Multiple sequence alignment - TraesCS2D01G562400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G562400 chr2D 100.000 4693 0 0 1 4693 634259202 634254510 0.000000e+00 8667.0
1 TraesCS2D01G562400 chr2D 93.269 728 47 2 3964 4691 152877882 152877157 0.000000e+00 1072.0
2 TraesCS2D01G562400 chr2B 93.129 1761 53 21 626 2327 777172058 777170307 0.000000e+00 2519.0
3 TraesCS2D01G562400 chr2B 92.318 729 54 2 3964 4691 169395786 169395059 0.000000e+00 1035.0
4 TraesCS2D01G562400 chr2B 95.893 633 14 5 2357 2982 777170310 777169683 0.000000e+00 1014.0
5 TraesCS2D01G562400 chr2B 95.674 601 23 2 3040 3637 777169680 777169080 0.000000e+00 963.0
6 TraesCS2D01G562400 chr2B 80.808 297 25 14 6 302 777281884 777281620 2.210000e-48 204.0
7 TraesCS2D01G562400 chr2A 92.499 1693 61 22 626 2276 779292293 779293961 0.000000e+00 2362.0
8 TraesCS2D01G562400 chr2A 95.781 711 29 1 3055 3764 779294896 779295606 0.000000e+00 1146.0
9 TraesCS2D01G562400 chr2A 95.958 569 12 6 2377 2941 779293971 779294532 0.000000e+00 913.0
10 TraesCS2D01G562400 chr2A 87.838 592 53 6 6 578 779291531 779292122 0.000000e+00 676.0
11 TraesCS2D01G562400 chr2A 80.392 204 38 2 1544 1746 717172803 717172601 2.260000e-33 154.0
12 TraesCS2D01G562400 chr2A 88.636 88 6 3 2288 2374 11665120 11665204 2.310000e-18 104.0
13 TraesCS2D01G562400 chr2A 87.778 90 8 2 2288 2377 38343771 38343857 8.310000e-18 102.0
14 TraesCS2D01G562400 chr2A 86.598 97 6 6 2288 2381 585208778 585208686 2.990000e-17 100.0
15 TraesCS2D01G562400 chr2A 83.000 100 15 2 2104 2202 613185167 613185069 6.470000e-14 89.8
16 TraesCS2D01G562400 chr1D 93.315 733 47 2 3961 4691 426865546 426866278 0.000000e+00 1081.0
17 TraesCS2D01G562400 chr7B 92.867 729 51 1 3964 4691 482002711 482001983 0.000000e+00 1057.0
18 TraesCS2D01G562400 chrUn 92.603 730 52 2 3964 4691 94297298 94298027 0.000000e+00 1048.0
19 TraesCS2D01G562400 chrUn 92.329 730 54 2 3964 4691 94261517 94262246 0.000000e+00 1037.0
20 TraesCS2D01G562400 chr5D 92.603 730 52 2 3964 4691 66772393 66771664 0.000000e+00 1048.0
21 TraesCS2D01G562400 chr5D 93.103 522 35 1 2416 2937 464492542 464493062 0.000000e+00 763.0
22 TraesCS2D01G562400 chr5D 92.688 506 34 1 3069 3571 464493156 464493661 0.000000e+00 726.0
23 TraesCS2D01G562400 chr5D 91.542 402 28 4 1856 2257 464492060 464492455 2.470000e-152 549.0
24 TraesCS2D01G562400 chr5D 95.268 317 13 1 1433 1747 464491658 464491974 7.010000e-138 501.0
25 TraesCS2D01G562400 chr5D 88.048 251 25 5 1071 1317 464491357 464491606 4.590000e-75 292.0
26 TraesCS2D01G562400 chr5D 87.000 200 26 0 1543 1742 464990657 464990856 4.730000e-55 226.0
27 TraesCS2D01G562400 chr5D 85.644 202 29 0 1542 1743 464916937 464917138 3.680000e-51 213.0
28 TraesCS2D01G562400 chr5D 79.821 223 41 4 2018 2238 464991188 464991408 4.860000e-35 159.0
29 TraesCS2D01G562400 chr5D 78.924 223 43 4 2018 2238 464917485 464917705 1.050000e-31 148.0
30 TraesCS2D01G562400 chr5D 83.838 99 16 0 1172 1270 464990419 464990517 1.390000e-15 95.3
31 TraesCS2D01G562400 chr4D 92.613 731 51 3 3962 4691 359113776 359114504 0.000000e+00 1048.0
32 TraesCS2D01G562400 chr4D 89.655 87 6 1 2288 2374 423945396 423945313 1.790000e-19 108.0
33 TraesCS2D01G562400 chr3D 92.339 731 54 2 3962 4691 527520773 527521502 0.000000e+00 1038.0
34 TraesCS2D01G562400 chr3D 88.636 88 7 1 2288 2375 436676982 436676898 2.310000e-18 104.0
35 TraesCS2D01G562400 chr5A 93.191 514 35 0 2424 2937 584966760 584967273 0.000000e+00 756.0
36 TraesCS2D01G562400 chr5A 92.292 506 36 1 3069 3571 584967349 584967854 0.000000e+00 715.0
37 TraesCS2D01G562400 chr5A 92.269 401 25 4 1860 2260 584966281 584966675 8.820000e-157 564.0
38 TraesCS2D01G562400 chr5A 95.899 317 11 1 1433 1747 584965902 584966218 3.240000e-141 512.0
39 TraesCS2D01G562400 chr5A 86.275 255 26 7 1071 1317 584965579 584965832 7.740000e-68 268.0
40 TraesCS2D01G562400 chr5A 86.567 201 27 0 1542 1742 585234689 585234889 6.110000e-54 222.0
41 TraesCS2D01G562400 chr5A 80.198 303 52 8 1444 1742 585396827 585397125 2.200000e-53 220.0
42 TraesCS2D01G562400 chr5A 78.523 298 50 9 301 595 395245080 395244794 2.880000e-42 183.0
43 TraesCS2D01G562400 chr5A 79.091 220 42 4 2018 2235 585397473 585397690 1.050000e-31 148.0
44 TraesCS2D01G562400 chr5B 92.278 518 40 0 2420 2937 571835763 571835246 0.000000e+00 736.0
45 TraesCS2D01G562400 chr5B 93.004 486 34 0 3069 3554 571835147 571834662 0.000000e+00 710.0
46 TraesCS2D01G562400 chr5B 91.872 406 27 4 1852 2257 571836257 571835858 3.170000e-156 562.0
47 TraesCS2D01G562400 chr5B 96.154 312 10 1 1433 1742 571836684 571836373 4.190000e-140 508.0
48 TraesCS2D01G562400 chr5B 88.000 200 24 0 1543 1742 572342096 572342295 2.180000e-58 237.0
49 TraesCS2D01G562400 chr5B 83.784 259 30 10 1071 1317 571837000 571836742 7.850000e-58 235.0
50 TraesCS2D01G562400 chr5B 85.644 202 29 0 1542 1743 572142160 572142361 3.680000e-51 213.0
51 TraesCS2D01G562400 chr5B 78.924 223 43 4 2018 2238 572142699 572142919 1.050000e-31 148.0
52 TraesCS2D01G562400 chr5B 78.829 222 45 2 2018 2238 572342641 572342861 1.050000e-31 148.0
53 TraesCS2D01G562400 chr5B 83.178 107 14 2 2270 2375 521983154 521983051 1.390000e-15 95.3
54 TraesCS2D01G562400 chr5B 82.828 99 17 0 1172 1270 572341858 572341956 6.470000e-14 89.8
55 TraesCS2D01G562400 chr6D 78.738 301 52 10 302 592 470605029 470605327 1.720000e-44 191.0
56 TraesCS2D01G562400 chr6A 90.000 90 6 1 2288 2377 463530875 463530961 3.840000e-21 113.0
57 TraesCS2D01G562400 chr6B 88.636 88 9 1 2286 2373 642350322 642350236 6.420000e-19 106.0
58 TraesCS2D01G562400 chr3B 80.392 153 18 7 406 556 22668192 22668050 6.420000e-19 106.0
59 TraesCS2D01G562400 chr7D 85.567 97 11 2 2282 2378 498229834 498229927 1.070000e-16 99.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G562400 chr2D 634254510 634259202 4692 True 8667.000000 8667 100.000000 1 4693 1 chr2D.!!$R2 4692
1 TraesCS2D01G562400 chr2D 152877157 152877882 725 True 1072.000000 1072 93.269000 3964 4691 1 chr2D.!!$R1 727
2 TraesCS2D01G562400 chr2B 777169080 777172058 2978 True 1498.666667 2519 94.898667 626 3637 3 chr2B.!!$R3 3011
3 TraesCS2D01G562400 chr2B 169395059 169395786 727 True 1035.000000 1035 92.318000 3964 4691 1 chr2B.!!$R1 727
4 TraesCS2D01G562400 chr2A 779291531 779295606 4075 False 1274.250000 2362 93.019000 6 3764 4 chr2A.!!$F3 3758
5 TraesCS2D01G562400 chr1D 426865546 426866278 732 False 1081.000000 1081 93.315000 3961 4691 1 chr1D.!!$F1 730
6 TraesCS2D01G562400 chr7B 482001983 482002711 728 True 1057.000000 1057 92.867000 3964 4691 1 chr7B.!!$R1 727
7 TraesCS2D01G562400 chrUn 94297298 94298027 729 False 1048.000000 1048 92.603000 3964 4691 1 chrUn.!!$F2 727
8 TraesCS2D01G562400 chrUn 94261517 94262246 729 False 1037.000000 1037 92.329000 3964 4691 1 chrUn.!!$F1 727
9 TraesCS2D01G562400 chr5D 66771664 66772393 729 True 1048.000000 1048 92.603000 3964 4691 1 chr5D.!!$R1 727
10 TraesCS2D01G562400 chr5D 464491357 464493661 2304 False 566.200000 763 92.129800 1071 3571 5 chr5D.!!$F1 2500
11 TraesCS2D01G562400 chr4D 359113776 359114504 728 False 1048.000000 1048 92.613000 3962 4691 1 chr4D.!!$F1 729
12 TraesCS2D01G562400 chr3D 527520773 527521502 729 False 1038.000000 1038 92.339000 3962 4691 1 chr3D.!!$F1 729
13 TraesCS2D01G562400 chr5A 584965579 584967854 2275 False 563.000000 756 91.985200 1071 3571 5 chr5A.!!$F2 2500
14 TraesCS2D01G562400 chr5B 571834662 571837000 2338 True 550.200000 736 91.418400 1071 3554 5 chr5B.!!$R2 2483

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
135 136 0.267960 AGATATGAGGGGTCCCGGTT 59.732 55.0 0.48 0.0 41.95 4.44 F
1532 1747 0.322816 TCACCAAGATGCAGAAGGCC 60.323 55.0 0.00 0.0 43.89 5.19 F
2296 2551 0.622738 ATCCCACATGCTCCCTCTGT 60.623 55.0 0.00 0.0 0.00 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1706 1921 1.622607 CGAAGGTGTAGGGGATGCCA 61.623 60.0 5.30 0.00 0.0 4.92 R
2417 2681 0.105408 AAAACCCTGCTCGTACGTGT 59.895 50.0 16.05 1.73 0.0 4.49 R
4095 4651 0.033208 GGACATGATGGGGCCAAAGA 60.033 55.0 4.39 0.00 0.0 2.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
78 79 1.257750 TGACAGACATGCCTAGGCGT 61.258 55.000 28.28 25.94 45.51 5.68
99 100 1.630878 GCCTAGACCTCCCCATATTGG 59.369 57.143 0.00 0.00 37.25 3.16
103 104 2.081585 GACCTCCCCATATTGGCCCC 62.082 65.000 0.00 0.00 35.79 5.80
115 116 3.909651 GGCCCCCAGGTTTGGTCA 61.910 66.667 0.00 0.00 43.40 4.02
116 117 2.200092 GCCCCCAGGTTTGGTCAA 59.800 61.111 0.00 0.00 43.40 3.18
129 130 4.200092 GTTTGGTCAAGATATGAGGGGTC 58.800 47.826 0.00 0.00 39.19 4.46
135 136 0.267960 AGATATGAGGGGTCCCGGTT 59.732 55.000 0.48 0.00 41.95 4.44
192 193 0.788391 GGGTCACGTTTTCTAGCACG 59.212 55.000 7.23 7.23 42.29 5.34
207 208 1.214673 AGCACGACATAGTAGGGAGGA 59.785 52.381 0.00 0.00 0.00 3.71
210 227 1.145325 ACGACATAGTAGGGAGGAGGG 59.855 57.143 0.00 0.00 0.00 4.30
220 237 0.338814 GGGAGGAGGGTTGAGGAGTA 59.661 60.000 0.00 0.00 0.00 2.59
223 240 2.627217 GGAGGAGGGTTGAGGAGTATGT 60.627 54.545 0.00 0.00 0.00 2.29
224 241 2.696187 GAGGAGGGTTGAGGAGTATGTC 59.304 54.545 0.00 0.00 0.00 3.06
226 243 2.432510 GGAGGGTTGAGGAGTATGTCTG 59.567 54.545 0.00 0.00 0.00 3.51
227 244 1.834263 AGGGTTGAGGAGTATGTCTGC 59.166 52.381 0.00 0.00 34.62 4.26
266 283 2.785357 TGGTGGGACCCAAAAGAAAT 57.215 45.000 16.98 0.00 37.50 2.17
278 295 9.366216 GGACCCAAAAGAAATAAATATCAACAC 57.634 33.333 0.00 0.00 0.00 3.32
305 322 4.704965 AGCTAGGAACGGAACCAATATTC 58.295 43.478 0.00 0.00 0.00 1.75
317 334 6.038161 CGGAACCAATATTCAATTCAGTGCTA 59.962 38.462 5.62 0.00 0.00 3.49
328 345 1.117994 TCAGTGCTAGGGCTCATCTG 58.882 55.000 0.00 0.00 39.59 2.90
331 348 0.813210 GTGCTAGGGCTCATCTGCAC 60.813 60.000 7.32 7.32 42.69 4.57
332 349 1.227793 GCTAGGGCTCATCTGCACC 60.228 63.158 0.00 0.00 36.97 5.01
333 350 1.694133 GCTAGGGCTCATCTGCACCT 61.694 60.000 0.00 0.00 36.97 4.00
340 357 2.573369 GCTCATCTGCACCTGATGAAT 58.427 47.619 15.55 0.00 44.11 2.57
342 359 4.132336 GCTCATCTGCACCTGATGAATAA 58.868 43.478 15.55 0.00 44.11 1.40
415 434 1.069204 AGATGATTATGTGCGCGAGGT 59.931 47.619 12.10 0.00 0.00 3.85
485 505 6.908870 AAAAAGACAAAATGAGCTCCAAAC 57.091 33.333 12.15 0.00 0.00 2.93
488 508 3.005155 AGACAAAATGAGCTCCAAACAGC 59.995 43.478 12.15 0.00 39.99 4.40
491 511 2.472695 AATGAGCTCCAAACAGCGTA 57.527 45.000 12.15 0.00 44.82 4.42
516 536 7.099120 AGTTTTCAAAAGCTTCTCACATGTTT 58.901 30.769 0.00 0.00 0.00 2.83
517 537 6.890663 TTTCAAAAGCTTCTCACATGTTTG 57.109 33.333 0.00 0.00 0.00 2.93
527 547 9.199982 AGCTTCTCACATGTTTGAAAATTATTG 57.800 29.630 0.00 0.00 0.00 1.90
545 565 1.519408 TGTTTTTGCCGAGAGCTACC 58.481 50.000 0.00 0.00 44.23 3.18
556 576 2.223829 CGAGAGCTACCGAAATGTCCAT 60.224 50.000 1.37 0.00 0.00 3.41
560 580 2.103263 AGCTACCGAAATGTCCATCCTC 59.897 50.000 0.00 0.00 0.00 3.71
561 581 2.807108 GCTACCGAAATGTCCATCCTCC 60.807 54.545 0.00 0.00 0.00 4.30
564 584 1.290203 CGAAATGTCCATCCTCCACG 58.710 55.000 0.00 0.00 0.00 4.94
578 598 2.126502 CACGGAATTTGGCACGGC 60.127 61.111 0.00 0.00 0.00 5.68
581 601 1.154035 CGGAATTTGGCACGGCTTC 60.154 57.895 0.00 0.00 0.00 3.86
582 602 1.861542 CGGAATTTGGCACGGCTTCA 61.862 55.000 0.00 0.00 0.00 3.02
583 603 0.532115 GGAATTTGGCACGGCTTCAT 59.468 50.000 0.00 0.00 0.00 2.57
584 604 1.632422 GAATTTGGCACGGCTTCATG 58.368 50.000 0.00 0.00 0.00 3.07
585 605 0.390209 AATTTGGCACGGCTTCATGC 60.390 50.000 0.00 0.00 41.29 4.06
586 606 1.534336 ATTTGGCACGGCTTCATGCA 61.534 50.000 0.00 0.00 43.93 3.96
587 607 2.419057 TTTGGCACGGCTTCATGCAC 62.419 55.000 0.00 0.00 43.93 4.57
588 608 3.364441 GGCACGGCTTCATGCACA 61.364 61.111 0.00 0.00 43.93 4.57
589 609 2.703798 GGCACGGCTTCATGCACAT 61.704 57.895 0.00 0.00 43.93 3.21
591 611 1.925415 GCACGGCTTCATGCACATGA 61.925 55.000 9.23 9.23 45.30 3.07
624 644 9.672086 TTTTTAATGATTTTACTGTTCCTCACG 57.328 29.630 0.00 0.00 0.00 4.35
654 797 2.418083 CCCGAGAGCCAAAATGCCC 61.418 63.158 0.00 0.00 0.00 5.36
661 804 0.541764 AGCCAAAATGCCCTTTCCGA 60.542 50.000 0.00 0.00 0.00 4.55
784 938 4.041740 TCGCTCGATTATAGTTGCAACT 57.958 40.909 32.97 32.97 42.91 3.16
832 986 1.069358 GAATCAGTCCATCGACCTCCC 59.931 57.143 0.00 0.00 40.12 4.30
864 1020 3.325293 TGATCACTCCTCTGTTGAAGC 57.675 47.619 0.00 0.00 0.00 3.86
986 1144 4.337304 TCCTGGGGCTGCCTCTCA 62.337 66.667 21.13 13.86 0.00 3.27
1000 1158 2.867624 CCTCTCATCTCCTCTCCTCTG 58.132 57.143 0.00 0.00 0.00 3.35
1062 1227 2.367567 ACCCACTTCTTTGCTCGACTTA 59.632 45.455 0.00 0.00 0.00 2.24
1063 1228 2.996621 CCCACTTCTTTGCTCGACTTAG 59.003 50.000 0.00 0.00 0.00 2.18
1532 1747 0.322816 TCACCAAGATGCAGAAGGCC 60.323 55.000 0.00 0.00 43.89 5.19
1814 2058 5.026462 AGTATATGTCAAAAGTCGTCGTCG 58.974 41.667 0.00 0.00 38.55 5.12
2085 2334 1.210155 GATCAGCGGCAACAACACC 59.790 57.895 1.45 0.00 0.00 4.16
2260 2509 1.204941 AGATGCACTTCAGGGTACGTC 59.795 52.381 0.00 0.00 0.00 4.34
2286 2541 4.278170 ACGTATAATTTGCCATCCCACATG 59.722 41.667 0.00 0.00 0.00 3.21
2296 2551 0.622738 ATCCCACATGCTCCCTCTGT 60.623 55.000 0.00 0.00 0.00 3.41
2309 2564 8.902806 CATGCTCCCTCTGTAAACAAATATAAA 58.097 33.333 0.00 0.00 0.00 1.40
2346 2601 6.887376 TCATGAAAGTAGTGATCTAAACGC 57.113 37.500 0.00 0.00 0.00 4.84
2347 2602 6.631016 TCATGAAAGTAGTGATCTAAACGCT 58.369 36.000 0.00 0.00 0.00 5.07
2348 2603 6.752351 TCATGAAAGTAGTGATCTAAACGCTC 59.248 38.462 0.00 0.00 0.00 5.03
2349 2604 6.268825 TGAAAGTAGTGATCTAAACGCTCT 57.731 37.500 0.00 0.00 0.00 4.09
2350 2605 6.688578 TGAAAGTAGTGATCTAAACGCTCTT 58.311 36.000 0.00 0.00 0.00 2.85
2351 2606 7.823665 TGAAAGTAGTGATCTAAACGCTCTTA 58.176 34.615 0.00 0.00 0.00 2.10
2352 2607 8.467598 TGAAAGTAGTGATCTAAACGCTCTTAT 58.532 33.333 0.00 0.00 0.00 1.73
2353 2608 9.947669 GAAAGTAGTGATCTAAACGCTCTTATA 57.052 33.333 0.00 0.00 0.00 0.98
2359 2614 9.988815 AGTGATCTAAACGCTCTTATATTTCAT 57.011 29.630 0.00 0.00 0.00 2.57
2364 2619 9.188588 TCTAAACGCTCTTATATTTCATTACGG 57.811 33.333 0.00 0.00 0.00 4.02
2365 2620 9.188588 CTAAACGCTCTTATATTTCATTACGGA 57.811 33.333 0.00 0.00 0.00 4.69
2366 2621 7.404139 AACGCTCTTATATTTCATTACGGAC 57.596 36.000 0.00 0.00 0.00 4.79
2390 2645 5.288712 CGGAGTACTACATTGTCATTGTCAC 59.711 44.000 5.80 2.49 0.00 3.67
2407 2671 1.960689 TCACTTCGTCCATCACTCACA 59.039 47.619 0.00 0.00 0.00 3.58
2410 2674 2.274437 CTTCGTCCATCACTCACATGG 58.726 52.381 0.00 0.00 42.16 3.66
2411 2675 1.266178 TCGTCCATCACTCACATGGT 58.734 50.000 0.00 0.00 41.59 3.55
2414 2678 2.166459 CGTCCATCACTCACATGGTACT 59.834 50.000 0.00 0.00 41.59 2.73
2416 2680 3.935203 GTCCATCACTCACATGGTACTTG 59.065 47.826 0.00 0.00 41.59 3.16
2417 2681 3.837731 TCCATCACTCACATGGTACTTGA 59.162 43.478 0.00 0.00 41.59 3.02
2418 2682 3.935203 CCATCACTCACATGGTACTTGAC 59.065 47.826 0.00 0.00 36.74 3.18
2426 2707 2.553602 ACATGGTACTTGACACGTACGA 59.446 45.455 24.41 11.59 38.44 3.43
2943 3224 1.343277 ACCGGCCATGGTACCTACTTA 60.343 52.381 14.67 0.00 41.55 2.24
2944 3225 1.764134 CCGGCCATGGTACCTACTTAA 59.236 52.381 14.67 0.00 0.00 1.85
2952 3233 6.453092 CCATGGTACCTACTTAATTACCTCG 58.547 44.000 14.36 0.00 35.86 4.63
2958 3239 4.156915 CCTACTTAATTACCTCGATCGCG 58.843 47.826 11.09 3.62 39.35 5.87
2972 3253 2.389998 GATCGCGTCCTCATCTTTCTC 58.610 52.381 5.77 0.00 0.00 2.87
2975 3256 1.403679 CGCGTCCTCATCTTTCTCTCT 59.596 52.381 0.00 0.00 0.00 3.10
2977 3258 2.687935 GCGTCCTCATCTTTCTCTCTCT 59.312 50.000 0.00 0.00 0.00 3.10
2982 3263 5.593909 GTCCTCATCTTTCTCTCTCTCATCA 59.406 44.000 0.00 0.00 0.00 3.07
2983 3264 6.096705 GTCCTCATCTTTCTCTCTCTCATCAA 59.903 42.308 0.00 0.00 0.00 2.57
2984 3265 6.096705 TCCTCATCTTTCTCTCTCTCATCAAC 59.903 42.308 0.00 0.00 0.00 3.18
2996 3292 1.079127 CATCAACCGACCGCTCCTT 60.079 57.895 0.00 0.00 0.00 3.36
2999 3295 1.738099 CAACCGACCGCTCCTTCTG 60.738 63.158 0.00 0.00 0.00 3.02
3001 3297 3.764466 CCGACCGCTCCTTCTGCT 61.764 66.667 0.00 0.00 0.00 4.24
3002 3298 2.262915 CGACCGCTCCTTCTGCTT 59.737 61.111 0.00 0.00 0.00 3.91
3003 3299 2.097038 CGACCGCTCCTTCTGCTTG 61.097 63.158 0.00 0.00 0.00 4.01
3004 3300 1.743252 GACCGCTCCTTCTGCTTGG 60.743 63.158 0.00 0.00 0.00 3.61
3005 3301 2.172483 GACCGCTCCTTCTGCTTGGA 62.172 60.000 0.00 0.00 0.00 3.53
3010 3306 2.285827 CTCCTTCTGCTTGGAGTACG 57.714 55.000 0.00 0.00 43.49 3.67
3025 3321 5.588240 TGGAGTACGTGTTGATGCTTATAG 58.412 41.667 0.00 0.00 0.00 1.31
3026 3322 4.982916 GGAGTACGTGTTGATGCTTATAGG 59.017 45.833 0.00 0.00 0.00 2.57
3030 3326 5.847111 ACGTGTTGATGCTTATAGGAGTA 57.153 39.130 0.00 0.00 0.00 2.59
3032 3328 7.520451 ACGTGTTGATGCTTATAGGAGTATA 57.480 36.000 0.00 0.00 0.00 1.47
3034 3330 8.029522 ACGTGTTGATGCTTATAGGAGTATATG 58.970 37.037 0.00 0.00 0.00 1.78
3359 3911 1.212935 GAGCCATACCTGGACACCATT 59.787 52.381 0.00 0.00 46.37 3.16
3554 4109 4.335647 CTCACCACCAAGCCGGCT 62.336 66.667 27.08 27.08 39.03 5.52
3664 4220 2.310538 AGTTAATTAGCCCCTGCATGC 58.689 47.619 11.82 11.82 41.13 4.06
3725 4281 5.729454 GCAAGGTTTTGATCGCATATACGTT 60.729 40.000 0.00 0.00 36.36 3.99
3751 4307 3.063452 GTGTGTGTGAGTTCGTTGTCAAT 59.937 43.478 0.00 0.00 0.00 2.57
3756 4312 2.096909 GTGAGTTCGTTGTCAATGTCCG 60.097 50.000 4.72 0.00 0.00 4.79
3764 4320 3.186409 CGTTGTCAATGTCCGATGAACTT 59.814 43.478 0.00 0.00 0.00 2.66
3765 4321 4.466828 GTTGTCAATGTCCGATGAACTTG 58.533 43.478 0.00 0.00 0.00 3.16
3766 4322 4.001618 TGTCAATGTCCGATGAACTTGA 57.998 40.909 0.00 0.00 0.00 3.02
3767 4323 4.578871 TGTCAATGTCCGATGAACTTGAT 58.421 39.130 0.00 0.00 0.00 2.57
3768 4324 5.729510 TGTCAATGTCCGATGAACTTGATA 58.270 37.500 0.00 0.00 0.00 2.15
3769 4325 6.348498 TGTCAATGTCCGATGAACTTGATAT 58.652 36.000 0.00 0.00 0.00 1.63
3770 4326 7.496747 TGTCAATGTCCGATGAACTTGATATA 58.503 34.615 0.00 0.00 0.00 0.86
3771 4327 7.653311 TGTCAATGTCCGATGAACTTGATATAG 59.347 37.037 0.00 0.00 0.00 1.31
3772 4328 7.116948 GTCAATGTCCGATGAACTTGATATAGG 59.883 40.741 0.00 0.00 0.00 2.57
3773 4329 6.672266 ATGTCCGATGAACTTGATATAGGT 57.328 37.500 0.00 0.00 0.00 3.08
3774 4330 6.479972 TGTCCGATGAACTTGATATAGGTT 57.520 37.500 0.00 0.00 0.00 3.50
3775 4331 6.513180 TGTCCGATGAACTTGATATAGGTTC 58.487 40.000 0.00 0.00 43.53 3.62
3776 4332 6.323996 TGTCCGATGAACTTGATATAGGTTCT 59.676 38.462 12.79 3.44 43.60 3.01
3777 4333 6.642950 GTCCGATGAACTTGATATAGGTTCTG 59.357 42.308 12.79 6.22 43.60 3.02
3778 4334 6.323996 TCCGATGAACTTGATATAGGTTCTGT 59.676 38.462 12.79 5.49 43.60 3.41
3779 4335 7.504574 TCCGATGAACTTGATATAGGTTCTGTA 59.495 37.037 12.79 0.00 43.60 2.74
3780 4336 7.810282 CCGATGAACTTGATATAGGTTCTGTAG 59.190 40.741 12.79 0.00 43.60 2.74
3781 4337 8.353684 CGATGAACTTGATATAGGTTCTGTAGT 58.646 37.037 12.79 0.00 43.60 2.73
3782 4338 9.469807 GATGAACTTGATATAGGTTCTGTAGTG 57.530 37.037 12.79 0.00 43.60 2.74
3783 4339 8.589701 TGAACTTGATATAGGTTCTGTAGTGA 57.410 34.615 12.79 0.00 43.60 3.41
3784 4340 9.201989 TGAACTTGATATAGGTTCTGTAGTGAT 57.798 33.333 12.79 0.00 43.60 3.06
3785 4341 9.469807 GAACTTGATATAGGTTCTGTAGTGATG 57.530 37.037 0.00 0.00 40.95 3.07
3786 4342 7.437748 ACTTGATATAGGTTCTGTAGTGATGC 58.562 38.462 0.00 0.00 0.00 3.91
3787 4343 6.346477 TGATATAGGTTCTGTAGTGATGCC 57.654 41.667 0.00 0.00 0.00 4.40
3788 4344 5.838521 TGATATAGGTTCTGTAGTGATGCCA 59.161 40.000 0.00 0.00 0.00 4.92
3789 4345 6.326323 TGATATAGGTTCTGTAGTGATGCCAA 59.674 38.462 0.00 0.00 0.00 4.52
3790 4346 3.788227 AGGTTCTGTAGTGATGCCAAA 57.212 42.857 0.00 0.00 0.00 3.28
3791 4347 4.098914 AGGTTCTGTAGTGATGCCAAAA 57.901 40.909 0.00 0.00 0.00 2.44
3792 4348 4.666512 AGGTTCTGTAGTGATGCCAAAAT 58.333 39.130 0.00 0.00 0.00 1.82
3793 4349 5.079643 AGGTTCTGTAGTGATGCCAAAATT 58.920 37.500 0.00 0.00 0.00 1.82
3794 4350 5.539955 AGGTTCTGTAGTGATGCCAAAATTT 59.460 36.000 0.00 0.00 0.00 1.82
3795 4351 6.041979 AGGTTCTGTAGTGATGCCAAAATTTT 59.958 34.615 0.00 0.00 0.00 1.82
3796 4352 6.366061 GGTTCTGTAGTGATGCCAAAATTTTC 59.634 38.462 0.00 0.00 0.00 2.29
3797 4353 6.647334 TCTGTAGTGATGCCAAAATTTTCA 57.353 33.333 0.00 0.00 0.00 2.69
3798 4354 6.680810 TCTGTAGTGATGCCAAAATTTTCAG 58.319 36.000 0.00 1.96 0.00 3.02
3799 4355 5.782047 TGTAGTGATGCCAAAATTTTCAGG 58.218 37.500 0.00 1.61 0.00 3.86
3800 4356 5.538053 TGTAGTGATGCCAAAATTTTCAGGA 59.462 36.000 10.66 3.34 0.00 3.86
3801 4357 5.750352 AGTGATGCCAAAATTTTCAGGAT 57.250 34.783 10.66 7.60 0.00 3.24
3802 4358 5.484715 AGTGATGCCAAAATTTTCAGGATG 58.515 37.500 10.66 0.00 37.54 3.51
3803 4359 4.632688 GTGATGCCAAAATTTTCAGGATGG 59.367 41.667 10.66 5.85 36.16 3.51
3804 4360 3.699411 TGCCAAAATTTTCAGGATGGG 57.301 42.857 10.66 4.55 36.16 4.00
3805 4361 3.246301 TGCCAAAATTTTCAGGATGGGA 58.754 40.909 10.66 3.38 36.16 4.37
3806 4362 3.261390 TGCCAAAATTTTCAGGATGGGAG 59.739 43.478 10.66 0.00 36.16 4.30
3807 4363 3.261643 GCCAAAATTTTCAGGATGGGAGT 59.738 43.478 10.66 0.00 36.16 3.85
3808 4364 4.824289 CCAAAATTTTCAGGATGGGAGTG 58.176 43.478 0.00 0.00 36.16 3.51
3809 4365 4.322953 CCAAAATTTTCAGGATGGGAGTGG 60.323 45.833 0.00 0.00 36.16 4.00
3810 4366 2.834638 ATTTTCAGGATGGGAGTGGG 57.165 50.000 0.00 0.00 36.16 4.61
3811 4367 0.039618 TTTTCAGGATGGGAGTGGGC 59.960 55.000 0.00 0.00 36.16 5.36
3812 4368 1.863155 TTTCAGGATGGGAGTGGGCC 61.863 60.000 0.00 0.00 36.16 5.80
3813 4369 4.181010 CAGGATGGGAGTGGGCCG 62.181 72.222 0.00 0.00 0.00 6.13
3814 4370 4.414956 AGGATGGGAGTGGGCCGA 62.415 66.667 0.00 0.00 0.00 5.54
3815 4371 4.176752 GGATGGGAGTGGGCCGAC 62.177 72.222 10.38 10.38 0.00 4.79
3816 4372 4.176752 GATGGGAGTGGGCCGACC 62.177 72.222 15.08 6.06 40.81 4.79
3824 4380 4.386951 TGGGCCGACCACGACATG 62.387 66.667 0.00 0.00 46.80 3.21
3825 4381 4.077184 GGGCCGACCACGACATGA 62.077 66.667 0.00 0.00 42.66 3.07
3826 4382 2.813908 GGCCGACCACGACATGAC 60.814 66.667 0.00 0.00 42.66 3.06
3827 4383 2.813908 GCCGACCACGACATGACC 60.814 66.667 0.00 0.00 42.66 4.02
3828 4384 2.125673 CCGACCACGACATGACCC 60.126 66.667 0.00 0.00 42.66 4.46
3829 4385 2.646175 CCGACCACGACATGACCCT 61.646 63.158 0.00 0.00 42.66 4.34
3830 4386 1.446099 CGACCACGACATGACCCTG 60.446 63.158 0.00 0.00 42.66 4.45
3831 4387 1.671742 GACCACGACATGACCCTGT 59.328 57.895 0.00 0.00 0.00 4.00
3832 4388 0.670546 GACCACGACATGACCCTGTG 60.671 60.000 0.00 0.00 0.00 3.66
3833 4389 1.375908 CCACGACATGACCCTGTGG 60.376 63.158 0.00 2.91 43.55 4.17
3843 4399 2.757099 CCCTGTGGGCATCAAGGC 60.757 66.667 0.00 0.00 35.35 4.35
3852 4408 2.657297 GCATCAAGGCCACTTTGGA 58.343 52.632 5.01 0.00 40.96 3.53
3853 4409 0.529378 GCATCAAGGCCACTTTGGAG 59.471 55.000 5.01 0.00 40.96 3.86
3854 4410 1.180029 CATCAAGGCCACTTTGGAGG 58.820 55.000 5.01 0.00 40.96 4.30
3855 4411 0.613012 ATCAAGGCCACTTTGGAGGC 60.613 55.000 5.01 0.00 46.22 4.70
3859 4415 3.291611 GCCACTTTGGAGGCCATG 58.708 61.111 5.01 0.00 40.96 3.66
3860 4416 2.353610 GCCACTTTGGAGGCCATGG 61.354 63.158 7.63 7.63 40.96 3.66
3861 4417 1.683365 CCACTTTGGAGGCCATGGG 60.683 63.158 15.13 0.00 40.96 4.00
3877 4433 4.734652 GGCCGACCCATTTCAAGA 57.265 55.556 0.00 0.00 0.00 3.02
3878 4434 2.955609 GGCCGACCCATTTCAAGAA 58.044 52.632 0.00 0.00 0.00 2.52
3879 4435 1.253100 GGCCGACCCATTTCAAGAAA 58.747 50.000 0.00 0.00 34.46 2.52
3880 4436 1.616374 GGCCGACCCATTTCAAGAAAA 59.384 47.619 0.00 0.00 33.56 2.29
3881 4437 2.352715 GGCCGACCCATTTCAAGAAAAG 60.353 50.000 0.00 0.00 33.56 2.27
3882 4438 2.296190 GCCGACCCATTTCAAGAAAAGT 59.704 45.455 0.00 0.00 33.56 2.66
3883 4439 3.611766 GCCGACCCATTTCAAGAAAAGTC 60.612 47.826 0.00 6.52 33.56 3.01
3884 4440 3.568007 CCGACCCATTTCAAGAAAAGTCA 59.432 43.478 16.75 0.00 32.85 3.41
3885 4441 4.320494 CCGACCCATTTCAAGAAAAGTCAG 60.320 45.833 16.75 11.92 32.85 3.51
3886 4442 4.275936 CGACCCATTTCAAGAAAAGTCAGT 59.724 41.667 16.75 5.43 32.85 3.41
3887 4443 5.520376 ACCCATTTCAAGAAAAGTCAGTG 57.480 39.130 0.00 0.00 33.56 3.66
3888 4444 4.342092 ACCCATTTCAAGAAAAGTCAGTGG 59.658 41.667 0.00 2.11 33.56 4.00
3889 4445 4.301628 CCATTTCAAGAAAAGTCAGTGGC 58.698 43.478 0.00 0.00 33.56 5.01
3890 4446 4.301628 CATTTCAAGAAAAGTCAGTGGCC 58.698 43.478 0.00 0.00 33.56 5.36
3891 4447 3.297134 TTCAAGAAAAGTCAGTGGCCT 57.703 42.857 3.32 0.00 0.00 5.19
3892 4448 2.851195 TCAAGAAAAGTCAGTGGCCTC 58.149 47.619 3.32 0.00 0.00 4.70
3893 4449 2.172505 TCAAGAAAAGTCAGTGGCCTCA 59.827 45.455 3.32 0.00 0.00 3.86
3894 4450 2.262423 AGAAAAGTCAGTGGCCTCAC 57.738 50.000 3.32 0.00 43.93 3.51
3904 4460 2.423446 GGCCTCACTAGCCCGATG 59.577 66.667 0.00 0.00 45.16 3.84
3905 4461 2.423446 GCCTCACTAGCCCGATGG 59.577 66.667 0.00 0.00 0.00 3.51
3921 4477 4.815108 GGGCATCCCGGGTCAACC 62.815 72.222 22.86 17.47 32.13 3.77
3939 4495 5.705609 CAACCCAAGTTGTAGCTTTATGT 57.294 39.130 1.45 0.00 46.88 2.29
3940 4496 6.811253 CAACCCAAGTTGTAGCTTTATGTA 57.189 37.500 1.45 0.00 46.88 2.29
3941 4497 6.608610 CAACCCAAGTTGTAGCTTTATGTAC 58.391 40.000 1.45 0.00 46.88 2.90
3942 4498 6.123045 ACCCAAGTTGTAGCTTTATGTACT 57.877 37.500 1.45 0.00 0.00 2.73
3943 4499 6.540083 ACCCAAGTTGTAGCTTTATGTACTT 58.460 36.000 1.45 0.00 0.00 2.24
3944 4500 7.002276 ACCCAAGTTGTAGCTTTATGTACTTT 58.998 34.615 1.45 0.00 0.00 2.66
3945 4501 7.504574 ACCCAAGTTGTAGCTTTATGTACTTTT 59.495 33.333 1.45 0.00 0.00 2.27
3946 4502 8.357402 CCCAAGTTGTAGCTTTATGTACTTTTT 58.643 33.333 1.45 0.00 0.00 1.94
3977 4533 1.651737 TACTTAGGCCAACTCCAGCA 58.348 50.000 5.01 0.00 0.00 4.41
3994 4550 1.302192 CACACGACCCCAAACGGAT 60.302 57.895 0.00 0.00 0.00 4.18
4009 4565 0.808125 CGGATGTTCATTTTGCCCGA 59.192 50.000 0.00 0.00 37.87 5.14
4172 4730 6.197468 TCAATGTTTAAAACTAGTTTGCACGC 59.803 34.615 21.22 11.24 32.36 5.34
4188 4746 4.428209 TGCACGCCCAAATATTAATTGTG 58.572 39.130 0.00 0.00 0.00 3.33
4285 4846 7.137490 TGTCTTGAATGAACATAAGAAGCAG 57.863 36.000 0.00 0.00 31.64 4.24
4442 5003 4.040339 GGGGTTCAACATTTTCACCTTGAT 59.960 41.667 0.00 0.00 0.00 2.57
4446 5007 7.877612 GGGTTCAACATTTTCACCTTGATAATT 59.122 33.333 0.00 0.00 27.95 1.40
4462 5023 8.129211 CCTTGATAATTAAATCCTTGGTCGAAC 58.871 37.037 0.00 0.00 0.00 3.95
4474 5035 3.536956 TGGTCGAACATCCTGTTATCC 57.463 47.619 0.00 0.00 41.28 2.59
4500 5061 3.416119 GTCCTCGACGATCATGTTGTA 57.584 47.619 0.00 0.00 0.00 2.41
4525 5086 2.618442 TCACACAAGCAGTCATCACA 57.382 45.000 0.00 0.00 0.00 3.58
4528 5089 3.072211 CACACAAGCAGTCATCACATCT 58.928 45.455 0.00 0.00 0.00 2.90
4559 5121 2.963101 CCTTCATCCCATGTCAATGCAT 59.037 45.455 0.00 0.00 31.93 3.96
4581 5143 2.419021 GGTTTCGAACGATACCCCATCA 60.419 50.000 20.23 0.00 39.34 3.07
4691 5253 5.048713 GGGTTCGAGATTGTCTTCACAAAAT 60.049 40.000 0.00 0.00 45.78 1.82
4692 5254 6.438763 GGTTCGAGATTGTCTTCACAAAATT 58.561 36.000 0.00 0.00 45.78 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.125713 CACATGGCGCGAGTGGTA 60.126 61.111 12.10 0.00 0.00 3.25
16 17 1.519234 CATCTCGCCGTGCTAAGCA 60.519 57.895 0.00 0.00 35.60 3.91
18 19 1.592669 CCCATCTCGCCGTGCTAAG 60.593 63.158 0.00 0.00 0.00 2.18
19 20 2.292794 GACCCATCTCGCCGTGCTAA 62.293 60.000 0.00 0.00 0.00 3.09
72 73 1.455217 GGAGGTCTAGGCACGCCTA 60.455 63.158 16.74 16.74 46.14 3.93
78 79 2.338809 CAATATGGGGAGGTCTAGGCA 58.661 52.381 0.00 0.00 0.00 4.75
83 84 1.068352 GGGCCAATATGGGGAGGTCT 61.068 60.000 4.39 0.00 38.19 3.85
115 116 0.267960 ACCGGGACCCCTCATATCTT 59.732 55.000 6.32 0.00 0.00 2.40
116 117 0.267960 AACCGGGACCCCTCATATCT 59.732 55.000 6.32 0.00 0.00 1.98
129 130 3.134081 CCTATATGTATGGGCTAACCGGG 59.866 52.174 6.32 0.00 44.64 5.73
168 169 2.069273 CTAGAAAACGTGACCCAGCTG 58.931 52.381 6.78 6.78 0.00 4.24
179 180 4.733887 CCTACTATGTCGTGCTAGAAAACG 59.266 45.833 0.00 0.00 41.11 3.60
192 193 2.966516 CAACCCTCCTCCCTACTATGTC 59.033 54.545 0.00 0.00 0.00 3.06
207 208 1.834263 GCAGACATACTCCTCAACCCT 59.166 52.381 0.00 0.00 0.00 4.34
210 227 3.876274 TCTGCAGACATACTCCTCAAC 57.124 47.619 13.74 0.00 0.00 3.18
220 237 4.570930 CAGATATGAGCATCTGCAGACAT 58.429 43.478 20.97 19.31 43.95 3.06
242 259 2.307686 TCTTTTGGGTCCCACCATAGAC 59.692 50.000 11.24 0.00 41.02 2.59
278 295 3.934068 TGGTTCCGTTCCTAGCTTTAAG 58.066 45.455 0.00 0.00 0.00 1.85
280 297 4.563140 ATTGGTTCCGTTCCTAGCTTTA 57.437 40.909 0.00 0.00 0.00 1.85
286 303 7.113437 TGAATTGAATATTGGTTCCGTTCCTA 58.887 34.615 0.00 0.00 0.00 2.94
305 322 2.408271 TGAGCCCTAGCACTGAATTG 57.592 50.000 0.00 0.00 43.56 2.32
317 334 0.987081 ATCAGGTGCAGATGAGCCCT 60.987 55.000 6.88 0.00 36.16 5.19
393 412 2.096565 CCTCGCGCACATAATCATCTTG 60.097 50.000 8.75 0.00 0.00 3.02
415 434 1.211818 GCCACGAAATTTTGCACGCA 61.212 50.000 5.27 0.00 0.00 5.24
419 438 3.319405 TCCTTTAGCCACGAAATTTTGCA 59.681 39.130 5.27 0.00 0.00 4.08
477 497 2.289547 TGAAAACTACGCTGTTTGGAGC 59.710 45.455 7.06 0.00 39.71 4.70
485 505 4.848757 AGAAGCTTTTGAAAACTACGCTG 58.151 39.130 0.00 0.00 0.00 5.18
488 508 5.806286 TGTGAGAAGCTTTTGAAAACTACG 58.194 37.500 0.00 0.00 0.00 3.51
491 511 6.212888 ACATGTGAGAAGCTTTTGAAAACT 57.787 33.333 0.00 0.00 0.00 2.66
516 536 6.145371 GCTCTCGGCAAAAACAATAATTTTCA 59.855 34.615 0.00 0.00 41.35 2.69
517 537 6.366061 AGCTCTCGGCAAAAACAATAATTTTC 59.634 34.615 0.00 0.00 44.79 2.29
527 547 0.442699 CGGTAGCTCTCGGCAAAAAC 59.557 55.000 0.00 0.00 44.79 2.43
545 565 1.290203 CGTGGAGGATGGACATTTCG 58.710 55.000 0.00 0.00 0.00 3.46
560 580 2.566010 CCGTGCCAAATTCCGTGG 59.434 61.111 0.00 0.00 39.33 4.94
561 581 2.126502 GCCGTGCCAAATTCCGTG 60.127 61.111 0.00 0.00 0.00 4.94
564 584 0.532115 ATGAAGCCGTGCCAAATTCC 59.468 50.000 0.00 0.00 0.00 3.01
598 618 9.672086 CGTGAGGAACAGTAAAATCATTAAAAA 57.328 29.630 0.00 0.00 0.00 1.94
654 797 9.151471 TGAAGTATATCAAGACTTTTCGGAAAG 57.849 33.333 14.86 14.86 46.17 2.62
661 804 8.950210 CACATGGTGAAGTATATCAAGACTTTT 58.050 33.333 0.00 0.00 37.29 2.27
758 912 5.106442 TGCAACTATAATCGAGCGAGAAAA 58.894 37.500 0.00 0.00 0.00 2.29
790 944 2.507324 GTCAACCTCTCGCTCGGC 60.507 66.667 0.00 0.00 0.00 5.54
832 986 4.521146 AGGAGTGATCAATTTACAGCAGG 58.479 43.478 0.00 0.00 0.00 4.85
986 1144 6.041069 CGGTTTAAATACAGAGGAGAGGAGAT 59.959 42.308 0.00 0.00 0.00 2.75
1000 1158 6.468956 CAGTTGACATCATGCGGTTTAAATAC 59.531 38.462 0.00 0.00 0.00 1.89
1062 1227 3.628008 TGCATTGCCATTTCTGATCTCT 58.372 40.909 6.12 0.00 0.00 3.10
1063 1228 3.630769 TCTGCATTGCCATTTCTGATCTC 59.369 43.478 6.12 0.00 0.00 2.75
1160 1344 3.194116 GGGTCTTTGTACCTGACATACGA 59.806 47.826 10.63 0.00 38.07 3.43
1366 1558 1.872234 ACACGCGATCGACCGATTG 60.872 57.895 21.57 13.70 38.66 2.67
1493 1708 3.071206 ATCTCCTGCCACGTCGCT 61.071 61.111 6.72 0.00 0.00 4.93
1706 1921 1.622607 CGAAGGTGTAGGGGATGCCA 61.623 60.000 5.30 0.00 0.00 4.92
1814 2058 4.551990 CGGATGCATGTGTTAATAACGGTC 60.552 45.833 2.46 0.00 0.00 4.79
1817 2061 3.848191 GCCGGATGCATGTGTTAATAACG 60.848 47.826 5.05 0.00 40.77 3.18
1818 2062 3.315191 AGCCGGATGCATGTGTTAATAAC 59.685 43.478 5.05 0.00 44.83 1.89
2085 2334 2.049156 TCGTGGAAGCTGAGCACG 60.049 61.111 7.39 8.05 40.17 5.34
2260 2509 4.454504 GTGGGATGGCAAATTATACGTAGG 59.545 45.833 0.08 0.00 0.00 3.18
2286 2541 9.569167 GTTTTTATATTTGTTTACAGAGGGAGC 57.431 33.333 0.00 0.00 0.00 4.70
2321 2576 7.436673 AGCGTTTAGATCACTACTTTCATGATC 59.563 37.037 0.00 5.50 46.04 2.92
2324 2579 6.754209 AGAGCGTTTAGATCACTACTTTCATG 59.246 38.462 0.00 0.00 37.82 3.07
2325 2580 6.868622 AGAGCGTTTAGATCACTACTTTCAT 58.131 36.000 0.00 0.00 37.82 2.57
2326 2581 6.268825 AGAGCGTTTAGATCACTACTTTCA 57.731 37.500 0.00 0.00 37.82 2.69
2333 2588 9.988815 ATGAAATATAAGAGCGTTTAGATCACT 57.011 29.630 0.00 0.00 37.82 3.41
2338 2593 9.188588 CCGTAATGAAATATAAGAGCGTTTAGA 57.811 33.333 0.00 0.00 0.00 2.10
2339 2594 9.188588 TCCGTAATGAAATATAAGAGCGTTTAG 57.811 33.333 0.00 0.00 0.00 1.85
2340 2595 8.971321 GTCCGTAATGAAATATAAGAGCGTTTA 58.029 33.333 0.00 0.00 0.00 2.01
2341 2596 7.306399 CGTCCGTAATGAAATATAAGAGCGTTT 60.306 37.037 0.00 0.00 0.00 3.60
2342 2597 6.143438 CGTCCGTAATGAAATATAAGAGCGTT 59.857 38.462 0.00 0.00 0.00 4.84
2343 2598 5.628193 CGTCCGTAATGAAATATAAGAGCGT 59.372 40.000 0.00 0.00 0.00 5.07
2344 2599 5.060569 CCGTCCGTAATGAAATATAAGAGCG 59.939 44.000 0.00 0.00 0.00 5.03
2345 2600 6.154445 TCCGTCCGTAATGAAATATAAGAGC 58.846 40.000 0.00 0.00 0.00 4.09
2346 2601 7.368833 ACTCCGTCCGTAATGAAATATAAGAG 58.631 38.462 0.00 0.00 0.00 2.85
2347 2602 7.281040 ACTCCGTCCGTAATGAAATATAAGA 57.719 36.000 0.00 0.00 0.00 2.10
2348 2603 8.295288 AGTACTCCGTCCGTAATGAAATATAAG 58.705 37.037 0.00 0.00 0.00 1.73
2349 2604 8.169977 AGTACTCCGTCCGTAATGAAATATAA 57.830 34.615 0.00 0.00 0.00 0.98
2350 2605 7.750229 AGTACTCCGTCCGTAATGAAATATA 57.250 36.000 0.00 0.00 0.00 0.86
2351 2606 6.645790 AGTACTCCGTCCGTAATGAAATAT 57.354 37.500 0.00 0.00 0.00 1.28
2352 2607 6.542005 TGTAGTACTCCGTCCGTAATGAAATA 59.458 38.462 0.00 0.00 0.00 1.40
2353 2608 4.996788 AGTACTCCGTCCGTAATGAAAT 57.003 40.909 0.00 0.00 0.00 2.17
2354 2609 4.699735 TGTAGTACTCCGTCCGTAATGAAA 59.300 41.667 0.00 0.00 0.00 2.69
2355 2610 4.260985 TGTAGTACTCCGTCCGTAATGAA 58.739 43.478 0.00 0.00 0.00 2.57
2356 2611 3.872696 TGTAGTACTCCGTCCGTAATGA 58.127 45.455 0.00 0.00 0.00 2.57
2357 2612 4.825546 ATGTAGTACTCCGTCCGTAATG 57.174 45.455 0.00 0.00 0.00 1.90
2358 2613 4.641989 ACAATGTAGTACTCCGTCCGTAAT 59.358 41.667 0.00 0.00 0.00 1.89
2359 2614 4.009675 ACAATGTAGTACTCCGTCCGTAA 58.990 43.478 0.00 0.00 0.00 3.18
2360 2615 3.609853 ACAATGTAGTACTCCGTCCGTA 58.390 45.455 0.00 0.00 0.00 4.02
2361 2616 2.421424 GACAATGTAGTACTCCGTCCGT 59.579 50.000 0.00 0.00 0.00 4.69
2362 2617 2.421073 TGACAATGTAGTACTCCGTCCG 59.579 50.000 0.00 0.00 0.00 4.79
2363 2618 4.650754 ATGACAATGTAGTACTCCGTCC 57.349 45.455 0.00 0.00 0.00 4.79
2364 2619 5.408356 ACAATGACAATGTAGTACTCCGTC 58.592 41.667 0.00 5.86 0.00 4.79
2365 2620 5.047590 TGACAATGACAATGTAGTACTCCGT 60.048 40.000 0.00 0.00 0.00 4.69
2366 2621 5.288712 GTGACAATGACAATGTAGTACTCCG 59.711 44.000 0.00 0.00 0.00 4.63
2390 2645 2.274437 CCATGTGAGTGATGGACGAAG 58.726 52.381 0.00 0.00 42.81 3.79
2407 2671 2.415090 GCTCGTACGTGTCAAGTACCAT 60.415 50.000 19.33 0.00 40.83 3.55
2410 2674 2.240040 CTGCTCGTACGTGTCAAGTAC 58.760 52.381 16.05 16.41 40.59 2.73
2411 2675 1.198408 CCTGCTCGTACGTGTCAAGTA 59.802 52.381 16.05 3.35 0.00 2.24
2414 2678 1.287815 CCCTGCTCGTACGTGTCAA 59.712 57.895 16.05 2.60 0.00 3.18
2416 2680 0.319297 AAACCCTGCTCGTACGTGTC 60.319 55.000 16.05 9.60 0.00 3.67
2417 2681 0.105408 AAAACCCTGCTCGTACGTGT 59.895 50.000 16.05 1.73 0.00 4.49
2418 2682 0.511221 CAAAACCCTGCTCGTACGTG 59.489 55.000 16.05 14.31 0.00 4.49
2426 2707 1.238439 CGTGATCACAAAACCCTGCT 58.762 50.000 24.93 0.00 0.00 4.24
2943 3224 1.001597 GAGGACGCGATCGAGGTAATT 60.002 52.381 21.57 0.00 39.41 1.40
2944 3225 0.592148 GAGGACGCGATCGAGGTAAT 59.408 55.000 21.57 7.52 39.41 1.89
2952 3233 2.034053 AGAGAAAGATGAGGACGCGATC 59.966 50.000 15.93 8.56 0.00 3.69
2958 3239 5.593909 TGATGAGAGAGAGAAAGATGAGGAC 59.406 44.000 0.00 0.00 0.00 3.85
2972 3253 0.526524 GCGGTCGGTTGATGAGAGAG 60.527 60.000 0.00 0.00 0.00 3.20
2975 3256 1.511305 GAGCGGTCGGTTGATGAGA 59.489 57.895 0.00 0.00 0.00 3.27
2977 3258 1.541310 AAGGAGCGGTCGGTTGATGA 61.541 55.000 8.77 0.00 0.00 2.92
2982 3263 2.657237 CAGAAGGAGCGGTCGGTT 59.343 61.111 8.77 4.48 0.00 4.44
2983 3264 4.070552 GCAGAAGGAGCGGTCGGT 62.071 66.667 8.77 0.00 0.00 4.69
2984 3265 3.302347 AAGCAGAAGGAGCGGTCGG 62.302 63.158 8.77 0.00 37.01 4.79
2996 3292 1.684450 TCAACACGTACTCCAAGCAGA 59.316 47.619 0.00 0.00 0.00 4.26
2999 3295 1.128692 GCATCAACACGTACTCCAAGC 59.871 52.381 0.00 0.00 0.00 4.01
3001 3297 2.831685 AGCATCAACACGTACTCCAA 57.168 45.000 0.00 0.00 0.00 3.53
3002 3298 2.831685 AAGCATCAACACGTACTCCA 57.168 45.000 0.00 0.00 0.00 3.86
3003 3299 4.982916 CCTATAAGCATCAACACGTACTCC 59.017 45.833 0.00 0.00 0.00 3.85
3004 3300 5.828747 TCCTATAAGCATCAACACGTACTC 58.171 41.667 0.00 0.00 0.00 2.59
3005 3301 5.360144 ACTCCTATAAGCATCAACACGTACT 59.640 40.000 0.00 0.00 0.00 2.73
3010 3306 9.712305 AACATATACTCCTATAAGCATCAACAC 57.288 33.333 0.00 0.00 0.00 3.32
3053 3602 3.181484 TGCCTGCATCGTAACGTACTTAT 60.181 43.478 0.00 0.00 0.00 1.73
3055 3604 1.067425 TGCCTGCATCGTAACGTACTT 60.067 47.619 0.00 0.00 0.00 2.24
3056 3605 0.528924 TGCCTGCATCGTAACGTACT 59.471 50.000 0.00 0.00 0.00 2.73
3410 3962 1.596934 GTCCCCGAAGAGCACATCA 59.403 57.895 0.00 0.00 0.00 3.07
3413 3965 2.525629 TGGTCCCCGAAGAGCACA 60.526 61.111 2.89 0.00 39.25 4.57
3453 4005 2.603776 GGACCTGACCCACGTCCT 60.604 66.667 7.55 0.00 42.39 3.85
3664 4220 2.544694 CGATCGATTTCTCACTCAGGGG 60.545 54.545 10.26 0.00 0.00 4.79
3701 4257 4.211389 CGTATATGCGATCAAAACCTTGC 58.789 43.478 7.50 0.00 32.14 4.01
3725 4281 1.880796 CGAACTCACACACACGGCA 60.881 57.895 0.00 0.00 0.00 5.69
3751 4307 6.323996 AGAACCTATATCAAGTTCATCGGACA 59.676 38.462 12.40 0.00 41.86 4.02
3756 4312 9.469807 CACTACAGAACCTATATCAAGTTCATC 57.530 37.037 12.40 0.00 41.86 2.92
3764 4320 5.838521 TGGCATCACTACAGAACCTATATCA 59.161 40.000 0.00 0.00 0.00 2.15
3765 4321 6.346477 TGGCATCACTACAGAACCTATATC 57.654 41.667 0.00 0.00 0.00 1.63
3766 4322 6.747414 TTGGCATCACTACAGAACCTATAT 57.253 37.500 0.00 0.00 0.00 0.86
3767 4323 6.553953 TTTGGCATCACTACAGAACCTATA 57.446 37.500 0.00 0.00 0.00 1.31
3768 4324 5.435686 TTTGGCATCACTACAGAACCTAT 57.564 39.130 0.00 0.00 0.00 2.57
3769 4325 4.901197 TTTGGCATCACTACAGAACCTA 57.099 40.909 0.00 0.00 0.00 3.08
3770 4326 3.788227 TTTGGCATCACTACAGAACCT 57.212 42.857 0.00 0.00 0.00 3.50
3771 4327 5.391312 AATTTTGGCATCACTACAGAACC 57.609 39.130 0.00 0.00 0.00 3.62
3772 4328 6.922957 TGAAAATTTTGGCATCACTACAGAAC 59.077 34.615 8.47 0.00 0.00 3.01
3773 4329 7.048629 TGAAAATTTTGGCATCACTACAGAA 57.951 32.000 8.47 0.00 0.00 3.02
3774 4330 6.294675 CCTGAAAATTTTGGCATCACTACAGA 60.295 38.462 8.47 0.00 0.00 3.41
3775 4331 5.865552 CCTGAAAATTTTGGCATCACTACAG 59.134 40.000 8.47 5.22 0.00 2.74
3776 4332 5.538053 TCCTGAAAATTTTGGCATCACTACA 59.462 36.000 8.47 0.00 0.00 2.74
3777 4333 6.024552 TCCTGAAAATTTTGGCATCACTAC 57.975 37.500 8.47 0.00 0.00 2.73
3778 4334 6.351202 CCATCCTGAAAATTTTGGCATCACTA 60.351 38.462 8.47 0.00 0.00 2.74
3779 4335 5.484715 CATCCTGAAAATTTTGGCATCACT 58.515 37.500 8.47 0.00 0.00 3.41
3780 4336 4.632688 CCATCCTGAAAATTTTGGCATCAC 59.367 41.667 8.47 0.00 0.00 3.06
3781 4337 4.323638 CCCATCCTGAAAATTTTGGCATCA 60.324 41.667 8.47 0.00 0.00 3.07
3782 4338 4.080975 TCCCATCCTGAAAATTTTGGCATC 60.081 41.667 8.47 0.00 0.00 3.91
3783 4339 3.845398 TCCCATCCTGAAAATTTTGGCAT 59.155 39.130 8.47 0.00 0.00 4.40
3784 4340 3.246301 TCCCATCCTGAAAATTTTGGCA 58.754 40.909 8.47 0.01 0.00 4.92
3785 4341 3.261643 ACTCCCATCCTGAAAATTTTGGC 59.738 43.478 8.47 0.00 0.00 4.52
3786 4342 4.322953 CCACTCCCATCCTGAAAATTTTGG 60.323 45.833 8.47 4.53 0.00 3.28
3787 4343 4.322953 CCCACTCCCATCCTGAAAATTTTG 60.323 45.833 8.47 0.00 0.00 2.44
3788 4344 3.840078 CCCACTCCCATCCTGAAAATTTT 59.160 43.478 2.28 2.28 0.00 1.82
3789 4345 3.444029 CCCACTCCCATCCTGAAAATTT 58.556 45.455 0.00 0.00 0.00 1.82
3790 4346 2.889756 GCCCACTCCCATCCTGAAAATT 60.890 50.000 0.00 0.00 0.00 1.82
3791 4347 1.342374 GCCCACTCCCATCCTGAAAAT 60.342 52.381 0.00 0.00 0.00 1.82
3792 4348 0.039618 GCCCACTCCCATCCTGAAAA 59.960 55.000 0.00 0.00 0.00 2.29
3793 4349 1.691219 GCCCACTCCCATCCTGAAA 59.309 57.895 0.00 0.00 0.00 2.69
3794 4350 2.308722 GGCCCACTCCCATCCTGAA 61.309 63.158 0.00 0.00 0.00 3.02
3795 4351 2.692368 GGCCCACTCCCATCCTGA 60.692 66.667 0.00 0.00 0.00 3.86
3796 4352 4.181010 CGGCCCACTCCCATCCTG 62.181 72.222 0.00 0.00 0.00 3.86
3797 4353 4.414956 TCGGCCCACTCCCATCCT 62.415 66.667 0.00 0.00 0.00 3.24
3798 4354 4.176752 GTCGGCCCACTCCCATCC 62.177 72.222 0.00 0.00 0.00 3.51
3799 4355 4.176752 GGTCGGCCCACTCCCATC 62.177 72.222 0.00 0.00 0.00 3.51
3807 4363 4.386951 CATGTCGTGGTCGGCCCA 62.387 66.667 2.12 0.00 41.33 5.36
3808 4364 4.077184 TCATGTCGTGGTCGGCCC 62.077 66.667 2.12 0.00 41.33 5.80
3809 4365 2.813908 GTCATGTCGTGGTCGGCC 60.814 66.667 0.00 0.00 41.33 6.13
3810 4366 2.813908 GGTCATGTCGTGGTCGGC 60.814 66.667 0.00 0.00 42.45 5.54
3811 4367 2.125673 GGGTCATGTCGTGGTCGG 60.126 66.667 0.00 0.00 37.69 4.79
3812 4368 1.446099 CAGGGTCATGTCGTGGTCG 60.446 63.158 0.00 0.00 38.55 4.79
3813 4369 0.670546 CACAGGGTCATGTCGTGGTC 60.671 60.000 13.03 0.00 0.00 4.02
3814 4370 1.371183 CACAGGGTCATGTCGTGGT 59.629 57.895 13.03 0.00 0.00 4.16
3815 4371 1.375908 CCACAGGGTCATGTCGTGG 60.376 63.158 13.03 10.20 41.06 4.94
3816 4372 1.375908 CCCACAGGGTCATGTCGTG 60.376 63.158 0.00 1.55 38.25 4.35
3817 4373 3.068881 CCCACAGGGTCATGTCGT 58.931 61.111 0.00 0.00 38.25 4.34
3818 4374 2.436646 GCCCACAGGGTCATGTCG 60.437 66.667 3.68 0.00 46.51 4.35
3819 4375 0.749454 GATGCCCACAGGGTCATGTC 60.749 60.000 14.03 2.16 46.51 3.06
3820 4376 1.304282 GATGCCCACAGGGTCATGT 59.696 57.895 14.03 0.00 46.51 3.21
3821 4377 0.323633 TTGATGCCCACAGGGTCATG 60.324 55.000 14.03 0.00 46.51 3.07
3822 4378 0.033796 CTTGATGCCCACAGGGTCAT 60.034 55.000 10.43 10.43 46.51 3.06
3823 4379 1.379916 CTTGATGCCCACAGGGTCA 59.620 57.895 3.68 3.01 46.51 4.02
3824 4380 1.379044 CCTTGATGCCCACAGGGTC 60.379 63.158 3.68 0.00 46.51 4.46
3825 4381 2.765969 CCTTGATGCCCACAGGGT 59.234 61.111 3.68 0.00 46.51 4.34
3827 4383 2.757099 GGCCTTGATGCCCACAGG 60.757 66.667 0.00 0.00 46.11 4.00
3834 4390 0.529378 CTCCAAAGTGGCCTTGATGC 59.471 55.000 3.32 0.00 37.47 3.91
3835 4391 1.180029 CCTCCAAAGTGGCCTTGATG 58.820 55.000 3.32 0.00 37.47 3.07
3836 4392 0.613012 GCCTCCAAAGTGGCCTTGAT 60.613 55.000 3.32 0.00 45.20 2.57
3837 4393 1.228552 GCCTCCAAAGTGGCCTTGA 60.229 57.895 3.32 0.00 45.20 3.02
3838 4394 3.369921 GCCTCCAAAGTGGCCTTG 58.630 61.111 3.32 0.00 45.20 3.61
3843 4399 1.683365 CCCATGGCCTCCAAAGTGG 60.683 63.158 6.09 0.82 36.95 4.00
3844 4400 2.353610 GCCCATGGCCTCCAAAGTG 61.354 63.158 6.09 0.00 44.06 3.16
3845 4401 2.037847 GCCCATGGCCTCCAAAGT 59.962 61.111 6.09 0.00 44.06 2.66
3860 4416 1.253100 TTTCTTGAAATGGGTCGGCC 58.747 50.000 0.00 0.00 0.00 6.13
3861 4417 2.296190 ACTTTTCTTGAAATGGGTCGGC 59.704 45.455 11.75 0.00 0.00 5.54
3862 4418 3.568007 TGACTTTTCTTGAAATGGGTCGG 59.432 43.478 11.75 0.00 0.00 4.79
3863 4419 4.275936 ACTGACTTTTCTTGAAATGGGTCG 59.724 41.667 11.75 10.90 0.00 4.79
3864 4420 5.507985 CCACTGACTTTTCTTGAAATGGGTC 60.508 44.000 11.75 12.25 0.00 4.46
3865 4421 4.342092 CCACTGACTTTTCTTGAAATGGGT 59.658 41.667 11.75 5.67 0.00 4.51
3866 4422 4.797275 GCCACTGACTTTTCTTGAAATGGG 60.797 45.833 11.75 5.80 0.00 4.00
3867 4423 4.301628 GCCACTGACTTTTCTTGAAATGG 58.698 43.478 11.75 9.24 0.00 3.16
3868 4424 4.038402 AGGCCACTGACTTTTCTTGAAATG 59.962 41.667 5.01 7.24 0.00 2.32
3869 4425 4.218312 AGGCCACTGACTTTTCTTGAAAT 58.782 39.130 5.01 0.00 0.00 2.17
3870 4426 3.631250 AGGCCACTGACTTTTCTTGAAA 58.369 40.909 5.01 0.00 0.00 2.69
3871 4427 3.214328 GAGGCCACTGACTTTTCTTGAA 58.786 45.455 5.01 0.00 0.00 2.69
3872 4428 2.172505 TGAGGCCACTGACTTTTCTTGA 59.827 45.455 5.01 0.00 0.00 3.02
3873 4429 2.291741 GTGAGGCCACTGACTTTTCTTG 59.708 50.000 5.01 0.00 40.10 3.02
3874 4430 2.576615 GTGAGGCCACTGACTTTTCTT 58.423 47.619 5.01 0.00 40.10 2.52
3875 4431 2.262423 GTGAGGCCACTGACTTTTCT 57.738 50.000 5.01 0.00 40.10 2.52
3889 4445 3.142393 CCCATCGGGCTAGTGAGG 58.858 66.667 0.00 0.00 35.35 3.86
3900 4456 4.626081 GACCCGGGATGCCCATCG 62.626 72.222 32.02 0.00 45.83 3.84
3901 4457 3.055470 TTGACCCGGGATGCCCATC 62.055 63.158 32.02 13.37 45.83 3.51
3902 4458 3.020647 TTGACCCGGGATGCCCAT 61.021 61.111 32.02 0.82 45.83 4.00
3903 4459 4.041762 GTTGACCCGGGATGCCCA 62.042 66.667 32.02 13.59 45.83 5.36
3904 4460 4.815108 GGTTGACCCGGGATGCCC 62.815 72.222 32.02 17.69 41.09 5.36
3918 4474 6.540083 AGTACATAAAGCTACAACTTGGGTT 58.460 36.000 0.00 0.00 35.86 4.11
3919 4475 6.123045 AGTACATAAAGCTACAACTTGGGT 57.877 37.500 0.00 0.00 0.00 4.51
3920 4476 7.448748 AAAGTACATAAAGCTACAACTTGGG 57.551 36.000 0.00 0.00 0.00 4.12
3943 4499 1.777941 AAGTAACCACGGCCCAAAAA 58.222 45.000 0.00 0.00 0.00 1.94
3944 4500 2.506444 CTAAGTAACCACGGCCCAAAA 58.494 47.619 0.00 0.00 0.00 2.44
3945 4501 1.271488 CCTAAGTAACCACGGCCCAAA 60.271 52.381 0.00 0.00 0.00 3.28
3946 4502 0.325602 CCTAAGTAACCACGGCCCAA 59.674 55.000 0.00 0.00 0.00 4.12
3947 4503 1.984817 CCTAAGTAACCACGGCCCA 59.015 57.895 0.00 0.00 0.00 5.36
3948 4504 1.450848 GCCTAAGTAACCACGGCCC 60.451 63.158 0.00 0.00 34.75 5.80
3949 4505 4.213666 GCCTAAGTAACCACGGCC 57.786 61.111 0.00 0.00 34.75 6.13
3950 4506 0.321830 TTGGCCTAAGTAACCACGGC 60.322 55.000 3.32 0.00 39.98 5.68
3951 4507 1.002773 AGTTGGCCTAAGTAACCACGG 59.997 52.381 3.32 0.00 31.83 4.94
3952 4508 2.344025 GAGTTGGCCTAAGTAACCACG 58.656 52.381 3.32 0.00 31.83 4.94
3953 4509 2.039348 TGGAGTTGGCCTAAGTAACCAC 59.961 50.000 3.32 0.00 31.83 4.16
3954 4510 2.304761 CTGGAGTTGGCCTAAGTAACCA 59.695 50.000 3.32 3.95 0.00 3.67
3955 4511 2.940083 GCTGGAGTTGGCCTAAGTAACC 60.940 54.545 3.32 0.00 0.00 2.85
3956 4512 2.290071 TGCTGGAGTTGGCCTAAGTAAC 60.290 50.000 3.32 0.00 0.00 2.50
3957 4513 1.982226 TGCTGGAGTTGGCCTAAGTAA 59.018 47.619 3.32 0.00 0.00 2.24
3958 4514 1.278127 GTGCTGGAGTTGGCCTAAGTA 59.722 52.381 3.32 0.00 0.00 2.24
3959 4515 0.036875 GTGCTGGAGTTGGCCTAAGT 59.963 55.000 3.32 0.00 0.00 2.24
3977 4533 1.302192 CATCCGTTTGGGGTCGTGT 60.302 57.895 0.00 0.00 36.01 4.49
3994 4550 3.320541 ACAGAATTCGGGCAAAATGAACA 59.679 39.130 10.43 0.00 0.00 3.18
4009 4565 2.290705 CCCTACCCAAACGGACAGAATT 60.291 50.000 0.00 0.00 34.64 2.17
4095 4651 0.033208 GGACATGATGGGGCCAAAGA 60.033 55.000 4.39 0.00 0.00 2.52
4155 4713 2.573369 TGGGCGTGCAAACTAGTTTTA 58.427 42.857 18.25 7.93 0.00 1.52
4282 4843 3.278574 TGGCAACCAATAGATGTACTGC 58.721 45.455 0.00 0.00 0.00 4.40
4442 5003 7.282224 CAGGATGTTCGACCAAGGATTTAATTA 59.718 37.037 0.00 0.00 0.00 1.40
4446 5007 4.513442 CAGGATGTTCGACCAAGGATTTA 58.487 43.478 0.00 0.00 0.00 1.40
4462 5023 0.389391 ACGAGCGGGATAACAGGATG 59.611 55.000 0.00 0.00 46.00 3.51
4500 5061 3.130280 TGACTGCTTGTGTGATCATGT 57.870 42.857 0.00 0.00 0.00 3.21
4525 5086 3.372458 GGGATGAAGGGAAGCTTTGAGAT 60.372 47.826 0.00 0.00 0.00 2.75
4528 5089 1.710244 TGGGATGAAGGGAAGCTTTGA 59.290 47.619 0.00 0.00 0.00 2.69
4559 5121 0.975135 TGGGGTATCGTTCGAAACCA 59.025 50.000 16.50 6.96 33.46 3.67
4581 5143 2.036346 GCTTTTGGTGTGCTTCAATCCT 59.964 45.455 0.00 0.00 0.00 3.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.