62 0.53 45.16 3.58
613 7955 8.232913 ACCTAACAAAACATTAGCTTTTCTCA 57.767 30.769 0.00 0.00 0.00 3.27
626 7968 7.241042 AGAGACTGCTATACCTAACAAAACA 57.759 36.000 0.00 0.00 0.00 2.83
630 7972 7.147880 GGAAGAAGAGACTGCTATACCTAACAA 60.148 40.741 0.00 0.00 0.00 2.83
786 8142 9.455144 TCTGGTATTAACTTATAAAGGGATGGA 57.545 33.333 0.00 0.00 0.00 3.41
891 8291 8.834465 ACATAGATAATCAAGAGAAACATGCAC 58.166 33.333 0.00 0.00 0.00 4.57
949 8349 4.141779 GCCTTCCTCCCTTTCGAAACTATA 60.142 45.833 6.47 0.00 0.00 1.31
1035 8435 5.047164 TGCTGCATTCACTTCAATACCAATT 60.047 36.000 0.00 0.00 0.00 2.32
1494 8897 5.235186 GGCGCTAATATTATGAGCCATACAG 59.765 44.000 22.51 5.36 42.37 2.74
1532 8935 6.964908 TCTTTCTGAAAACGCACATTGATAA 58.035 32.000 4.18 0.00 0.00 1.75
1601 9004 3.056678 TCCACAAACATGATCATTGGCAC 60.057 43.478 15.73 0.00 0.00 5.01
1604 9007 7.009448 CGTATTTTCCACAAACATGATCATTGG 59.991 37.037 14.74 14.74 0.00 3.16
1607 9010 7.156876 ACGTATTTTCCACAAACATGATCAT 57.843 32.000 1.18 1.18 0.00 2.45
1616 9019 7.989416 AAGGATTCTACGTATTTTCCACAAA 57.011 32.000 15.91 0.00 0.00 2.83
1685 12456 4.766891 AGAGAGATGTAGAGATAGGCAAGC 59.233 45.833 0.00 0.00 0.00 4.01
1693 12464 7.665559 GGACATAAGTGAGAGAGATGTAGAGAT 59.334 40.741 0.00 0.00 31.03 2.75
1721 12493 2.763933 AGCGACGAGAGATATCCGTTA 58.236 47.619 0.00 0.00 36.60 3.18
1782 12560 5.856455 CCTTTAGCTTTTCGTGGTGTATTTG 59.144 40.000 0.00 0.00 0.00 2.32
1873 12652 8.043113 GGCCAAATAAGGAATTCTCTCATTTTT 58.957 33.333 5.23 0.00 0.00 1.94
1874 12653 7.365028 GGGCCAAATAAGGAATTCTCTCATTTT 60.365 37.037 4.39 0.78 0.00 1.82
1876 12655 5.600069 GGGCCAAATAAGGAATTCTCTCATT 59.400 40.000 4.39 0.00 0.00 2.57
1878 12657 4.230502 AGGGCCAAATAAGGAATTCTCTCA 59.769 41.667 6.18 0.00 0.00 3.27
1879 12658 4.797743 AGGGCCAAATAAGGAATTCTCTC 58.202 43.478 6.18 0.00 0.00 3.20
1881 12660 5.658634 AGAAAGGGCCAAATAAGGAATTCTC 59.341 40.000 6.18 0.00 0.00 2.87
1882 12661 5.593786 AGAAAGGGCCAAATAAGGAATTCT 58.406 37.500 6.18 0.00 0.00 2.40
1883 12662 5.939764 AGAAAGGGCCAAATAAGGAATTC 57.060 39.130 6.18 0.00 0.00 2.17
1885 12664 7.806680 TTTAAGAAAGGGCCAAATAAGGAAT 57.193 32.000 6.18 0.00 0.00 3.01
1887 12666 7.806680 ATTTTAAGAAAGGGCCAAATAAGGA 57.193 32.000 6.18 0.00 0.00 3.36
1888 12667 7.277760 CGAATTTTAAGAAAGGGCCAAATAAGG 59.722 37.037 6.18 0.00 0.00 2.69
1889 12668 7.201522 GCGAATTTTAAGAAAGGGCCAAATAAG 60.202 37.037 6.18 0.57 0.00 1.73
1890 12669 6.592220 GCGAATTTTAAGAAAGGGCCAAATAA 59.408 34.615 6.18 0.00 0.00 1.40
1891 12670 6.071051 AGCGAATTTTAAGAAAGGGCCAAATA 60.071 34.615 6.18 0.00 0.00 1.40
1892 12671 4.935205 GCGAATTTTAAGAAAGGGCCAAAT 59.065 37.500 6.18 0.00 0.00 2.32
1893 12672 4.039852 AGCGAATTTTAAGAAAGGGCCAAA 59.960 37.500 6.18 0.00 0.00 3.28
1894 12673 3.576550 AGCGAATTTTAAGAAAGGGCCAA 59.423 39.130 6.18 0.00 0.00 4.52
1896 12675 3.868757 AGCGAATTTTAAGAAAGGGCC 57.131 42.857 0.00 0.00 0.00 5.80
1897 12676 4.174009 GGAAGCGAATTTTAAGAAAGGGC 58.826 43.478 0.00 0.00 0.00 5.19
1898 12677 4.462834 AGGGAAGCGAATTTTAAGAAAGGG 59.537 41.667 0.00 0.00 0.00 3.95
1899 12678 5.644977 AGGGAAGCGAATTTTAAGAAAGG 57.355 39.130 0.00 0.00 0.00 3.11
1912 13693 1.226262 GGGCCAAATAGGGAAGCGA 59.774 57.895 4.39 0.00 38.09 4.93
1913 13694 0.682855 TTGGGCCAAATAGGGAAGCG 60.683 55.000 18.51 0.00 38.09 4.68
1914 13695 1.567357 TTTGGGCCAAATAGGGAAGC 58.433 50.000 27.28 0.00 38.09 3.86
1915 13696 5.948742 TTTATTTGGGCCAAATAGGGAAG 57.051 39.130 36.84 0.00 43.92 3.46
1917 13698 6.899892 ATTTTTATTTGGGCCAAATAGGGA 57.100 33.333 36.84 28.75 43.92 4.20
1918 13699 7.833682 AGAAATTTTTATTTGGGCCAAATAGGG 59.166 33.333 36.84 0.00 43.92 3.53
1919 13700 8.806429 AGAAATTTTTATTTGGGCCAAATAGG 57.194 30.769 36.84 0.00 43.92 2.57
1923 13704 8.217111 AGAGAAGAAATTTTTATTTGGGCCAAA 58.783 29.630 32.12 32.12 37.75 3.28
1924 13705 7.744733 AGAGAAGAAATTTTTATTTGGGCCAA 58.255 30.769 16.66 16.66 0.00 4.52
1926 13707 9.890629 AATAGAGAAGAAATTTTTATTTGGGCC 57.109 29.630 0.00 0.00 0.00 5.80
1941 13722 9.924650 GTACTTTAGGTGTCAAATAGAGAAGAA 57.075 33.333 0.00 0.00 0.00 2.52
1942 13723 9.085645 TGTACTTTAGGTGTCAAATAGAGAAGA 57.914 33.333 0.00 0.00 0.00 2.87
1943 13724 9.877178 ATGTACTTTAGGTGTCAAATAGAGAAG 57.123 33.333 0.00 0.00 0.00 2.85
1947 13728 9.146984 CGAAATGTACTTTAGGTGTCAAATAGA 57.853 33.333 0.00 0.00 0.00 1.98
1948 13729 8.932791 ACGAAATGTACTTTAGGTGTCAAATAG 58.067 33.333 0.00 0.00 0.00 1.73
1949 13730 8.836268 ACGAAATGTACTTTAGGTGTCAAATA 57.164 30.769 0.00 0.00 0.00 1.40
1950 13731 7.739498 ACGAAATGTACTTTAGGTGTCAAAT 57.261 32.000 0.00 0.00 0.00 2.32
1951 13732 7.411274 CAACGAAATGTACTTTAGGTGTCAAA 58.589 34.615 0.00 0.00 33.81 2.69
1952 13733 6.512091 GCAACGAAATGTACTTTAGGTGTCAA 60.512 38.462 13.26 0.00 38.84 3.18
1953 13734 5.049954 GCAACGAAATGTACTTTAGGTGTCA 60.050 40.000 13.26 0.00 38.84 3.58
1954 13735 5.178809 AGCAACGAAATGTACTTTAGGTGTC 59.821 40.000 13.26 8.55 38.84 3.67
1955 13736 5.061179 AGCAACGAAATGTACTTTAGGTGT 58.939 37.500 13.26 2.12 38.84 4.16
1956 13737 5.607119 AGCAACGAAATGTACTTTAGGTG 57.393 39.130 9.77 9.77 39.40 4.00
1957 13738 7.916914 ATAAGCAACGAAATGTACTTTAGGT 57.083 32.000 0.00 0.00 31.59 3.08
1960 13741 9.602568 TGGATATAAGCAACGAAATGTACTTTA 57.397 29.630 0.00 0.00 31.59 1.85
1961 13742 8.500753 TGGATATAAGCAACGAAATGTACTTT 57.499 30.769 0.00 0.00 31.59 2.66
1962 13743 8.677148 ATGGATATAAGCAACGAAATGTACTT 57.323 30.769 0.00 0.00 33.22 2.24
1963 13744 7.387948 GGATGGATATAAGCAACGAAATGTACT 59.612 37.037 0.00 0.00 0.00 2.73
1964 13745 7.172532 TGGATGGATATAAGCAACGAAATGTAC 59.827 37.037 0.00 0.00 0.00 2.90
1965 13746 7.220740 TGGATGGATATAAGCAACGAAATGTA 58.779 34.615 0.00 0.00 0.00 2.29
1966 13747 6.061441 TGGATGGATATAAGCAACGAAATGT 58.939 36.000 0.00 0.00 0.00 2.71
1967 13748 6.558771 TGGATGGATATAAGCAACGAAATG 57.441 37.500 0.00 0.00 0.00 2.32
1968 13749 7.765695 AATGGATGGATATAAGCAACGAAAT 57.234 32.000 0.00 0.00 0.00 2.17
1969 13750 7.581213 AAATGGATGGATATAAGCAACGAAA 57.419 32.000 0.00 0.00 0.00 3.46
1970 13751 7.581213 AAAATGGATGGATATAAGCAACGAA 57.419 32.000 0.00 0.00 0.00 3.85
1971 13752 8.154203 TCTAAAATGGATGGATATAAGCAACGA 58.846 33.333 0.00 0.00 0.00 3.85
1972 13753 8.230486 GTCTAAAATGGATGGATATAAGCAACG 58.770 37.037 0.00 0.00 0.00 4.10
1973 13754 9.066892 TGTCTAAAATGGATGGATATAAGCAAC 57.933 33.333 0.00 0.00 0.00 4.17
1974 13755 9.066892 GTGTCTAAAATGGATGGATATAAGCAA 57.933 33.333 0.00 0.00 0.00 3.91
1975 13756 8.439971 AGTGTCTAAAATGGATGGATATAAGCA 58.560 33.333 0.00 0.00 0.00 3.91
1976 13757 8.854614 AGTGTCTAAAATGGATGGATATAAGC 57.145 34.615 0.00 0.00 0.00 3.09
1979 13760 9.923143 CGTTAGTGTCTAAAATGGATGGATATA 57.077 33.333 0.00 0.00 0.00 0.86
1980 13761 7.878127 CCGTTAGTGTCTAAAATGGATGGATAT 59.122 37.037 0.00 0.00 32.04 1.63
1981 13762 7.147620 ACCGTTAGTGTCTAAAATGGATGGATA 60.148 37.037 0.00 0.00 34.12 2.59
1982 13763 6.055588 CCGTTAGTGTCTAAAATGGATGGAT 58.944 40.000 0.00 0.00 32.04 3.41
1983 13764 5.046159 ACCGTTAGTGTCTAAAATGGATGGA 60.046 40.000 0.00 0.00 34.12 3.41
1984 13765 5.064707 CACCGTTAGTGTCTAAAATGGATGG 59.935 44.000 0.00 0.00 41.93 3.51
1985 13766 6.106877 CACCGTTAGTGTCTAAAATGGATG 57.893 41.667 0.00 0.00 41.93 3.51
1999 13780 3.385755 ACCTCACACTTAACACCGTTAGT 59.614 43.478 0.00 0.00 0.00 2.24
2000 13781 3.739300 CACCTCACACTTAACACCGTTAG 59.261 47.826 0.00 0.00 0.00 2.34
2001 13782 3.384146 TCACCTCACACTTAACACCGTTA 59.616 43.478 0.00 0.00 0.00 3.18
2002 13783 2.168936 TCACCTCACACTTAACACCGTT 59.831 45.455 0.00 0.00 0.00 4.44
2003 13784 1.758280 TCACCTCACACTTAACACCGT 59.242 47.619 0.00 0.00 0.00 4.83
2004 13785 2.519377 TCACCTCACACTTAACACCG 57.481 50.000 0.00 0.00 0.00 4.94
2005 13786 4.879545 TCTTTTCACCTCACACTTAACACC 59.120 41.667 0.00 0.00 0.00 4.16
2006 13787 5.585047 AGTCTTTTCACCTCACACTTAACAC 59.415 40.000 0.00 0.00 0.00 3.32
2007 13788 5.741011 AGTCTTTTCACCTCACACTTAACA 58.259 37.500 0.00 0.00 0.00 2.41
2008 13789 7.964604 ATAGTCTTTTCACCTCACACTTAAC 57.035 36.000 0.00 0.00 0.00 2.01
2009 13790 8.974060 AAATAGTCTTTTCACCTCACACTTAA 57.026 30.769 0.00 0.00 0.00 1.85
2010 13791 8.836413 CAAAATAGTCTTTTCACCTCACACTTA 58.164 33.333 0.00 0.00 0.00 2.24
2011 13792 7.682021 GCAAAATAGTCTTTTCACCTCACACTT 60.682 37.037 0.00 0.00 0.00 3.16
2012 13793 6.238759 GCAAAATAGTCTTTTCACCTCACACT 60.239 38.462 0.00 0.00 0.00 3.55
2013 13794 5.915196 GCAAAATAGTCTTTTCACCTCACAC 59.085 40.000 0.00 0.00 0.00 3.82
2014 13795 5.009610 GGCAAAATAGTCTTTTCACCTCACA 59.990 40.000 0.00 0.00 0.00 3.58
2015 13796 5.461526 GGCAAAATAGTCTTTTCACCTCAC 58.538 41.667 0.00 0.00 0.00 3.51
2016 13797 4.522789 GGGCAAAATAGTCTTTTCACCTCA 59.477 41.667 0.00 0.00 0.00 3.86
2017 13798 4.082190 GGGGCAAAATAGTCTTTTCACCTC 60.082 45.833 0.00 0.00 0.00 3.85
2018 13799 3.832490 GGGGCAAAATAGTCTTTTCACCT 59.168 43.478 0.00 0.00 0.00 4.00
2019 13800 3.832490 AGGGGCAAAATAGTCTTTTCACC 59.168 43.478 0.00 0.00 0.00 4.02
2020 13801 5.710567 ACTAGGGGCAAAATAGTCTTTTCAC 59.289 40.000 0.00 0.00 0.00 3.18
2021 13802 5.710099 CACTAGGGGCAAAATAGTCTTTTCA 59.290 40.000 0.00 0.00 0.00 2.69
2022 13803 5.393135 GCACTAGGGGCAAAATAGTCTTTTC 60.393 44.000 0.00 0.00 0.00 2.29
2023 13804 4.462834 GCACTAGGGGCAAAATAGTCTTTT 59.537 41.667 0.00 0.00 0.00 2.27
2024 13805 4.017126 GCACTAGGGGCAAAATAGTCTTT 58.983 43.478 0.00 0.00 0.00 2.52
2025 13806 3.010138 TGCACTAGGGGCAAAATAGTCTT 59.990 43.478 8.68 0.00 38.54 3.01
2026 13807 2.576191 TGCACTAGGGGCAAAATAGTCT 59.424 45.455 8.68 0.00 38.54 3.24
2027 13808 2.999331 TGCACTAGGGGCAAAATAGTC 58.001 47.619 8.68 0.00 38.54 2.59
2028 13809 3.669939 ATGCACTAGGGGCAAAATAGT 57.330 42.857 14.23 0.00 45.60 2.12
2029 13810 5.133221 AGTTATGCACTAGGGGCAAAATAG 58.867 41.667 14.23 0.00 45.60 1.73
2030 13811 5.124036 AGTTATGCACTAGGGGCAAAATA 57.876 39.130 14.23 1.86 45.60 1.40
2031 13812 3.981212 AGTTATGCACTAGGGGCAAAAT 58.019 40.909 14.23 7.66 45.60 1.82
2032 13813 3.449746 AGTTATGCACTAGGGGCAAAA 57.550 42.857 14.23 4.66 45.60 2.44
2033 13814 4.460263 CATAGTTATGCACTAGGGGCAAA 58.540 43.478 14.23 8.21 45.60 3.68
2034 13815 4.085357 CATAGTTATGCACTAGGGGCAA 57.915 45.455 14.23 0.00 45.60 4.52
2035 13816 3.769739 CATAGTTATGCACTAGGGGCA 57.230 47.619 12.87 12.87 41.54 5.36
2073 13854 1.797348 CGCGTGAACTGGTTGCTTTTT 60.797 47.619 0.00 0.00 0.00 1.94
2074 13855 0.248458 CGCGTGAACTGGTTGCTTTT 60.248 50.000 0.00 0.00 0.00 2.27
2075 13856 1.355210 CGCGTGAACTGGTTGCTTT 59.645 52.632 0.00 0.00 0.00 3.51
2076 13857 1.817941 ACGCGTGAACTGGTTGCTT 60.818 52.632 12.93 0.00 0.00 3.91
2077 13858 2.203015 ACGCGTGAACTGGTTGCT 60.203 55.556 12.93 0.00 0.00 3.91
2078 13859 2.052237 CACGCGTGAACTGGTTGC 60.052 61.111 34.93 0.00 0.00 4.17
2079 13860 0.098025 AAACACGCGTGAACTGGTTG 59.902 50.000 42.94 16.07 0.00 3.77
2080 13861 0.806241 AAAACACGCGTGAACTGGTT 59.194 45.000 42.94 23.90 0.00 3.67
2081 13862 1.595794 CTAAAACACGCGTGAACTGGT 59.404 47.619 42.94 22.92 0.00 4.00
2082 13863 1.070175 CCTAAAACACGCGTGAACTGG 60.070 52.381 42.94 29.80 0.00 4.00
2083 13864 1.070175 CCCTAAAACACGCGTGAACTG 60.070 52.381 42.94 25.92 0.00 3.16
2084 13865 1.202557 TCCCTAAAACACGCGTGAACT 60.203 47.619 42.94 26.88 0.00 3.01
2085 13866 1.219646 TCCCTAAAACACGCGTGAAC 58.780 50.000 42.94 0.00 0.00 3.18
2086 13867 1.801771 CATCCCTAAAACACGCGTGAA 59.198 47.619 42.94 23.50 0.00 3.18
2087 13868 1.270412 ACATCCCTAAAACACGCGTGA 60.270 47.619 42.94 21.54 0.00 4.35
2088 13869 1.153353 ACATCCCTAAAACACGCGTG 58.847 50.000 35.99 35.99 0.00 5.34
2089 13870 1.533731 CAACATCCCTAAAACACGCGT 59.466 47.619 5.58 5.58 0.00 6.01
2090 13871 1.801771 TCAACATCCCTAAAACACGCG 59.198 47.619 3.53 3.53 0.00 6.01
2091 13872 3.561503 GTTCAACATCCCTAAAACACGC 58.438 45.455 0.00 0.00 0.00 5.34
2092 13873 3.364565 CGGTTCAACATCCCTAAAACACG 60.365 47.826 0.00 0.00 0.00 4.49
2093 13874 3.816523 TCGGTTCAACATCCCTAAAACAC 59.183 43.478 0.00 0.00 0.00 3.32
2094 13875 4.088056 TCGGTTCAACATCCCTAAAACA 57.912 40.909 0.00 0.00 0.00 2.83
2095 13876 4.674362 GCATCGGTTCAACATCCCTAAAAC 60.674 45.833 0.00 0.00 0.00 2.43
2096 13877 3.442273 GCATCGGTTCAACATCCCTAAAA 59.558 43.478 0.00 0.00 0.00 1.52
2097 13878 3.013921 GCATCGGTTCAACATCCCTAAA 58.986 45.455 0.00 0.00 0.00 1.85
2098 13879 2.026729 TGCATCGGTTCAACATCCCTAA 60.027 45.455 0.00 0.00 0.00 2.69
2099 13880 1.557371 TGCATCGGTTCAACATCCCTA 59.443 47.619 0.00 0.00 0.00 3.53
2100 13881 0.327924 TGCATCGGTTCAACATCCCT 59.672 50.000 0.00 0.00 0.00 4.20
2101 13882 0.451783 GTGCATCGGTTCAACATCCC 59.548 55.000 0.00 0.00 0.00 3.85
2102 13883 1.164411 TGTGCATCGGTTCAACATCC 58.836 50.000 0.00 0.00 0.00 3.51
2103 13884 2.162208 ACATGTGCATCGGTTCAACATC 59.838 45.455 0.00 0.00 0.00 3.06
2104 13885 2.161855 ACATGTGCATCGGTTCAACAT 58.838 42.857 0.00 0.00 0.00 2.71
2105 13886 1.603456 ACATGTGCATCGGTTCAACA 58.397 45.000 0.00 0.00 0.00 3.33
2106 13887 5.007626 ACATATACATGTGCATCGGTTCAAC 59.992 40.000 9.11 0.00 43.89 3.18
2107 13888 5.122519 ACATATACATGTGCATCGGTTCAA 58.877 37.500 9.11 0.00 43.89 2.69
2108 13889 4.702831 ACATATACATGTGCATCGGTTCA 58.297 39.130 9.11 0.00 43.89 3.18
2109 13890 6.673076 GCATACATATACATGTGCATCGGTTC 60.673 42.308 9.11 0.00 45.17 3.62
2110 13891 5.122239 GCATACATATACATGTGCATCGGTT 59.878 40.000 9.11 0.00 45.17 4.44
2111 13892 4.631377 GCATACATATACATGTGCATCGGT 59.369 41.667 9.11 1.99 45.17 4.69
2112 13893 4.872124 AGCATACATATACATGTGCATCGG 59.128 41.667 9.11 0.00 45.17 4.18
2113 13894 5.006068 GGAGCATACATATACATGTGCATCG 59.994 44.000 9.11 0.00 45.17 3.84
2114 13895 5.876460 TGGAGCATACATATACATGTGCATC 59.124 40.000 9.11 0.97 45.17 3.91
2115 13896 5.807909 TGGAGCATACATATACATGTGCAT 58.192 37.500 9.11 0.00 45.17 3.96
2116 13897 5.226194 TGGAGCATACATATACATGTGCA 57.774 39.130 9.11 0.00 45.17 4.57
2117 13898 6.149973 ACATTGGAGCATACATATACATGTGC 59.850 38.462 9.11 0.00 45.17 4.57
2118 13899 7.677454 ACATTGGAGCATACATATACATGTG 57.323 36.000 9.11 0.00 45.17 3.21
2120 13901 8.448615 CAGAACATTGGAGCATACATATACATG 58.551 37.037 0.00 0.00 38.21 3.21
2121 13902 8.159447 ACAGAACATTGGAGCATACATATACAT 58.841 33.333 0.00 0.00 0.00 2.29
2122 13903 7.508687 ACAGAACATTGGAGCATACATATACA 58.491 34.615 0.00 0.00 0.00 2.29
2123 13904 7.969536 ACAGAACATTGGAGCATACATATAC 57.030 36.000 0.00 0.00 0.00 1.47
2124 13905 7.661437 GGAACAGAACATTGGAGCATACATATA 59.339 37.037 0.00 0.00 0.00 0.86
2125 13906 6.488006 GGAACAGAACATTGGAGCATACATAT 59.512 38.462 0.00 0.00 0.00 1.78
2126 13907 5.822519 GGAACAGAACATTGGAGCATACATA 59.177 40.000 0.00 0.00 0.00 2.29
2127 13908 4.641989 GGAACAGAACATTGGAGCATACAT 59.358 41.667 0.00 0.00 0.00 2.29
2128 13909 4.009675 GGAACAGAACATTGGAGCATACA 58.990 43.478 0.00 0.00 0.00 2.29
2129 13910 4.265073 AGGAACAGAACATTGGAGCATAC 58.735 43.478 0.00 0.00 0.00 2.39
2130 13911 4.574674 AGGAACAGAACATTGGAGCATA 57.425 40.909 0.00 0.00 0.00 3.14
2131 13912 3.446442 AGGAACAGAACATTGGAGCAT 57.554 42.857 0.00 0.00 0.00 3.79
2132 13913 2.957402 AGGAACAGAACATTGGAGCA 57.043 45.000 0.00 0.00 0.00 4.26
2133 13914 4.579869 TCTAAGGAACAGAACATTGGAGC 58.420 43.478 0.00 0.00 0.00 4.70
2134 13915 8.428063 AGATATCTAAGGAACAGAACATTGGAG 58.572 37.037 2.53 0.00 0.00 3.86
2135 13916 8.206867 CAGATATCTAAGGAACAGAACATTGGA 58.793 37.037 4.54 0.00 0.00 3.53
2136 13917 7.443575 CCAGATATCTAAGGAACAGAACATTGG 59.556 40.741 4.54 0.00 0.00 3.16
2137 13918 7.989741 ACCAGATATCTAAGGAACAGAACATTG 59.010 37.037 14.49 0.00 0.00 2.82
2138 13919 8.095452 ACCAGATATCTAAGGAACAGAACATT 57.905 34.615 14.49 0.00 0.00 2.71
2139 13920 7.566879 AGACCAGATATCTAAGGAACAGAACAT 59.433 37.037 14.49 0.00 0.00 2.71
2140 13921 6.897966 AGACCAGATATCTAAGGAACAGAACA 59.102 38.462 14.49 0.00 0.00 3.18
2141 13922 7.147811 ACAGACCAGATATCTAAGGAACAGAAC 60.148 40.741 14.49 0.41 0.00 3.01
2142 13923 6.897966 ACAGACCAGATATCTAAGGAACAGAA 59.102 38.462 14.49 0.00 0.00 3.02
2143 13924 6.322456 CACAGACCAGATATCTAAGGAACAGA 59.678 42.308 14.49 0.00 0.00 3.41
2144 13925 6.511416 CACAGACCAGATATCTAAGGAACAG 58.489 44.000 14.49 8.24 0.00 3.16
2145 13926 5.163405 GCACAGACCAGATATCTAAGGAACA 60.163 44.000 14.49 0.00 0.00 3.18
2146 13927 5.293560 GCACAGACCAGATATCTAAGGAAC 58.706 45.833 14.49 8.69 0.00 3.62
2147 13928 4.038042 CGCACAGACCAGATATCTAAGGAA 59.962 45.833 14.49 0.00 0.00 3.36
2148 13929 3.570125 CGCACAGACCAGATATCTAAGGA 59.430 47.826 14.49 0.00 0.00 3.36
2149 13930 3.319405 ACGCACAGACCAGATATCTAAGG 59.681 47.826 4.54 6.23 0.00 2.69
2150 13931 4.202060 ACACGCACAGACCAGATATCTAAG 60.202 45.833 4.54 2.64 0.00 2.18
2151 13932 3.699538 ACACGCACAGACCAGATATCTAA 59.300 43.478 4.54 0.00 0.00 2.10
2152 13933 3.288092 ACACGCACAGACCAGATATCTA 58.712 45.455 4.54 0.00 0.00 1.98
2153 13934 2.103373 ACACGCACAGACCAGATATCT 58.897 47.619 0.00 0.00 0.00 1.98
2154 13935 2.586258 ACACGCACAGACCAGATATC 57.414 50.000 0.00 0.00 0.00 1.63
2155 13936 4.433615 CTTTACACGCACAGACCAGATAT 58.566 43.478 0.00 0.00 0.00 1.63
2156 13937 3.368013 CCTTTACACGCACAGACCAGATA 60.368 47.826 0.00 0.00 0.00 1.98
2157 13938 2.612972 CCTTTACACGCACAGACCAGAT 60.613 50.000 0.00 0.00 0.00 2.90
2158 13939 1.270094 CCTTTACACGCACAGACCAGA 60.270 52.381 0.00 0.00 0.00 3.86
2159 13940 1.148310 CCTTTACACGCACAGACCAG 58.852 55.000 0.00 0.00 0.00 4.00
2160 13941 0.882927 GCCTTTACACGCACAGACCA 60.883 55.000 0.00 0.00 0.00 4.02
2161 13942 1.574702 GGCCTTTACACGCACAGACC 61.575 60.000 0.00 0.00 0.00 3.85
2162 13943 0.882927 TGGCCTTTACACGCACAGAC 60.883 55.000 3.32 0.00 0.00 3.51
2163 13944 0.036164 ATGGCCTTTACACGCACAGA 59.964 50.000 3.32 0.00 0.00 3.41
2164 13945 1.396996 GTATGGCCTTTACACGCACAG 59.603 52.381 3.32 0.00 0.00 3.66
2165 13946 1.270893 TGTATGGCCTTTACACGCACA 60.271 47.619 13.19 0.44 0.00 4.57
2166 13947 1.444836 TGTATGGCCTTTACACGCAC 58.555 50.000 13.19 0.00 0.00 5.34
2167 13948 2.186532 TTGTATGGCCTTTACACGCA 57.813 45.000 15.90 2.91 29.60 5.24
2168 13949 3.239254 GTTTTGTATGGCCTTTACACGC 58.761 45.455 15.90 7.89 29.60 5.34
2169 13950 4.491234 TGTTTTGTATGGCCTTTACACG 57.509 40.909 15.90 0.00 29.60 4.49
2170 13951 6.019779 TGATGTTTTGTATGGCCTTTACAC 57.980 37.500 15.90 8.04 29.60 2.90
2171 13952 6.007076 TCTGATGTTTTGTATGGCCTTTACA 58.993 36.000 13.19 13.19 0.00 2.41
2172 13953 6.509418 TCTGATGTTTTGTATGGCCTTTAC 57.491 37.500 3.32 6.90 0.00 2.01
2173 13954 6.719370 AGTTCTGATGTTTTGTATGGCCTTTA 59.281 34.615 3.32 0.00 0.00 1.85
2174 13955 5.539955 AGTTCTGATGTTTTGTATGGCCTTT 59.460 36.000 3.32 0.00 0.00 3.11
2175 13956 5.079643 AGTTCTGATGTTTTGTATGGCCTT 58.920 37.500 3.32 0.00 0.00 4.35
2176 13957 4.666512 AGTTCTGATGTTTTGTATGGCCT 58.333 39.130 3.32 0.00 0.00 5.19
2177 13958 5.163513 CAAGTTCTGATGTTTTGTATGGCC 58.836 41.667 0.00 0.00 0.00 5.36
2178 13959 5.772521 ACAAGTTCTGATGTTTTGTATGGC 58.227 37.500 0.00 0.00 30.79 4.40
2179 13960 8.017373 CAGTACAAGTTCTGATGTTTTGTATGG 58.983 37.037 1.10 0.00 36.82 2.74
2180 13961 8.017373 CCAGTACAAGTTCTGATGTTTTGTATG 58.983 37.037 8.21 0.00 36.82 2.39
2181 13962 7.936847 TCCAGTACAAGTTCTGATGTTTTGTAT 59.063 33.333 8.21 0.00 36.82 2.29
2182 13963 7.276658 TCCAGTACAAGTTCTGATGTTTTGTA 58.723 34.615 8.21 0.00 34.22 2.41
2183 13964 6.119536 TCCAGTACAAGTTCTGATGTTTTGT 58.880 36.000 8.21 0.00 36.15 2.83
2184 13965 6.618287 TCCAGTACAAGTTCTGATGTTTTG 57.382 37.500 8.21 0.00 34.02 2.44
2185 13966 9.167311 GATATCCAGTACAAGTTCTGATGTTTT 57.833 33.333 8.21 0.00 34.02 2.43
2186 13967 7.492669 CGATATCCAGTACAAGTTCTGATGTTT 59.507 37.037 8.21 0.00 34.02 2.83
2189 13970 6.739112 TCGATATCCAGTACAAGTTCTGATG 58.261 40.000 8.21 0.00 34.02 3.07
2190 13971 6.961360 TCGATATCCAGTACAAGTTCTGAT 57.039 37.500 8.21 3.73 34.02 2.90
2194 13975 6.978659 TGTTCATCGATATCCAGTACAAGTTC 59.021 38.462 0.00 0.00 0.00 3.01
2195 13976 6.873997 TGTTCATCGATATCCAGTACAAGTT 58.126 36.000 0.00 0.00 0.00 2.66
2197 13978 7.953158 ATTGTTCATCGATATCCAGTACAAG 57.047 36.000 0.00 0.00 0.00 3.16
2199 13980 7.947282 TGTATTGTTCATCGATATCCAGTACA 58.053 34.615 15.46 15.46 0.00 2.90
2200 13981 8.812147 TTGTATTGTTCATCGATATCCAGTAC 57.188 34.615 0.00 6.81 0.00 2.73
2205 13986 8.771920 TGGTATTGTATTGTTCATCGATATCC 57.228 34.615 0.00 0.00 0.00 2.59


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.