Multiple sequence alignment - TraesCS2D01G563400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G563400 chr2D 100.000 2708 0 0 1 2708 634659812 634657105 0.000000e+00 5001.0
1 TraesCS2D01G563400 chr2D 81.327 1130 95 63 727 1778 634482709 634481618 0.000000e+00 811.0
2 TraesCS2D01G563400 chr2D 87.838 666 48 17 1138 1776 634575362 634574703 0.000000e+00 750.0
3 TraesCS2D01G563400 chr2D 85.828 628 64 15 1169 1782 634556409 634555793 0.000000e+00 643.0
4 TraesCS2D01G563400 chr2D 94.323 229 11 2 2481 2708 634655435 634655662 1.540000e-92 350.0
5 TraesCS2D01G563400 chr2D 78.182 440 50 26 474 883 634576023 634575600 3.480000e-59 239.0
6 TraesCS2D01G563400 chr2D 83.262 233 31 7 2481 2708 628602788 628603017 9.830000e-50 207.0
7 TraesCS2D01G563400 chr2D 89.375 160 13 4 2552 2708 628603027 628603185 5.910000e-47 198.0
8 TraesCS2D01G563400 chr2D 90.123 81 6 1 152 232 634483380 634483302 1.330000e-18 104.0
9 TraesCS2D01G563400 chr2D 79.290 169 11 14 108 258 634557657 634557495 2.220000e-16 97.1
10 TraesCS2D01G563400 chr2A 88.291 1580 80 41 369 1929 778759467 778760960 0.000000e+00 1796.0
11 TraesCS2D01G563400 chr2A 87.799 795 44 22 1138 1906 778789062 778789829 0.000000e+00 881.0
12 TraesCS2D01G563400 chr2A 79.302 1232 122 61 756 1928 778876133 778877290 0.000000e+00 739.0
13 TraesCS2D01G563400 chr2A 81.215 905 85 42 939 1782 778914677 778915557 0.000000e+00 651.0
14 TraesCS2D01G563400 chr2A 86.767 597 60 12 1194 1782 778827501 778828086 0.000000e+00 647.0
15 TraesCS2D01G563400 chr2A 87.554 233 4 6 1 208 778759004 778759236 2.080000e-61 246.0
16 TraesCS2D01G563400 chr2A 76.309 401 40 25 1550 1928 778814333 778814700 2.160000e-36 163.0
17 TraesCS2D01G563400 chr2A 77.711 332 25 28 727 1036 778827030 778827334 1.000000e-34 158.0
18 TraesCS2D01G563400 chr2A 95.294 85 4 0 287 371 778759276 778759360 4.700000e-28 135.0
19 TraesCS2D01G563400 chr2A 92.727 55 4 0 152 206 778913781 778913835 2.240000e-11 80.5
20 TraesCS2D01G563400 chr2B 88.707 1408 63 39 433 1827 777659448 777658124 0.000000e+00 1631.0
21 TraesCS2D01G563400 chr2B 88.098 857 39 29 575 1427 777635559 777634762 0.000000e+00 959.0
22 TraesCS2D01G563400 chr2B 81.366 1025 98 40 963 1928 777549559 777548569 0.000000e+00 749.0
23 TraesCS2D01G563400 chr2B 77.282 1523 165 85 482 1928 777619404 777617987 0.000000e+00 728.0
24 TraesCS2D01G563400 chr2B 92.442 344 26 0 1423 1766 777634018 777633675 2.420000e-135 492.0
25 TraesCS2D01G563400 chr2B 89.573 211 13 4 369 575 777642807 777642602 2.670000e-65 259.0
26 TraesCS2D01G563400 chr2B 81.682 333 25 9 1 299 777643291 777642961 7.490000e-61 244.0
27 TraesCS2D01G563400 chr2B 84.932 219 5 12 71 272 777659815 777659608 2.130000e-46 196.0
28 TraesCS2D01G563400 chr2B 91.525 118 8 2 2474 2590 23003046 23002930 7.760000e-36 161.0
29 TraesCS2D01G563400 chr2B 82.796 186 10 7 1764 1929 777632433 777632250 2.170000e-31 147.0
30 TraesCS2D01G563400 chr2B 98.551 69 0 1 2 69 777659911 777659843 1.320000e-23 121.0
31 TraesCS2D01G563400 chr2B 91.892 74 5 1 106 179 777619917 777619845 4.770000e-18 102.0
32 TraesCS2D01G563400 chr2B 91.935 62 5 0 152 213 777522908 777522847 1.340000e-13 87.9
33 TraesCS2D01G563400 chr5D 96.809 282 7 2 2156 2437 481252341 481252620 1.140000e-128 470.0
34 TraesCS2D01G563400 chr5A 87.059 425 29 16 2038 2437 626519068 626519491 8.840000e-125 457.0
35 TraesCS2D01G563400 chr5A 86.079 431 33 12 2032 2437 626451941 626452369 3.200000e-119 438.0
36 TraesCS2D01G563400 chr5A 85.847 431 35 17 2032 2437 626615549 626615978 4.140000e-118 435.0
37 TraesCS2D01G563400 chr5A 85.847 431 35 8 2032 2437 627675434 627675863 4.140000e-118 435.0
38 TraesCS2D01G563400 chr6D 95.105 286 10 2 2155 2437 37226850 37226566 5.320000e-122 448.0
39 TraesCS2D01G563400 chr6D 82.479 234 35 5 2479 2708 45665684 45665453 1.640000e-47 200.0
40 TraesCS2D01G563400 chr7B 86.073 438 28 12 2032 2437 386693489 386693053 8.900000e-120 440.0
41 TraesCS2D01G563400 chr7B 85.845 438 29 15 2032 2437 386694781 386694345 4.140000e-118 435.0
42 TraesCS2D01G563400 chr7B 87.755 98 11 1 2032 2129 193959137 193959041 2.200000e-21 113.0
43 TraesCS2D01G563400 chr3B 90.332 331 18 9 2119 2437 814738409 814738737 3.220000e-114 422.0
44 TraesCS2D01G563400 chr3B 86.869 99 13 0 2031 2129 354976065 354975967 7.930000e-21 111.0
45 TraesCS2D01G563400 chr3D 94.760 229 11 1 2481 2708 80632414 80632186 3.320000e-94 355.0
46 TraesCS2D01G563400 chr3D 93.897 213 12 1 2481 2692 610888009 610887797 1.210000e-83 320.0
47 TraesCS2D01G563400 chr3D 91.228 228 11 4 2481 2708 80630636 80630854 4.380000e-78 302.0
48 TraesCS2D01G563400 chr3D 84.962 133 19 1 2031 2162 30051355 30051223 1.690000e-27 134.0
49 TraesCS2D01G563400 chrUn 92.793 111 6 2 2481 2590 470183912 470184021 2.790000e-35 159.0
50 TraesCS2D01G563400 chr6A 87.692 130 13 3 2462 2590 589221954 589221827 6.040000e-32 148.0
51 TraesCS2D01G563400 chr4B 80.556 180 27 6 2468 2642 628078141 628077965 6.080000e-27 132.0
52 TraesCS2D01G563400 chr1B 90.526 95 9 0 2032 2126 95405577 95405671 2.830000e-25 126.0
53 TraesCS2D01G563400 chr7D 89.691 97 10 0 2030 2126 64493739 64493835 1.020000e-24 124.0
54 TraesCS2D01G563400 chr7D 87.097 93 12 0 2034 2126 49428797 49428889 3.690000e-19 106.0
55 TraesCS2D01G563400 chr7D 87.097 93 12 0 2034 2126 49430099 49430191 3.690000e-19 106.0
56 TraesCS2D01G563400 chr1A 87.879 99 12 0 2031 2129 557136112 557136014 1.700000e-22 117.0
57 TraesCS2D01G563400 chr5B 88.889 90 9 1 2032 2120 549561201 549561290 2.850000e-20 110.0
58 TraesCS2D01G563400 chr3A 100.000 28 0 0 1997 2024 10269547 10269520 5.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G563400 chr2D 634657105 634659812 2707 True 5001.000000 5001 100.000000 1 2708 1 chr2D.!!$R1 2707
1 TraesCS2D01G563400 chr2D 634574703 634576023 1320 True 494.500000 750 83.010000 474 1776 2 chr2D.!!$R4 1302
2 TraesCS2D01G563400 chr2D 634481618 634483380 1762 True 457.500000 811 85.725000 152 1778 2 chr2D.!!$R2 1626
3 TraesCS2D01G563400 chr2D 634555793 634557657 1864 True 370.050000 643 82.559000 108 1782 2 chr2D.!!$R3 1674
4 TraesCS2D01G563400 chr2A 778789062 778789829 767 False 881.000000 881 87.799000 1138 1906 1 chr2A.!!$F1 768
5 TraesCS2D01G563400 chr2A 778876133 778877290 1157 False 739.000000 739 79.302000 756 1928 1 chr2A.!!$F3 1172
6 TraesCS2D01G563400 chr2A 778759004 778760960 1956 False 725.666667 1796 90.379667 1 1929 3 chr2A.!!$F4 1928
7 TraesCS2D01G563400 chr2A 778827030 778828086 1056 False 402.500000 647 82.239000 727 1782 2 chr2A.!!$F5 1055
8 TraesCS2D01G563400 chr2A 778913781 778915557 1776 False 365.750000 651 86.971000 152 1782 2 chr2A.!!$F6 1630
9 TraesCS2D01G563400 chr2B 777548569 777549559 990 True 749.000000 749 81.366000 963 1928 1 chr2B.!!$R3 965
10 TraesCS2D01G563400 chr2B 777658124 777659911 1787 True 649.333333 1631 90.730000 2 1827 3 chr2B.!!$R7 1825
11 TraesCS2D01G563400 chr2B 777632250 777635559 3309 True 532.666667 959 87.778667 575 1929 3 chr2B.!!$R5 1354
12 TraesCS2D01G563400 chr2B 777617987 777619917 1930 True 415.000000 728 84.587000 106 1928 2 chr2B.!!$R4 1822
13 TraesCS2D01G563400 chr2B 777642602 777643291 689 True 251.500000 259 85.627500 1 575 2 chr2B.!!$R6 574
14 TraesCS2D01G563400 chr7B 386693053 386694781 1728 True 437.500000 440 85.959000 2032 2437 2 chr7B.!!$R2 405

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
909 1538 0.459237 GGTGATCAGACTGACCGCTG 60.459 60.0 7.47 0.0 0.0 5.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2066 4932 0.109226 CTTCCACCTCCGTTCGAGTC 60.109 60.0 0.0 0.0 36.82 3.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
430 690 2.291365 TCGCAAGATTCCATCCACATG 58.709 47.619 0.00 0.00 45.01 3.21
431 691 2.093021 TCGCAAGATTCCATCCACATGA 60.093 45.455 0.00 0.00 45.01 3.07
898 1527 2.437200 GCTAGCTAGCTGGTGATCAG 57.563 55.000 33.71 15.20 45.62 2.90
899 1528 1.959985 GCTAGCTAGCTGGTGATCAGA 59.040 52.381 33.71 2.47 46.18 3.27
900 1529 2.288152 GCTAGCTAGCTGGTGATCAGAC 60.288 54.545 33.71 4.95 46.18 3.51
901 1530 2.157640 AGCTAGCTGGTGATCAGACT 57.842 50.000 18.57 0.00 46.18 3.24
903 1532 1.753649 GCTAGCTGGTGATCAGACTGA 59.246 52.381 7.80 7.80 46.18 3.41
904 1533 2.481104 GCTAGCTGGTGATCAGACTGAC 60.481 54.545 7.47 2.84 46.18 3.51
909 1538 0.459237 GGTGATCAGACTGACCGCTG 60.459 60.000 7.47 0.00 0.00 5.18
910 1539 1.080995 GTGATCAGACTGACCGCTGC 61.081 60.000 7.47 0.00 32.27 5.25
911 1540 1.216444 GATCAGACTGACCGCTGCA 59.784 57.895 7.47 0.00 32.27 4.41
912 1541 0.805322 GATCAGACTGACCGCTGCAG 60.805 60.000 10.11 10.11 39.26 4.41
913 1542 2.236223 ATCAGACTGACCGCTGCAGG 62.236 60.000 17.12 2.55 37.69 4.85
914 1543 4.385405 AGACTGACCGCTGCAGGC 62.385 66.667 17.12 6.97 41.81 4.85
934 1563 0.582005 GGAACGCGAATGTAGATGCC 59.418 55.000 15.93 0.00 0.00 4.40
935 1564 1.571919 GAACGCGAATGTAGATGCCT 58.428 50.000 15.93 0.00 0.00 4.75
936 1565 1.933853 GAACGCGAATGTAGATGCCTT 59.066 47.619 15.93 0.00 0.00 4.35
937 1566 2.024176 ACGCGAATGTAGATGCCTTT 57.976 45.000 15.93 0.00 0.00 3.11
960 1592 3.051479 CGTTTTAAGCCGGCCGGT 61.051 61.111 42.53 28.17 37.65 5.28
988 1628 2.816958 CATGCGCTGCTCCGTTCT 60.817 61.111 9.73 0.00 0.00 3.01
989 1629 2.046892 ATGCGCTGCTCCGTTCTT 60.047 55.556 9.73 0.00 0.00 2.52
990 1630 2.103042 ATGCGCTGCTCCGTTCTTC 61.103 57.895 9.73 0.00 0.00 2.87
998 1638 1.301401 CTCCGTTCTTCCCGCACAA 60.301 57.895 0.00 0.00 0.00 3.33
1113 1803 0.036577 ACTGCATGCTCACTCTGTCC 60.037 55.000 20.33 0.00 0.00 4.02
1131 1829 4.069232 CCTCTCCGGCAAGCGACA 62.069 66.667 0.00 0.00 0.00 4.35
1199 1934 1.072505 TGACCAAGAAGAACGGCCC 59.927 57.895 0.00 0.00 0.00 5.80
1284 2028 4.202172 TGCTACTACAACAACTACAGCACA 60.202 41.667 0.00 0.00 33.15 4.57
1285 2029 4.929808 GCTACTACAACAACTACAGCACAT 59.070 41.667 0.00 0.00 0.00 3.21
1473 3007 3.871574 GAGACGCGCGCTCTCTCT 61.872 66.667 34.40 28.11 32.75 3.10
1504 3038 1.215647 CCAGTCTTCCCGTTCCTCG 59.784 63.158 0.00 0.00 39.52 4.63
1548 3082 0.108615 CACAGTTCGATCTCGGGCTT 60.109 55.000 0.00 0.00 40.29 4.35
1551 3085 1.218316 GTTCGATCTCGGGCTTGGT 59.782 57.895 0.00 0.00 40.29 3.67
1797 4623 3.729462 CGATCGAGGCTAATAGTGCTAGC 60.729 52.174 10.26 8.10 40.93 3.42
1836 4662 5.876612 ACGTCTCCTGTTTACAGTAGTAG 57.123 43.478 8.91 4.43 42.27 2.57
1838 4664 6.179040 ACGTCTCCTGTTTACAGTAGTAGAT 58.821 40.000 8.91 0.00 42.27 1.98
1866 4727 7.639113 TCTTTTTGACCACACTAATTGTCTT 57.361 32.000 0.00 0.00 35.67 3.01
1867 4728 8.062065 TCTTTTTGACCACACTAATTGTCTTT 57.938 30.769 0.00 0.00 35.67 2.52
1897 4759 3.923461 GCTCGATGCATCTCAGGTTATAC 59.077 47.826 23.73 3.19 42.31 1.47
1929 4795 8.314021 TGTATATATGGATGTGGCTAGAAAGTG 58.686 37.037 0.00 0.00 0.00 3.16
1930 4796 5.636903 ATATGGATGTGGCTAGAAAGTGT 57.363 39.130 0.00 0.00 0.00 3.55
1931 4797 3.788227 TGGATGTGGCTAGAAAGTGTT 57.212 42.857 0.00 0.00 0.00 3.32
1932 4798 3.411446 TGGATGTGGCTAGAAAGTGTTG 58.589 45.455 0.00 0.00 0.00 3.33
1933 4799 2.749621 GGATGTGGCTAGAAAGTGTTGG 59.250 50.000 0.00 0.00 0.00 3.77
1934 4800 3.559171 GGATGTGGCTAGAAAGTGTTGGA 60.559 47.826 0.00 0.00 0.00 3.53
1935 4801 3.569194 TGTGGCTAGAAAGTGTTGGAA 57.431 42.857 0.00 0.00 0.00 3.53
1936 4802 4.098914 TGTGGCTAGAAAGTGTTGGAAT 57.901 40.909 0.00 0.00 0.00 3.01
1937 4803 4.469657 TGTGGCTAGAAAGTGTTGGAATT 58.530 39.130 0.00 0.00 0.00 2.17
1938 4804 4.892934 TGTGGCTAGAAAGTGTTGGAATTT 59.107 37.500 0.00 0.00 0.00 1.82
1939 4805 5.362430 TGTGGCTAGAAAGTGTTGGAATTTT 59.638 36.000 0.00 0.00 0.00 1.82
1940 4806 5.691754 GTGGCTAGAAAGTGTTGGAATTTTG 59.308 40.000 0.00 0.00 0.00 2.44
1941 4807 4.686091 GGCTAGAAAGTGTTGGAATTTTGC 59.314 41.667 0.00 0.00 0.00 3.68
1942 4808 4.686091 GCTAGAAAGTGTTGGAATTTTGCC 59.314 41.667 0.00 0.00 0.00 4.52
1943 4809 4.071961 AGAAAGTGTTGGAATTTTGCCC 57.928 40.909 0.00 0.00 0.00 5.36
1944 4810 3.711190 AGAAAGTGTTGGAATTTTGCCCT 59.289 39.130 0.00 0.00 0.00 5.19
1945 4811 3.751479 AAGTGTTGGAATTTTGCCCTC 57.249 42.857 0.00 0.00 0.00 4.30
1946 4812 1.970640 AGTGTTGGAATTTTGCCCTCC 59.029 47.619 0.00 0.00 0.00 4.30
1947 4813 0.965439 TGTTGGAATTTTGCCCTCCG 59.035 50.000 0.00 0.00 31.37 4.63
1948 4814 0.246360 GTTGGAATTTTGCCCTCCGG 59.754 55.000 0.00 0.00 31.37 5.14
1949 4815 0.113385 TTGGAATTTTGCCCTCCGGA 59.887 50.000 2.93 2.93 31.37 5.14
1950 4816 0.334676 TGGAATTTTGCCCTCCGGAT 59.665 50.000 3.57 0.00 31.37 4.18
1951 4817 1.032794 GGAATTTTGCCCTCCGGATC 58.967 55.000 3.57 0.00 0.00 3.36
1952 4818 1.684869 GGAATTTTGCCCTCCGGATCA 60.685 52.381 3.57 0.03 0.00 2.92
1953 4819 1.405463 GAATTTTGCCCTCCGGATCAC 59.595 52.381 3.57 0.00 0.00 3.06
1954 4820 0.331278 ATTTTGCCCTCCGGATCACA 59.669 50.000 3.57 0.00 0.00 3.58
1955 4821 0.331278 TTTTGCCCTCCGGATCACAT 59.669 50.000 3.57 0.00 0.00 3.21
1956 4822 0.107214 TTTGCCCTCCGGATCACATC 60.107 55.000 3.57 0.00 0.00 3.06
1957 4823 1.271127 TTGCCCTCCGGATCACATCA 61.271 55.000 3.57 0.00 0.00 3.07
1958 4824 1.271127 TGCCCTCCGGATCACATCAA 61.271 55.000 3.57 0.00 0.00 2.57
1959 4825 0.107214 GCCCTCCGGATCACATCAAA 60.107 55.000 3.57 0.00 0.00 2.69
1960 4826 1.477558 GCCCTCCGGATCACATCAAAT 60.478 52.381 3.57 0.00 0.00 2.32
1961 4827 2.498167 CCCTCCGGATCACATCAAATC 58.502 52.381 3.57 0.00 0.00 2.17
1962 4828 2.158769 CCCTCCGGATCACATCAAATCA 60.159 50.000 3.57 0.00 0.00 2.57
1963 4829 2.874701 CCTCCGGATCACATCAAATCAC 59.125 50.000 3.57 0.00 0.00 3.06
1964 4830 3.534554 CTCCGGATCACATCAAATCACA 58.465 45.455 3.57 0.00 0.00 3.58
1965 4831 3.270027 TCCGGATCACATCAAATCACAC 58.730 45.455 0.00 0.00 0.00 3.82
1966 4832 3.009026 CCGGATCACATCAAATCACACA 58.991 45.455 0.00 0.00 0.00 3.72
1967 4833 3.439825 CCGGATCACATCAAATCACACAA 59.560 43.478 0.00 0.00 0.00 3.33
1968 4834 4.082841 CCGGATCACATCAAATCACACAAA 60.083 41.667 0.00 0.00 0.00 2.83
1969 4835 4.853196 CGGATCACATCAAATCACACAAAC 59.147 41.667 0.00 0.00 0.00 2.93
1970 4836 5.562501 CGGATCACATCAAATCACACAAACA 60.563 40.000 0.00 0.00 0.00 2.83
1971 4837 5.630680 GGATCACATCAAATCACACAAACAC 59.369 40.000 0.00 0.00 0.00 3.32
1972 4838 5.573337 TCACATCAAATCACACAAACACA 57.427 34.783 0.00 0.00 0.00 3.72
1973 4839 5.339177 TCACATCAAATCACACAAACACAC 58.661 37.500 0.00 0.00 0.00 3.82
1974 4840 4.204775 CACATCAAATCACACAAACACACG 59.795 41.667 0.00 0.00 0.00 4.49
1975 4841 3.412981 TCAAATCACACAAACACACGG 57.587 42.857 0.00 0.00 0.00 4.94
1976 4842 2.098280 TCAAATCACACAAACACACGGG 59.902 45.455 0.00 0.00 0.00 5.28
1977 4843 0.383949 AATCACACAAACACACGGGC 59.616 50.000 0.00 0.00 0.00 6.13
1978 4844 0.749818 ATCACACAAACACACGGGCA 60.750 50.000 0.00 0.00 0.00 5.36
1979 4845 1.226547 CACACAAACACACGGGCAC 60.227 57.895 0.00 0.00 0.00 5.01
1981 4847 2.125065 ACAAACACACGGGCACGA 60.125 55.556 19.19 0.00 44.60 4.35
1982 4848 1.745864 ACAAACACACGGGCACGAA 60.746 52.632 19.19 0.00 44.60 3.85
1983 4849 1.306642 ACAAACACACGGGCACGAAA 61.307 50.000 19.19 0.00 44.60 3.46
1984 4850 0.179161 CAAACACACGGGCACGAAAA 60.179 50.000 19.19 0.00 44.60 2.29
1985 4851 0.526662 AAACACACGGGCACGAAAAA 59.473 45.000 19.19 0.00 44.60 1.94
1986 4852 0.179158 AACACACGGGCACGAAAAAC 60.179 50.000 19.19 0.00 44.60 2.43
1987 4853 1.027792 ACACACGGGCACGAAAAACT 61.028 50.000 19.19 0.00 44.60 2.66
1988 4854 0.938713 CACACGGGCACGAAAAACTA 59.061 50.000 19.19 0.00 44.60 2.24
1989 4855 1.331138 CACACGGGCACGAAAAACTAA 59.669 47.619 19.19 0.00 44.60 2.24
1990 4856 2.031508 CACACGGGCACGAAAAACTAAT 60.032 45.455 19.19 0.00 44.60 1.73
1991 4857 3.186817 CACACGGGCACGAAAAACTAATA 59.813 43.478 19.19 0.00 44.60 0.98
1992 4858 3.434299 ACACGGGCACGAAAAACTAATAG 59.566 43.478 19.19 0.00 44.60 1.73
1993 4859 2.417586 ACGGGCACGAAAAACTAATAGC 59.582 45.455 19.19 0.00 44.60 2.97
1994 4860 2.223180 CGGGCACGAAAAACTAATAGCC 60.223 50.000 0.00 0.00 44.60 3.93
1995 4861 3.416119 GGCACGAAAAACTAATAGCCC 57.584 47.619 0.00 0.00 34.94 5.19
1996 4862 2.098607 GGCACGAAAAACTAATAGCCCC 59.901 50.000 0.00 0.00 34.94 5.80
1997 4863 2.223180 GCACGAAAAACTAATAGCCCCG 60.223 50.000 0.00 0.00 0.00 5.73
1998 4864 2.011947 ACGAAAAACTAATAGCCCCGC 58.988 47.619 0.00 0.00 0.00 6.13
1999 4865 1.004292 CGAAAAACTAATAGCCCCGCG 60.004 52.381 0.00 0.00 0.00 6.46
2000 4866 0.736636 AAAAACTAATAGCCCCGCGC 59.263 50.000 0.00 0.00 37.98 6.86
2001 4867 0.393267 AAAACTAATAGCCCCGCGCA 60.393 50.000 8.75 0.00 41.38 6.09
2002 4868 1.093496 AAACTAATAGCCCCGCGCAC 61.093 55.000 8.75 0.00 41.38 5.34
2003 4869 2.108157 CTAATAGCCCCGCGCACA 59.892 61.111 8.75 0.00 41.38 4.57
2004 4870 1.522806 CTAATAGCCCCGCGCACAA 60.523 57.895 8.75 0.00 41.38 3.33
2005 4871 1.078356 TAATAGCCCCGCGCACAAA 60.078 52.632 8.75 0.00 41.38 2.83
2006 4872 0.677098 TAATAGCCCCGCGCACAAAA 60.677 50.000 8.75 0.00 41.38 2.44
2007 4873 1.528292 AATAGCCCCGCGCACAAAAA 61.528 50.000 8.75 0.00 41.38 1.94
2036 4902 2.879756 GCCAAGGGCTTGTATCTGTTGA 60.880 50.000 0.00 0.00 46.69 3.18
2044 4910 3.667960 GCTTGTATCTGTTGAAACCGCAG 60.668 47.826 0.00 0.00 0.00 5.18
2049 4915 1.454847 TGTTGAAACCGCAGCCCTT 60.455 52.632 0.00 0.00 0.00 3.95
2056 4922 0.546598 AACCGCAGCCCTTTAGCTAT 59.453 50.000 0.00 0.00 42.61 2.97
2059 4925 1.202698 CCGCAGCCCTTTAGCTATCTT 60.203 52.381 0.00 0.00 42.61 2.40
2063 4929 3.481453 CAGCCCTTTAGCTATCTTTCCC 58.519 50.000 0.00 0.00 42.61 3.97
2066 4932 3.748989 GCCCTTTAGCTATCTTTCCCCTG 60.749 52.174 0.00 0.00 0.00 4.45
2088 4954 0.601558 TCGAACGGAGGTGGAAGAAG 59.398 55.000 0.00 0.00 0.00 2.85
2096 4962 3.630312 CGGAGGTGGAAGAAGAAAAACAA 59.370 43.478 0.00 0.00 0.00 2.83
2099 4965 5.509670 GGAGGTGGAAGAAGAAAAACAATGG 60.510 44.000 0.00 0.00 0.00 3.16
2106 4972 6.476706 GGAAGAAGAAAAACAATGGACACAAG 59.523 38.462 0.00 0.00 0.00 3.16
2112 4978 8.791327 AGAAAAACAATGGACACAAGATTTTT 57.209 26.923 0.00 0.00 32.32 1.94
2138 5024 1.222115 GCGCACGGACATCCTAATCC 61.222 60.000 0.30 0.00 0.00 3.01
2146 5032 5.648092 CACGGACATCCTAATCCTTTTCTTT 59.352 40.000 0.00 0.00 32.33 2.52
2152 5038 8.809468 ACATCCTAATCCTTTTCTTTCTTACC 57.191 34.615 0.00 0.00 0.00 2.85
2218 5114 1.746861 CGCAATCAGCAATACAGGGGA 60.747 52.381 0.00 0.00 46.13 4.81
2303 5199 0.781787 CACAACGATCTCACGCGAAA 59.218 50.000 15.93 0.00 36.70 3.46
2422 6612 0.880441 GCATGCACCATACACACACA 59.120 50.000 14.21 0.00 0.00 3.72
2437 6627 1.887242 CACACTGGTCACCACACCG 60.887 63.158 0.00 0.00 39.62 4.94
2438 6628 2.363975 ACACTGGTCACCACACCGT 61.364 57.895 0.00 0.00 39.62 4.83
2439 6629 1.153249 CACTGGTCACCACACCGTT 60.153 57.895 0.00 0.00 39.62 4.44
2440 6630 0.746563 CACTGGTCACCACACCGTTT 60.747 55.000 0.00 0.00 39.62 3.60
2441 6631 0.831966 ACTGGTCACCACACCGTTTA 59.168 50.000 0.00 0.00 39.62 2.01
2442 6632 1.209990 ACTGGTCACCACACCGTTTAA 59.790 47.619 0.00 0.00 39.62 1.52
2443 6633 2.158726 ACTGGTCACCACACCGTTTAAT 60.159 45.455 0.00 0.00 39.62 1.40
2444 6634 2.482721 CTGGTCACCACACCGTTTAATC 59.517 50.000 0.00 0.00 39.62 1.75
2445 6635 1.808343 GGTCACCACACCGTTTAATCC 59.192 52.381 0.00 0.00 0.00 3.01
2446 6636 2.551504 GGTCACCACACCGTTTAATCCT 60.552 50.000 0.00 0.00 0.00 3.24
2447 6637 3.306919 GGTCACCACACCGTTTAATCCTA 60.307 47.826 0.00 0.00 0.00 2.94
2448 6638 4.317488 GTCACCACACCGTTTAATCCTAA 58.683 43.478 0.00 0.00 0.00 2.69
2449 6639 4.152938 GTCACCACACCGTTTAATCCTAAC 59.847 45.833 0.00 0.00 0.00 2.34
2450 6640 4.066490 CACCACACCGTTTAATCCTAACA 58.934 43.478 0.00 0.00 0.00 2.41
2451 6641 4.153475 CACCACACCGTTTAATCCTAACAG 59.847 45.833 0.00 0.00 0.00 3.16
2452 6642 4.202388 ACCACACCGTTTAATCCTAACAGT 60.202 41.667 0.00 0.00 0.00 3.55
2453 6643 5.011943 ACCACACCGTTTAATCCTAACAGTA 59.988 40.000 0.00 0.00 0.00 2.74
2454 6644 6.110707 CCACACCGTTTAATCCTAACAGTAT 58.889 40.000 0.00 0.00 0.00 2.12
2455 6645 6.257193 CCACACCGTTTAATCCTAACAGTATC 59.743 42.308 0.00 0.00 0.00 2.24
2456 6646 7.039882 CACACCGTTTAATCCTAACAGTATCT 58.960 38.462 0.00 0.00 0.00 1.98
2457 6647 7.010183 CACACCGTTTAATCCTAACAGTATCTG 59.990 40.741 0.00 0.00 37.52 2.90
2458 6648 6.018994 CACCGTTTAATCCTAACAGTATCTGC 60.019 42.308 0.00 0.00 34.37 4.26
2459 6649 5.465724 CCGTTTAATCCTAACAGTATCTGCC 59.534 44.000 0.00 0.00 34.37 4.85
2460 6650 5.465724 CGTTTAATCCTAACAGTATCTGCCC 59.534 44.000 0.00 0.00 34.37 5.36
2461 6651 6.592870 GTTTAATCCTAACAGTATCTGCCCT 58.407 40.000 0.00 0.00 34.37 5.19
2462 6652 4.696479 AATCCTAACAGTATCTGCCCTG 57.304 45.455 0.00 0.00 34.37 4.45
2463 6653 3.116096 TCCTAACAGTATCTGCCCTGT 57.884 47.619 0.00 0.00 43.53 4.00
2465 6655 3.844211 TCCTAACAGTATCTGCCCTGTTT 59.156 43.478 9.96 0.00 46.82 2.83
2466 6656 4.288626 TCCTAACAGTATCTGCCCTGTTTT 59.711 41.667 9.96 0.00 46.82 2.43
2467 6657 5.010282 CCTAACAGTATCTGCCCTGTTTTT 58.990 41.667 9.96 0.00 46.82 1.94
2468 6658 5.123979 CCTAACAGTATCTGCCCTGTTTTTC 59.876 44.000 9.96 0.00 46.82 2.29
2469 6659 3.421844 ACAGTATCTGCCCTGTTTTTCC 58.578 45.455 0.00 0.00 38.76 3.13
2470 6660 3.074538 ACAGTATCTGCCCTGTTTTTCCT 59.925 43.478 0.00 0.00 38.76 3.36
2471 6661 4.082125 CAGTATCTGCCCTGTTTTTCCTT 58.918 43.478 0.00 0.00 0.00 3.36
2472 6662 4.156739 CAGTATCTGCCCTGTTTTTCCTTC 59.843 45.833 0.00 0.00 0.00 3.46
2473 6663 2.746279 TCTGCCCTGTTTTTCCTTCA 57.254 45.000 0.00 0.00 0.00 3.02
2474 6664 3.243359 TCTGCCCTGTTTTTCCTTCAT 57.757 42.857 0.00 0.00 0.00 2.57
2475 6665 3.575805 TCTGCCCTGTTTTTCCTTCATT 58.424 40.909 0.00 0.00 0.00 2.57
2476 6666 3.966665 TCTGCCCTGTTTTTCCTTCATTT 59.033 39.130 0.00 0.00 0.00 2.32
2477 6667 5.144100 TCTGCCCTGTTTTTCCTTCATTTA 58.856 37.500 0.00 0.00 0.00 1.40
2478 6668 5.779771 TCTGCCCTGTTTTTCCTTCATTTAT 59.220 36.000 0.00 0.00 0.00 1.40
2479 6669 6.269769 TCTGCCCTGTTTTTCCTTCATTTATT 59.730 34.615 0.00 0.00 0.00 1.40
2480 6670 6.229733 TGCCCTGTTTTTCCTTCATTTATTG 58.770 36.000 0.00 0.00 0.00 1.90
2481 6671 6.042552 TGCCCTGTTTTTCCTTCATTTATTGA 59.957 34.615 0.00 0.00 0.00 2.57
2482 6672 6.591448 GCCCTGTTTTTCCTTCATTTATTGAG 59.409 38.462 0.00 0.00 35.27 3.02
2483 6673 7.670364 CCCTGTTTTTCCTTCATTTATTGAGT 58.330 34.615 0.00 0.00 35.27 3.41
2484 6674 8.802267 CCCTGTTTTTCCTTCATTTATTGAGTA 58.198 33.333 0.00 0.00 35.27 2.59
2504 6694 8.749026 TGAGTATTTAACCAAAAACTACCACA 57.251 30.769 0.00 0.00 0.00 4.17
2505 6695 9.186837 TGAGTATTTAACCAAAAACTACCACAA 57.813 29.630 0.00 0.00 0.00 3.33
2509 6699 7.988904 TTTAACCAAAAACTACCACAATTCG 57.011 32.000 0.00 0.00 0.00 3.34
2510 6700 5.585820 AACCAAAAACTACCACAATTCGT 57.414 34.783 0.00 0.00 0.00 3.85
2511 6701 4.927422 ACCAAAAACTACCACAATTCGTG 58.073 39.130 2.22 2.22 45.92 4.35
2521 6711 2.635444 CACAATTCGTGGAAACGTGAC 58.365 47.619 0.00 0.00 42.34 3.67
2522 6712 2.031068 CACAATTCGTGGAAACGTGACA 59.969 45.455 0.00 0.00 42.34 3.58
2523 6713 2.286833 ACAATTCGTGGAAACGTGACAG 59.713 45.455 0.00 0.00 0.00 3.51
2524 6714 2.519377 ATTCGTGGAAACGTGACAGA 57.481 45.000 0.00 0.00 0.00 3.41
2525 6715 1.563111 TTCGTGGAAACGTGACAGAC 58.437 50.000 0.00 0.00 0.00 3.51
2526 6716 0.456628 TCGTGGAAACGTGACAGACA 59.543 50.000 0.00 0.00 0.00 3.41
2527 6717 1.135053 TCGTGGAAACGTGACAGACAA 60.135 47.619 0.00 0.00 0.00 3.18
2528 6718 1.005347 CGTGGAAACGTGACAGACAAC 60.005 52.381 0.00 0.00 0.00 3.32
2529 6719 2.277084 GTGGAAACGTGACAGACAACT 58.723 47.619 0.00 0.00 0.00 3.16
2530 6720 3.450578 GTGGAAACGTGACAGACAACTA 58.549 45.455 0.00 0.00 0.00 2.24
2531 6721 3.244579 GTGGAAACGTGACAGACAACTAC 59.755 47.826 0.00 0.00 0.00 2.73
2532 6722 2.798847 GGAAACGTGACAGACAACTACC 59.201 50.000 0.00 0.00 0.00 3.18
2533 6723 3.450578 GAAACGTGACAGACAACTACCA 58.549 45.455 0.00 0.00 0.00 3.25
2534 6724 2.503920 ACGTGACAGACAACTACCAC 57.496 50.000 0.00 0.00 0.00 4.16
2535 6725 2.029623 ACGTGACAGACAACTACCACT 58.970 47.619 0.00 0.00 0.00 4.00
2536 6726 2.429610 ACGTGACAGACAACTACCACTT 59.570 45.455 0.00 0.00 0.00 3.16
2537 6727 3.118884 ACGTGACAGACAACTACCACTTT 60.119 43.478 0.00 0.00 0.00 2.66
2538 6728 4.098349 ACGTGACAGACAACTACCACTTTA 59.902 41.667 0.00 0.00 0.00 1.85
2539 6729 4.443394 CGTGACAGACAACTACCACTTTAC 59.557 45.833 0.00 0.00 0.00 2.01
2540 6730 4.443394 GTGACAGACAACTACCACTTTACG 59.557 45.833 0.00 0.00 0.00 3.18
2541 6731 4.338964 TGACAGACAACTACCACTTTACGA 59.661 41.667 0.00 0.00 0.00 3.43
2542 6732 5.010314 TGACAGACAACTACCACTTTACGAT 59.990 40.000 0.00 0.00 0.00 3.73
2543 6733 5.467705 ACAGACAACTACCACTTTACGATC 58.532 41.667 0.00 0.00 0.00 3.69
2544 6734 5.243283 ACAGACAACTACCACTTTACGATCT 59.757 40.000 0.00 0.00 0.00 2.75
2545 6735 6.157211 CAGACAACTACCACTTTACGATCTT 58.843 40.000 0.00 0.00 0.00 2.40
2546 6736 6.089551 CAGACAACTACCACTTTACGATCTTG 59.910 42.308 0.00 0.00 0.00 3.02
2547 6737 5.850614 ACAACTACCACTTTACGATCTTGT 58.149 37.500 0.00 0.00 0.00 3.16
2548 6738 5.924825 ACAACTACCACTTTACGATCTTGTC 59.075 40.000 0.00 0.00 0.00 3.18
2549 6739 5.069501 ACTACCACTTTACGATCTTGTCC 57.930 43.478 0.00 0.00 0.00 4.02
2550 6740 3.329929 ACCACTTTACGATCTTGTCCC 57.670 47.619 0.00 0.00 0.00 4.46
2551 6741 2.635915 ACCACTTTACGATCTTGTCCCA 59.364 45.455 0.00 0.00 0.00 4.37
2552 6742 3.071892 ACCACTTTACGATCTTGTCCCAA 59.928 43.478 0.00 0.00 0.00 4.12
2553 6743 4.069304 CCACTTTACGATCTTGTCCCAAA 58.931 43.478 0.00 0.00 0.00 3.28
2554 6744 4.517453 CCACTTTACGATCTTGTCCCAAAA 59.483 41.667 0.00 0.00 0.00 2.44
2555 6745 5.009210 CCACTTTACGATCTTGTCCCAAAAA 59.991 40.000 0.00 0.00 0.00 1.94
2556 6746 5.912955 CACTTTACGATCTTGTCCCAAAAAC 59.087 40.000 0.00 0.00 0.00 2.43
2557 6747 5.826208 ACTTTACGATCTTGTCCCAAAAACT 59.174 36.000 0.00 0.00 0.00 2.66
2558 6748 6.993902 ACTTTACGATCTTGTCCCAAAAACTA 59.006 34.615 0.00 0.00 0.00 2.24
2559 6749 6.790285 TTACGATCTTGTCCCAAAAACTAC 57.210 37.500 0.00 0.00 0.00 2.73
2560 6750 4.070009 ACGATCTTGTCCCAAAAACTACC 58.930 43.478 0.00 0.00 0.00 3.18
2561 6751 4.069304 CGATCTTGTCCCAAAAACTACCA 58.931 43.478 0.00 0.00 0.00 3.25
2562 6752 4.083484 CGATCTTGTCCCAAAAACTACCAC 60.083 45.833 0.00 0.00 0.00 4.16
2563 6753 4.513406 TCTTGTCCCAAAAACTACCACT 57.487 40.909 0.00 0.00 0.00 4.00
2564 6754 4.862371 TCTTGTCCCAAAAACTACCACTT 58.138 39.130 0.00 0.00 0.00 3.16
2565 6755 5.265989 TCTTGTCCCAAAAACTACCACTTT 58.734 37.500 0.00 0.00 0.00 2.66
2566 6756 5.717654 TCTTGTCCCAAAAACTACCACTTTT 59.282 36.000 0.00 0.00 0.00 2.27
2567 6757 6.211785 TCTTGTCCCAAAAACTACCACTTTTT 59.788 34.615 0.00 0.00 32.23 1.94
2568 6758 7.396623 TCTTGTCCCAAAAACTACCACTTTTTA 59.603 33.333 0.00 0.00 31.15 1.52
2569 6759 6.865411 TGTCCCAAAAACTACCACTTTTTAC 58.135 36.000 0.00 0.00 31.15 2.01
2570 6760 6.664384 TGTCCCAAAAACTACCACTTTTTACT 59.336 34.615 0.00 0.00 31.15 2.24
2571 6761 7.833183 TGTCCCAAAAACTACCACTTTTTACTA 59.167 33.333 0.00 0.00 31.15 1.82
2572 6762 8.685427 GTCCCAAAAACTACCACTTTTTACTAA 58.315 33.333 0.00 0.00 31.15 2.24
2573 6763 9.423964 TCCCAAAAACTACCACTTTTTACTAAT 57.576 29.630 0.00 0.00 31.15 1.73
2580 6770 9.856162 AACTACCACTTTTTACTAATTTCCTGA 57.144 29.630 0.00 0.00 0.00 3.86
2581 6771 9.281371 ACTACCACTTTTTACTAATTTCCTGAC 57.719 33.333 0.00 0.00 0.00 3.51
2582 6772 9.280174 CTACCACTTTTTACTAATTTCCTGACA 57.720 33.333 0.00 0.00 0.00 3.58
2583 6773 8.528044 ACCACTTTTTACTAATTTCCTGACAA 57.472 30.769 0.00 0.00 0.00 3.18
2584 6774 8.973182 ACCACTTTTTACTAATTTCCTGACAAA 58.027 29.630 0.00 0.00 0.00 2.83
2585 6775 9.810545 CCACTTTTTACTAATTTCCTGACAAAA 57.189 29.630 0.00 0.00 0.00 2.44
2619 6809 2.188062 AAAATGGCCGGTTTAGACGA 57.812 45.000 1.90 0.00 0.00 4.20
2620 6810 2.413310 AAATGGCCGGTTTAGACGAT 57.587 45.000 1.90 0.00 0.00 3.73
2621 6811 2.413310 AATGGCCGGTTTAGACGATT 57.587 45.000 1.90 0.00 0.00 3.34
2622 6812 2.413310 ATGGCCGGTTTAGACGATTT 57.587 45.000 1.90 0.00 0.00 2.17
2623 6813 3.547054 ATGGCCGGTTTAGACGATTTA 57.453 42.857 1.90 0.00 0.00 1.40
2624 6814 3.331478 TGGCCGGTTTAGACGATTTAA 57.669 42.857 1.90 0.00 0.00 1.52
2625 6815 3.672808 TGGCCGGTTTAGACGATTTAAA 58.327 40.909 1.90 0.00 0.00 1.52
2626 6816 3.436359 TGGCCGGTTTAGACGATTTAAAC 59.564 43.478 1.90 1.09 39.26 2.01
2627 6817 3.436359 GGCCGGTTTAGACGATTTAAACA 59.564 43.478 1.90 0.00 40.87 2.83
2628 6818 4.095334 GGCCGGTTTAGACGATTTAAACAT 59.905 41.667 1.90 0.00 40.87 2.71
2629 6819 5.025826 GCCGGTTTAGACGATTTAAACATG 58.974 41.667 1.90 0.00 40.87 3.21
2630 6820 5.391203 GCCGGTTTAGACGATTTAAACATGT 60.391 40.000 1.90 0.00 40.87 3.21
2631 6821 6.604930 CCGGTTTAGACGATTTAAACATGTT 58.395 36.000 4.92 4.92 40.87 2.71
2632 6822 7.079475 CCGGTTTAGACGATTTAAACATGTTT 58.921 34.615 25.99 25.99 40.87 2.83
2633 6823 8.229137 CCGGTTTAGACGATTTAAACATGTTTA 58.771 33.333 23.91 23.91 40.87 2.01
2634 6824 9.763465 CGGTTTAGACGATTTAAACATGTTTAT 57.237 29.630 27.14 17.09 40.87 1.40
2640 6830 8.450964 AGACGATTTAAACATGTTTATGACAGG 58.549 33.333 27.14 17.55 45.24 4.00
2641 6831 7.027161 ACGATTTAAACATGTTTATGACAGGC 58.973 34.615 27.14 13.69 43.62 4.85
2642 6832 6.194508 CGATTTAAACATGTTTATGACAGGCG 59.805 38.462 27.14 19.36 43.62 5.52
2643 6833 3.848272 AAACATGTTTATGACAGGCGG 57.152 42.857 22.10 0.00 43.62 6.13
2644 6834 1.750193 ACATGTTTATGACAGGCGGG 58.250 50.000 0.00 0.00 43.62 6.13
2645 6835 1.024271 CATGTTTATGACAGGCGGGG 58.976 55.000 0.00 0.00 42.62 5.73
2646 6836 0.751643 ATGTTTATGACAGGCGGGGC 60.752 55.000 0.00 0.00 42.62 5.80
2657 6847 2.033602 GCGGGGCCACTAGTGTTT 59.966 61.111 21.18 0.00 0.00 2.83
2658 6848 1.602605 GCGGGGCCACTAGTGTTTT 60.603 57.895 21.18 0.00 0.00 2.43
2659 6849 1.176619 GCGGGGCCACTAGTGTTTTT 61.177 55.000 21.18 0.00 0.00 1.94
2677 6867 1.256812 TTTGCAGAAAAGCCCCTAGC 58.743 50.000 0.00 0.00 44.25 3.42
2691 6881 5.740290 GCCCCTAGCACTACTATTAATCA 57.260 43.478 0.00 0.00 42.97 2.57
2692 6882 5.480205 GCCCCTAGCACTACTATTAATCAC 58.520 45.833 0.00 0.00 42.97 3.06
2693 6883 5.710984 CCCCTAGCACTACTATTAATCACG 58.289 45.833 0.00 0.00 0.00 4.35
2694 6884 5.162075 CCCTAGCACTACTATTAATCACGC 58.838 45.833 0.00 0.00 0.00 5.34
2695 6885 5.278808 CCCTAGCACTACTATTAATCACGCA 60.279 44.000 0.00 0.00 0.00 5.24
2696 6886 5.629849 CCTAGCACTACTATTAATCACGCAC 59.370 44.000 0.00 0.00 0.00 5.34
2697 6887 5.006153 AGCACTACTATTAATCACGCACA 57.994 39.130 0.00 0.00 0.00 4.57
2698 6888 5.601662 AGCACTACTATTAATCACGCACAT 58.398 37.500 0.00 0.00 0.00 3.21
2699 6889 5.463392 AGCACTACTATTAATCACGCACATG 59.537 40.000 0.00 0.00 0.00 3.21
2700 6890 5.670097 CACTACTATTAATCACGCACATGC 58.330 41.667 0.00 0.00 37.78 4.06
2701 6891 4.750098 ACTACTATTAATCACGCACATGCC 59.250 41.667 0.00 0.00 37.91 4.40
2702 6892 2.878406 ACTATTAATCACGCACATGCCC 59.122 45.455 0.00 0.00 37.91 5.36
2703 6893 1.761449 ATTAATCACGCACATGCCCA 58.239 45.000 0.00 0.00 37.91 5.36
2704 6894 1.761449 TTAATCACGCACATGCCCAT 58.239 45.000 0.00 0.00 37.91 4.00
2705 6895 1.761449 TAATCACGCACATGCCCATT 58.239 45.000 0.00 0.00 37.91 3.16
2706 6896 0.173935 AATCACGCACATGCCCATTG 59.826 50.000 0.00 0.00 37.91 2.82
2707 6897 2.287457 ATCACGCACATGCCCATTGC 62.287 55.000 0.00 0.00 41.77 3.56
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
289 370 1.000060 GCATGCATCCAGTGTGTGTTT 60.000 47.619 14.21 0.00 0.00 2.83
430 690 1.325904 CGTCTTCGACCGTCGTGTTC 61.326 60.000 19.89 9.16 41.35 3.18
431 691 1.369689 CGTCTTCGACCGTCGTGTT 60.370 57.895 19.89 0.00 41.35 3.32
561 918 5.089411 CGTTCTATATATGTCTGGCACGAG 58.911 45.833 0.00 0.00 0.00 4.18
709 1107 2.288273 GCCTATATATAGAAGCCGGCGG 60.288 54.545 24.35 24.35 32.05 6.13
914 1543 0.229753 GCATCTACATTCGCGTTCCG 59.770 55.000 5.77 0.00 38.61 4.30
915 1544 0.582005 GGCATCTACATTCGCGTTCC 59.418 55.000 5.77 0.00 0.00 3.62
916 1545 1.571919 AGGCATCTACATTCGCGTTC 58.428 50.000 5.77 0.00 0.00 3.95
917 1546 2.024176 AAGGCATCTACATTCGCGTT 57.976 45.000 5.77 0.00 0.00 4.84
918 1547 1.933853 GAAAGGCATCTACATTCGCGT 59.066 47.619 5.77 0.00 0.00 6.01
920 1549 2.286654 GCTGAAAGGCATCTACATTCGC 60.287 50.000 0.00 0.00 0.00 4.70
921 1550 3.201290 AGCTGAAAGGCATCTACATTCG 58.799 45.455 0.00 0.00 34.17 3.34
922 1551 3.247173 CGAGCTGAAAGGCATCTACATTC 59.753 47.826 0.00 0.00 34.17 2.67
923 1552 3.201290 CGAGCTGAAAGGCATCTACATT 58.799 45.455 0.00 0.00 34.17 2.71
924 1553 2.169352 ACGAGCTGAAAGGCATCTACAT 59.831 45.455 0.00 0.00 34.17 2.29
925 1554 1.550524 ACGAGCTGAAAGGCATCTACA 59.449 47.619 0.00 0.00 34.17 2.74
926 1555 2.301577 ACGAGCTGAAAGGCATCTAC 57.698 50.000 0.00 0.00 34.17 2.59
927 1556 3.334583 AAACGAGCTGAAAGGCATCTA 57.665 42.857 0.00 0.00 34.17 1.98
928 1557 2.191128 AAACGAGCTGAAAGGCATCT 57.809 45.000 0.00 0.00 34.17 2.90
929 1558 2.997485 AAAACGAGCTGAAAGGCATC 57.003 45.000 0.00 0.00 34.17 3.91
930 1559 3.366374 GCTTAAAACGAGCTGAAAGGCAT 60.366 43.478 0.00 0.00 37.18 4.40
931 1560 2.031157 GCTTAAAACGAGCTGAAAGGCA 60.031 45.455 0.00 0.00 37.18 4.75
932 1561 2.585845 GCTTAAAACGAGCTGAAAGGC 58.414 47.619 0.00 0.00 37.18 4.35
933 1562 2.412847 CGGCTTAAAACGAGCTGAAAGG 60.413 50.000 0.00 0.00 46.98 3.11
934 1563 2.412847 CCGGCTTAAAACGAGCTGAAAG 60.413 50.000 6.51 0.00 46.98 2.62
935 1564 1.533731 CCGGCTTAAAACGAGCTGAAA 59.466 47.619 6.51 0.00 46.98 2.69
936 1565 1.153353 CCGGCTTAAAACGAGCTGAA 58.847 50.000 6.51 0.00 46.98 3.02
937 1566 1.296056 GCCGGCTTAAAACGAGCTGA 61.296 55.000 22.15 0.00 46.98 4.26
960 1592 3.430862 GCGCATGCCTTGTCCGAA 61.431 61.111 13.15 0.00 33.98 4.30
988 1628 1.377202 GAGCCATCTTGTGCGGGAA 60.377 57.895 0.00 0.00 0.00 3.97
989 1629 2.268920 GAGCCATCTTGTGCGGGA 59.731 61.111 0.00 0.00 0.00 5.14
990 1630 2.825836 GGAGCCATCTTGTGCGGG 60.826 66.667 0.00 0.00 0.00 6.13
998 1638 2.906458 CGGAAGCTGGAGCCATCT 59.094 61.111 0.00 0.00 43.38 2.90
1113 1803 4.821589 GTCGCTTGCCGGAGAGGG 62.822 72.222 5.05 10.60 41.48 4.30
1131 1829 1.658373 CGCGCATCAGTACGTACGTAT 60.658 52.381 29.05 13.17 32.82 3.06
1236 1980 2.740055 GTGTCCGTGGAGCTGCAG 60.740 66.667 8.73 10.11 0.00 4.41
1248 1992 2.841442 AGTAGCAGAACTTGGTGTCC 57.159 50.000 0.00 0.00 38.18 4.02
1473 3007 4.954118 ACTGGGAGCGGGTGGTCA 62.954 66.667 0.00 0.00 44.47 4.02
1526 3060 1.519455 CCGAGATCGAACTGTGGCC 60.519 63.158 0.00 0.00 43.02 5.36
1797 4623 3.440173 AGACGTACAATTTCCCATGCAAG 59.560 43.478 0.00 0.00 0.00 4.01
1866 4727 4.099419 TGAGATGCATCGAGCTAGGTAAAA 59.901 41.667 20.67 0.00 45.94 1.52
1867 4728 3.636764 TGAGATGCATCGAGCTAGGTAAA 59.363 43.478 20.67 0.00 45.94 2.01
1897 4759 5.884232 AGCCACATCCATATATACATGCAAG 59.116 40.000 0.00 0.00 0.00 4.01
1929 4795 3.812577 CGGAGGGCAAAATTCCAAC 57.187 52.632 0.00 0.00 0.00 3.77
1943 4809 3.310774 GTGTGATTTGATGTGATCCGGAG 59.689 47.826 11.34 0.00 0.00 4.63
1944 4810 3.270027 GTGTGATTTGATGTGATCCGGA 58.730 45.455 6.61 6.61 0.00 5.14
1945 4811 3.009026 TGTGTGATTTGATGTGATCCGG 58.991 45.455 0.00 0.00 0.00 5.14
1946 4812 4.683501 TTGTGTGATTTGATGTGATCCG 57.316 40.909 0.00 0.00 0.00 4.18
1947 4813 5.630680 GTGTTTGTGTGATTTGATGTGATCC 59.369 40.000 0.00 0.00 0.00 3.36
1948 4814 6.142798 GTGTGTTTGTGTGATTTGATGTGATC 59.857 38.462 0.00 0.00 0.00 2.92
1949 4815 5.978919 GTGTGTTTGTGTGATTTGATGTGAT 59.021 36.000 0.00 0.00 0.00 3.06
1950 4816 5.339177 GTGTGTTTGTGTGATTTGATGTGA 58.661 37.500 0.00 0.00 0.00 3.58
1951 4817 4.204775 CGTGTGTTTGTGTGATTTGATGTG 59.795 41.667 0.00 0.00 0.00 3.21
1952 4818 4.350346 CGTGTGTTTGTGTGATTTGATGT 58.650 39.130 0.00 0.00 0.00 3.06
1953 4819 3.730215 CCGTGTGTTTGTGTGATTTGATG 59.270 43.478 0.00 0.00 0.00 3.07
1954 4820 3.243367 CCCGTGTGTTTGTGTGATTTGAT 60.243 43.478 0.00 0.00 0.00 2.57
1955 4821 2.098280 CCCGTGTGTTTGTGTGATTTGA 59.902 45.455 0.00 0.00 0.00 2.69
1956 4822 2.458951 CCCGTGTGTTTGTGTGATTTG 58.541 47.619 0.00 0.00 0.00 2.32
1957 4823 1.202359 GCCCGTGTGTTTGTGTGATTT 60.202 47.619 0.00 0.00 0.00 2.17
1958 4824 0.383949 GCCCGTGTGTTTGTGTGATT 59.616 50.000 0.00 0.00 0.00 2.57
1959 4825 0.749818 TGCCCGTGTGTTTGTGTGAT 60.750 50.000 0.00 0.00 0.00 3.06
1960 4826 1.377333 TGCCCGTGTGTTTGTGTGA 60.377 52.632 0.00 0.00 0.00 3.58
1961 4827 1.226547 GTGCCCGTGTGTTTGTGTG 60.227 57.895 0.00 0.00 0.00 3.82
1962 4828 2.756025 CGTGCCCGTGTGTTTGTGT 61.756 57.895 0.00 0.00 0.00 3.72
1963 4829 1.983196 TTCGTGCCCGTGTGTTTGTG 61.983 55.000 0.00 0.00 35.01 3.33
1964 4830 1.306642 TTTCGTGCCCGTGTGTTTGT 61.307 50.000 0.00 0.00 35.01 2.83
1965 4831 0.179161 TTTTCGTGCCCGTGTGTTTG 60.179 50.000 0.00 0.00 35.01 2.93
1966 4832 0.526662 TTTTTCGTGCCCGTGTGTTT 59.473 45.000 0.00 0.00 35.01 2.83
1967 4833 0.179158 GTTTTTCGTGCCCGTGTGTT 60.179 50.000 0.00 0.00 35.01 3.32
1968 4834 1.027792 AGTTTTTCGTGCCCGTGTGT 61.028 50.000 0.00 0.00 35.01 3.72
1969 4835 0.938713 TAGTTTTTCGTGCCCGTGTG 59.061 50.000 0.00 0.00 35.01 3.82
1970 4836 1.666054 TTAGTTTTTCGTGCCCGTGT 58.334 45.000 0.00 0.00 35.01 4.49
1971 4837 2.981400 ATTAGTTTTTCGTGCCCGTG 57.019 45.000 0.00 0.00 35.01 4.94
1972 4838 2.417586 GCTATTAGTTTTTCGTGCCCGT 59.582 45.455 0.00 0.00 35.01 5.28
1973 4839 2.223180 GGCTATTAGTTTTTCGTGCCCG 60.223 50.000 0.00 0.00 33.66 6.13
1974 4840 3.416119 GGCTATTAGTTTTTCGTGCCC 57.584 47.619 0.00 0.00 33.66 5.36
1975 4841 2.098607 GGGGCTATTAGTTTTTCGTGCC 59.901 50.000 0.00 0.00 38.49 5.01
1976 4842 2.223180 CGGGGCTATTAGTTTTTCGTGC 60.223 50.000 0.00 0.00 0.00 5.34
1977 4843 2.223180 GCGGGGCTATTAGTTTTTCGTG 60.223 50.000 0.00 0.00 0.00 4.35
1978 4844 2.011947 GCGGGGCTATTAGTTTTTCGT 58.988 47.619 0.00 0.00 0.00 3.85
1979 4845 1.004292 CGCGGGGCTATTAGTTTTTCG 60.004 52.381 0.00 0.00 0.00 3.46
1980 4846 1.268386 GCGCGGGGCTATTAGTTTTTC 60.268 52.381 8.83 0.00 39.11 2.29
1981 4847 0.736636 GCGCGGGGCTATTAGTTTTT 59.263 50.000 8.83 0.00 39.11 1.94
1982 4848 0.393267 TGCGCGGGGCTATTAGTTTT 60.393 50.000 18.19 0.00 44.05 2.43
1983 4849 1.093496 GTGCGCGGGGCTATTAGTTT 61.093 55.000 18.19 0.00 44.05 2.66
1984 4850 1.523032 GTGCGCGGGGCTATTAGTT 60.523 57.895 18.19 0.00 44.05 2.24
1985 4851 2.108362 GTGCGCGGGGCTATTAGT 59.892 61.111 18.19 0.00 44.05 2.24
1986 4852 1.092921 TTTGTGCGCGGGGCTATTAG 61.093 55.000 18.19 0.00 44.05 1.73
1987 4853 0.677098 TTTTGTGCGCGGGGCTATTA 60.677 50.000 18.19 0.00 44.05 0.98
1988 4854 1.528292 TTTTTGTGCGCGGGGCTATT 61.528 50.000 18.19 0.00 44.05 1.73
1989 4855 1.974343 TTTTTGTGCGCGGGGCTAT 60.974 52.632 18.19 0.00 44.05 2.97
1990 4856 2.594882 TTTTTGTGCGCGGGGCTA 60.595 55.556 18.19 4.64 44.05 3.93
2016 4882 3.071874 TCAACAGATACAAGCCCTTGG 57.928 47.619 12.22 0.00 44.45 3.61
2017 4883 4.321230 GGTTTCAACAGATACAAGCCCTTG 60.321 45.833 6.48 6.48 45.58 3.61
2018 4884 3.826729 GGTTTCAACAGATACAAGCCCTT 59.173 43.478 0.00 0.00 0.00 3.95
2019 4885 3.421844 GGTTTCAACAGATACAAGCCCT 58.578 45.455 0.00 0.00 0.00 5.19
2020 4886 2.161609 CGGTTTCAACAGATACAAGCCC 59.838 50.000 0.00 0.00 0.00 5.19
2021 4887 2.414161 GCGGTTTCAACAGATACAAGCC 60.414 50.000 0.00 0.00 0.00 4.35
2022 4888 2.225491 TGCGGTTTCAACAGATACAAGC 59.775 45.455 0.00 0.00 0.00 4.01
2023 4889 3.667960 GCTGCGGTTTCAACAGATACAAG 60.668 47.826 0.00 0.00 33.10 3.16
2024 4890 2.225491 GCTGCGGTTTCAACAGATACAA 59.775 45.455 0.00 0.00 33.10 2.41
2025 4891 1.804151 GCTGCGGTTTCAACAGATACA 59.196 47.619 0.00 0.00 33.10 2.29
2026 4892 1.130561 GGCTGCGGTTTCAACAGATAC 59.869 52.381 0.00 0.00 33.10 2.24
2027 4893 1.448985 GGCTGCGGTTTCAACAGATA 58.551 50.000 0.00 0.00 33.10 1.98
2028 4894 1.244019 GGGCTGCGGTTTCAACAGAT 61.244 55.000 0.00 0.00 33.10 2.90
2029 4895 1.896660 GGGCTGCGGTTTCAACAGA 60.897 57.895 0.00 0.00 33.10 3.41
2030 4896 1.455383 AAGGGCTGCGGTTTCAACAG 61.455 55.000 0.00 0.00 34.48 3.16
2036 4902 0.326927 TAGCTAAAGGGCTGCGGTTT 59.673 50.000 0.00 0.00 43.01 3.27
2044 4910 2.443632 AGGGGAAAGATAGCTAAAGGGC 59.556 50.000 0.00 0.00 0.00 5.19
2049 4915 3.637229 CGAGTCAGGGGAAAGATAGCTAA 59.363 47.826 0.00 0.00 0.00 3.09
2056 4922 0.601558 CGTTCGAGTCAGGGGAAAGA 59.398 55.000 0.00 0.00 0.00 2.52
2059 4925 1.228644 TCCGTTCGAGTCAGGGGAA 60.229 57.895 0.00 0.00 0.00 3.97
2063 4929 1.213013 CACCTCCGTTCGAGTCAGG 59.787 63.158 0.00 0.00 36.82 3.86
2066 4932 0.109226 CTTCCACCTCCGTTCGAGTC 60.109 60.000 0.00 0.00 36.82 3.36
2088 4954 7.845622 CGAAAAATCTTGTGTCCATTGTTTTTC 59.154 33.333 0.00 0.00 39.26 2.29
2096 4962 2.231235 GGCCGAAAAATCTTGTGTCCAT 59.769 45.455 0.00 0.00 0.00 3.41
2099 4965 1.401018 CCGGCCGAAAAATCTTGTGTC 60.401 52.381 30.73 0.00 0.00 3.67
2106 4972 4.109693 TGCGCCGGCCGAAAAATC 62.110 61.111 30.73 9.72 40.02 2.17
2126 5012 8.894731 GGTAAGAAAGAAAAGGATTAGGATGTC 58.105 37.037 0.00 0.00 0.00 3.06
2129 5015 7.553044 CACGGTAAGAAAGAAAAGGATTAGGAT 59.447 37.037 0.00 0.00 0.00 3.24
2130 5016 6.877322 CACGGTAAGAAAGAAAAGGATTAGGA 59.123 38.462 0.00 0.00 0.00 2.94
2133 5019 5.413523 GCCACGGTAAGAAAGAAAAGGATTA 59.586 40.000 0.00 0.00 0.00 1.75
2138 5024 4.753107 TGTAGCCACGGTAAGAAAGAAAAG 59.247 41.667 0.00 0.00 0.00 2.27
2191 5087 0.895100 ATTGCTGATTGCGGTGTGGT 60.895 50.000 0.00 0.00 46.63 4.16
2196 5092 1.382522 CCTGTATTGCTGATTGCGGT 58.617 50.000 0.00 0.00 46.63 5.68
2198 5094 0.664761 CCCCTGTATTGCTGATTGCG 59.335 55.000 0.00 0.00 46.63 4.85
2218 5114 2.193536 GCGCCGGGGCATAAAAGAT 61.194 57.895 35.95 0.00 42.06 2.40
2248 5144 2.125147 CGGATCACACCGTGCCAT 60.125 61.111 0.00 0.00 46.70 4.40
2303 5199 1.181741 TGTTGAGAGCAGCCGAGTCT 61.182 55.000 0.00 0.00 0.00 3.24
2339 6527 3.720193 GTGTGGCTGCGTGCTGAG 61.720 66.667 2.69 0.00 42.39 3.35
2422 6612 0.831966 TAAACGGTGTGGTGACCAGT 59.168 50.000 3.58 0.00 35.50 4.00
2437 6627 6.483640 CAGGGCAGATACTGTTAGGATTAAAC 59.516 42.308 0.00 0.00 33.43 2.01
2438 6628 6.157994 ACAGGGCAGATACTGTTAGGATTAAA 59.842 38.462 0.00 0.00 45.03 1.52
2439 6629 5.665812 ACAGGGCAGATACTGTTAGGATTAA 59.334 40.000 0.00 0.00 45.03 1.40
2440 6630 5.216622 ACAGGGCAGATACTGTTAGGATTA 58.783 41.667 0.00 0.00 45.03 1.75
2441 6631 4.040755 ACAGGGCAGATACTGTTAGGATT 58.959 43.478 0.00 0.00 45.03 3.01
2442 6632 3.658725 ACAGGGCAGATACTGTTAGGAT 58.341 45.455 0.00 0.00 45.03 3.24
2443 6633 3.116096 ACAGGGCAGATACTGTTAGGA 57.884 47.619 0.00 0.00 45.03 2.94
2449 6639 3.690460 AGGAAAAACAGGGCAGATACTG 58.310 45.455 0.00 0.00 40.48 2.74
2450 6640 4.202567 TGAAGGAAAAACAGGGCAGATACT 60.203 41.667 0.00 0.00 0.00 2.12
2451 6641 4.079253 TGAAGGAAAAACAGGGCAGATAC 58.921 43.478 0.00 0.00 0.00 2.24
2452 6642 4.380843 TGAAGGAAAAACAGGGCAGATA 57.619 40.909 0.00 0.00 0.00 1.98
2453 6643 3.243359 TGAAGGAAAAACAGGGCAGAT 57.757 42.857 0.00 0.00 0.00 2.90
2454 6644 2.746279 TGAAGGAAAAACAGGGCAGA 57.254 45.000 0.00 0.00 0.00 4.26
2455 6645 4.341366 AAATGAAGGAAAAACAGGGCAG 57.659 40.909 0.00 0.00 0.00 4.85
2456 6646 6.042552 TCAATAAATGAAGGAAAAACAGGGCA 59.957 34.615 0.00 0.00 34.30 5.36
2457 6647 6.463360 TCAATAAATGAAGGAAAAACAGGGC 58.537 36.000 0.00 0.00 34.30 5.19
2458 6648 7.670364 ACTCAATAAATGAAGGAAAAACAGGG 58.330 34.615 0.00 0.00 37.67 4.45
2478 6668 9.186837 TGTGGTAGTTTTTGGTTAAATACTCAA 57.813 29.630 0.00 0.00 38.47 3.02
2479 6669 8.749026 TGTGGTAGTTTTTGGTTAAATACTCA 57.251 30.769 0.00 0.00 38.47 3.41
2483 6673 9.680315 CGAATTGTGGTAGTTTTTGGTTAAATA 57.320 29.630 0.00 0.00 0.00 1.40
2484 6674 8.198778 ACGAATTGTGGTAGTTTTTGGTTAAAT 58.801 29.630 0.00 0.00 0.00 1.40
2485 6675 7.488471 CACGAATTGTGGTAGTTTTTGGTTAAA 59.512 33.333 0.00 0.00 45.21 1.52
2486 6676 6.973474 CACGAATTGTGGTAGTTTTTGGTTAA 59.027 34.615 0.00 0.00 45.21 2.01
2487 6677 6.496571 CACGAATTGTGGTAGTTTTTGGTTA 58.503 36.000 0.00 0.00 45.21 2.85
2488 6678 5.344884 CACGAATTGTGGTAGTTTTTGGTT 58.655 37.500 0.00 0.00 45.21 3.67
2489 6679 4.927422 CACGAATTGTGGTAGTTTTTGGT 58.073 39.130 0.00 0.00 45.21 3.67
2509 6699 2.277084 AGTTGTCTGTCACGTTTCCAC 58.723 47.619 0.00 0.00 0.00 4.02
2510 6700 2.684001 AGTTGTCTGTCACGTTTCCA 57.316 45.000 0.00 0.00 0.00 3.53
2511 6701 2.798847 GGTAGTTGTCTGTCACGTTTCC 59.201 50.000 0.00 0.00 0.00 3.13
2512 6702 3.244579 GTGGTAGTTGTCTGTCACGTTTC 59.755 47.826 0.00 0.00 0.00 2.78
2513 6703 3.118884 AGTGGTAGTTGTCTGTCACGTTT 60.119 43.478 0.00 0.00 35.10 3.60
2514 6704 2.429610 AGTGGTAGTTGTCTGTCACGTT 59.570 45.455 0.00 0.00 35.10 3.99
2515 6705 2.029623 AGTGGTAGTTGTCTGTCACGT 58.970 47.619 0.00 0.00 35.10 4.49
2516 6706 2.795175 AGTGGTAGTTGTCTGTCACG 57.205 50.000 0.00 0.00 35.10 4.35
2517 6707 4.443394 CGTAAAGTGGTAGTTGTCTGTCAC 59.557 45.833 0.00 0.00 0.00 3.67
2518 6708 4.338964 TCGTAAAGTGGTAGTTGTCTGTCA 59.661 41.667 0.00 0.00 0.00 3.58
2519 6709 4.863491 TCGTAAAGTGGTAGTTGTCTGTC 58.137 43.478 0.00 0.00 0.00 3.51
2520 6710 4.924305 TCGTAAAGTGGTAGTTGTCTGT 57.076 40.909 0.00 0.00 0.00 3.41
2521 6711 5.710984 AGATCGTAAAGTGGTAGTTGTCTG 58.289 41.667 0.00 0.00 0.00 3.51
2522 6712 5.979288 AGATCGTAAAGTGGTAGTTGTCT 57.021 39.130 0.00 0.00 0.00 3.41
2523 6713 5.924825 ACAAGATCGTAAAGTGGTAGTTGTC 59.075 40.000 0.00 0.00 0.00 3.18
2524 6714 5.850614 ACAAGATCGTAAAGTGGTAGTTGT 58.149 37.500 0.00 0.00 0.00 3.32
2525 6715 5.347907 GGACAAGATCGTAAAGTGGTAGTTG 59.652 44.000 0.00 0.00 0.00 3.16
2526 6716 5.476614 GGACAAGATCGTAAAGTGGTAGTT 58.523 41.667 0.00 0.00 0.00 2.24
2527 6717 4.081807 GGGACAAGATCGTAAAGTGGTAGT 60.082 45.833 0.00 0.00 0.00 2.73
2528 6718 4.081862 TGGGACAAGATCGTAAAGTGGTAG 60.082 45.833 0.00 0.00 31.92 3.18
2529 6719 3.833650 TGGGACAAGATCGTAAAGTGGTA 59.166 43.478 0.00 0.00 31.92 3.25
2530 6720 2.635915 TGGGACAAGATCGTAAAGTGGT 59.364 45.455 0.00 0.00 31.92 4.16
2531 6721 3.328382 TGGGACAAGATCGTAAAGTGG 57.672 47.619 0.00 0.00 31.92 4.00
2545 6735 6.664384 AGTAAAAAGTGGTAGTTTTTGGGACA 59.336 34.615 14.22 0.00 40.01 4.02
2546 6736 7.104043 AGTAAAAAGTGGTAGTTTTTGGGAC 57.896 36.000 14.22 7.30 40.01 4.46
2547 6737 8.820153 TTAGTAAAAAGTGGTAGTTTTTGGGA 57.180 30.769 14.22 1.12 40.01 4.37
2554 6744 9.856162 TCAGGAAATTAGTAAAAAGTGGTAGTT 57.144 29.630 0.00 0.00 0.00 2.24
2555 6745 9.281371 GTCAGGAAATTAGTAAAAAGTGGTAGT 57.719 33.333 0.00 0.00 0.00 2.73
2556 6746 9.280174 TGTCAGGAAATTAGTAAAAAGTGGTAG 57.720 33.333 0.00 0.00 0.00 3.18
2557 6747 9.629878 TTGTCAGGAAATTAGTAAAAAGTGGTA 57.370 29.630 0.00 0.00 0.00 3.25
2558 6748 8.528044 TTGTCAGGAAATTAGTAAAAAGTGGT 57.472 30.769 0.00 0.00 0.00 4.16
2559 6749 9.810545 TTTTGTCAGGAAATTAGTAAAAAGTGG 57.189 29.630 0.00 0.00 0.00 4.00
2599 6789 2.506444 TCGTCTAAACCGGCCATTTTT 58.494 42.857 0.00 0.52 0.00 1.94
2600 6790 2.188062 TCGTCTAAACCGGCCATTTT 57.812 45.000 0.00 3.39 0.00 1.82
2601 6791 2.413310 ATCGTCTAAACCGGCCATTT 57.587 45.000 0.00 5.28 0.00 2.32
2602 6792 2.413310 AATCGTCTAAACCGGCCATT 57.587 45.000 0.00 0.00 0.00 3.16
2603 6793 2.413310 AAATCGTCTAAACCGGCCAT 57.587 45.000 0.00 0.00 0.00 4.40
2604 6794 3.331478 TTAAATCGTCTAAACCGGCCA 57.669 42.857 0.00 0.00 0.00 5.36
2605 6795 3.436359 TGTTTAAATCGTCTAAACCGGCC 59.564 43.478 0.00 0.00 38.11 6.13
2606 6796 4.666928 TGTTTAAATCGTCTAAACCGGC 57.333 40.909 0.00 0.00 38.11 6.13
2607 6797 6.173191 ACATGTTTAAATCGTCTAAACCGG 57.827 37.500 0.00 0.00 38.11 5.28
2608 6798 9.763465 ATAAACATGTTTAAATCGTCTAAACCG 57.237 29.630 29.44 7.47 38.11 4.44
2614 6804 8.450964 CCTGTCATAAACATGTTTAAATCGTCT 58.549 33.333 29.44 12.59 38.38 4.18
2615 6805 7.218204 GCCTGTCATAAACATGTTTAAATCGTC 59.782 37.037 29.44 17.48 38.38 4.20
2616 6806 7.027161 GCCTGTCATAAACATGTTTAAATCGT 58.973 34.615 29.44 13.88 38.38 3.73
2617 6807 6.194508 CGCCTGTCATAAACATGTTTAAATCG 59.805 38.462 29.44 20.94 38.38 3.34
2618 6808 6.472163 CCGCCTGTCATAAACATGTTTAAATC 59.528 38.462 29.44 21.75 38.38 2.17
2619 6809 6.329496 CCGCCTGTCATAAACATGTTTAAAT 58.671 36.000 29.44 16.12 38.38 1.40
2620 6810 5.336055 CCCGCCTGTCATAAACATGTTTAAA 60.336 40.000 29.44 19.66 38.38 1.52
2621 6811 4.156922 CCCGCCTGTCATAAACATGTTTAA 59.843 41.667 29.44 15.20 38.38 1.52
2622 6812 3.692101 CCCGCCTGTCATAAACATGTTTA 59.308 43.478 28.30 28.30 37.23 2.01
2623 6813 2.491693 CCCGCCTGTCATAAACATGTTT 59.508 45.455 25.99 25.99 37.23 2.83
2624 6814 2.091541 CCCGCCTGTCATAAACATGTT 58.908 47.619 4.92 4.92 37.23 2.71
2625 6815 1.681780 CCCCGCCTGTCATAAACATGT 60.682 52.381 0.00 0.00 37.23 3.21
2626 6816 1.024271 CCCCGCCTGTCATAAACATG 58.976 55.000 0.00 0.00 37.23 3.21
2627 6817 0.751643 GCCCCGCCTGTCATAAACAT 60.752 55.000 0.00 0.00 37.23 2.71
2628 6818 1.377987 GCCCCGCCTGTCATAAACA 60.378 57.895 0.00 0.00 36.18 2.83
2629 6819 2.119029 GGCCCCGCCTGTCATAAAC 61.119 63.158 0.00 0.00 46.69 2.01
2630 6820 2.274104 GGCCCCGCCTGTCATAAA 59.726 61.111 0.00 0.00 46.69 1.40
2640 6830 1.176619 AAAAACACTAGTGGCCCCGC 61.177 55.000 26.12 0.00 34.19 6.13
2641 6831 3.030415 AAAAACACTAGTGGCCCCG 57.970 52.632 26.12 0.74 34.19 5.73
2656 6846 2.037121 GCTAGGGGCTTTTCTGCAAAAA 59.963 45.455 0.00 0.00 38.06 1.94
2657 6847 1.618343 GCTAGGGGCTTTTCTGCAAAA 59.382 47.619 0.00 0.00 38.06 2.44
2658 6848 1.256812 GCTAGGGGCTTTTCTGCAAA 58.743 50.000 0.00 0.00 38.06 3.68
2659 6849 0.112218 TGCTAGGGGCTTTTCTGCAA 59.888 50.000 0.00 0.00 42.39 4.08
2660 6850 0.609131 GTGCTAGGGGCTTTTCTGCA 60.609 55.000 0.00 0.00 42.39 4.41
2661 6851 0.322906 AGTGCTAGGGGCTTTTCTGC 60.323 55.000 0.00 0.00 42.39 4.26
2662 6852 2.237392 AGTAGTGCTAGGGGCTTTTCTG 59.763 50.000 0.00 0.00 42.39 3.02
2663 6853 2.552367 AGTAGTGCTAGGGGCTTTTCT 58.448 47.619 0.00 0.00 42.39 2.52
2664 6854 4.691326 ATAGTAGTGCTAGGGGCTTTTC 57.309 45.455 0.00 0.00 42.39 2.29
2665 6855 6.570654 TTAATAGTAGTGCTAGGGGCTTTT 57.429 37.500 0.00 0.00 42.39 2.27
2666 6856 6.329197 TGATTAATAGTAGTGCTAGGGGCTTT 59.671 38.462 0.00 0.00 42.39 3.51
2667 6857 5.844516 TGATTAATAGTAGTGCTAGGGGCTT 59.155 40.000 0.00 0.00 42.39 4.35
2668 6858 5.246429 GTGATTAATAGTAGTGCTAGGGGCT 59.754 44.000 0.00 0.00 42.39 5.19
2669 6859 5.480205 GTGATTAATAGTAGTGCTAGGGGC 58.520 45.833 0.00 0.00 42.22 5.80
2670 6860 5.710984 CGTGATTAATAGTAGTGCTAGGGG 58.289 45.833 0.00 0.00 32.45 4.79
2671 6861 5.162075 GCGTGATTAATAGTAGTGCTAGGG 58.838 45.833 0.00 0.00 32.45 3.53
2672 6862 5.629849 GTGCGTGATTAATAGTAGTGCTAGG 59.370 44.000 0.00 0.00 32.45 3.02
2673 6863 6.206498 TGTGCGTGATTAATAGTAGTGCTAG 58.794 40.000 0.00 0.00 32.45 3.42
2674 6864 6.139048 TGTGCGTGATTAATAGTAGTGCTA 57.861 37.500 0.00 0.00 0.00 3.49
2675 6865 5.006153 TGTGCGTGATTAATAGTAGTGCT 57.994 39.130 0.00 0.00 0.00 4.40
2676 6866 5.670097 CATGTGCGTGATTAATAGTAGTGC 58.330 41.667 0.00 0.00 0.00 4.40
2677 6867 5.333339 GGCATGTGCGTGATTAATAGTAGTG 60.333 44.000 0.00 0.00 43.26 2.74
2678 6868 4.750098 GGCATGTGCGTGATTAATAGTAGT 59.250 41.667 0.00 0.00 43.26 2.73
2679 6869 4.152402 GGGCATGTGCGTGATTAATAGTAG 59.848 45.833 0.00 0.00 43.26 2.57
2680 6870 4.062293 GGGCATGTGCGTGATTAATAGTA 58.938 43.478 0.00 0.00 43.26 1.82
2681 6871 2.878406 GGGCATGTGCGTGATTAATAGT 59.122 45.455 0.00 0.00 43.26 2.12
2682 6872 2.877786 TGGGCATGTGCGTGATTAATAG 59.122 45.455 0.00 0.00 43.26 1.73
2683 6873 2.924421 TGGGCATGTGCGTGATTAATA 58.076 42.857 0.00 0.00 43.26 0.98
2684 6874 1.761449 TGGGCATGTGCGTGATTAAT 58.239 45.000 0.00 0.00 43.26 1.40
2685 6875 1.761449 ATGGGCATGTGCGTGATTAA 58.239 45.000 0.00 0.00 43.26 1.40
2686 6876 1.404748 CAATGGGCATGTGCGTGATTA 59.595 47.619 0.00 0.00 43.26 1.75
2687 6877 0.173935 CAATGGGCATGTGCGTGATT 59.826 50.000 0.00 0.00 43.26 2.57
2688 6878 1.811195 CAATGGGCATGTGCGTGAT 59.189 52.632 0.00 0.00 43.26 3.06
2689 6879 2.992273 GCAATGGGCATGTGCGTGA 61.992 57.895 0.00 0.00 43.97 4.35
2690 6880 2.507547 GCAATGGGCATGTGCGTG 60.508 61.111 0.00 0.00 43.97 5.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.