Multiple sequence alignment - TraesCS2D01G563300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G563300 chr2D 100.000 4587 0 0 1 4587 634644143 634648729 0.000000e+00 8471.0
1 TraesCS2D01G563300 chr2D 94.682 677 21 9 3913 4587 447870721 447870058 0.000000e+00 1037.0
2 TraesCS2D01G563300 chr1B 94.501 3019 132 17 898 3909 637915586 637912595 0.000000e+00 4625.0
3 TraesCS2D01G563300 chr1D 95.341 2919 102 21 898 3806 462968195 462965301 0.000000e+00 4606.0
4 TraesCS2D01G563300 chr1D 94.107 2138 104 20 898 3024 462890811 462888685 0.000000e+00 3230.0
5 TraesCS2D01G563300 chr1D 94.107 2138 103 20 898 3024 462888243 462886118 0.000000e+00 3229.0
6 TraesCS2D01G563300 chr1D 93.873 2138 111 16 898 3024 462893382 462891254 0.000000e+00 3205.0
7 TraesCS2D01G563300 chr1D 93.797 2144 105 23 898 3024 462932369 462930237 0.000000e+00 3197.0
8 TraesCS2D01G563300 chr1D 93.689 2139 114 17 898 3024 462898497 462896368 0.000000e+00 3182.0
9 TraesCS2D01G563300 chr1D 93.762 2132 113 15 898 3024 462934929 462932813 0.000000e+00 3182.0
10 TraesCS2D01G563300 chr1D 93.554 2141 108 18 898 3024 462913884 462911760 0.000000e+00 3162.0
11 TraesCS2D01G563300 chr1D 93.508 2141 108 18 898 3024 462921111 462918988 0.000000e+00 3155.0
12 TraesCS2D01G563300 chr1D 94.035 1844 90 17 1191 3024 462910976 462909143 0.000000e+00 2778.0
13 TraesCS2D01G563300 chr1D 95.170 352 17 0 898 1249 462911317 462910966 1.440000e-154 556.0
14 TraesCS2D01G563300 chr3B 95.824 1317 40 5 2604 3906 397678494 397677179 0.000000e+00 2113.0
15 TraesCS2D01G563300 chr6D 95.906 684 18 2 3913 4587 49187896 49187214 0.000000e+00 1099.0
16 TraesCS2D01G563300 chr6D 95.203 688 21 5 3910 4587 48460300 48460985 0.000000e+00 1077.0
17 TraesCS2D01G563300 chr6D 95.468 684 16 2 3913 4587 379889888 379889211 0.000000e+00 1077.0
18 TraesCS2D01G563300 chr5D 95.468 684 16 2 3912 4586 389509883 389509206 0.000000e+00 1077.0
19 TraesCS2D01G563300 chr7D 95.322 684 17 2 3913 4587 602039742 602040419 0.000000e+00 1072.0
20 TraesCS2D01G563300 chrUn 94.591 684 22 2 3913 4587 22752057 22751380 0.000000e+00 1044.0
21 TraesCS2D01G563300 chrUn 94.000 50 2 1 7 55 344814602 344814651 1.770000e-09 75.0
22 TraesCS2D01G563300 chrUn 94.000 50 2 1 7 55 349682134 349682183 1.770000e-09 75.0
23 TraesCS2D01G563300 chr3D 87.542 899 72 16 2612 3494 321872168 321873042 0.000000e+00 1003.0
24 TraesCS2D01G563300 chr3D 96.117 309 11 1 3599 3906 321873079 321873387 1.900000e-138 503.0
25 TraesCS2D01G563300 chr3A 87.458 901 66 22 2612 3494 402135967 402135096 0.000000e+00 994.0
26 TraesCS2D01G563300 chr3A 93.485 307 17 1 3606 3909 402135052 402134746 1.950000e-123 453.0
27 TraesCS2D01G563300 chr3A 89.362 47 5 0 54 100 704451313 704451359 4.960000e-05 60.2
28 TraesCS2D01G563300 chr6B 91.379 696 35 2 3915 4585 279586033 279586728 0.000000e+00 929.0
29 TraesCS2D01G563300 chr6B 90.714 700 34 4 3915 4587 526023015 526023710 0.000000e+00 904.0
30 TraesCS2D01G563300 chr6B 91.529 543 27 8 3915 4438 433073708 433074250 0.000000e+00 730.0
31 TraesCS2D01G563300 chr6B 94.000 50 2 1 7 55 689104450 689104499 1.770000e-09 75.0
32 TraesCS2D01G563300 chr6B 94.000 50 2 1 7 55 689125338 689125387 1.770000e-09 75.0
33 TraesCS2D01G563300 chr1A 91.853 491 21 7 3915 4386 374248787 374249277 0.000000e+00 667.0
34 TraesCS2D01G563300 chr2B 88.552 297 20 4 342 625 777657146 777657441 9.450000e-92 348.0
35 TraesCS2D01G563300 chr2B 94.631 149 8 0 130 278 777656694 777656842 9.920000e-57 231.0
36 TraesCS2D01G563300 chr2B 100.000 42 0 0 626 667 777632215 777632256 1.370000e-10 78.7
37 TraesCS2D01G563300 chr2B 100.000 41 0 0 627 667 777657717 777657757 4.920000e-10 76.8
38 TraesCS2D01G563300 chr4A 91.810 232 17 1 667 898 703574341 703574112 5.720000e-84 322.0
39 TraesCS2D01G563300 chr4A 91.379 232 18 1 667 898 703628953 703628724 2.660000e-82 316.0
40 TraesCS2D01G563300 chr2A 93.264 193 11 2 112 304 778790994 778790804 2.700000e-72 283.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G563300 chr2D 634644143 634648729 4586 False 8471.000000 8471 100.000000 1 4587 1 chr2D.!!$F1 4586
1 TraesCS2D01G563300 chr2D 447870058 447870721 663 True 1037.000000 1037 94.682000 3913 4587 1 chr2D.!!$R1 674
2 TraesCS2D01G563300 chr1B 637912595 637915586 2991 True 4625.000000 4625 94.501000 898 3909 1 chr1B.!!$R1 3011
3 TraesCS2D01G563300 chr1D 462965301 462968195 2894 True 4606.000000 4606 95.341000 898 3806 1 chr1D.!!$R2 2908
4 TraesCS2D01G563300 chr1D 462886118 462898497 12379 True 3211.500000 3230 93.944000 898 3024 4 chr1D.!!$R3 2126
5 TraesCS2D01G563300 chr1D 462930237 462934929 4692 True 3189.500000 3197 93.779500 898 3024 2 chr1D.!!$R5 2126
6 TraesCS2D01G563300 chr1D 462918988 462921111 2123 True 3155.000000 3155 93.508000 898 3024 1 chr1D.!!$R1 2126
7 TraesCS2D01G563300 chr1D 462909143 462913884 4741 True 2165.333333 3162 94.253000 898 3024 3 chr1D.!!$R4 2126
8 TraesCS2D01G563300 chr3B 397677179 397678494 1315 True 2113.000000 2113 95.824000 2604 3906 1 chr3B.!!$R1 1302
9 TraesCS2D01G563300 chr6D 49187214 49187896 682 True 1099.000000 1099 95.906000 3913 4587 1 chr6D.!!$R1 674
10 TraesCS2D01G563300 chr6D 48460300 48460985 685 False 1077.000000 1077 95.203000 3910 4587 1 chr6D.!!$F1 677
11 TraesCS2D01G563300 chr6D 379889211 379889888 677 True 1077.000000 1077 95.468000 3913 4587 1 chr6D.!!$R2 674
12 TraesCS2D01G563300 chr5D 389509206 389509883 677 True 1077.000000 1077 95.468000 3912 4586 1 chr5D.!!$R1 674
13 TraesCS2D01G563300 chr7D 602039742 602040419 677 False 1072.000000 1072 95.322000 3913 4587 1 chr7D.!!$F1 674
14 TraesCS2D01G563300 chrUn 22751380 22752057 677 True 1044.000000 1044 94.591000 3913 4587 1 chrUn.!!$R1 674
15 TraesCS2D01G563300 chr3D 321872168 321873387 1219 False 753.000000 1003 91.829500 2612 3906 2 chr3D.!!$F1 1294
16 TraesCS2D01G563300 chr3A 402134746 402135967 1221 True 723.500000 994 90.471500 2612 3909 2 chr3A.!!$R1 1297
17 TraesCS2D01G563300 chr6B 279586033 279586728 695 False 929.000000 929 91.379000 3915 4585 1 chr6B.!!$F1 670
18 TraesCS2D01G563300 chr6B 526023015 526023710 695 False 904.000000 904 90.714000 3915 4587 1 chr6B.!!$F3 672
19 TraesCS2D01G563300 chr6B 433073708 433074250 542 False 730.000000 730 91.529000 3915 4438 1 chr6B.!!$F2 523
20 TraesCS2D01G563300 chr2B 777656694 777657757 1063 False 218.600000 348 94.394333 130 667 3 chr2B.!!$F2 537

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
873 1148 0.034896 TGACTGGACCGGAAAAGAGC 59.965 55.0 9.46 1.05 0.0 4.09 F
877 1152 0.034896 TGGACCGGAAAAGAGCTGTC 59.965 55.0 9.46 0.00 0.0 3.51 F
1627 1902 0.103937 TGCATCGATCGCCACACATA 59.896 50.0 11.09 0.00 0.0 2.29 F
2479 10471 0.245539 TCAGACTAAAACCGCCCGAG 59.754 55.0 0.00 0.00 0.0 4.63 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2460 10452 0.245539 CTCGGGCGGTTTTAGTCTGA 59.754 55.000 0.00 0.0 0.0 3.27 R
2810 15960 0.321564 TGTGACTCAATTCGCTGGGG 60.322 55.000 0.00 0.0 0.0 4.96 R
3299 16476 1.607467 AACCCCTGATGTGCTTGGC 60.607 57.895 0.00 0.0 0.0 4.52 R
4304 17536 3.133365 AACTCCCGGCCAGCAAACT 62.133 57.895 2.24 0.0 0.0 2.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.364686 GGGGGTGGGGGAGGAGAA 62.365 72.222 0.00 0.00 0.00 2.87
22 23 2.692741 GGGGTGGGGGAGGAGAAG 60.693 72.222 0.00 0.00 0.00 2.85
23 24 2.692741 GGGTGGGGGAGGAGAAGG 60.693 72.222 0.00 0.00 0.00 3.46
24 25 2.692741 GGTGGGGGAGGAGAAGGG 60.693 72.222 0.00 0.00 0.00 3.95
25 26 2.692741 GTGGGGGAGGAGAAGGGG 60.693 72.222 0.00 0.00 0.00 4.79
26 27 2.879490 TGGGGGAGGAGAAGGGGA 60.879 66.667 0.00 0.00 0.00 4.81
27 28 2.459710 GGGGGAGGAGAAGGGGAA 59.540 66.667 0.00 0.00 0.00 3.97
28 29 2.001838 GGGGGAGGAGAAGGGGAAC 61.002 68.421 0.00 0.00 0.00 3.62
29 30 2.368011 GGGGAGGAGAAGGGGAACG 61.368 68.421 0.00 0.00 0.00 3.95
30 31 2.585153 GGAGGAGAAGGGGAACGC 59.415 66.667 0.00 0.00 43.76 4.84
40 41 4.468689 GGGAACGCGAGGGGGAAG 62.469 72.222 15.93 0.00 0.00 3.46
41 42 4.468689 GGAACGCGAGGGGGAAGG 62.469 72.222 15.93 0.00 0.00 3.46
42 43 4.468689 GAACGCGAGGGGGAAGGG 62.469 72.222 15.93 0.00 0.00 3.95
85 86 2.901042 GTGGAACCCTAGGAGCGG 59.099 66.667 11.48 0.00 0.00 5.52
87 88 3.162154 GGAACCCTAGGAGCGGGG 61.162 72.222 11.48 0.00 46.40 5.73
88 89 2.042230 GAACCCTAGGAGCGGGGA 60.042 66.667 11.48 0.00 46.40 4.81
89 90 2.041819 AACCCTAGGAGCGGGGAG 60.042 66.667 11.48 0.00 46.40 4.30
90 91 4.862823 ACCCTAGGAGCGGGGAGC 62.863 72.222 11.48 0.00 46.40 4.70
120 121 3.407967 GGGAACGGGCTGGATCCA 61.408 66.667 15.27 15.27 33.48 3.41
121 122 2.124695 GGAACGGGCTGGATCCAC 60.125 66.667 11.44 8.06 32.08 4.02
122 123 2.668632 GAACGGGCTGGATCCACA 59.331 61.111 11.44 0.00 0.00 4.17
123 124 1.745489 GAACGGGCTGGATCCACAC 60.745 63.158 11.44 8.42 0.00 3.82
124 125 2.463589 GAACGGGCTGGATCCACACA 62.464 60.000 11.44 0.00 0.00 3.72
125 126 1.852157 AACGGGCTGGATCCACACAT 61.852 55.000 11.44 0.00 0.00 3.21
126 127 0.980754 ACGGGCTGGATCCACACATA 60.981 55.000 11.44 0.00 0.00 2.29
127 128 0.397941 CGGGCTGGATCCACACATAT 59.602 55.000 11.44 0.00 0.00 1.78
128 129 1.879372 CGGGCTGGATCCACACATATG 60.879 57.143 11.44 0.00 0.00 1.78
144 145 9.013229 CCACACATATGCATATACCAAAGTTAT 57.987 33.333 18.70 0.68 0.00 1.89
217 218 1.901650 GCAGCAACGGTAGCAGTGAC 61.902 60.000 0.00 0.00 0.00 3.67
253 254 3.243704 TGCAAAATTTGAAGACGAAGGGG 60.244 43.478 10.26 0.00 0.00 4.79
278 279 2.516930 CATGGGTGGCCACGATCC 60.517 66.667 29.08 23.96 0.00 3.36
292 554 3.062099 CCACGATCCATAACTCAAACGTG 59.938 47.826 0.00 0.00 45.61 4.49
312 574 1.502640 GACTGAGTGTCGCGCTAGT 59.497 57.895 5.56 0.00 35.81 2.57
321 583 0.289981 GTCGCGCTAGTCGTTAAACG 59.710 55.000 5.56 0.00 44.19 3.60
322 584 1.015143 CGCGCTAGTCGTTAAACGC 60.015 57.895 5.56 0.00 42.21 4.84
323 585 1.015143 GCGCTAGTCGTTAAACGCG 60.015 57.895 3.53 3.53 42.21 6.01
324 586 1.015143 CGCTAGTCGTTAAACGCGC 60.015 57.895 5.73 0.00 42.21 6.86
325 587 1.342810 GCTAGTCGTTAAACGCGCC 59.657 57.895 5.73 0.00 42.21 6.53
326 588 1.622269 CTAGTCGTTAAACGCGCCG 59.378 57.895 5.73 0.00 42.21 6.46
327 589 0.794229 CTAGTCGTTAAACGCGCCGA 60.794 55.000 5.73 0.00 42.21 5.54
328 590 2.092696 GTCGTTAAACGCGCCGAC 59.907 61.111 16.54 16.54 42.21 4.79
329 591 3.460278 TCGTTAAACGCGCCGACG 61.460 61.111 5.73 12.32 42.21 5.12
330 592 3.460278 CGTTAAACGCGCCGACGA 61.460 61.111 16.44 0.00 42.48 4.20
331 593 2.092696 GTTAAACGCGCCGACGAC 59.907 61.111 5.73 0.00 43.93 4.34
332 594 3.460278 TTAAACGCGCCGACGACG 61.460 61.111 5.73 0.00 43.93 5.12
372 634 1.689273 AGCCGAGAGCCCTATGTAAAG 59.311 52.381 0.00 0.00 45.47 1.85
379 641 1.415289 AGCCCTATGTAAAGCGGGTAC 59.585 52.381 0.00 0.00 38.97 3.34
390 652 8.751302 ATGTAAAGCGGGTACTTTTAAATTTG 57.249 30.769 0.00 0.00 40.32 2.32
391 653 7.938715 TGTAAAGCGGGTACTTTTAAATTTGA 58.061 30.769 0.00 0.00 40.32 2.69
400 662 8.040727 GGGTACTTTTAAATTTGATGCCAAGAT 58.959 33.333 0.00 0.00 33.23 2.40
436 698 2.901839 AGGTGTTTTTCTACGGCCTCTA 59.098 45.455 0.00 0.00 0.00 2.43
437 699 2.998670 GGTGTTTTTCTACGGCCTCTAC 59.001 50.000 0.00 0.00 0.00 2.59
481 755 0.943673 TGTGTGTGCTTTGATCGGTG 59.056 50.000 0.00 0.00 0.00 4.94
505 779 5.068234 TCGACTTACACCATTTCGAGAAT 57.932 39.130 0.00 0.00 33.95 2.40
507 781 6.032094 TCGACTTACACCATTTCGAGAATAC 58.968 40.000 0.00 0.00 33.95 1.89
536 810 2.154462 ACACTTGGCTAACATGCAGAC 58.846 47.619 0.00 0.00 34.04 3.51
597 872 7.971455 ACCTTTGTTTTATTAGATACAGACGC 58.029 34.615 0.00 0.00 0.00 5.19
605 880 1.407936 AGATACAGACGCAGGCTCAT 58.592 50.000 0.00 0.00 0.00 2.90
620 895 5.001874 CAGGCTCATGCATATACATTCACT 58.998 41.667 0.00 0.00 41.91 3.41
625 900 7.148507 GGCTCATGCATATACATTCACTTCTAC 60.149 40.741 0.00 0.00 41.91 2.59
626 901 7.386025 GCTCATGCATATACATTCACTTCTACA 59.614 37.037 0.00 0.00 39.41 2.74
661 936 9.640963 AGTACTTAACAACTGTATCTCATGAAC 57.359 33.333 0.00 0.00 0.00 3.18
662 937 9.640963 GTACTTAACAACTGTATCTCATGAACT 57.359 33.333 0.00 0.00 0.00 3.01
664 939 9.561069 ACTTAACAACTGTATCTCATGAACTTT 57.439 29.630 0.00 0.00 0.00 2.66
666 941 9.778741 TTAACAACTGTATCTCATGAACTTTCT 57.221 29.630 0.00 0.00 0.00 2.52
667 942 7.664082 ACAACTGTATCTCATGAACTTTCTG 57.336 36.000 0.00 0.00 0.00 3.02
668 943 7.220030 ACAACTGTATCTCATGAACTTTCTGT 58.780 34.615 0.00 0.00 0.00 3.41
669 944 7.716998 ACAACTGTATCTCATGAACTTTCTGTT 59.283 33.333 0.00 1.34 42.38 3.16
670 945 7.664082 ACTGTATCTCATGAACTTTCTGTTG 57.336 36.000 0.00 0.00 39.30 3.33
671 946 6.652481 ACTGTATCTCATGAACTTTCTGTTGG 59.348 38.462 0.00 0.00 39.30 3.77
672 947 6.768483 TGTATCTCATGAACTTTCTGTTGGA 58.232 36.000 0.00 0.00 39.30 3.53
673 948 7.397221 TGTATCTCATGAACTTTCTGTTGGAT 58.603 34.615 0.00 0.00 39.30 3.41
674 949 8.539544 TGTATCTCATGAACTTTCTGTTGGATA 58.460 33.333 0.00 0.00 39.30 2.59
675 950 9.383519 GTATCTCATGAACTTTCTGTTGGATAA 57.616 33.333 0.00 0.00 39.30 1.75
677 952 8.498054 TCTCATGAACTTTCTGTTGGATAATC 57.502 34.615 0.00 0.00 39.30 1.75
678 953 7.554118 TCTCATGAACTTTCTGTTGGATAATCC 59.446 37.037 0.00 0.00 39.30 3.01
679 954 7.174413 TCATGAACTTTCTGTTGGATAATCCA 58.826 34.615 0.00 0.00 46.61 3.41
691 966 5.070770 TGGATAATCCAAACATGTGTTGC 57.929 39.130 0.00 0.00 45.00 4.17
692 967 4.525874 TGGATAATCCAAACATGTGTTGCA 59.474 37.500 0.00 0.00 45.00 4.08
693 968 5.011431 TGGATAATCCAAACATGTGTTGCAA 59.989 36.000 0.00 0.00 45.00 4.08
694 969 5.577945 GGATAATCCAAACATGTGTTGCAAG 59.422 40.000 0.00 0.00 38.44 4.01
695 970 2.886862 TCCAAACATGTGTTGCAAGG 57.113 45.000 0.00 0.00 38.44 3.61
696 971 2.382882 TCCAAACATGTGTTGCAAGGA 58.617 42.857 0.00 0.00 38.44 3.36
697 972 2.964464 TCCAAACATGTGTTGCAAGGAT 59.036 40.909 0.00 0.00 38.44 3.24
698 973 3.387374 TCCAAACATGTGTTGCAAGGATT 59.613 39.130 0.00 0.00 38.44 3.01
699 974 4.586421 TCCAAACATGTGTTGCAAGGATTA 59.414 37.500 0.00 0.00 38.44 1.75
700 975 4.925054 CCAAACATGTGTTGCAAGGATTAG 59.075 41.667 0.00 0.00 38.44 1.73
701 976 4.789012 AACATGTGTTGCAAGGATTAGG 57.211 40.909 0.00 0.00 36.80 2.69
702 977 3.766545 ACATGTGTTGCAAGGATTAGGT 58.233 40.909 0.00 0.00 0.00 3.08
703 978 4.917385 ACATGTGTTGCAAGGATTAGGTA 58.083 39.130 0.00 0.00 0.00 3.08
704 979 5.321102 ACATGTGTTGCAAGGATTAGGTAA 58.679 37.500 0.00 0.00 0.00 2.85
705 980 5.415701 ACATGTGTTGCAAGGATTAGGTAAG 59.584 40.000 0.00 0.00 0.00 2.34
706 981 4.980573 TGTGTTGCAAGGATTAGGTAAGT 58.019 39.130 0.00 0.00 0.00 2.24
707 982 5.381757 TGTGTTGCAAGGATTAGGTAAGTT 58.618 37.500 0.00 0.00 0.00 2.66
708 983 5.830991 TGTGTTGCAAGGATTAGGTAAGTTT 59.169 36.000 0.00 0.00 0.00 2.66
709 984 6.149633 GTGTTGCAAGGATTAGGTAAGTTTG 58.850 40.000 0.00 0.00 0.00 2.93
710 985 6.016610 GTGTTGCAAGGATTAGGTAAGTTTGA 60.017 38.462 0.00 0.00 0.00 2.69
711 986 6.206634 TGTTGCAAGGATTAGGTAAGTTTGAG 59.793 38.462 0.00 0.00 0.00 3.02
712 987 5.876357 TGCAAGGATTAGGTAAGTTTGAGT 58.124 37.500 0.00 0.00 0.00 3.41
713 988 6.303839 TGCAAGGATTAGGTAAGTTTGAGTT 58.696 36.000 0.00 0.00 0.00 3.01
714 989 7.455058 TGCAAGGATTAGGTAAGTTTGAGTTA 58.545 34.615 0.00 0.00 0.00 2.24
715 990 7.606456 TGCAAGGATTAGGTAAGTTTGAGTTAG 59.394 37.037 0.00 0.00 0.00 2.34
716 991 7.606839 GCAAGGATTAGGTAAGTTTGAGTTAGT 59.393 37.037 0.00 0.00 0.00 2.24
717 992 9.503399 CAAGGATTAGGTAAGTTTGAGTTAGTT 57.497 33.333 0.00 0.00 0.00 2.24
719 994 9.722184 AGGATTAGGTAAGTTTGAGTTAGTTTC 57.278 33.333 0.00 0.00 0.00 2.78
720 995 8.944029 GGATTAGGTAAGTTTGAGTTAGTTTCC 58.056 37.037 0.00 0.00 0.00 3.13
721 996 9.722184 GATTAGGTAAGTTTGAGTTAGTTTCCT 57.278 33.333 0.00 0.00 32.53 3.36
724 999 8.260099 AGGTAAGTTTGAGTTAGTTTCCTAGT 57.740 34.615 0.00 0.00 0.00 2.57
725 1000 8.366401 AGGTAAGTTTGAGTTAGTTTCCTAGTC 58.634 37.037 0.00 0.00 0.00 2.59
726 1001 7.601886 GGTAAGTTTGAGTTAGTTTCCTAGTCC 59.398 40.741 0.00 0.00 0.00 3.85
727 1002 6.742559 AGTTTGAGTTAGTTTCCTAGTCCA 57.257 37.500 0.00 0.00 0.00 4.02
728 1003 7.133133 AGTTTGAGTTAGTTTCCTAGTCCAA 57.867 36.000 0.00 0.00 0.00 3.53
729 1004 6.990939 AGTTTGAGTTAGTTTCCTAGTCCAAC 59.009 38.462 0.00 0.00 0.00 3.77
730 1005 6.742559 TTGAGTTAGTTTCCTAGTCCAACT 57.257 37.500 4.42 4.42 35.00 3.16
731 1006 6.097915 TGAGTTAGTTTCCTAGTCCAACTG 57.902 41.667 8.14 0.00 32.88 3.16
732 1007 5.601313 TGAGTTAGTTTCCTAGTCCAACTGT 59.399 40.000 8.14 0.00 32.88 3.55
733 1008 6.779049 TGAGTTAGTTTCCTAGTCCAACTGTA 59.221 38.462 8.14 0.00 32.88 2.74
734 1009 7.039923 TGAGTTAGTTTCCTAGTCCAACTGTAG 60.040 40.741 8.14 0.00 32.88 2.74
735 1010 6.210984 AGTTAGTTTCCTAGTCCAACTGTAGG 59.789 42.308 8.14 0.00 32.88 3.18
736 1011 3.838903 AGTTTCCTAGTCCAACTGTAGGG 59.161 47.826 0.00 0.00 27.45 3.53
737 1012 2.544844 TCCTAGTCCAACTGTAGGGG 57.455 55.000 0.00 0.00 27.45 4.79
738 1013 1.720533 TCCTAGTCCAACTGTAGGGGT 59.279 52.381 0.00 0.00 27.45 4.95
739 1014 1.831736 CCTAGTCCAACTGTAGGGGTG 59.168 57.143 0.00 0.00 0.00 4.61
740 1015 1.831736 CTAGTCCAACTGTAGGGGTGG 59.168 57.143 0.00 0.00 0.00 4.61
741 1016 0.840722 AGTCCAACTGTAGGGGTGGG 60.841 60.000 0.00 0.00 0.00 4.61
742 1017 0.838987 GTCCAACTGTAGGGGTGGGA 60.839 60.000 0.00 0.00 34.68 4.37
743 1018 0.104356 TCCAACTGTAGGGGTGGGAA 60.104 55.000 0.00 0.00 34.19 3.97
744 1019 0.999712 CCAACTGTAGGGGTGGGAAT 59.000 55.000 0.00 0.00 29.49 3.01
745 1020 2.201830 CCAACTGTAGGGGTGGGAATA 58.798 52.381 0.00 0.00 29.49 1.75
746 1021 2.092592 CCAACTGTAGGGGTGGGAATAC 60.093 54.545 0.00 0.00 29.49 1.89
747 1022 2.844348 CAACTGTAGGGGTGGGAATACT 59.156 50.000 0.00 0.00 0.00 2.12
748 1023 4.035112 CAACTGTAGGGGTGGGAATACTA 58.965 47.826 0.00 0.00 0.00 1.82
749 1024 3.650948 ACTGTAGGGGTGGGAATACTAC 58.349 50.000 0.00 0.00 35.71 2.73
750 1025 3.274153 ACTGTAGGGGTGGGAATACTACT 59.726 47.826 0.00 0.00 36.04 2.57
751 1026 3.896272 CTGTAGGGGTGGGAATACTACTC 59.104 52.174 0.00 0.00 36.04 2.59
752 1027 2.491312 AGGGGTGGGAATACTACTCC 57.509 55.000 0.00 0.00 35.12 3.85
753 1028 1.654997 AGGGGTGGGAATACTACTCCA 59.345 52.381 0.00 0.00 37.43 3.86
754 1029 2.047830 GGGGTGGGAATACTACTCCAG 58.952 57.143 0.00 0.00 35.01 3.86
755 1030 2.047830 GGGTGGGAATACTACTCCAGG 58.952 57.143 0.00 0.00 34.34 4.45
756 1031 2.628829 GGGTGGGAATACTACTCCAGGT 60.629 54.545 0.00 0.00 34.34 4.00
757 1032 3.374540 GGGTGGGAATACTACTCCAGGTA 60.375 52.174 0.00 0.00 34.34 3.08
767 1042 2.016905 ACTCCAGGTAGAGTTGCACT 57.983 50.000 0.00 0.00 44.83 4.40
768 1043 2.330216 ACTCCAGGTAGAGTTGCACTT 58.670 47.619 0.00 0.00 44.83 3.16
769 1044 3.507411 ACTCCAGGTAGAGTTGCACTTA 58.493 45.455 0.00 0.00 44.83 2.24
770 1045 3.511934 ACTCCAGGTAGAGTTGCACTTAG 59.488 47.826 0.00 0.00 44.83 2.18
771 1046 3.764434 CTCCAGGTAGAGTTGCACTTAGA 59.236 47.826 0.00 0.00 0.00 2.10
772 1047 3.510360 TCCAGGTAGAGTTGCACTTAGAC 59.490 47.826 0.00 0.00 0.00 2.59
773 1048 3.502920 CAGGTAGAGTTGCACTTAGACG 58.497 50.000 0.00 0.00 0.00 4.18
774 1049 3.057456 CAGGTAGAGTTGCACTTAGACGT 60.057 47.826 0.00 0.00 0.00 4.34
775 1050 3.057456 AGGTAGAGTTGCACTTAGACGTG 60.057 47.826 0.00 0.00 37.94 4.49
776 1051 3.305199 GGTAGAGTTGCACTTAGACGTGT 60.305 47.826 0.00 0.00 37.24 4.49
777 1052 3.014604 AGAGTTGCACTTAGACGTGTC 57.985 47.619 0.00 0.00 37.24 3.67
778 1053 2.361119 AGAGTTGCACTTAGACGTGTCA 59.639 45.455 0.00 0.00 37.24 3.58
779 1054 3.005897 AGAGTTGCACTTAGACGTGTCAT 59.994 43.478 0.00 0.00 37.24 3.06
780 1055 4.217767 AGAGTTGCACTTAGACGTGTCATA 59.782 41.667 0.00 0.00 37.24 2.15
781 1056 4.486090 AGTTGCACTTAGACGTGTCATAG 58.514 43.478 0.00 1.82 37.24 2.23
782 1057 4.022242 AGTTGCACTTAGACGTGTCATAGT 60.022 41.667 0.00 2.42 37.24 2.12
783 1058 5.182570 AGTTGCACTTAGACGTGTCATAGTA 59.817 40.000 0.00 0.00 37.24 1.82
784 1059 5.231265 TGCACTTAGACGTGTCATAGTAG 57.769 43.478 0.00 2.58 37.24 2.57
785 1060 4.698780 TGCACTTAGACGTGTCATAGTAGT 59.301 41.667 0.00 0.00 37.24 2.73
786 1061 5.876460 TGCACTTAGACGTGTCATAGTAGTA 59.124 40.000 0.00 0.00 37.24 1.82
787 1062 6.541278 TGCACTTAGACGTGTCATAGTAGTAT 59.459 38.462 0.00 0.00 37.24 2.12
788 1063 7.712205 TGCACTTAGACGTGTCATAGTAGTATA 59.288 37.037 0.00 0.00 37.24 1.47
789 1064 8.008844 GCACTTAGACGTGTCATAGTAGTATAC 58.991 40.741 0.00 0.00 38.33 1.47
807 1082 9.434420 GTAGTATACGTATGAGTCAGATTAGGT 57.566 37.037 18.37 1.18 0.00 3.08
808 1083 8.550710 AGTATACGTATGAGTCAGATTAGGTC 57.449 38.462 18.37 0.00 0.00 3.85
809 1084 8.377034 AGTATACGTATGAGTCAGATTAGGTCT 58.623 37.037 18.37 0.00 37.80 3.85
810 1085 9.650539 GTATACGTATGAGTCAGATTAGGTCTA 57.349 37.037 18.37 0.00 34.69 2.59
812 1087 7.499321 ACGTATGAGTCAGATTAGGTCTAAG 57.501 40.000 0.00 0.00 34.69 2.18
813 1088 7.055378 ACGTATGAGTCAGATTAGGTCTAAGT 58.945 38.462 0.00 0.00 34.69 2.24
814 1089 7.556996 ACGTATGAGTCAGATTAGGTCTAAGTT 59.443 37.037 0.00 0.00 34.69 2.66
815 1090 7.858382 CGTATGAGTCAGATTAGGTCTAAGTTG 59.142 40.741 0.00 0.00 34.69 3.16
816 1091 6.531503 TGAGTCAGATTAGGTCTAAGTTGG 57.468 41.667 0.00 0.00 34.69 3.77
817 1092 5.422331 TGAGTCAGATTAGGTCTAAGTTGGG 59.578 44.000 0.00 0.00 34.69 4.12
818 1093 5.590818 AGTCAGATTAGGTCTAAGTTGGGA 58.409 41.667 0.00 0.00 34.69 4.37
819 1094 6.206042 AGTCAGATTAGGTCTAAGTTGGGAT 58.794 40.000 0.00 0.00 34.69 3.85
820 1095 6.325286 AGTCAGATTAGGTCTAAGTTGGGATC 59.675 42.308 0.00 0.00 34.69 3.36
821 1096 6.098409 GTCAGATTAGGTCTAAGTTGGGATCA 59.902 42.308 0.00 0.00 34.69 2.92
822 1097 6.325028 TCAGATTAGGTCTAAGTTGGGATCAG 59.675 42.308 0.00 0.00 34.69 2.90
823 1098 4.755266 TTAGGTCTAAGTTGGGATCAGC 57.245 45.455 0.00 0.00 0.00 4.26
824 1099 1.482593 AGGTCTAAGTTGGGATCAGCG 59.517 52.381 0.00 0.00 0.00 5.18
825 1100 1.207329 GGTCTAAGTTGGGATCAGCGT 59.793 52.381 0.00 0.00 0.00 5.07
826 1101 2.354805 GGTCTAAGTTGGGATCAGCGTT 60.355 50.000 0.00 0.00 0.00 4.84
827 1102 2.673368 GTCTAAGTTGGGATCAGCGTTG 59.327 50.000 0.00 0.00 0.00 4.10
828 1103 1.398390 CTAAGTTGGGATCAGCGTTGC 59.602 52.381 0.00 0.00 0.00 4.17
829 1104 1.244019 AAGTTGGGATCAGCGTTGCC 61.244 55.000 0.00 0.00 0.00 4.52
830 1105 2.745884 TTGGGATCAGCGTTGCCG 60.746 61.111 0.00 0.00 37.07 5.69
831 1106 3.247056 TTGGGATCAGCGTTGCCGA 62.247 57.895 0.00 0.00 35.63 5.54
832 1107 2.203070 GGGATCAGCGTTGCCGAT 60.203 61.111 0.00 0.00 35.63 4.18
833 1108 1.819632 GGGATCAGCGTTGCCGATT 60.820 57.895 0.00 0.00 35.63 3.34
834 1109 1.353103 GGATCAGCGTTGCCGATTG 59.647 57.895 0.00 0.00 35.63 2.67
835 1110 1.089481 GGATCAGCGTTGCCGATTGA 61.089 55.000 0.00 0.00 34.96 2.57
836 1111 0.940126 GATCAGCGTTGCCGATTGAT 59.060 50.000 0.00 0.00 40.38 2.57
837 1112 1.331756 GATCAGCGTTGCCGATTGATT 59.668 47.619 0.00 0.00 38.89 2.57
838 1113 2.017138 TCAGCGTTGCCGATTGATTA 57.983 45.000 0.00 0.00 35.63 1.75
839 1114 2.351455 TCAGCGTTGCCGATTGATTAA 58.649 42.857 0.00 0.00 35.63 1.40
840 1115 2.942376 TCAGCGTTGCCGATTGATTAAT 59.058 40.909 0.00 0.00 35.63 1.40
841 1116 3.376859 TCAGCGTTGCCGATTGATTAATT 59.623 39.130 0.00 0.00 35.63 1.40
842 1117 4.104776 CAGCGTTGCCGATTGATTAATTT 58.895 39.130 0.00 0.00 35.63 1.82
843 1118 5.065346 TCAGCGTTGCCGATTGATTAATTTA 59.935 36.000 0.00 0.00 35.63 1.40
844 1119 5.914635 CAGCGTTGCCGATTGATTAATTTAT 59.085 36.000 0.00 0.00 35.63 1.40
845 1120 7.041712 TCAGCGTTGCCGATTGATTAATTTATA 60.042 33.333 0.00 0.00 35.63 0.98
846 1121 7.269084 CAGCGTTGCCGATTGATTAATTTATAG 59.731 37.037 0.00 0.00 35.63 1.31
847 1122 6.523201 GCGTTGCCGATTGATTAATTTATAGG 59.477 38.462 0.00 0.00 35.63 2.57
848 1123 6.523201 CGTTGCCGATTGATTAATTTATAGGC 59.477 38.462 19.16 19.16 41.04 3.93
850 1125 7.517614 TGCCGATTGATTAATTTATAGGCAA 57.482 32.000 23.07 9.39 46.34 4.52
851 1126 7.592938 TGCCGATTGATTAATTTATAGGCAAG 58.407 34.615 23.07 1.90 46.34 4.01
852 1127 7.230510 TGCCGATTGATTAATTTATAGGCAAGT 59.769 33.333 23.07 2.46 46.34 3.16
853 1128 8.082242 GCCGATTGATTAATTTATAGGCAAGTT 58.918 33.333 20.20 0.00 40.43 2.66
854 1129 9.965824 CCGATTGATTAATTTATAGGCAAGTTT 57.034 29.630 0.00 0.00 0.00 2.66
863 1138 3.421567 AGGCAAGTTTGACTGGACC 57.578 52.632 0.00 0.00 46.96 4.46
864 1139 0.535102 AGGCAAGTTTGACTGGACCG 60.535 55.000 0.00 0.00 46.96 4.79
865 1140 1.515521 GGCAAGTTTGACTGGACCGG 61.516 60.000 0.00 0.00 31.99 5.28
866 1141 0.534203 GCAAGTTTGACTGGACCGGA 60.534 55.000 9.46 0.00 0.00 5.14
867 1142 1.961793 CAAGTTTGACTGGACCGGAA 58.038 50.000 9.46 0.00 0.00 4.30
868 1143 2.294074 CAAGTTTGACTGGACCGGAAA 58.706 47.619 9.46 0.00 0.00 3.13
869 1144 2.685897 CAAGTTTGACTGGACCGGAAAA 59.314 45.455 9.46 4.65 0.00 2.29
870 1145 2.572290 AGTTTGACTGGACCGGAAAAG 58.428 47.619 9.46 4.25 0.00 2.27
871 1146 2.171870 AGTTTGACTGGACCGGAAAAGA 59.828 45.455 9.46 0.00 0.00 2.52
872 1147 2.543777 TTGACTGGACCGGAAAAGAG 57.456 50.000 9.46 0.00 0.00 2.85
873 1148 0.034896 TGACTGGACCGGAAAAGAGC 59.965 55.000 9.46 1.05 0.00 4.09
874 1149 0.321996 GACTGGACCGGAAAAGAGCT 59.678 55.000 9.46 0.00 0.00 4.09
875 1150 0.035458 ACTGGACCGGAAAAGAGCTG 59.965 55.000 9.46 0.00 0.00 4.24
876 1151 0.035458 CTGGACCGGAAAAGAGCTGT 59.965 55.000 9.46 0.00 0.00 4.40
877 1152 0.034896 TGGACCGGAAAAGAGCTGTC 59.965 55.000 9.46 0.00 0.00 3.51
878 1153 0.673956 GGACCGGAAAAGAGCTGTCC 60.674 60.000 9.46 0.00 35.91 4.02
882 1157 3.324207 GGAAAAGAGCTGTCCGGTT 57.676 52.632 0.00 0.00 0.00 4.44
883 1158 0.875059 GGAAAAGAGCTGTCCGGTTG 59.125 55.000 0.00 0.00 0.00 3.77
884 1159 0.875059 GAAAAGAGCTGTCCGGTTGG 59.125 55.000 0.00 0.00 0.00 3.77
885 1160 0.472471 AAAAGAGCTGTCCGGTTGGA 59.528 50.000 0.00 0.00 43.88 3.53
894 1169 3.642938 TCCGGTTGGACTTGGAATG 57.357 52.632 0.00 0.00 40.17 2.67
895 1170 0.768622 TCCGGTTGGACTTGGAATGT 59.231 50.000 0.00 0.00 40.17 2.71
896 1171 1.165270 CCGGTTGGACTTGGAATGTC 58.835 55.000 0.00 0.00 40.02 3.06
1462 1737 4.003648 ACGTCTCCTCTGCTTTTATTTGG 58.996 43.478 0.00 0.00 0.00 3.28
1526 1801 1.639298 GCTCGATTTGCGGCTGTCTT 61.639 55.000 0.00 0.00 41.33 3.01
1627 1902 0.103937 TGCATCGATCGCCACACATA 59.896 50.000 11.09 0.00 0.00 2.29
1634 1909 4.733850 TCGATCGCCACACATATATTCTC 58.266 43.478 11.09 0.00 0.00 2.87
1694 4531 1.304217 TCGCCCTCGAACTCTTCCT 60.304 57.895 0.00 0.00 42.44 3.36
1732 4569 2.166664 CCCTCAACTCTAAACCGGAGAG 59.833 54.545 9.46 13.27 45.08 3.20
1758 4595 3.007635 GGTCCCTCAACTATCAAAACCG 58.992 50.000 0.00 0.00 0.00 4.44
1759 7158 3.307199 GGTCCCTCAACTATCAAAACCGA 60.307 47.826 0.00 0.00 0.00 4.69
1801 7200 1.003476 TTCGGGCGGTTTTAGTCCC 60.003 57.895 0.00 0.00 35.42 4.46
1882 7284 3.935203 CAGCATCGAAGATACTTTGGTGT 59.065 43.478 11.89 0.06 45.12 4.16
1926 7328 4.517075 TGTGGTGTTTTGATATTCGAGCAA 59.483 37.500 0.00 0.00 0.00 3.91
1977 7379 7.899178 ATGTACGTCAGTGAACAATAATTCA 57.101 32.000 0.00 0.00 36.23 2.57
1979 7381 8.317891 TGTACGTCAGTGAACAATAATTCAAT 57.682 30.769 0.00 0.00 40.22 2.57
2058 7466 1.585668 CAACGTGCGTGCAAATTTTCA 59.414 42.857 0.00 0.00 0.00 2.69
2183 7599 4.993584 GCTCCTCGTATGTCATTTGATCAT 59.006 41.667 0.00 0.00 0.00 2.45
2184 7600 5.107182 GCTCCTCGTATGTCATTTGATCATG 60.107 44.000 0.00 0.00 0.00 3.07
2239 7655 7.574217 GCATCTTTGATGCCAAAATGTTTCATT 60.574 33.333 18.54 0.00 41.28 2.57
2460 10452 5.547465 TGTTCACCGATTTACTGTTCATCT 58.453 37.500 0.00 0.00 0.00 2.90
2462 10454 5.400066 TCACCGATTTACTGTTCATCTCA 57.600 39.130 0.00 0.00 0.00 3.27
2479 10471 0.245539 TCAGACTAAAACCGCCCGAG 59.754 55.000 0.00 0.00 0.00 4.63
2725 15865 0.818040 GGCTCCGGTGAAACACTTGT 60.818 55.000 7.92 0.00 39.98 3.16
2732 15872 2.285977 GGTGAAACACTTGTCCGTTCT 58.714 47.619 0.00 0.00 39.98 3.01
2874 16026 0.474854 TCAAGCCCTGGGGTGAGTTA 60.475 55.000 19.88 0.00 37.65 2.24
3033 16191 7.400339 TGGGCTATTATTACCAACAAAAATCCA 59.600 33.333 0.00 0.00 0.00 3.41
3299 16476 6.036408 TCAGACTTTCAGCACAATATTGATCG 59.964 38.462 22.16 10.52 0.00 3.69
3442 16628 4.455877 AGATCAACAAACTCGGTGGAATTC 59.544 41.667 0.00 0.00 0.00 2.17
3602 16788 9.669353 CCTGAGAATTTTATGAATCCGTAATTG 57.331 33.333 0.00 0.00 0.00 2.32
3670 16856 7.672983 TTTATGAATCTCTCTGGTGTGTTTC 57.327 36.000 0.00 0.00 0.00 2.78
3731 16920 8.467598 TGGACTGATATAGAAGTAGAACACAAC 58.532 37.037 0.00 0.00 0.00 3.32
3755 16944 8.547967 ACCATATATTAAAAGCTACCGTCATG 57.452 34.615 0.00 0.00 0.00 3.07
3816 17005 6.144845 TGGGGTACAACTCTTACTAGTACT 57.855 41.667 0.91 0.00 36.28 2.73
3847 17039 8.311650 AGTGTAACATGAAATTCAGTAGTGAC 57.688 34.615 0.00 4.53 41.43 3.67
4093 17285 0.031716 CATCTCTGGTGGAGGGAGGA 60.032 60.000 0.00 0.00 34.65 3.71
4301 17533 0.827368 CTCCCACCTCTGCTTACCTC 59.173 60.000 0.00 0.00 0.00 3.85
4304 17536 0.984230 CCACCTCTGCTTACCTCCAA 59.016 55.000 0.00 0.00 0.00 3.53
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 2.692741 CTTCTCCTCCCCCACCCC 60.693 72.222 0.00 0.00 0.00 4.95
6 7 2.692741 CCTTCTCCTCCCCCACCC 60.693 72.222 0.00 0.00 0.00 4.61
7 8 2.692741 CCCTTCTCCTCCCCCACC 60.693 72.222 0.00 0.00 0.00 4.61
8 9 2.692741 CCCCTTCTCCTCCCCCAC 60.693 72.222 0.00 0.00 0.00 4.61
9 10 2.506693 TTCCCCTTCTCCTCCCCCA 61.507 63.158 0.00 0.00 0.00 4.96
10 11 2.001838 GTTCCCCTTCTCCTCCCCC 61.002 68.421 0.00 0.00 0.00 5.40
11 12 2.368011 CGTTCCCCTTCTCCTCCCC 61.368 68.421 0.00 0.00 0.00 4.81
12 13 3.032667 GCGTTCCCCTTCTCCTCCC 62.033 68.421 0.00 0.00 0.00 4.30
13 14 2.585153 GCGTTCCCCTTCTCCTCC 59.415 66.667 0.00 0.00 0.00 4.30
14 15 2.184579 CGCGTTCCCCTTCTCCTC 59.815 66.667 0.00 0.00 0.00 3.71
15 16 2.283676 TCGCGTTCCCCTTCTCCT 60.284 61.111 5.77 0.00 0.00 3.69
16 17 2.184579 CTCGCGTTCCCCTTCTCC 59.815 66.667 5.77 0.00 0.00 3.71
17 18 2.184579 CCTCGCGTTCCCCTTCTC 59.815 66.667 5.77 0.00 0.00 2.87
18 19 3.391382 CCCTCGCGTTCCCCTTCT 61.391 66.667 5.77 0.00 0.00 2.85
19 20 4.468689 CCCCTCGCGTTCCCCTTC 62.469 72.222 5.77 0.00 0.00 3.46
23 24 4.468689 CTTCCCCCTCGCGTTCCC 62.469 72.222 5.77 0.00 0.00 3.97
24 25 4.468689 CCTTCCCCCTCGCGTTCC 62.469 72.222 5.77 0.00 0.00 3.62
25 26 4.468689 CCCTTCCCCCTCGCGTTC 62.469 72.222 5.77 0.00 0.00 3.95
62 63 4.832608 CTAGGGTTCCACCGCGGC 62.833 72.222 28.58 8.35 39.83 6.53
63 64 4.157120 CCTAGGGTTCCACCGCGG 62.157 72.222 26.86 26.86 39.83 6.46
64 65 3.072468 TCCTAGGGTTCCACCGCG 61.072 66.667 9.46 0.00 39.83 6.46
65 66 2.901042 CTCCTAGGGTTCCACCGC 59.099 66.667 9.46 0.00 39.83 5.68
66 67 2.901042 GCTCCTAGGGTTCCACCG 59.099 66.667 9.46 0.00 39.83 4.94
67 68 2.732619 CCGCTCCTAGGGTTCCACC 61.733 68.421 9.46 0.00 37.60 4.61
68 69 2.732619 CCCGCTCCTAGGGTTCCAC 61.733 68.421 9.46 0.00 43.89 4.02
69 70 2.365105 CCCGCTCCTAGGGTTCCA 60.365 66.667 9.46 0.00 43.89 3.53
100 101 3.735037 GATCCAGCCCGTTCCCGAC 62.735 68.421 0.00 0.00 35.63 4.79
101 102 3.467226 GATCCAGCCCGTTCCCGA 61.467 66.667 0.00 0.00 35.63 5.14
102 103 4.547367 GGATCCAGCCCGTTCCCG 62.547 72.222 6.95 0.00 0.00 5.14
103 104 3.407967 TGGATCCAGCCCGTTCCC 61.408 66.667 11.44 0.00 0.00 3.97
104 105 2.124695 GTGGATCCAGCCCGTTCC 60.125 66.667 16.81 0.00 0.00 3.62
105 106 1.745489 GTGTGGATCCAGCCCGTTC 60.745 63.158 16.81 1.46 0.00 3.95
106 107 1.852157 ATGTGTGGATCCAGCCCGTT 61.852 55.000 16.81 0.00 0.00 4.44
107 108 0.980754 TATGTGTGGATCCAGCCCGT 60.981 55.000 16.81 9.75 0.00 5.28
108 109 0.397941 ATATGTGTGGATCCAGCCCG 59.602 55.000 16.81 0.00 0.00 6.13
109 110 1.901591 CATATGTGTGGATCCAGCCC 58.098 55.000 16.81 3.99 0.00 5.19
110 111 1.242076 GCATATGTGTGGATCCAGCC 58.758 55.000 16.81 9.25 0.00 4.85
111 112 1.971481 TGCATATGTGTGGATCCAGC 58.029 50.000 16.81 13.81 0.00 4.85
112 113 5.819379 GGTATATGCATATGTGTGGATCCAG 59.181 44.000 26.21 2.15 32.18 3.86
113 114 5.250313 TGGTATATGCATATGTGTGGATCCA 59.750 40.000 26.21 11.44 32.18 3.41
114 115 5.744171 TGGTATATGCATATGTGTGGATCC 58.256 41.667 26.21 4.20 32.18 3.36
115 116 7.391554 ACTTTGGTATATGCATATGTGTGGATC 59.608 37.037 26.21 8.57 32.18 3.36
116 117 7.233632 ACTTTGGTATATGCATATGTGTGGAT 58.766 34.615 26.21 4.62 34.39 3.41
117 118 6.600388 ACTTTGGTATATGCATATGTGTGGA 58.400 36.000 26.21 5.07 0.00 4.02
118 119 6.882610 ACTTTGGTATATGCATATGTGTGG 57.117 37.500 26.21 14.69 0.00 4.17
200 201 1.372997 CGTCACTGCTACCGTTGCT 60.373 57.895 6.52 0.00 0.00 3.91
202 203 1.344942 GCTCGTCACTGCTACCGTTG 61.345 60.000 0.00 0.00 0.00 4.10
206 207 0.243907 TCAAGCTCGTCACTGCTACC 59.756 55.000 0.00 0.00 38.75 3.18
217 218 1.298157 TTTGCACCCGATCAAGCTCG 61.298 55.000 0.00 0.00 38.37 5.03
278 279 5.117745 CACTCAGTCTCACGTTTGAGTTATG 59.882 44.000 11.47 6.28 45.80 1.90
292 554 0.247894 CTAGCGCGACACTCAGTCTC 60.248 60.000 12.10 0.00 45.32 3.36
295 557 1.502640 GACTAGCGCGACACTCAGT 59.497 57.895 12.10 1.97 0.00 3.41
296 558 1.581402 CGACTAGCGCGACACTCAG 60.581 63.158 12.10 0.00 0.00 3.35
301 563 1.330306 GTTTAACGACTAGCGCGACA 58.670 50.000 12.10 0.00 46.04 4.35
312 574 3.460278 CGTCGGCGCGTTTAACGA 61.460 61.111 22.15 7.91 46.05 3.85
334 596 1.135689 GCTACGTTTCTTGCCACATGG 60.136 52.381 0.00 0.00 38.53 3.66
335 597 1.135689 GGCTACGTTTCTTGCCACATG 60.136 52.381 0.00 0.00 44.34 3.21
336 598 1.165270 GGCTACGTTTCTTGCCACAT 58.835 50.000 0.00 0.00 44.34 3.21
337 599 1.225376 CGGCTACGTTTCTTGCCACA 61.225 55.000 0.00 0.00 45.13 4.17
338 600 0.947180 TCGGCTACGTTTCTTGCCAC 60.947 55.000 0.00 0.00 45.13 5.01
339 601 0.669318 CTCGGCTACGTTTCTTGCCA 60.669 55.000 0.00 0.00 45.13 4.92
340 602 0.389426 TCTCGGCTACGTTTCTTGCC 60.389 55.000 0.00 0.00 41.85 4.52
372 634 4.565166 GGCATCAAATTTAAAAGTACCCGC 59.435 41.667 0.00 0.00 0.00 6.13
390 652 5.105063 GGCTTACTCAAAAATCTTGGCATC 58.895 41.667 0.00 0.00 0.00 3.91
391 653 4.527816 TGGCTTACTCAAAAATCTTGGCAT 59.472 37.500 0.00 0.00 0.00 4.40
400 662 5.669164 AAACACCTTGGCTTACTCAAAAA 57.331 34.783 0.00 0.00 0.00 1.94
406 668 4.514066 CGTAGAAAAACACCTTGGCTTACT 59.486 41.667 0.00 0.00 0.00 2.24
436 698 2.521105 AAAGTGAACTCGGCTTACGT 57.479 45.000 0.00 0.00 44.69 3.57
437 699 2.542595 ACAAAAGTGAACTCGGCTTACG 59.457 45.455 0.00 0.00 46.11 3.18
481 755 2.602878 TCGAAATGGTGTAAGTCGAGC 58.397 47.619 0.00 0.00 35.92 5.03
505 779 5.583854 TGTTAGCCAAGTGTAAAAACACGTA 59.416 36.000 3.22 0.00 44.71 3.57
507 781 4.911053 TGTTAGCCAAGTGTAAAAACACG 58.089 39.130 3.22 0.00 44.71 4.49
572 846 7.604927 TGCGTCTGTATCTAATAAAACAAAGGT 59.395 33.333 0.00 0.00 0.00 3.50
573 847 7.970384 TGCGTCTGTATCTAATAAAACAAAGG 58.030 34.615 0.00 0.00 0.00 3.11
574 848 8.116753 CCTGCGTCTGTATCTAATAAAACAAAG 58.883 37.037 0.00 0.00 0.00 2.77
587 861 1.495878 CATGAGCCTGCGTCTGTATC 58.504 55.000 0.00 0.00 0.00 2.24
591 866 0.531311 TATGCATGAGCCTGCGTCTG 60.531 55.000 10.16 0.00 45.30 3.51
596 871 3.754850 TGAATGTATATGCATGAGCCTGC 59.245 43.478 10.16 0.00 42.62 4.85
597 872 5.001874 AGTGAATGTATATGCATGAGCCTG 58.998 41.667 10.16 0.00 41.13 4.85
635 910 9.640963 GTTCATGAGATACAGTTGTTAAGTACT 57.359 33.333 0.00 0.00 0.00 2.73
636 911 9.640963 AGTTCATGAGATACAGTTGTTAAGTAC 57.359 33.333 0.00 0.00 0.00 2.73
638 913 9.561069 AAAGTTCATGAGATACAGTTGTTAAGT 57.439 29.630 0.00 0.00 0.00 2.24
640 915 9.778741 AGAAAGTTCATGAGATACAGTTGTTAA 57.221 29.630 0.00 0.00 0.00 2.01
641 916 9.208022 CAGAAAGTTCATGAGATACAGTTGTTA 57.792 33.333 0.00 0.00 0.00 2.41
642 917 7.716998 ACAGAAAGTTCATGAGATACAGTTGTT 59.283 33.333 0.00 0.00 0.00 2.83
643 918 7.220030 ACAGAAAGTTCATGAGATACAGTTGT 58.780 34.615 0.00 0.00 0.00 3.32
644 919 7.664082 ACAGAAAGTTCATGAGATACAGTTG 57.336 36.000 0.00 0.00 0.00 3.16
645 920 7.173907 CCAACAGAAAGTTCATGAGATACAGTT 59.826 37.037 0.00 0.00 38.74 3.16
646 921 6.652481 CCAACAGAAAGTTCATGAGATACAGT 59.348 38.462 0.00 0.00 38.74 3.55
647 922 6.875726 TCCAACAGAAAGTTCATGAGATACAG 59.124 38.462 0.00 0.00 38.74 2.74
648 923 6.768483 TCCAACAGAAAGTTCATGAGATACA 58.232 36.000 0.00 0.00 38.74 2.29
649 924 7.856145 ATCCAACAGAAAGTTCATGAGATAC 57.144 36.000 0.00 0.00 38.74 2.24
651 926 9.118300 GATTATCCAACAGAAAGTTCATGAGAT 57.882 33.333 0.00 0.00 38.74 2.75
652 927 7.554118 GGATTATCCAACAGAAAGTTCATGAGA 59.446 37.037 6.34 0.00 38.74 3.27
653 928 7.337689 TGGATTATCCAACAGAAAGTTCATGAG 59.662 37.037 12.08 0.00 45.00 2.90
654 929 7.174413 TGGATTATCCAACAGAAAGTTCATGA 58.826 34.615 12.08 0.00 45.00 3.07
655 930 7.395190 TGGATTATCCAACAGAAAGTTCATG 57.605 36.000 12.08 0.00 45.00 3.07
669 944 4.525874 TGCAACACATGTTTGGATTATCCA 59.474 37.500 10.29 10.29 46.61 3.41
670 945 5.070770 TGCAACACATGTTTGGATTATCC 57.929 39.130 16.99 3.91 35.83 2.59
671 946 5.577945 CCTTGCAACACATGTTTGGATTATC 59.422 40.000 16.99 0.00 35.83 1.75
672 947 5.245751 TCCTTGCAACACATGTTTGGATTAT 59.754 36.000 16.99 0.00 35.83 1.28
673 948 4.586421 TCCTTGCAACACATGTTTGGATTA 59.414 37.500 16.99 5.35 35.83 1.75
674 949 3.387374 TCCTTGCAACACATGTTTGGATT 59.613 39.130 16.99 0.00 35.83 3.01
675 950 2.964464 TCCTTGCAACACATGTTTGGAT 59.036 40.909 16.99 0.00 35.83 3.41
676 951 2.382882 TCCTTGCAACACATGTTTGGA 58.617 42.857 16.99 13.52 35.83 3.53
677 952 2.886862 TCCTTGCAACACATGTTTGG 57.113 45.000 16.99 3.01 35.83 3.28
678 953 4.925054 CCTAATCCTTGCAACACATGTTTG 59.075 41.667 0.00 6.03 35.83 2.93
679 954 4.588528 ACCTAATCCTTGCAACACATGTTT 59.411 37.500 0.00 0.00 35.83 2.83
680 955 4.151883 ACCTAATCCTTGCAACACATGTT 58.848 39.130 0.00 0.00 39.12 2.71
681 956 3.766545 ACCTAATCCTTGCAACACATGT 58.233 40.909 0.00 0.00 0.00 3.21
682 957 5.415701 ACTTACCTAATCCTTGCAACACATG 59.584 40.000 0.00 0.00 0.00 3.21
683 958 5.570320 ACTTACCTAATCCTTGCAACACAT 58.430 37.500 0.00 0.00 0.00 3.21
684 959 4.980573 ACTTACCTAATCCTTGCAACACA 58.019 39.130 0.00 0.00 0.00 3.72
685 960 5.959618 AACTTACCTAATCCTTGCAACAC 57.040 39.130 0.00 0.00 0.00 3.32
686 961 6.065374 TCAAACTTACCTAATCCTTGCAACA 58.935 36.000 0.00 0.00 0.00 3.33
687 962 6.206829 ACTCAAACTTACCTAATCCTTGCAAC 59.793 38.462 0.00 0.00 0.00 4.17
688 963 6.303839 ACTCAAACTTACCTAATCCTTGCAA 58.696 36.000 0.00 0.00 0.00 4.08
689 964 5.876357 ACTCAAACTTACCTAATCCTTGCA 58.124 37.500 0.00 0.00 0.00 4.08
690 965 6.819397 AACTCAAACTTACCTAATCCTTGC 57.181 37.500 0.00 0.00 0.00 4.01
691 966 9.503399 AACTAACTCAAACTTACCTAATCCTTG 57.497 33.333 0.00 0.00 0.00 3.61
693 968 9.722184 GAAACTAACTCAAACTTACCTAATCCT 57.278 33.333 0.00 0.00 0.00 3.24
694 969 8.944029 GGAAACTAACTCAAACTTACCTAATCC 58.056 37.037 0.00 0.00 0.00 3.01
695 970 9.722184 AGGAAACTAACTCAAACTTACCTAATC 57.278 33.333 0.00 0.00 40.61 1.75
698 973 9.372189 ACTAGGAAACTAACTCAAACTTACCTA 57.628 33.333 0.00 0.00 43.83 3.08
699 974 8.260099 ACTAGGAAACTAACTCAAACTTACCT 57.740 34.615 0.00 0.00 43.83 3.08
700 975 7.601886 GGACTAGGAAACTAACTCAAACTTACC 59.398 40.741 0.00 0.00 43.83 2.85
701 976 8.146412 TGGACTAGGAAACTAACTCAAACTTAC 58.854 37.037 0.00 0.00 43.83 2.34
702 977 8.253867 TGGACTAGGAAACTAACTCAAACTTA 57.746 34.615 0.00 0.00 43.83 2.24
703 978 7.133133 TGGACTAGGAAACTAACTCAAACTT 57.867 36.000 0.00 0.00 43.83 2.66
704 979 6.742559 TGGACTAGGAAACTAACTCAAACT 57.257 37.500 0.00 0.00 43.83 2.66
705 980 6.990939 AGTTGGACTAGGAAACTAACTCAAAC 59.009 38.462 5.46 0.00 43.83 2.93
706 981 6.990349 CAGTTGGACTAGGAAACTAACTCAAA 59.010 38.462 6.64 0.00 43.83 2.69
707 982 6.099269 ACAGTTGGACTAGGAAACTAACTCAA 59.901 38.462 6.64 0.00 43.83 3.02
708 983 5.601313 ACAGTTGGACTAGGAAACTAACTCA 59.399 40.000 6.64 0.00 43.83 3.41
709 984 6.099159 ACAGTTGGACTAGGAAACTAACTC 57.901 41.667 6.64 0.00 43.83 3.01
710 985 6.210984 CCTACAGTTGGACTAGGAAACTAACT 59.789 42.308 0.00 5.84 43.83 2.24
711 986 6.396450 CCTACAGTTGGACTAGGAAACTAAC 58.604 44.000 0.00 4.06 43.83 2.34
712 987 5.482878 CCCTACAGTTGGACTAGGAAACTAA 59.517 44.000 2.05 0.25 43.83 2.24
713 988 5.021458 CCCTACAGTTGGACTAGGAAACTA 58.979 45.833 2.05 0.00 43.67 2.24
715 990 3.055312 CCCCTACAGTTGGACTAGGAAAC 60.055 52.174 2.05 0.00 27.53 2.78
716 991 3.178865 CCCCTACAGTTGGACTAGGAAA 58.821 50.000 2.05 0.00 27.53 3.13
717 992 2.113052 ACCCCTACAGTTGGACTAGGAA 59.887 50.000 2.05 0.00 27.53 3.36
718 993 1.720533 ACCCCTACAGTTGGACTAGGA 59.279 52.381 2.05 0.00 27.53 2.94
719 994 1.831736 CACCCCTACAGTTGGACTAGG 59.168 57.143 2.05 0.00 0.00 3.02
720 995 1.831736 CCACCCCTACAGTTGGACTAG 59.168 57.143 2.05 0.00 0.00 2.57
721 996 1.553884 CCCACCCCTACAGTTGGACTA 60.554 57.143 2.05 0.00 0.00 2.59
722 997 0.840722 CCCACCCCTACAGTTGGACT 60.841 60.000 2.05 0.00 0.00 3.85
723 998 0.838987 TCCCACCCCTACAGTTGGAC 60.839 60.000 2.05 0.00 0.00 4.02
724 999 0.104356 TTCCCACCCCTACAGTTGGA 60.104 55.000 2.05 0.00 0.00 3.53
725 1000 0.999712 ATTCCCACCCCTACAGTTGG 59.000 55.000 0.00 0.00 0.00 3.77
726 1001 2.844348 AGTATTCCCACCCCTACAGTTG 59.156 50.000 0.00 0.00 0.00 3.16
727 1002 3.216230 AGTATTCCCACCCCTACAGTT 57.784 47.619 0.00 0.00 0.00 3.16
728 1003 2.963654 AGTATTCCCACCCCTACAGT 57.036 50.000 0.00 0.00 0.00 3.55
729 1004 3.896272 GAGTAGTATTCCCACCCCTACAG 59.104 52.174 0.00 0.00 32.36 2.74
730 1005 3.374540 GGAGTAGTATTCCCACCCCTACA 60.375 52.174 0.08 0.00 32.36 2.74
731 1006 3.237746 GGAGTAGTATTCCCACCCCTAC 58.762 54.545 0.08 0.00 0.00 3.18
732 1007 2.867099 TGGAGTAGTATTCCCACCCCTA 59.133 50.000 9.09 0.00 33.62 3.53
733 1008 1.654997 TGGAGTAGTATTCCCACCCCT 59.345 52.381 9.09 0.00 33.62 4.79
734 1009 2.047830 CTGGAGTAGTATTCCCACCCC 58.952 57.143 9.09 0.00 33.62 4.95
735 1010 2.047830 CCTGGAGTAGTATTCCCACCC 58.952 57.143 9.09 0.00 33.62 4.61
736 1011 2.760581 ACCTGGAGTAGTATTCCCACC 58.239 52.381 9.09 0.00 33.62 4.61
760 1035 4.235360 ACTATGACACGTCTAAGTGCAAC 58.765 43.478 0.00 0.00 45.45 4.17
761 1036 4.514781 ACTATGACACGTCTAAGTGCAA 57.485 40.909 0.00 0.00 45.45 4.08
762 1037 4.698780 ACTACTATGACACGTCTAAGTGCA 59.301 41.667 12.41 0.00 45.45 4.57
763 1038 5.232610 ACTACTATGACACGTCTAAGTGC 57.767 43.478 12.41 0.00 45.45 4.40
764 1039 8.213153 CGTATACTACTATGACACGTCTAAGTG 58.787 40.741 12.41 0.00 46.83 3.16
765 1040 7.923344 ACGTATACTACTATGACACGTCTAAGT 59.077 37.037 0.56 9.09 36.51 2.24
766 1041 8.291888 ACGTATACTACTATGACACGTCTAAG 57.708 38.462 0.56 0.00 36.51 2.18
767 1042 9.914131 ATACGTATACTACTATGACACGTCTAA 57.086 33.333 6.21 0.00 41.01 2.10
768 1043 9.346725 CATACGTATACTACTATGACACGTCTA 57.653 37.037 7.96 0.00 41.01 2.59
769 1044 8.084684 TCATACGTATACTACTATGACACGTCT 58.915 37.037 7.96 0.00 41.01 4.18
770 1045 8.232497 TCATACGTATACTACTATGACACGTC 57.768 38.462 7.96 0.00 41.01 4.34
771 1046 7.869937 ACTCATACGTATACTACTATGACACGT 59.130 37.037 7.96 0.00 42.94 4.49
772 1047 8.237282 ACTCATACGTATACTACTATGACACG 57.763 38.462 7.96 0.00 31.65 4.49
773 1048 9.201127 TGACTCATACGTATACTACTATGACAC 57.799 37.037 7.96 0.00 31.65 3.67
774 1049 9.420551 CTGACTCATACGTATACTACTATGACA 57.579 37.037 7.96 0.00 31.65 3.58
775 1050 9.636879 TCTGACTCATACGTATACTACTATGAC 57.363 37.037 7.96 0.00 31.65 3.06
780 1055 9.656040 CCTAATCTGACTCATACGTATACTACT 57.344 37.037 7.96 0.00 0.00 2.57
781 1056 9.434420 ACCTAATCTGACTCATACGTATACTAC 57.566 37.037 7.96 1.87 0.00 2.73
782 1057 9.650539 GACCTAATCTGACTCATACGTATACTA 57.349 37.037 7.96 0.00 0.00 1.82
783 1058 8.377034 AGACCTAATCTGACTCATACGTATACT 58.623 37.037 7.96 0.00 35.81 2.12
784 1059 8.550710 AGACCTAATCTGACTCATACGTATAC 57.449 38.462 7.96 1.53 35.81 1.47
786 1061 9.221933 CTTAGACCTAATCTGACTCATACGTAT 57.778 37.037 1.14 1.14 38.49 3.06
787 1062 8.209584 ACTTAGACCTAATCTGACTCATACGTA 58.790 37.037 0.00 0.00 38.49 3.57
788 1063 7.055378 ACTTAGACCTAATCTGACTCATACGT 58.945 38.462 0.00 0.00 38.49 3.57
789 1064 7.499321 ACTTAGACCTAATCTGACTCATACG 57.501 40.000 0.00 0.00 38.49 3.06
790 1065 8.138712 CCAACTTAGACCTAATCTGACTCATAC 58.861 40.741 0.00 0.00 38.49 2.39
791 1066 7.287927 CCCAACTTAGACCTAATCTGACTCATA 59.712 40.741 0.00 0.00 38.49 2.15
792 1067 6.098982 CCCAACTTAGACCTAATCTGACTCAT 59.901 42.308 0.00 0.00 38.49 2.90
793 1068 5.422331 CCCAACTTAGACCTAATCTGACTCA 59.578 44.000 0.00 0.00 38.49 3.41
794 1069 5.657302 TCCCAACTTAGACCTAATCTGACTC 59.343 44.000 0.00 0.00 38.49 3.36
795 1070 5.590818 TCCCAACTTAGACCTAATCTGACT 58.409 41.667 0.00 0.00 38.49 3.41
796 1071 5.934402 TCCCAACTTAGACCTAATCTGAC 57.066 43.478 0.00 0.00 38.49 3.51
797 1072 6.202331 TGATCCCAACTTAGACCTAATCTGA 58.798 40.000 0.00 0.00 38.49 3.27
798 1073 6.485830 TGATCCCAACTTAGACCTAATCTG 57.514 41.667 0.00 0.00 38.49 2.90
799 1074 5.071115 GCTGATCCCAACTTAGACCTAATCT 59.929 44.000 0.00 0.00 41.95 2.40
800 1075 5.301555 GCTGATCCCAACTTAGACCTAATC 58.698 45.833 0.00 0.00 0.00 1.75
801 1076 4.202264 CGCTGATCCCAACTTAGACCTAAT 60.202 45.833 0.00 0.00 0.00 1.73
802 1077 3.132289 CGCTGATCCCAACTTAGACCTAA 59.868 47.826 0.00 0.00 0.00 2.69
803 1078 2.693591 CGCTGATCCCAACTTAGACCTA 59.306 50.000 0.00 0.00 0.00 3.08
804 1079 1.482593 CGCTGATCCCAACTTAGACCT 59.517 52.381 0.00 0.00 0.00 3.85
805 1080 1.207329 ACGCTGATCCCAACTTAGACC 59.793 52.381 0.00 0.00 0.00 3.85
806 1081 2.673368 CAACGCTGATCCCAACTTAGAC 59.327 50.000 0.00 0.00 0.00 2.59
807 1082 2.935238 GCAACGCTGATCCCAACTTAGA 60.935 50.000 0.00 0.00 0.00 2.10
808 1083 1.398390 GCAACGCTGATCCCAACTTAG 59.602 52.381 0.00 0.00 0.00 2.18
809 1084 1.448985 GCAACGCTGATCCCAACTTA 58.551 50.000 0.00 0.00 0.00 2.24
810 1085 1.244019 GGCAACGCTGATCCCAACTT 61.244 55.000 0.00 0.00 0.00 2.66
811 1086 1.675641 GGCAACGCTGATCCCAACT 60.676 57.895 0.00 0.00 0.00 3.16
812 1087 2.877691 GGCAACGCTGATCCCAAC 59.122 61.111 0.00 0.00 0.00 3.77
824 1099 7.367285 TGCCTATAAATTAATCAATCGGCAAC 58.633 34.615 18.39 0.87 40.46 4.17
825 1100 7.517614 TGCCTATAAATTAATCAATCGGCAA 57.482 32.000 18.39 8.43 40.46 4.52
826 1101 7.230510 ACTTGCCTATAAATTAATCAATCGGCA 59.769 33.333 17.45 17.45 41.54 5.69
827 1102 7.593825 ACTTGCCTATAAATTAATCAATCGGC 58.406 34.615 14.12 14.12 0.00 5.54
828 1103 9.965824 AAACTTGCCTATAAATTAATCAATCGG 57.034 29.630 0.00 0.00 0.00 4.18
834 1109 9.736023 CCAGTCAAACTTGCCTATAAATTAATC 57.264 33.333 0.00 0.00 0.00 1.75
835 1110 9.474313 TCCAGTCAAACTTGCCTATAAATTAAT 57.526 29.630 0.00 0.00 0.00 1.40
836 1111 8.736244 GTCCAGTCAAACTTGCCTATAAATTAA 58.264 33.333 0.00 0.00 0.00 1.40
837 1112 7.338449 GGTCCAGTCAAACTTGCCTATAAATTA 59.662 37.037 0.00 0.00 0.00 1.40
838 1113 6.152831 GGTCCAGTCAAACTTGCCTATAAATT 59.847 38.462 0.00 0.00 0.00 1.82
839 1114 5.652452 GGTCCAGTCAAACTTGCCTATAAAT 59.348 40.000 0.00 0.00 0.00 1.40
840 1115 5.007682 GGTCCAGTCAAACTTGCCTATAAA 58.992 41.667 0.00 0.00 0.00 1.40
841 1116 4.585879 GGTCCAGTCAAACTTGCCTATAA 58.414 43.478 0.00 0.00 0.00 0.98
842 1117 3.369052 CGGTCCAGTCAAACTTGCCTATA 60.369 47.826 0.00 0.00 0.00 1.31
843 1118 2.615493 CGGTCCAGTCAAACTTGCCTAT 60.615 50.000 0.00 0.00 0.00 2.57
844 1119 1.270625 CGGTCCAGTCAAACTTGCCTA 60.271 52.381 0.00 0.00 0.00 3.93
845 1120 0.535102 CGGTCCAGTCAAACTTGCCT 60.535 55.000 0.00 0.00 0.00 4.75
846 1121 1.515521 CCGGTCCAGTCAAACTTGCC 61.516 60.000 0.00 0.00 0.00 4.52
847 1122 0.534203 TCCGGTCCAGTCAAACTTGC 60.534 55.000 0.00 0.00 0.00 4.01
848 1123 1.961793 TTCCGGTCCAGTCAAACTTG 58.038 50.000 0.00 0.00 0.00 3.16
849 1124 2.721425 TTTCCGGTCCAGTCAAACTT 57.279 45.000 0.00 0.00 0.00 2.66
850 1125 2.171870 TCTTTTCCGGTCCAGTCAAACT 59.828 45.455 0.00 0.00 0.00 2.66
851 1126 2.548480 CTCTTTTCCGGTCCAGTCAAAC 59.452 50.000 0.00 0.00 0.00 2.93
852 1127 2.846193 CTCTTTTCCGGTCCAGTCAAA 58.154 47.619 0.00 0.00 0.00 2.69
853 1128 1.542547 GCTCTTTTCCGGTCCAGTCAA 60.543 52.381 0.00 0.00 0.00 3.18
854 1129 0.034896 GCTCTTTTCCGGTCCAGTCA 59.965 55.000 0.00 0.00 0.00 3.41
855 1130 0.321996 AGCTCTTTTCCGGTCCAGTC 59.678 55.000 0.00 0.00 0.00 3.51
856 1131 0.035458 CAGCTCTTTTCCGGTCCAGT 59.965 55.000 0.00 0.00 0.00 4.00
857 1132 0.035458 ACAGCTCTTTTCCGGTCCAG 59.965 55.000 0.00 0.00 0.00 3.86
858 1133 0.034896 GACAGCTCTTTTCCGGTCCA 59.965 55.000 0.00 0.00 0.00 4.02
859 1134 0.673956 GGACAGCTCTTTTCCGGTCC 60.674 60.000 0.00 0.37 38.71 4.46
860 1135 2.842320 GGACAGCTCTTTTCCGGTC 58.158 57.895 0.00 0.00 0.00 4.79
864 1139 0.875059 CAACCGGACAGCTCTTTTCC 59.125 55.000 9.46 0.00 0.00 3.13
865 1140 0.875059 CCAACCGGACAGCTCTTTTC 59.125 55.000 9.46 0.00 0.00 2.29
866 1141 0.472471 TCCAACCGGACAGCTCTTTT 59.528 50.000 9.46 0.00 35.91 2.27
867 1142 2.142220 TCCAACCGGACAGCTCTTT 58.858 52.632 9.46 0.00 35.91 2.52
868 1143 3.885814 TCCAACCGGACAGCTCTT 58.114 55.556 9.46 0.00 35.91 2.85
876 1151 0.768622 ACATTCCAAGTCCAACCGGA 59.231 50.000 9.46 0.00 39.79 5.14
877 1152 1.165270 GACATTCCAAGTCCAACCGG 58.835 55.000 0.00 0.00 0.00 5.28
878 1153 1.535462 GTGACATTCCAAGTCCAACCG 59.465 52.381 0.00 0.00 35.15 4.44
879 1154 2.554032 CAGTGACATTCCAAGTCCAACC 59.446 50.000 0.00 0.00 35.15 3.77
880 1155 2.554032 CCAGTGACATTCCAAGTCCAAC 59.446 50.000 0.00 0.00 35.15 3.77
881 1156 2.441375 TCCAGTGACATTCCAAGTCCAA 59.559 45.455 0.00 0.00 35.15 3.53
882 1157 2.054021 TCCAGTGACATTCCAAGTCCA 58.946 47.619 0.00 0.00 35.15 4.02
883 1158 2.859165 TCCAGTGACATTCCAAGTCC 57.141 50.000 0.00 0.00 35.15 3.85
884 1159 4.616835 GCAATTCCAGTGACATTCCAAGTC 60.617 45.833 0.00 0.00 36.55 3.01
885 1160 3.256631 GCAATTCCAGTGACATTCCAAGT 59.743 43.478 0.00 0.00 0.00 3.16
886 1161 3.256383 TGCAATTCCAGTGACATTCCAAG 59.744 43.478 0.00 0.00 0.00 3.61
887 1162 3.229293 TGCAATTCCAGTGACATTCCAA 58.771 40.909 0.00 0.00 0.00 3.53
888 1163 2.874014 TGCAATTCCAGTGACATTCCA 58.126 42.857 0.00 0.00 0.00 3.53
889 1164 3.429822 CCATGCAATTCCAGTGACATTCC 60.430 47.826 0.00 0.00 0.00 3.01
890 1165 3.444742 TCCATGCAATTCCAGTGACATTC 59.555 43.478 0.00 0.00 0.00 2.67
891 1166 3.194116 GTCCATGCAATTCCAGTGACATT 59.806 43.478 0.00 0.00 0.00 2.71
892 1167 2.756760 GTCCATGCAATTCCAGTGACAT 59.243 45.455 0.00 0.00 0.00 3.06
893 1168 2.161855 GTCCATGCAATTCCAGTGACA 58.838 47.619 0.00 0.00 0.00 3.58
894 1169 2.421424 GAGTCCATGCAATTCCAGTGAC 59.579 50.000 0.00 0.00 0.00 3.67
895 1170 2.306805 AGAGTCCATGCAATTCCAGTGA 59.693 45.455 0.00 0.00 0.00 3.41
896 1171 2.422479 CAGAGTCCATGCAATTCCAGTG 59.578 50.000 0.00 0.00 0.00 3.66
952 1227 1.618343 TGATGCACGGAGTCTTCAAGA 59.382 47.619 0.00 0.00 41.61 3.02
955 1230 1.067565 GTCTGATGCACGGAGTCTTCA 60.068 52.381 0.00 0.00 41.61 3.02
1462 1737 3.096489 TGAAGTCATGCAAGGCAAAAC 57.904 42.857 0.00 0.00 43.62 2.43
1526 1801 1.866237 GACGCCGTGCTTTGATTCA 59.134 52.632 0.00 0.00 0.00 2.57
1659 1934 7.039923 TCGAGGGCGAAAAATATACTTATCTCT 60.040 37.037 0.00 0.00 44.78 3.10
1661 1936 6.989659 TCGAGGGCGAAAAATATACTTATCT 58.010 36.000 0.00 0.00 44.78 1.98
1694 4531 6.436532 AGTTGAGGGACGATTTCTAAACTCTA 59.563 38.462 0.00 0.00 0.00 2.43
1732 4569 6.213677 GTTTTGATAGTTGAGGGACCAAAAC 58.786 40.000 0.00 0.00 42.07 2.43
1737 4574 3.007635 CGGTTTTGATAGTTGAGGGACC 58.992 50.000 0.00 0.00 0.00 4.46
1758 4595 2.347755 GCACGAGGGACGAAAACTATTC 59.652 50.000 0.00 0.00 45.77 1.75
1759 7158 2.344025 GCACGAGGGACGAAAACTATT 58.656 47.619 0.00 0.00 45.77 1.73
1847 7249 5.582269 TCTTCGATGCTGTAAAATTCCAGAG 59.418 40.000 4.44 0.00 0.00 3.35
1852 7254 9.214953 CAAAGTATCTTCGATGCTGTAAAATTC 57.785 33.333 0.00 0.00 0.00 2.17
1860 7262 3.935203 ACACCAAAGTATCTTCGATGCTG 59.065 43.478 0.00 0.00 0.00 4.41
1953 7355 7.899178 TGAATTATTGTTCACTGACGTACAT 57.101 32.000 0.00 0.00 33.41 2.29
2058 7466 6.177610 AGTTCGTACAATACCCAAACATCAT 58.822 36.000 0.00 0.00 0.00 2.45
2205 7621 3.117776 TGGCATCAAAGATGCTCAGGTAT 60.118 43.478 25.61 0.00 44.02 2.73
2427 10419 8.859156 CAGTAAATCGGTGAACAATAAAATTGG 58.141 33.333 4.78 0.00 0.00 3.16
2429 10421 9.974980 AACAGTAAATCGGTGAACAATAAAATT 57.025 25.926 0.00 0.00 0.00 1.82
2444 10436 8.689251 TTTAGTCTGAGATGAACAGTAAATCG 57.311 34.615 0.00 0.00 36.81 3.34
2460 10452 0.245539 CTCGGGCGGTTTTAGTCTGA 59.754 55.000 0.00 0.00 0.00 3.27
2462 10454 1.595357 CCTCGGGCGGTTTTAGTCT 59.405 57.895 0.00 0.00 0.00 3.24
2684 15824 2.501723 GCCAGATGTTCCTTCAGGACTA 59.498 50.000 0.00 0.00 45.39 2.59
2725 15865 1.335810 CGGACGATCCATTAGAACGGA 59.664 52.381 0.00 0.00 44.43 4.69
2732 15872 2.900716 TGATTGCGGACGATCCATTA 57.099 45.000 0.00 0.00 35.91 1.90
2810 15960 0.321564 TGTGACTCAATTCGCTGGGG 60.322 55.000 0.00 0.00 0.00 4.96
2874 16026 7.550196 GGCATTTGACAAGGATGTTGAAAATAT 59.450 33.333 2.63 0.00 40.74 1.28
3033 16191 7.798071 ACTGGATCATAATTTGGCATCAATTT 58.202 30.769 2.73 0.00 32.28 1.82
3299 16476 1.607467 AACCCCTGATGTGCTTGGC 60.607 57.895 0.00 0.00 0.00 4.52
3442 16628 4.989168 TGATCATCAGCTTCATCAAGATCG 59.011 41.667 0.00 0.00 34.81 3.69
3670 16856 3.358993 CACGTCACGTCATATCATCATCG 59.641 47.826 0.00 0.00 38.32 3.84
3731 16920 8.771920 TCATGACGGTAGCTTTTAATATATGG 57.228 34.615 0.00 0.00 0.00 2.74
3755 16944 5.957842 TTGATTGACCACACCAGTAATTC 57.042 39.130 0.00 0.00 0.00 2.17
3847 17039 5.062183 CCGGCATGTGTTGATATATAAGTCG 59.938 44.000 0.00 0.00 0.00 4.18
4301 17533 3.683937 CCCGGCCAGCAAACTTGG 61.684 66.667 2.24 0.00 38.78 3.61
4304 17536 3.133365 AACTCCCGGCCAGCAAACT 62.133 57.895 2.24 0.00 0.00 2.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.