Multiple sequence alignment - TraesCS2D01G562100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G562100 chr2D 100.000 2453 0 0 1 2453 634150282 634147830 0.000000e+00 4530
1 TraesCS2D01G562100 chr2D 94.324 1057 38 10 693 1727 634155298 634154242 0.000000e+00 1600
2 TraesCS2D01G562100 chr2D 98.039 357 7 0 447 803 634155439 634155083 2.680000e-174 621
3 TraesCS2D01G562100 chr2D 85.561 187 15 5 1729 1903 634153951 634153765 4.170000e-43 185
4 TraesCS2D01G562100 chr2D 79.630 216 22 10 693 886 634149695 634149480 4.250000e-28 135
5 TraesCS2D01G562100 chr2A 93.888 1309 61 2 419 1727 779509533 779510822 0.000000e+00 1956
6 TraesCS2D01G562100 chr2A 93.053 1310 66 12 419 1727 779621227 779622512 0.000000e+00 1892
7 TraesCS2D01G562100 chr2A 90.896 1406 73 11 327 1728 779529025 779530379 0.000000e+00 1836
8 TraesCS2D01G562100 chr2A 92.878 1011 45 7 717 1727 779341366 779342349 0.000000e+00 1443
9 TraesCS2D01G562100 chr2A 90.216 1063 76 15 693 1728 779432560 779433621 0.000000e+00 1362
10 TraesCS2D01G562100 chr2A 96.259 401 14 1 2054 2453 779623048 779623448 0.000000e+00 656
11 TraesCS2D01G562100 chr2A 91.195 477 29 1 327 803 779432312 779432775 9.570000e-179 636
12 TraesCS2D01G562100 chr2A 96.169 261 9 1 2194 2453 779350982 779351242 2.250000e-115 425
13 TraesCS2D01G562100 chr2A 95.402 261 11 1 2194 2453 779514406 779514666 4.880000e-112 414
14 TraesCS2D01G562100 chr2A 95.045 222 11 0 1730 1951 779511108 779511329 1.400000e-92 350
15 TraesCS2D01G562100 chr2A 94.595 222 12 0 1730 1951 779622795 779623016 6.490000e-91 344
16 TraesCS2D01G562100 chr2A 93.694 222 14 0 1730 1951 779342635 779342856 1.410000e-87 333
17 TraesCS2D01G562100 chr2A 87.889 289 28 2 1727 2009 779530660 779530947 1.410000e-87 333
18 TraesCS2D01G562100 chr2A 87.500 288 29 2 1728 2009 779433903 779434189 2.350000e-85 326
19 TraesCS2D01G562100 chr2A 95.172 145 7 0 2054 2198 779511361 779511505 1.900000e-56 230
20 TraesCS2D01G562100 chr2A 93.793 145 9 0 2054 2198 779342888 779343032 4.110000e-53 219
21 TraesCS2D01G562100 chr2A 95.604 91 4 0 419 509 779341175 779341265 1.970000e-31 147
22 TraesCS2D01G562100 chr2A 96.296 81 3 0 723 803 779341455 779341535 1.530000e-27 134
23 TraesCS2D01G562100 chr2A 96.296 81 3 0 723 803 779509920 779510000 1.530000e-27 134
24 TraesCS2D01G562100 chr2A 96.296 81 3 0 723 803 779621615 779621695 1.530000e-27 134
25 TraesCS2D01G562100 chr2B 90.473 1312 62 26 456 1727 777144238 777142950 0.000000e+00 1672
26 TraesCS2D01G562100 chr2B 92.771 83 5 1 588 670 777143887 777143806 4.280000e-23 119
27 TraesCS2D01G562100 chr2B 86.916 107 6 3 332 431 777144300 777144195 1.990000e-21 113
28 TraesCS2D01G562100 chr6B 94.817 328 16 1 1 327 57330881 57330554 6.050000e-141 510
29 TraesCS2D01G562100 chr5A 92.923 325 23 0 1 325 9602286 9601962 7.940000e-130 473
30 TraesCS2D01G562100 chr3B 92.661 327 24 0 1 327 697575625 697575299 2.860000e-129 472
31 TraesCS2D01G562100 chr7A 92.615 325 23 1 1 325 719323644 719323321 1.330000e-127 466


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G562100 chr2D 634147830 634150282 2452 True 2332.500000 4530 89.815000 1 2453 2 chr2D.!!$R1 2452
1 TraesCS2D01G562100 chr2D 634153765 634155439 1674 True 802.000000 1600 92.641333 447 1903 3 chr2D.!!$R2 1456
2 TraesCS2D01G562100 chr2A 779529025 779530947 1922 False 1084.500000 1836 89.392500 327 2009 2 chr2A.!!$F5 1682
3 TraesCS2D01G562100 chr2A 779432312 779434189 1877 False 774.666667 1362 89.637000 327 2009 3 chr2A.!!$F3 1682
4 TraesCS2D01G562100 chr2A 779621227 779623448 2221 False 756.500000 1892 95.050750 419 2453 4 chr2A.!!$F6 2034
5 TraesCS2D01G562100 chr2A 779509533 779514666 5133 False 616.800000 1956 95.160600 419 2453 5 chr2A.!!$F4 2034
6 TraesCS2D01G562100 chr2A 779341175 779343032 1857 False 455.200000 1443 94.453000 419 2198 5 chr2A.!!$F2 1779
7 TraesCS2D01G562100 chr2B 777142950 777144300 1350 True 634.666667 1672 90.053333 332 1727 3 chr2B.!!$R1 1395

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
234 235 0.032515 TCCCCGCCAGAAGTATCTCA 60.033 55.0 0.0 0.0 32.03 3.27 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2044 2459 0.176219 AAACCATGCCGCCATTCATG 59.824 50.0 0.0 0.0 39.67 3.07 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 7.470935 TTTTCCTTTTGGGTAGTATTTAGCC 57.529 36.000 0.00 0.00 40.87 3.93
42 43 6.397217 TTCCTTTTGGGTAGTATTTAGCCT 57.603 37.500 4.31 0.00 40.87 4.58
43 44 6.397217 TCCTTTTGGGTAGTATTTAGCCTT 57.603 37.500 4.31 0.00 40.87 4.35
44 45 6.420638 TCCTTTTGGGTAGTATTTAGCCTTC 58.579 40.000 4.31 0.00 40.87 3.46
45 46 6.012333 TCCTTTTGGGTAGTATTTAGCCTTCA 60.012 38.462 4.31 0.00 40.87 3.02
46 47 6.661805 CCTTTTGGGTAGTATTTAGCCTTCAA 59.338 38.462 4.31 0.00 36.16 2.69
47 48 7.362660 CCTTTTGGGTAGTATTTAGCCTTCAAC 60.363 40.741 4.31 0.00 36.16 3.18
48 49 5.765576 TGGGTAGTATTTAGCCTTCAACA 57.234 39.130 4.31 0.00 36.16 3.33
49 50 5.493809 TGGGTAGTATTTAGCCTTCAACAC 58.506 41.667 4.31 0.00 36.16 3.32
50 51 5.249852 TGGGTAGTATTTAGCCTTCAACACT 59.750 40.000 4.31 0.00 36.16 3.55
51 52 5.816258 GGGTAGTATTTAGCCTTCAACACTC 59.184 44.000 0.00 0.00 32.66 3.51
52 53 6.351966 GGGTAGTATTTAGCCTTCAACACTCT 60.352 42.308 0.00 0.00 32.66 3.24
53 54 6.535508 GGTAGTATTTAGCCTTCAACACTCTG 59.464 42.308 0.00 0.00 0.00 3.35
54 55 5.491982 AGTATTTAGCCTTCAACACTCTGG 58.508 41.667 0.00 0.00 0.00 3.86
55 56 2.185004 TTAGCCTTCAACACTCTGGC 57.815 50.000 0.00 0.00 43.52 4.85
56 57 1.055849 TAGCCTTCAACACTCTGGCA 58.944 50.000 0.00 0.00 45.42 4.92
57 58 0.536006 AGCCTTCAACACTCTGGCAC 60.536 55.000 0.00 0.00 45.42 5.01
58 59 0.819259 GCCTTCAACACTCTGGCACA 60.819 55.000 0.00 0.00 42.79 4.57
59 60 1.901591 CCTTCAACACTCTGGCACAT 58.098 50.000 0.00 0.00 38.20 3.21
60 61 2.875672 GCCTTCAACACTCTGGCACATA 60.876 50.000 0.00 0.00 42.79 2.29
61 62 3.411446 CCTTCAACACTCTGGCACATAA 58.589 45.455 0.00 0.00 38.20 1.90
62 63 3.438087 CCTTCAACACTCTGGCACATAAG 59.562 47.826 0.00 0.00 38.20 1.73
63 64 2.426522 TCAACACTCTGGCACATAAGC 58.573 47.619 0.00 0.00 38.20 3.09
64 65 2.038952 TCAACACTCTGGCACATAAGCT 59.961 45.455 0.00 0.00 38.20 3.74
65 66 3.260632 TCAACACTCTGGCACATAAGCTA 59.739 43.478 0.00 0.00 38.20 3.32
66 67 4.080919 TCAACACTCTGGCACATAAGCTAT 60.081 41.667 0.00 0.00 38.20 2.97
67 68 4.494091 ACACTCTGGCACATAAGCTATT 57.506 40.909 0.00 0.00 38.20 1.73
68 69 4.446371 ACACTCTGGCACATAAGCTATTC 58.554 43.478 0.00 0.00 38.20 1.75
69 70 3.492383 CACTCTGGCACATAAGCTATTCG 59.508 47.826 0.00 0.00 38.20 3.34
70 71 3.062763 CTCTGGCACATAAGCTATTCGG 58.937 50.000 0.00 0.00 38.20 4.30
71 72 2.434336 TCTGGCACATAAGCTATTCGGT 59.566 45.455 0.00 0.00 38.20 4.69
72 73 2.802816 CTGGCACATAAGCTATTCGGTC 59.197 50.000 0.00 0.00 38.20 4.79
73 74 2.434336 TGGCACATAAGCTATTCGGTCT 59.566 45.455 0.00 0.00 34.17 3.85
74 75 3.118408 TGGCACATAAGCTATTCGGTCTT 60.118 43.478 0.00 0.00 34.17 3.01
75 76 3.877508 GGCACATAAGCTATTCGGTCTTT 59.122 43.478 0.00 0.00 34.17 2.52
76 77 4.260784 GGCACATAAGCTATTCGGTCTTTG 60.261 45.833 0.00 0.00 34.17 2.77
77 78 4.570772 GCACATAAGCTATTCGGTCTTTGA 59.429 41.667 0.00 0.00 0.00 2.69
78 79 5.064707 GCACATAAGCTATTCGGTCTTTGAA 59.935 40.000 0.00 0.00 0.00 2.69
79 80 6.478588 CACATAAGCTATTCGGTCTTTGAAC 58.521 40.000 0.00 0.00 0.00 3.18
80 81 5.291128 ACATAAGCTATTCGGTCTTTGAACG 59.709 40.000 0.00 0.00 44.86 3.95
87 88 1.699343 CGGTCTTTGAACGAGTCTCC 58.301 55.000 0.00 0.00 46.60 3.71
88 89 1.000607 CGGTCTTTGAACGAGTCTCCA 60.001 52.381 0.00 0.00 46.60 3.86
89 90 2.352814 CGGTCTTTGAACGAGTCTCCAT 60.353 50.000 0.00 0.00 46.60 3.41
90 91 2.996621 GGTCTTTGAACGAGTCTCCATG 59.003 50.000 0.00 0.00 0.00 3.66
91 92 2.413453 GTCTTTGAACGAGTCTCCATGC 59.587 50.000 0.00 0.00 0.00 4.06
92 93 2.300152 TCTTTGAACGAGTCTCCATGCT 59.700 45.455 0.00 0.00 0.00 3.79
93 94 2.839486 TTGAACGAGTCTCCATGCTT 57.161 45.000 0.00 0.00 0.00 3.91
94 95 2.084610 TGAACGAGTCTCCATGCTTG 57.915 50.000 0.00 0.00 0.00 4.01
95 96 1.338105 TGAACGAGTCTCCATGCTTGG 60.338 52.381 12.41 12.41 45.15 3.61
96 97 0.687354 AACGAGTCTCCATGCTTGGT 59.313 50.000 17.54 0.00 44.06 3.67
97 98 0.687354 ACGAGTCTCCATGCTTGGTT 59.313 50.000 17.54 3.47 44.06 3.67
98 99 1.899814 ACGAGTCTCCATGCTTGGTTA 59.100 47.619 17.54 5.23 44.06 2.85
99 100 2.093973 ACGAGTCTCCATGCTTGGTTAG 60.094 50.000 17.54 9.37 44.06 2.34
124 125 6.900568 AAGAAGAGCTTGATTGAAGATACG 57.099 37.500 0.00 0.00 34.93 3.06
125 126 4.808364 AGAAGAGCTTGATTGAAGATACGC 59.192 41.667 0.00 0.00 32.82 4.42
126 127 4.128925 AGAGCTTGATTGAAGATACGCA 57.871 40.909 0.00 0.00 32.82 5.24
127 128 4.701765 AGAGCTTGATTGAAGATACGCAT 58.298 39.130 0.00 0.00 32.82 4.73
128 129 5.847304 AGAGCTTGATTGAAGATACGCATA 58.153 37.500 0.00 0.00 32.82 3.14
129 130 6.462500 AGAGCTTGATTGAAGATACGCATAT 58.538 36.000 0.00 0.00 32.82 1.78
130 131 6.589523 AGAGCTTGATTGAAGATACGCATATC 59.410 38.462 0.00 0.00 38.00 1.63
131 132 6.226052 AGCTTGATTGAAGATACGCATATCA 58.774 36.000 2.20 0.00 39.91 2.15
132 133 6.146837 AGCTTGATTGAAGATACGCATATCAC 59.853 38.462 2.20 0.00 39.91 3.06
133 134 6.452244 TTGATTGAAGATACGCATATCACG 57.548 37.500 2.20 0.00 39.91 4.35
134 135 5.768317 TGATTGAAGATACGCATATCACGA 58.232 37.500 2.20 0.00 39.91 4.35
135 136 6.212955 TGATTGAAGATACGCATATCACGAA 58.787 36.000 2.20 0.00 39.91 3.85
136 137 6.699642 TGATTGAAGATACGCATATCACGAAA 59.300 34.615 2.20 0.00 39.91 3.46
137 138 6.510746 TTGAAGATACGCATATCACGAAAG 57.489 37.500 2.20 0.00 39.91 2.62
138 139 4.444388 TGAAGATACGCATATCACGAAAGC 59.556 41.667 2.20 0.00 39.91 3.51
139 140 3.318017 AGATACGCATATCACGAAAGCC 58.682 45.455 2.20 0.00 39.91 4.35
140 141 1.860676 TACGCATATCACGAAAGCCC 58.139 50.000 1.84 0.00 0.00 5.19
141 142 0.107897 ACGCATATCACGAAAGCCCA 60.108 50.000 1.84 0.00 0.00 5.36
142 143 0.583438 CGCATATCACGAAAGCCCAG 59.417 55.000 0.00 0.00 0.00 4.45
143 144 1.806247 CGCATATCACGAAAGCCCAGA 60.806 52.381 0.00 0.00 0.00 3.86
144 145 1.599542 GCATATCACGAAAGCCCAGAC 59.400 52.381 0.00 0.00 0.00 3.51
145 146 2.213499 CATATCACGAAAGCCCAGACC 58.787 52.381 0.00 0.00 0.00 3.85
146 147 1.271856 TATCACGAAAGCCCAGACCA 58.728 50.000 0.00 0.00 0.00 4.02
147 148 0.321653 ATCACGAAAGCCCAGACCAC 60.322 55.000 0.00 0.00 0.00 4.16
148 149 1.966451 CACGAAAGCCCAGACCACC 60.966 63.158 0.00 0.00 0.00 4.61
149 150 2.359975 CGAAAGCCCAGACCACCC 60.360 66.667 0.00 0.00 0.00 4.61
150 151 2.895424 CGAAAGCCCAGACCACCCT 61.895 63.158 0.00 0.00 0.00 4.34
151 152 1.002011 GAAAGCCCAGACCACCCTC 60.002 63.158 0.00 0.00 0.00 4.30
152 153 1.774217 AAAGCCCAGACCACCCTCA 60.774 57.895 0.00 0.00 0.00 3.86
153 154 2.069165 AAAGCCCAGACCACCCTCAC 62.069 60.000 0.00 0.00 0.00 3.51
154 155 3.249189 GCCCAGACCACCCTCACA 61.249 66.667 0.00 0.00 0.00 3.58
155 156 2.606587 GCCCAGACCACCCTCACAT 61.607 63.158 0.00 0.00 0.00 3.21
156 157 2.078452 CCCAGACCACCCTCACATT 58.922 57.895 0.00 0.00 0.00 2.71
157 158 0.405585 CCCAGACCACCCTCACATTT 59.594 55.000 0.00 0.00 0.00 2.32
158 159 1.614317 CCCAGACCACCCTCACATTTC 60.614 57.143 0.00 0.00 0.00 2.17
159 160 1.442769 CAGACCACCCTCACATTTCG 58.557 55.000 0.00 0.00 0.00 3.46
160 161 0.324943 AGACCACCCTCACATTTCGG 59.675 55.000 0.00 0.00 0.00 4.30
161 162 1.303317 ACCACCCTCACATTTCGGC 60.303 57.895 0.00 0.00 0.00 5.54
162 163 1.002134 CCACCCTCACATTTCGGCT 60.002 57.895 0.00 0.00 0.00 5.52
163 164 0.609131 CCACCCTCACATTTCGGCTT 60.609 55.000 0.00 0.00 0.00 4.35
164 165 1.247567 CACCCTCACATTTCGGCTTT 58.752 50.000 0.00 0.00 0.00 3.51
165 166 1.068333 CACCCTCACATTTCGGCTTTG 60.068 52.381 0.00 0.00 0.00 2.77
166 167 1.247567 CCCTCACATTTCGGCTTTGT 58.752 50.000 0.00 0.00 0.00 2.83
167 168 1.200020 CCCTCACATTTCGGCTTTGTC 59.800 52.381 0.00 0.00 0.00 3.18
168 169 1.879380 CCTCACATTTCGGCTTTGTCA 59.121 47.619 0.00 0.00 0.00 3.58
169 170 2.489329 CCTCACATTTCGGCTTTGTCAT 59.511 45.455 0.00 0.00 0.00 3.06
170 171 3.057315 CCTCACATTTCGGCTTTGTCATT 60.057 43.478 0.00 0.00 0.00 2.57
171 172 4.549458 CTCACATTTCGGCTTTGTCATTT 58.451 39.130 0.00 0.00 0.00 2.32
172 173 4.942852 TCACATTTCGGCTTTGTCATTTT 58.057 34.783 0.00 0.00 0.00 1.82
173 174 5.355596 TCACATTTCGGCTTTGTCATTTTT 58.644 33.333 0.00 0.00 0.00 1.94
195 196 8.485578 TTTTTCCCAAGACATTTAATGTACCT 57.514 30.769 10.82 2.13 45.03 3.08
196 197 8.485578 TTTTCCCAAGACATTTAATGTACCTT 57.514 30.769 10.82 8.19 45.03 3.50
197 198 8.485578 TTTCCCAAGACATTTAATGTACCTTT 57.514 30.769 10.82 1.42 45.03 3.11
198 199 7.696992 TCCCAAGACATTTAATGTACCTTTC 57.303 36.000 10.82 0.00 45.03 2.62
199 200 7.466804 TCCCAAGACATTTAATGTACCTTTCT 58.533 34.615 10.82 0.00 45.03 2.52
200 201 7.947890 TCCCAAGACATTTAATGTACCTTTCTT 59.052 33.333 10.82 6.16 45.03 2.52
201 202 8.585018 CCCAAGACATTTAATGTACCTTTCTTT 58.415 33.333 10.82 0.00 45.03 2.52
202 203 9.981114 CCAAGACATTTAATGTACCTTTCTTTT 57.019 29.630 10.82 0.00 45.03 2.27
212 213 6.598753 TGTACCTTTCTTTTGTTCTTCTCG 57.401 37.500 0.00 0.00 0.00 4.04
213 214 6.110707 TGTACCTTTCTTTTGTTCTTCTCGT 58.889 36.000 0.00 0.00 0.00 4.18
214 215 5.736486 ACCTTTCTTTTGTTCTTCTCGTC 57.264 39.130 0.00 0.00 0.00 4.20
215 216 5.429130 ACCTTTCTTTTGTTCTTCTCGTCT 58.571 37.500 0.00 0.00 0.00 4.18
216 217 5.524281 ACCTTTCTTTTGTTCTTCTCGTCTC 59.476 40.000 0.00 0.00 0.00 3.36
217 218 5.050023 CCTTTCTTTTGTTCTTCTCGTCTCC 60.050 44.000 0.00 0.00 0.00 3.71
218 219 3.991367 TCTTTTGTTCTTCTCGTCTCCC 58.009 45.455 0.00 0.00 0.00 4.30
219 220 2.833631 TTTGTTCTTCTCGTCTCCCC 57.166 50.000 0.00 0.00 0.00 4.81
220 221 0.601558 TTGTTCTTCTCGTCTCCCCG 59.398 55.000 0.00 0.00 0.00 5.73
221 222 1.153804 GTTCTTCTCGTCTCCCCGC 60.154 63.158 0.00 0.00 0.00 6.13
222 223 2.348888 TTCTTCTCGTCTCCCCGCC 61.349 63.158 0.00 0.00 0.00 6.13
223 224 3.068691 CTTCTCGTCTCCCCGCCA 61.069 66.667 0.00 0.00 0.00 5.69
224 225 3.068691 TTCTCGTCTCCCCGCCAG 61.069 66.667 0.00 0.00 0.00 4.85
225 226 3.578968 TTCTCGTCTCCCCGCCAGA 62.579 63.158 0.00 0.00 0.00 3.86
226 227 3.068691 CTCGTCTCCCCGCCAGAA 61.069 66.667 0.00 0.00 0.00 3.02
227 228 3.068691 TCGTCTCCCCGCCAGAAG 61.069 66.667 0.00 0.00 0.00 2.85
228 229 3.382832 CGTCTCCCCGCCAGAAGT 61.383 66.667 0.00 0.00 0.00 3.01
229 230 2.050350 CGTCTCCCCGCCAGAAGTA 61.050 63.158 0.00 0.00 0.00 2.24
230 231 1.392710 CGTCTCCCCGCCAGAAGTAT 61.393 60.000 0.00 0.00 0.00 2.12
231 232 0.389757 GTCTCCCCGCCAGAAGTATC 59.610 60.000 0.00 0.00 0.00 2.24
232 233 0.261991 TCTCCCCGCCAGAAGTATCT 59.738 55.000 0.00 0.00 35.88 1.98
233 234 0.676736 CTCCCCGCCAGAAGTATCTC 59.323 60.000 0.00 0.00 32.03 2.75
234 235 0.032515 TCCCCGCCAGAAGTATCTCA 60.033 55.000 0.00 0.00 32.03 3.27
235 236 0.105039 CCCCGCCAGAAGTATCTCAC 59.895 60.000 0.00 0.00 32.03 3.51
236 237 0.105039 CCCGCCAGAAGTATCTCACC 59.895 60.000 0.00 0.00 32.03 4.02
237 238 0.824109 CCGCCAGAAGTATCTCACCA 59.176 55.000 0.00 0.00 32.03 4.17
238 239 1.207089 CCGCCAGAAGTATCTCACCAA 59.793 52.381 0.00 0.00 32.03 3.67
239 240 2.271800 CGCCAGAAGTATCTCACCAAC 58.728 52.381 0.00 0.00 32.03 3.77
240 241 2.093973 CGCCAGAAGTATCTCACCAACT 60.094 50.000 0.00 0.00 32.03 3.16
241 242 3.617531 CGCCAGAAGTATCTCACCAACTT 60.618 47.826 0.00 0.00 36.20 2.66
242 243 4.327680 GCCAGAAGTATCTCACCAACTTT 58.672 43.478 0.00 0.00 33.72 2.66
243 244 4.762251 GCCAGAAGTATCTCACCAACTTTT 59.238 41.667 0.00 0.00 33.72 2.27
244 245 5.106515 GCCAGAAGTATCTCACCAACTTTTC 60.107 44.000 0.00 0.00 33.72 2.29
245 246 5.997746 CCAGAAGTATCTCACCAACTTTTCA 59.002 40.000 0.00 0.00 33.72 2.69
246 247 6.656693 CCAGAAGTATCTCACCAACTTTTCAT 59.343 38.462 0.00 0.00 33.72 2.57
247 248 7.824289 CCAGAAGTATCTCACCAACTTTTCATA 59.176 37.037 0.00 0.00 33.72 2.15
248 249 9.388506 CAGAAGTATCTCACCAACTTTTCATAT 57.611 33.333 0.00 0.00 33.72 1.78
249 250 9.965902 AGAAGTATCTCACCAACTTTTCATATT 57.034 29.630 0.00 0.00 33.72 1.28
255 256 9.696917 ATCTCACCAACTTTTCATATTTTTCAC 57.303 29.630 0.00 0.00 0.00 3.18
256 257 8.690884 TCTCACCAACTTTTCATATTTTTCACA 58.309 29.630 0.00 0.00 0.00 3.58
257 258 9.311916 CTCACCAACTTTTCATATTTTTCACAA 57.688 29.630 0.00 0.00 0.00 3.33
258 259 9.658799 TCACCAACTTTTCATATTTTTCACAAA 57.341 25.926 0.00 0.00 0.00 2.83
267 268 9.766277 TTTCATATTTTTCACAAAAACTTGCAC 57.234 25.926 0.00 0.00 42.57 4.57
268 269 8.715191 TCATATTTTTCACAAAAACTTGCACT 57.285 26.923 0.00 0.00 42.57 4.40
269 270 8.816144 TCATATTTTTCACAAAAACTTGCACTC 58.184 29.630 0.00 0.00 42.57 3.51
270 271 8.602328 CATATTTTTCACAAAAACTTGCACTCA 58.398 29.630 0.00 0.00 42.57 3.41
271 272 7.614124 ATTTTTCACAAAAACTTGCACTCAT 57.386 28.000 0.00 0.00 42.57 2.90
272 273 6.645700 TTTTCACAAAAACTTGCACTCATC 57.354 33.333 0.00 0.00 29.44 2.92
273 274 5.581126 TTCACAAAAACTTGCACTCATCT 57.419 34.783 0.00 0.00 0.00 2.90
274 275 5.581126 TCACAAAAACTTGCACTCATCTT 57.419 34.783 0.00 0.00 0.00 2.40
275 276 5.342433 TCACAAAAACTTGCACTCATCTTG 58.658 37.500 0.00 0.00 0.00 3.02
276 277 5.125257 TCACAAAAACTTGCACTCATCTTGA 59.875 36.000 0.00 0.00 0.00 3.02
277 278 5.806502 CACAAAAACTTGCACTCATCTTGAA 59.193 36.000 0.00 0.00 0.00 2.69
278 279 6.310956 CACAAAAACTTGCACTCATCTTGAAA 59.689 34.615 0.00 0.00 0.00 2.69
279 280 6.873076 ACAAAAACTTGCACTCATCTTGAAAA 59.127 30.769 0.00 0.00 0.00 2.29
280 281 7.550196 ACAAAAACTTGCACTCATCTTGAAAAT 59.450 29.630 0.00 0.00 0.00 1.82
281 282 9.033481 CAAAAACTTGCACTCATCTTGAAAATA 57.967 29.630 0.00 0.00 0.00 1.40
282 283 8.579682 AAAACTTGCACTCATCTTGAAAATAC 57.420 30.769 0.00 0.00 0.00 1.89
283 284 7.516198 AACTTGCACTCATCTTGAAAATACT 57.484 32.000 0.00 0.00 0.00 2.12
284 285 7.138692 ACTTGCACTCATCTTGAAAATACTC 57.861 36.000 0.00 0.00 0.00 2.59
285 286 6.712095 ACTTGCACTCATCTTGAAAATACTCA 59.288 34.615 0.00 0.00 0.00 3.41
286 287 7.392673 ACTTGCACTCATCTTGAAAATACTCAT 59.607 33.333 0.00 0.00 0.00 2.90
287 288 7.080353 TGCACTCATCTTGAAAATACTCATG 57.920 36.000 0.00 0.00 0.00 3.07
288 289 6.094464 TGCACTCATCTTGAAAATACTCATGG 59.906 38.462 0.00 0.00 0.00 3.66
289 290 6.094603 GCACTCATCTTGAAAATACTCATGGT 59.905 38.462 0.00 0.00 0.00 3.55
290 291 7.280876 GCACTCATCTTGAAAATACTCATGGTA 59.719 37.037 0.00 0.00 34.62 3.25
291 292 9.334947 CACTCATCTTGAAAATACTCATGGTAT 57.665 33.333 0.00 0.00 42.38 2.73
297 298 9.559732 TCTTGAAAATACTCATGGTATATGTGG 57.440 33.333 7.12 0.00 39.94 4.17
298 299 8.690203 TTGAAAATACTCATGGTATATGTGGG 57.310 34.615 7.12 0.00 39.94 4.61
299 300 7.811282 TGAAAATACTCATGGTATATGTGGGT 58.189 34.615 7.12 0.00 39.94 4.51
300 301 8.939932 TGAAAATACTCATGGTATATGTGGGTA 58.060 33.333 7.12 0.00 39.94 3.69
301 302 9.787435 GAAAATACTCATGGTATATGTGGGTAA 57.213 33.333 7.12 0.00 39.94 2.85
303 304 9.793259 AAATACTCATGGTATATGTGGGTAAAG 57.207 33.333 7.12 0.00 39.94 1.85
304 305 5.621193 ACTCATGGTATATGTGGGTAAAGC 58.379 41.667 0.00 0.00 0.00 3.51
305 306 5.369699 ACTCATGGTATATGTGGGTAAAGCT 59.630 40.000 0.00 0.00 0.00 3.74
306 307 6.126478 ACTCATGGTATATGTGGGTAAAGCTT 60.126 38.462 0.00 0.00 0.00 3.74
307 308 6.061441 TCATGGTATATGTGGGTAAAGCTTG 58.939 40.000 0.00 0.00 0.00 4.01
308 309 5.702065 TGGTATATGTGGGTAAAGCTTGA 57.298 39.130 0.00 0.00 0.00 3.02
309 310 5.680619 TGGTATATGTGGGTAAAGCTTGAG 58.319 41.667 0.00 0.00 0.00 3.02
310 311 4.515567 GGTATATGTGGGTAAAGCTTGAGC 59.484 45.833 4.25 4.25 42.49 4.26
311 312 2.584835 ATGTGGGTAAAGCTTGAGCA 57.415 45.000 14.92 2.63 45.16 4.26
312 313 2.356665 TGTGGGTAAAGCTTGAGCAA 57.643 45.000 14.92 0.00 45.16 3.91
313 314 1.953686 TGTGGGTAAAGCTTGAGCAAC 59.046 47.619 12.99 12.99 45.16 4.17
314 315 1.069227 GTGGGTAAAGCTTGAGCAACG 60.069 52.381 14.92 0.00 45.16 4.10
315 316 0.521735 GGGTAAAGCTTGAGCAACGG 59.478 55.000 14.92 0.00 45.16 4.44
316 317 1.519408 GGTAAAGCTTGAGCAACGGA 58.481 50.000 8.20 0.00 45.16 4.69
317 318 1.197036 GGTAAAGCTTGAGCAACGGAC 59.803 52.381 8.20 0.00 45.16 4.79
318 319 2.143925 GTAAAGCTTGAGCAACGGACT 58.856 47.619 0.00 0.00 45.16 3.85
319 320 1.680338 AAAGCTTGAGCAACGGACTT 58.320 45.000 0.00 0.00 45.16 3.01
320 321 1.680338 AAGCTTGAGCAACGGACTTT 58.320 45.000 0.00 0.00 45.16 2.66
321 322 2.543777 AGCTTGAGCAACGGACTTTA 57.456 45.000 5.70 0.00 45.16 1.85
322 323 2.143925 AGCTTGAGCAACGGACTTTAC 58.856 47.619 5.70 0.00 45.16 2.01
323 324 1.197036 GCTTGAGCAACGGACTTTACC 59.803 52.381 0.00 0.00 41.59 2.85
324 325 2.489971 CTTGAGCAACGGACTTTACCA 58.510 47.619 0.00 0.00 0.00 3.25
325 326 2.623878 TGAGCAACGGACTTTACCAA 57.376 45.000 0.00 0.00 0.00 3.67
351 352 7.345392 AGGTTAGTTTACTTGGATAATCGGGTA 59.655 37.037 0.00 0.00 0.00 3.69
390 391 2.270527 GAGTCTTGCAGGAGGCCC 59.729 66.667 0.00 0.00 43.89 5.80
763 775 1.021390 GTTGACCACGCCATCCTCAG 61.021 60.000 0.00 0.00 0.00 3.35
764 776 2.512515 GACCACGCCATCCTCAGC 60.513 66.667 0.00 0.00 0.00 4.26
765 777 3.005539 ACCACGCCATCCTCAGCT 61.006 61.111 0.00 0.00 0.00 4.24
766 778 2.202987 CCACGCCATCCTCAGCTC 60.203 66.667 0.00 0.00 0.00 4.09
767 779 2.584418 CACGCCATCCTCAGCTCG 60.584 66.667 0.00 0.00 0.00 5.03
768 780 4.521062 ACGCCATCCTCAGCTCGC 62.521 66.667 0.00 0.00 0.00 5.03
769 781 4.218578 CGCCATCCTCAGCTCGCT 62.219 66.667 0.00 0.00 0.00 4.93
770 782 2.280052 GCCATCCTCAGCTCGCTC 60.280 66.667 0.00 0.00 0.00 5.03
771 783 2.795110 GCCATCCTCAGCTCGCTCT 61.795 63.158 0.00 0.00 0.00 4.09
772 784 1.067749 CCATCCTCAGCTCGCTCTG 59.932 63.158 0.00 0.00 35.46 3.35
773 785 1.390383 CCATCCTCAGCTCGCTCTGA 61.390 60.000 6.34 6.34 40.50 3.27
774 786 0.675083 CATCCTCAGCTCGCTCTGAT 59.325 55.000 6.85 0.00 41.73 2.90
775 787 0.961019 ATCCTCAGCTCGCTCTGATC 59.039 55.000 6.85 0.00 41.73 2.92
776 788 1.008652 CCTCAGCTCGCTCTGATCG 60.009 63.158 6.85 0.00 41.73 3.69
777 789 1.723608 CCTCAGCTCGCTCTGATCGT 61.724 60.000 6.85 0.00 41.73 3.73
778 790 0.316937 CTCAGCTCGCTCTGATCGTC 60.317 60.000 6.85 0.00 41.73 4.20
779 791 1.299014 CAGCTCGCTCTGATCGTCC 60.299 63.158 0.55 0.00 36.19 4.79
780 792 2.026879 GCTCGCTCTGATCGTCCC 59.973 66.667 0.55 0.00 0.00 4.46
820 871 7.043986 GCACGTACATGTATTTTGTTTGACAAA 60.044 33.333 9.18 0.00 45.37 2.83
881 932 1.165907 CCGCTCTTTCACTTGGCACA 61.166 55.000 0.00 0.00 0.00 4.57
895 946 2.364632 TGGCACATACAATACCTGCAC 58.635 47.619 0.00 0.00 0.00 4.57
1015 1122 4.588106 TGGCCAGAATGAAGATTTTGTTCA 59.412 37.500 0.00 0.00 39.69 3.18
1043 1150 2.085320 TCTCCTCGCTCTCACTGTAAC 58.915 52.381 0.00 0.00 0.00 2.50
1044 1151 2.088423 CTCCTCGCTCTCACTGTAACT 58.912 52.381 0.00 0.00 0.00 2.24
1673 1787 7.801893 TTCATCTTTAACTAGGTACCTTCCA 57.198 36.000 22.11 0.24 0.00 3.53
1751 2154 0.320771 AAGCTCGTGTCGCTTCCAAT 60.321 50.000 0.00 0.00 43.79 3.16
1782 2191 4.201851 CGGACAGGCTTCAACATCTTATTG 60.202 45.833 0.00 0.00 0.00 1.90
1846 2261 3.369052 CCGCTTATACTCCTCCACAAACA 60.369 47.826 0.00 0.00 0.00 2.83
1893 2308 1.536662 AACGTCCTTCTCCCTGGCT 60.537 57.895 0.00 0.00 0.00 4.75
1968 2383 0.520847 GGTTGCTCTTTGCTGCTCTC 59.479 55.000 0.00 0.00 43.37 3.20
1996 2411 0.471617 CCCATGATCCTCTTCGCCTT 59.528 55.000 0.00 0.00 0.00 4.35
2020 2435 1.137825 CCGACTGCTCGAGAAGGTC 59.862 63.158 24.52 20.12 43.06 3.85
2021 2436 1.137825 CGACTGCTCGAGAAGGTCC 59.862 63.158 24.52 11.77 43.06 4.46
2022 2437 1.137825 GACTGCTCGAGAAGGTCCG 59.862 63.158 24.52 0.00 0.00 4.79
2023 2438 2.272918 GACTGCTCGAGAAGGTCCGG 62.273 65.000 24.52 8.90 0.00 5.14
2024 2439 2.035155 TGCTCGAGAAGGTCCGGA 59.965 61.111 18.75 0.00 0.00 5.14
2025 2440 1.595993 CTGCTCGAGAAGGTCCGGAA 61.596 60.000 18.75 0.00 0.00 4.30
2026 2441 0.970937 TGCTCGAGAAGGTCCGGAAT 60.971 55.000 18.75 0.00 0.00 3.01
2027 2442 0.249114 GCTCGAGAAGGTCCGGAATC 60.249 60.000 18.75 5.26 0.00 2.52
2028 2443 1.394618 CTCGAGAAGGTCCGGAATCT 58.605 55.000 5.23 10.85 0.00 2.40
2029 2444 1.751924 CTCGAGAAGGTCCGGAATCTT 59.248 52.381 17.96 17.96 0.00 2.40
2030 2445 1.476891 TCGAGAAGGTCCGGAATCTTG 59.523 52.381 21.56 19.76 0.00 3.02
2031 2446 1.204941 CGAGAAGGTCCGGAATCTTGT 59.795 52.381 21.56 18.42 0.00 3.16
2032 2447 2.353803 CGAGAAGGTCCGGAATCTTGTT 60.354 50.000 21.56 12.01 0.00 2.83
2033 2448 3.003480 GAGAAGGTCCGGAATCTTGTTG 58.997 50.000 21.56 0.00 0.00 3.33
2034 2449 1.468914 GAAGGTCCGGAATCTTGTTGC 59.531 52.381 21.56 7.48 0.00 4.17
2035 2450 0.673644 AGGTCCGGAATCTTGTTGCG 60.674 55.000 5.23 0.00 0.00 4.85
2036 2451 0.672401 GGTCCGGAATCTTGTTGCGA 60.672 55.000 5.23 0.00 35.20 5.10
2037 2452 1.369625 GTCCGGAATCTTGTTGCGAT 58.630 50.000 5.23 0.00 35.20 4.58
2038 2453 2.546778 GTCCGGAATCTTGTTGCGATA 58.453 47.619 5.23 0.00 35.20 2.92
2039 2454 2.284417 GTCCGGAATCTTGTTGCGATAC 59.716 50.000 5.23 0.00 35.20 2.24
2040 2455 2.093921 TCCGGAATCTTGTTGCGATACA 60.094 45.455 0.00 0.00 35.20 2.29
2041 2456 2.872245 CCGGAATCTTGTTGCGATACAT 59.128 45.455 0.00 0.00 35.20 2.29
2042 2457 4.055360 CCGGAATCTTGTTGCGATACATA 58.945 43.478 0.00 0.00 35.20 2.29
2043 2458 4.084537 CCGGAATCTTGTTGCGATACATAC 60.085 45.833 0.00 0.00 35.20 2.39
2044 2459 4.084537 CGGAATCTTGTTGCGATACATACC 60.085 45.833 0.00 0.00 35.20 2.73
2045 2460 4.814234 GGAATCTTGTTGCGATACATACCA 59.186 41.667 0.00 0.00 0.00 3.25
2046 2461 5.470098 GGAATCTTGTTGCGATACATACCAT 59.530 40.000 0.00 0.00 0.00 3.55
2047 2462 5.929697 ATCTTGTTGCGATACATACCATG 57.070 39.130 0.00 0.00 0.00 3.66
2048 2463 5.017294 TCTTGTTGCGATACATACCATGA 57.983 39.130 0.00 0.00 0.00 3.07
2049 2464 5.423886 TCTTGTTGCGATACATACCATGAA 58.576 37.500 0.00 0.00 0.00 2.57
2050 2465 6.054941 TCTTGTTGCGATACATACCATGAAT 58.945 36.000 0.00 0.00 0.00 2.57
2051 2466 5.671742 TGTTGCGATACATACCATGAATG 57.328 39.130 0.00 0.00 0.00 2.67
2067 2482 1.184322 AATGGCGGCATGGTTTGTCA 61.184 50.000 26.50 0.00 0.00 3.58
2089 2504 0.400213 ATCGGTTGGAGGCACAAAGA 59.600 50.000 0.00 1.20 31.17 2.52
2115 2530 1.380785 CAGTAGACGGGGGTGGCTA 60.381 63.158 0.00 0.00 0.00 3.93
2235 5555 3.385384 CTCAGCAGAGGTGGCGGA 61.385 66.667 0.00 0.00 38.26 5.54
2262 5582 0.178964 CCCATGGGTTGGTCAGTGTT 60.179 55.000 23.93 0.00 44.83 3.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
16 17 7.731235 AGGCTAAATACTACCCAAAAGGAAAAA 59.269 33.333 0.00 0.00 39.89 1.94
17 18 7.243091 AGGCTAAATACTACCCAAAAGGAAAA 58.757 34.615 0.00 0.00 39.89 2.29
18 19 6.796648 AGGCTAAATACTACCCAAAAGGAAA 58.203 36.000 0.00 0.00 39.89 3.13
19 20 6.397217 AGGCTAAATACTACCCAAAAGGAA 57.603 37.500 0.00 0.00 39.89 3.36
20 21 6.012333 TGAAGGCTAAATACTACCCAAAAGGA 60.012 38.462 0.00 0.00 39.89 3.36
21 22 6.184789 TGAAGGCTAAATACTACCCAAAAGG 58.815 40.000 0.00 0.00 43.78 3.11
22 23 7.175990 TGTTGAAGGCTAAATACTACCCAAAAG 59.824 37.037 0.00 0.00 0.00 2.27
23 24 7.005296 TGTTGAAGGCTAAATACTACCCAAAA 58.995 34.615 0.00 0.00 0.00 2.44
24 25 6.431852 GTGTTGAAGGCTAAATACTACCCAAA 59.568 38.462 0.00 0.00 0.00 3.28
25 26 5.941647 GTGTTGAAGGCTAAATACTACCCAA 59.058 40.000 0.00 0.00 0.00 4.12
26 27 5.249852 AGTGTTGAAGGCTAAATACTACCCA 59.750 40.000 9.55 0.00 0.00 4.51
27 28 5.742063 AGTGTTGAAGGCTAAATACTACCC 58.258 41.667 9.55 0.00 0.00 3.69
28 29 6.535508 CAGAGTGTTGAAGGCTAAATACTACC 59.464 42.308 10.79 2.84 29.15 3.18
29 30 6.535508 CCAGAGTGTTGAAGGCTAAATACTAC 59.464 42.308 10.79 6.64 29.15 2.73
30 31 6.640518 CCAGAGTGTTGAAGGCTAAATACTA 58.359 40.000 10.79 0.00 29.15 1.82
31 32 5.491982 CCAGAGTGTTGAAGGCTAAATACT 58.508 41.667 10.67 10.67 31.34 2.12
32 33 4.095036 GCCAGAGTGTTGAAGGCTAAATAC 59.905 45.833 0.00 0.00 42.01 1.89
33 34 4.261801 GCCAGAGTGTTGAAGGCTAAATA 58.738 43.478 0.00 0.00 42.01 1.40
34 35 3.084786 GCCAGAGTGTTGAAGGCTAAAT 58.915 45.455 0.00 0.00 42.01 1.40
35 36 2.158682 TGCCAGAGTGTTGAAGGCTAAA 60.159 45.455 0.00 0.00 45.42 1.85
36 37 1.419762 TGCCAGAGTGTTGAAGGCTAA 59.580 47.619 0.00 0.00 45.42 3.09
37 38 1.055849 TGCCAGAGTGTTGAAGGCTA 58.944 50.000 0.00 0.00 45.42 3.93
38 39 0.536006 GTGCCAGAGTGTTGAAGGCT 60.536 55.000 0.00 0.00 45.42 4.58
39 40 0.819259 TGTGCCAGAGTGTTGAAGGC 60.819 55.000 0.00 0.00 45.41 4.35
40 41 1.901591 ATGTGCCAGAGTGTTGAAGG 58.098 50.000 0.00 0.00 0.00 3.46
41 42 3.120060 GCTTATGTGCCAGAGTGTTGAAG 60.120 47.826 0.00 0.00 0.00 3.02
42 43 2.813754 GCTTATGTGCCAGAGTGTTGAA 59.186 45.455 0.00 0.00 0.00 2.69
43 44 2.038952 AGCTTATGTGCCAGAGTGTTGA 59.961 45.455 0.00 0.00 0.00 3.18
44 45 2.430465 AGCTTATGTGCCAGAGTGTTG 58.570 47.619 0.00 0.00 0.00 3.33
45 46 2.867109 AGCTTATGTGCCAGAGTGTT 57.133 45.000 0.00 0.00 0.00 3.32
46 47 4.446371 GAATAGCTTATGTGCCAGAGTGT 58.554 43.478 0.00 0.00 0.00 3.55
47 48 3.492383 CGAATAGCTTATGTGCCAGAGTG 59.508 47.826 0.00 0.00 0.00 3.51
48 49 3.493350 CCGAATAGCTTATGTGCCAGAGT 60.493 47.826 0.00 0.00 0.00 3.24
49 50 3.062763 CCGAATAGCTTATGTGCCAGAG 58.937 50.000 0.00 0.00 0.00 3.35
50 51 2.434336 ACCGAATAGCTTATGTGCCAGA 59.566 45.455 0.00 0.00 0.00 3.86
51 52 2.802816 GACCGAATAGCTTATGTGCCAG 59.197 50.000 0.00 0.00 0.00 4.85
52 53 2.434336 AGACCGAATAGCTTATGTGCCA 59.566 45.455 0.00 0.00 0.00 4.92
53 54 3.113260 AGACCGAATAGCTTATGTGCC 57.887 47.619 0.00 0.00 0.00 5.01
54 55 4.570772 TCAAAGACCGAATAGCTTATGTGC 59.429 41.667 0.00 0.00 0.00 4.57
55 56 6.478588 GTTCAAAGACCGAATAGCTTATGTG 58.521 40.000 0.00 0.00 0.00 3.21
56 57 5.291128 CGTTCAAAGACCGAATAGCTTATGT 59.709 40.000 0.00 0.00 0.00 2.29
57 58 5.518847 TCGTTCAAAGACCGAATAGCTTATG 59.481 40.000 0.00 0.00 0.00 1.90
58 59 5.657474 TCGTTCAAAGACCGAATAGCTTAT 58.343 37.500 0.00 0.00 0.00 1.73
59 60 5.063180 TCGTTCAAAGACCGAATAGCTTA 57.937 39.130 0.00 0.00 0.00 3.09
60 61 3.921677 TCGTTCAAAGACCGAATAGCTT 58.078 40.909 0.00 0.00 0.00 3.74
61 62 3.056749 ACTCGTTCAAAGACCGAATAGCT 60.057 43.478 0.00 0.00 0.00 3.32
62 63 3.251571 ACTCGTTCAAAGACCGAATAGC 58.748 45.455 0.00 0.00 0.00 2.97
63 64 4.734917 AGACTCGTTCAAAGACCGAATAG 58.265 43.478 0.00 0.00 0.00 1.73
64 65 4.380233 GGAGACTCGTTCAAAGACCGAATA 60.380 45.833 0.00 0.00 0.00 1.75
65 66 3.576648 GAGACTCGTTCAAAGACCGAAT 58.423 45.455 0.00 0.00 0.00 3.34
66 67 2.288030 GGAGACTCGTTCAAAGACCGAA 60.288 50.000 0.00 0.00 0.00 4.30
67 68 1.268899 GGAGACTCGTTCAAAGACCGA 59.731 52.381 0.00 0.00 0.00 4.69
68 69 1.000607 TGGAGACTCGTTCAAAGACCG 60.001 52.381 0.00 0.00 0.00 4.79
69 70 2.814280 TGGAGACTCGTTCAAAGACC 57.186 50.000 0.00 0.00 0.00 3.85
70 71 2.413453 GCATGGAGACTCGTTCAAAGAC 59.587 50.000 0.00 0.00 0.00 3.01
71 72 2.300152 AGCATGGAGACTCGTTCAAAGA 59.700 45.455 0.00 0.00 0.00 2.52
72 73 2.693069 AGCATGGAGACTCGTTCAAAG 58.307 47.619 0.00 0.00 0.00 2.77
73 74 2.807967 CAAGCATGGAGACTCGTTCAAA 59.192 45.455 0.00 0.00 0.00 2.69
74 75 2.416747 CAAGCATGGAGACTCGTTCAA 58.583 47.619 0.00 0.00 0.00 2.69
75 76 2.084610 CAAGCATGGAGACTCGTTCA 57.915 50.000 0.00 0.00 0.00 3.18
101 102 5.293079 GCGTATCTTCAATCAAGCTCTTCTT 59.707 40.000 0.00 0.00 34.78 2.52
102 103 4.808364 GCGTATCTTCAATCAAGCTCTTCT 59.192 41.667 0.00 0.00 31.26 2.85
103 104 4.568359 TGCGTATCTTCAATCAAGCTCTTC 59.432 41.667 0.00 0.00 31.26 2.87
104 105 4.507710 TGCGTATCTTCAATCAAGCTCTT 58.492 39.130 0.00 0.00 31.26 2.85
105 106 4.128925 TGCGTATCTTCAATCAAGCTCT 57.871 40.909 0.00 0.00 31.26 4.09
106 107 6.367149 TGATATGCGTATCTTCAATCAAGCTC 59.633 38.462 23.17 0.00 38.03 4.09
107 108 6.146837 GTGATATGCGTATCTTCAATCAAGCT 59.853 38.462 23.17 0.00 38.03 3.74
108 109 6.302615 GTGATATGCGTATCTTCAATCAAGC 58.697 40.000 23.17 0.00 38.03 4.01
109 110 6.363357 TCGTGATATGCGTATCTTCAATCAAG 59.637 38.462 23.17 9.18 38.03 3.02
110 111 6.212955 TCGTGATATGCGTATCTTCAATCAA 58.787 36.000 23.17 1.55 38.03 2.57
111 112 5.768317 TCGTGATATGCGTATCTTCAATCA 58.232 37.500 23.17 4.57 38.03 2.57
112 113 6.690704 TTCGTGATATGCGTATCTTCAATC 57.309 37.500 23.17 2.02 38.03 2.67
113 114 6.346919 GCTTTCGTGATATGCGTATCTTCAAT 60.347 38.462 23.17 0.00 38.03 2.57
114 115 5.051039 GCTTTCGTGATATGCGTATCTTCAA 60.051 40.000 23.17 11.88 38.03 2.69
115 116 4.444388 GCTTTCGTGATATGCGTATCTTCA 59.556 41.667 23.17 5.66 38.03 3.02
116 117 4.143305 GGCTTTCGTGATATGCGTATCTTC 60.143 45.833 23.17 15.85 38.03 2.87
117 118 3.741344 GGCTTTCGTGATATGCGTATCTT 59.259 43.478 23.17 0.00 38.03 2.40
118 119 3.318017 GGCTTTCGTGATATGCGTATCT 58.682 45.455 23.17 0.00 38.03 1.98
119 120 2.412089 GGGCTTTCGTGATATGCGTATC 59.588 50.000 17.52 17.52 37.75 2.24
120 121 2.224185 TGGGCTTTCGTGATATGCGTAT 60.224 45.455 0.00 0.00 0.00 3.06
121 122 1.137282 TGGGCTTTCGTGATATGCGTA 59.863 47.619 0.00 0.00 0.00 4.42
122 123 0.107897 TGGGCTTTCGTGATATGCGT 60.108 50.000 0.00 0.00 0.00 5.24
123 124 0.583438 CTGGGCTTTCGTGATATGCG 59.417 55.000 0.00 0.00 0.00 4.73
124 125 1.599542 GTCTGGGCTTTCGTGATATGC 59.400 52.381 0.00 0.00 0.00 3.14
125 126 2.213499 GGTCTGGGCTTTCGTGATATG 58.787 52.381 0.00 0.00 0.00 1.78
126 127 1.837439 TGGTCTGGGCTTTCGTGATAT 59.163 47.619 0.00 0.00 0.00 1.63
127 128 1.066430 GTGGTCTGGGCTTTCGTGATA 60.066 52.381 0.00 0.00 0.00 2.15
128 129 0.321653 GTGGTCTGGGCTTTCGTGAT 60.322 55.000 0.00 0.00 0.00 3.06
129 130 1.070786 GTGGTCTGGGCTTTCGTGA 59.929 57.895 0.00 0.00 0.00 4.35
130 131 1.966451 GGTGGTCTGGGCTTTCGTG 60.966 63.158 0.00 0.00 0.00 4.35
131 132 2.430367 GGTGGTCTGGGCTTTCGT 59.570 61.111 0.00 0.00 0.00 3.85
132 133 2.359975 GGGTGGTCTGGGCTTTCG 60.360 66.667 0.00 0.00 0.00 3.46
133 134 1.002011 GAGGGTGGTCTGGGCTTTC 60.002 63.158 0.00 0.00 0.00 2.62
134 135 1.774217 TGAGGGTGGTCTGGGCTTT 60.774 57.895 0.00 0.00 0.00 3.51
135 136 2.121963 TGAGGGTGGTCTGGGCTT 60.122 61.111 0.00 0.00 0.00 4.35
136 137 2.930562 GTGAGGGTGGTCTGGGCT 60.931 66.667 0.00 0.00 0.00 5.19
137 138 2.142292 AATGTGAGGGTGGTCTGGGC 62.142 60.000 0.00 0.00 0.00 5.36
138 139 0.405585 AAATGTGAGGGTGGTCTGGG 59.594 55.000 0.00 0.00 0.00 4.45
139 140 1.826385 GAAATGTGAGGGTGGTCTGG 58.174 55.000 0.00 0.00 0.00 3.86
140 141 1.442769 CGAAATGTGAGGGTGGTCTG 58.557 55.000 0.00 0.00 0.00 3.51
141 142 0.324943 CCGAAATGTGAGGGTGGTCT 59.675 55.000 0.00 0.00 0.00 3.85
142 143 1.305930 GCCGAAATGTGAGGGTGGTC 61.306 60.000 0.00 0.00 0.00 4.02
143 144 1.303317 GCCGAAATGTGAGGGTGGT 60.303 57.895 0.00 0.00 0.00 4.16
144 145 0.609131 AAGCCGAAATGTGAGGGTGG 60.609 55.000 0.00 0.00 35.74 4.61
145 146 1.068333 CAAAGCCGAAATGTGAGGGTG 60.068 52.381 0.00 0.00 35.74 4.61
146 147 1.247567 CAAAGCCGAAATGTGAGGGT 58.752 50.000 0.00 0.00 37.35 4.34
147 148 1.200020 GACAAAGCCGAAATGTGAGGG 59.800 52.381 0.00 0.00 0.00 4.30
148 149 1.879380 TGACAAAGCCGAAATGTGAGG 59.121 47.619 0.00 0.00 0.00 3.86
149 150 3.837213 ATGACAAAGCCGAAATGTGAG 57.163 42.857 0.00 0.00 0.00 3.51
150 151 4.582701 AAATGACAAAGCCGAAATGTGA 57.417 36.364 0.00 0.00 0.00 3.58
151 152 5.655893 AAAAATGACAAAGCCGAAATGTG 57.344 34.783 0.00 0.00 0.00 3.21
170 171 8.485578 AGGTACATTAAATGTCTTGGGAAAAA 57.514 30.769 0.00 0.00 43.67 1.94
171 172 8.485578 AAGGTACATTAAATGTCTTGGGAAAA 57.514 30.769 0.00 0.00 43.67 2.29
172 173 8.485578 AAAGGTACATTAAATGTCTTGGGAAA 57.514 30.769 0.00 0.00 43.67 3.13
173 174 7.947890 AGAAAGGTACATTAAATGTCTTGGGAA 59.052 33.333 0.00 0.00 43.67 3.97
174 175 7.466804 AGAAAGGTACATTAAATGTCTTGGGA 58.533 34.615 0.00 0.00 43.67 4.37
175 176 7.703058 AGAAAGGTACATTAAATGTCTTGGG 57.297 36.000 0.00 0.00 43.67 4.12
176 177 9.981114 AAAAGAAAGGTACATTAAATGTCTTGG 57.019 29.630 5.25 0.00 43.67 3.61
186 187 8.770828 CGAGAAGAACAAAAGAAAGGTACATTA 58.229 33.333 0.00 0.00 0.00 1.90
187 188 7.282450 ACGAGAAGAACAAAAGAAAGGTACATT 59.718 33.333 0.00 0.00 0.00 2.71
188 189 6.766467 ACGAGAAGAACAAAAGAAAGGTACAT 59.234 34.615 0.00 0.00 0.00 2.29
189 190 6.110707 ACGAGAAGAACAAAAGAAAGGTACA 58.889 36.000 0.00 0.00 0.00 2.90
190 191 6.479331 AGACGAGAAGAACAAAAGAAAGGTAC 59.521 38.462 0.00 0.00 0.00 3.34
191 192 6.579865 AGACGAGAAGAACAAAAGAAAGGTA 58.420 36.000 0.00 0.00 0.00 3.08
192 193 5.429130 AGACGAGAAGAACAAAAGAAAGGT 58.571 37.500 0.00 0.00 0.00 3.50
193 194 5.050023 GGAGACGAGAAGAACAAAAGAAAGG 60.050 44.000 0.00 0.00 0.00 3.11
194 195 5.050023 GGGAGACGAGAAGAACAAAAGAAAG 60.050 44.000 0.00 0.00 0.00 2.62
195 196 4.814771 GGGAGACGAGAAGAACAAAAGAAA 59.185 41.667 0.00 0.00 0.00 2.52
196 197 4.377897 GGGAGACGAGAAGAACAAAAGAA 58.622 43.478 0.00 0.00 0.00 2.52
197 198 3.244112 GGGGAGACGAGAAGAACAAAAGA 60.244 47.826 0.00 0.00 0.00 2.52
198 199 3.067833 GGGGAGACGAGAAGAACAAAAG 58.932 50.000 0.00 0.00 0.00 2.27
199 200 2.547218 CGGGGAGACGAGAAGAACAAAA 60.547 50.000 0.00 0.00 35.47 2.44
200 201 1.000506 CGGGGAGACGAGAAGAACAAA 59.999 52.381 0.00 0.00 35.47 2.83
201 202 0.601558 CGGGGAGACGAGAAGAACAA 59.398 55.000 0.00 0.00 35.47 2.83
202 203 1.874345 GCGGGGAGACGAGAAGAACA 61.874 60.000 0.00 0.00 35.47 3.18
203 204 1.153804 GCGGGGAGACGAGAAGAAC 60.154 63.158 0.00 0.00 35.47 3.01
204 205 2.348888 GGCGGGGAGACGAGAAGAA 61.349 63.158 0.00 0.00 35.47 2.52
205 206 2.754658 GGCGGGGAGACGAGAAGA 60.755 66.667 0.00 0.00 35.47 2.87
206 207 3.068691 TGGCGGGGAGACGAGAAG 61.069 66.667 0.00 0.00 35.47 2.85
207 208 3.068691 CTGGCGGGGAGACGAGAA 61.069 66.667 0.00 0.00 35.47 2.87
208 209 3.578968 TTCTGGCGGGGAGACGAGA 62.579 63.158 0.00 0.00 35.47 4.04
209 210 3.068691 TTCTGGCGGGGAGACGAG 61.069 66.667 0.00 0.00 35.47 4.18
210 211 2.488771 TACTTCTGGCGGGGAGACGA 62.489 60.000 0.00 0.00 35.47 4.20
211 212 1.392710 ATACTTCTGGCGGGGAGACG 61.393 60.000 0.00 0.00 0.00 4.18
212 213 0.389757 GATACTTCTGGCGGGGAGAC 59.610 60.000 0.00 0.00 0.00 3.36
213 214 0.261991 AGATACTTCTGGCGGGGAGA 59.738 55.000 0.00 0.00 0.00 3.71
214 215 0.676736 GAGATACTTCTGGCGGGGAG 59.323 60.000 0.00 0.00 30.30 4.30
215 216 0.032515 TGAGATACTTCTGGCGGGGA 60.033 55.000 0.00 0.00 30.30 4.81
216 217 0.105039 GTGAGATACTTCTGGCGGGG 59.895 60.000 0.00 0.00 30.30 5.73
217 218 0.105039 GGTGAGATACTTCTGGCGGG 59.895 60.000 0.00 0.00 30.30 6.13
218 219 0.824109 TGGTGAGATACTTCTGGCGG 59.176 55.000 0.00 0.00 30.30 6.13
219 220 2.093973 AGTTGGTGAGATACTTCTGGCG 60.094 50.000 0.00 0.00 30.30 5.69
220 221 3.618690 AGTTGGTGAGATACTTCTGGC 57.381 47.619 0.00 0.00 30.30 4.85
221 222 5.997746 TGAAAAGTTGGTGAGATACTTCTGG 59.002 40.000 0.00 0.00 31.26 3.86
222 223 7.678947 ATGAAAAGTTGGTGAGATACTTCTG 57.321 36.000 0.00 0.00 31.26 3.02
223 224 9.965902 AATATGAAAAGTTGGTGAGATACTTCT 57.034 29.630 0.00 0.00 31.26 2.85
229 230 9.696917 GTGAAAAATATGAAAAGTTGGTGAGAT 57.303 29.630 0.00 0.00 0.00 2.75
230 231 8.690884 TGTGAAAAATATGAAAAGTTGGTGAGA 58.309 29.630 0.00 0.00 0.00 3.27
231 232 8.870160 TGTGAAAAATATGAAAAGTTGGTGAG 57.130 30.769 0.00 0.00 0.00 3.51
232 233 9.658799 TTTGTGAAAAATATGAAAAGTTGGTGA 57.341 25.926 0.00 0.00 0.00 4.02
241 242 9.766277 GTGCAAGTTTTTGTGAAAAATATGAAA 57.234 25.926 0.00 0.00 41.85 2.69
242 243 9.160496 AGTGCAAGTTTTTGTGAAAAATATGAA 57.840 25.926 0.00 0.00 41.85 2.57
243 244 8.715191 AGTGCAAGTTTTTGTGAAAAATATGA 57.285 26.923 0.00 0.00 41.85 2.15
244 245 8.602328 TGAGTGCAAGTTTTTGTGAAAAATATG 58.398 29.630 0.00 0.00 41.85 1.78
245 246 8.715191 TGAGTGCAAGTTTTTGTGAAAAATAT 57.285 26.923 0.00 0.00 41.85 1.28
246 247 8.715191 ATGAGTGCAAGTTTTTGTGAAAAATA 57.285 26.923 0.00 0.00 41.85 1.40
247 248 7.550196 AGATGAGTGCAAGTTTTTGTGAAAAAT 59.450 29.630 0.00 0.00 41.85 1.82
248 249 6.873076 AGATGAGTGCAAGTTTTTGTGAAAAA 59.127 30.769 0.00 0.00 36.56 1.94
249 250 6.397272 AGATGAGTGCAAGTTTTTGTGAAAA 58.603 32.000 0.00 0.00 36.65 2.29
250 251 5.964758 AGATGAGTGCAAGTTTTTGTGAAA 58.035 33.333 0.00 0.00 36.65 2.69
251 252 5.581126 AGATGAGTGCAAGTTTTTGTGAA 57.419 34.783 0.00 0.00 36.65 3.18
252 253 5.125257 TCAAGATGAGTGCAAGTTTTTGTGA 59.875 36.000 0.00 0.00 36.65 3.58
253 254 5.342433 TCAAGATGAGTGCAAGTTTTTGTG 58.658 37.500 0.00 0.00 36.65 3.33
254 255 5.581126 TCAAGATGAGTGCAAGTTTTTGT 57.419 34.783 0.00 0.00 36.65 2.83
255 256 6.890663 TTTCAAGATGAGTGCAAGTTTTTG 57.109 33.333 0.00 0.00 37.36 2.44
256 257 9.034544 GTATTTTCAAGATGAGTGCAAGTTTTT 57.965 29.630 0.00 0.00 0.00 1.94
257 258 8.416329 AGTATTTTCAAGATGAGTGCAAGTTTT 58.584 29.630 0.00 0.00 0.00 2.43
258 259 7.945134 AGTATTTTCAAGATGAGTGCAAGTTT 58.055 30.769 0.00 0.00 0.00 2.66
259 260 7.229306 TGAGTATTTTCAAGATGAGTGCAAGTT 59.771 33.333 0.00 0.00 0.00 2.66
260 261 6.712095 TGAGTATTTTCAAGATGAGTGCAAGT 59.288 34.615 0.00 0.00 0.00 3.16
261 262 7.137490 TGAGTATTTTCAAGATGAGTGCAAG 57.863 36.000 0.00 0.00 0.00 4.01
262 263 7.362315 CCATGAGTATTTTCAAGATGAGTGCAA 60.362 37.037 0.00 0.00 0.00 4.08
263 264 6.094464 CCATGAGTATTTTCAAGATGAGTGCA 59.906 38.462 0.00 0.00 0.00 4.57
264 265 6.094603 ACCATGAGTATTTTCAAGATGAGTGC 59.905 38.462 0.00 0.00 0.00 4.40
265 266 7.621428 ACCATGAGTATTTTCAAGATGAGTG 57.379 36.000 0.00 0.00 0.00 3.51
271 272 9.559732 CCACATATACCATGAGTATTTTCAAGA 57.440 33.333 10.78 0.00 41.97 3.02
272 273 8.786898 CCCACATATACCATGAGTATTTTCAAG 58.213 37.037 10.78 0.00 41.97 3.02
273 274 8.278639 ACCCACATATACCATGAGTATTTTCAA 58.721 33.333 10.78 0.00 41.97 2.69
274 275 7.811282 ACCCACATATACCATGAGTATTTTCA 58.189 34.615 10.78 0.00 41.97 2.69
275 276 9.787435 TTACCCACATATACCATGAGTATTTTC 57.213 33.333 10.78 0.00 41.97 2.29
277 278 9.793259 CTTTACCCACATATACCATGAGTATTT 57.207 33.333 10.78 3.04 41.97 1.40
278 279 7.883311 GCTTTACCCACATATACCATGAGTATT 59.117 37.037 10.78 0.42 41.97 1.89
279 280 7.237679 AGCTTTACCCACATATACCATGAGTAT 59.762 37.037 10.46 10.46 44.17 2.12
280 281 6.557253 AGCTTTACCCACATATACCATGAGTA 59.443 38.462 0.00 0.00 34.76 2.59
281 282 5.369699 AGCTTTACCCACATATACCATGAGT 59.630 40.000 0.00 0.00 0.00 3.41
282 283 5.869579 AGCTTTACCCACATATACCATGAG 58.130 41.667 0.00 0.00 0.00 2.90
283 284 5.904984 AGCTTTACCCACATATACCATGA 57.095 39.130 0.00 0.00 0.00 3.07
284 285 6.061441 TCAAGCTTTACCCACATATACCATG 58.939 40.000 0.00 0.00 0.00 3.66
285 286 6.260700 TCAAGCTTTACCCACATATACCAT 57.739 37.500 0.00 0.00 0.00 3.55
286 287 5.680619 CTCAAGCTTTACCCACATATACCA 58.319 41.667 0.00 0.00 0.00 3.25
287 288 4.515567 GCTCAAGCTTTACCCACATATACC 59.484 45.833 0.00 0.00 38.21 2.73
288 289 5.123227 TGCTCAAGCTTTACCCACATATAC 58.877 41.667 0.00 0.00 42.66 1.47
289 290 5.366482 TGCTCAAGCTTTACCCACATATA 57.634 39.130 0.00 0.00 42.66 0.86
290 291 4.235079 TGCTCAAGCTTTACCCACATAT 57.765 40.909 0.00 0.00 42.66 1.78
291 292 3.712016 TGCTCAAGCTTTACCCACATA 57.288 42.857 0.00 0.00 42.66 2.29
292 293 2.558359 GTTGCTCAAGCTTTACCCACAT 59.442 45.455 0.00 0.00 42.66 3.21
293 294 1.953686 GTTGCTCAAGCTTTACCCACA 59.046 47.619 0.00 0.00 42.66 4.17
294 295 1.069227 CGTTGCTCAAGCTTTACCCAC 60.069 52.381 0.00 0.00 42.66 4.61
295 296 1.234821 CGTTGCTCAAGCTTTACCCA 58.765 50.000 0.00 0.00 42.66 4.51
296 297 0.521735 CCGTTGCTCAAGCTTTACCC 59.478 55.000 0.00 0.00 42.66 3.69
297 298 1.197036 GTCCGTTGCTCAAGCTTTACC 59.803 52.381 0.00 0.00 42.66 2.85
298 299 2.143925 AGTCCGTTGCTCAAGCTTTAC 58.856 47.619 0.00 0.00 42.66 2.01
299 300 2.543777 AGTCCGTTGCTCAAGCTTTA 57.456 45.000 0.00 0.00 42.66 1.85
300 301 1.680338 AAGTCCGTTGCTCAAGCTTT 58.320 45.000 0.00 0.00 42.66 3.51
301 302 1.680338 AAAGTCCGTTGCTCAAGCTT 58.320 45.000 3.32 0.00 42.66 3.74
302 303 2.143925 GTAAAGTCCGTTGCTCAAGCT 58.856 47.619 3.32 0.00 42.66 3.74
303 304 1.197036 GGTAAAGTCCGTTGCTCAAGC 59.803 52.381 0.00 0.00 42.50 4.01
304 305 2.489971 TGGTAAAGTCCGTTGCTCAAG 58.510 47.619 0.00 0.00 0.00 3.02
305 306 2.623878 TGGTAAAGTCCGTTGCTCAA 57.376 45.000 0.00 0.00 0.00 3.02
306 307 2.489971 CTTGGTAAAGTCCGTTGCTCA 58.510 47.619 0.00 0.00 0.00 4.26
307 308 1.804748 CCTTGGTAAAGTCCGTTGCTC 59.195 52.381 0.00 0.00 0.00 4.26
308 309 1.142262 ACCTTGGTAAAGTCCGTTGCT 59.858 47.619 0.00 0.00 0.00 3.91
309 310 1.601166 ACCTTGGTAAAGTCCGTTGC 58.399 50.000 0.00 0.00 0.00 4.17
310 311 4.383173 ACTAACCTTGGTAAAGTCCGTTG 58.617 43.478 0.00 0.00 0.00 4.10
311 312 4.694760 ACTAACCTTGGTAAAGTCCGTT 57.305 40.909 0.00 0.00 0.00 4.44
312 313 4.694760 AACTAACCTTGGTAAAGTCCGT 57.305 40.909 7.80 0.00 0.00 4.69
313 314 6.226052 AGTAAACTAACCTTGGTAAAGTCCG 58.774 40.000 7.80 0.00 0.00 4.79
314 315 7.040892 CCAAGTAAACTAACCTTGGTAAAGTCC 60.041 40.741 9.04 0.00 46.56 3.85
315 316 7.868775 CCAAGTAAACTAACCTTGGTAAAGTC 58.131 38.462 9.04 0.00 46.56 3.01
316 317 7.812690 CCAAGTAAACTAACCTTGGTAAAGT 57.187 36.000 9.04 0.00 46.56 2.66
323 324 7.012044 CCCGATTATCCAAGTAAACTAACCTTG 59.988 40.741 0.00 0.00 36.26 3.61
324 325 7.052248 CCCGATTATCCAAGTAAACTAACCTT 58.948 38.462 0.00 0.00 0.00 3.50
325 326 6.157471 ACCCGATTATCCAAGTAAACTAACCT 59.843 38.462 0.00 0.00 0.00 3.50
351 352 4.292571 TCCCGATTCCTAGAGATATGGACT 59.707 45.833 0.00 0.00 0.00 3.85
390 391 8.526218 AATGATGCGTAGTATAAGATCACTTG 57.474 34.615 0.00 0.00 37.53 3.16
436 437 1.202651 ACAGTTTAGGACACGCAAGCT 60.203 47.619 0.00 0.00 45.62 3.74
763 775 2.026879 GGGACGATCAGAGCGAGC 59.973 66.667 16.49 6.12 0.00 5.03
776 788 1.578206 GCCAAGTGAAAGAGCGGGAC 61.578 60.000 0.00 0.00 0.00 4.46
777 789 1.302511 GCCAAGTGAAAGAGCGGGA 60.303 57.895 0.00 0.00 0.00 5.14
778 790 1.600636 TGCCAAGTGAAAGAGCGGG 60.601 57.895 0.00 0.00 0.00 6.13
779 791 1.576421 GTGCCAAGTGAAAGAGCGG 59.424 57.895 0.00 0.00 0.00 5.52
780 792 1.205064 CGTGCCAAGTGAAAGAGCG 59.795 57.895 0.00 0.00 0.00 5.03
820 871 0.541392 TGGCGTGGTCAGCAGATTAT 59.459 50.000 0.00 0.00 36.08 1.28
881 932 3.774766 TGAGGTCTGTGCAGGTATTGTAT 59.225 43.478 0.00 0.00 0.00 2.29
895 946 3.784701 AGCTGTACGTAATGAGGTCTG 57.215 47.619 0.00 0.00 0.00 3.51
1015 1122 2.312390 GAGAGCGAGGAGAAATAGGGT 58.688 52.381 0.00 0.00 0.00 4.34
1673 1787 3.923864 TCTCGCAGCAACCCACGT 61.924 61.111 0.00 0.00 0.00 4.49
1751 2154 2.377628 GAAGCCTGTCCGTGGTCACA 62.378 60.000 1.90 0.00 0.00 3.58
1782 2191 0.382873 TGAAGCATGCAATGGCGATC 59.617 50.000 21.98 5.30 46.86 3.69
1846 2261 2.990479 GTTCAGGAGCGTGGGGAT 59.010 61.111 0.00 0.00 0.00 3.85
1893 2308 3.153919 GTGGCTTGTGGATTTTGAGGTA 58.846 45.455 0.00 0.00 0.00 3.08
1992 2407 2.435059 GCAGTCGGACCTCAAGGC 60.435 66.667 4.14 0.00 39.32 4.35
1996 2411 2.033602 TCGAGCAGTCGGACCTCA 59.966 61.111 4.14 0.00 46.80 3.86
2020 2435 2.276201 TGTATCGCAACAAGATTCCGG 58.724 47.619 0.00 0.00 0.00 5.14
2021 2436 4.084537 GGTATGTATCGCAACAAGATTCCG 60.085 45.833 0.00 0.00 32.02 4.30
2022 2437 4.814234 TGGTATGTATCGCAACAAGATTCC 59.186 41.667 0.00 0.00 32.02 3.01
2023 2438 5.984233 TGGTATGTATCGCAACAAGATTC 57.016 39.130 0.00 0.00 32.02 2.52
2024 2439 6.054941 TCATGGTATGTATCGCAACAAGATT 58.945 36.000 0.00 0.00 32.02 2.40
2025 2440 5.610398 TCATGGTATGTATCGCAACAAGAT 58.390 37.500 0.00 0.00 32.02 2.40
2026 2441 5.017294 TCATGGTATGTATCGCAACAAGA 57.983 39.130 0.00 0.00 32.02 3.02
2027 2442 5.733226 TTCATGGTATGTATCGCAACAAG 57.267 39.130 0.00 0.00 32.02 3.16
2028 2443 5.008514 CCATTCATGGTATGTATCGCAACAA 59.991 40.000 0.00 0.00 43.05 2.83
2029 2444 4.514816 CCATTCATGGTATGTATCGCAACA 59.485 41.667 0.00 0.00 43.05 3.33
2030 2445 5.034554 CCATTCATGGTATGTATCGCAAC 57.965 43.478 0.00 0.00 43.05 4.17
2044 2459 0.176219 AAACCATGCCGCCATTCATG 59.824 50.000 0.00 0.00 39.67 3.07
2045 2460 0.176219 CAAACCATGCCGCCATTCAT 59.824 50.000 0.00 0.00 0.00 2.57
2046 2461 1.184322 ACAAACCATGCCGCCATTCA 61.184 50.000 0.00 0.00 0.00 2.57
2047 2462 0.458370 GACAAACCATGCCGCCATTC 60.458 55.000 0.00 0.00 0.00 2.67
2048 2463 1.184322 TGACAAACCATGCCGCCATT 61.184 50.000 0.00 0.00 0.00 3.16
2049 2464 1.606025 TGACAAACCATGCCGCCAT 60.606 52.632 0.00 0.00 0.00 4.40
2050 2465 2.203408 TGACAAACCATGCCGCCA 60.203 55.556 0.00 0.00 0.00 5.69
2051 2466 2.258286 GTGACAAACCATGCCGCC 59.742 61.111 0.00 0.00 0.00 6.13
2089 2504 0.976073 CCCCGTCTACTGGTGGTGAT 60.976 60.000 0.00 0.00 0.00 3.06
2174 2589 1.591768 TCTAATCAGGAACCACCCCC 58.408 55.000 0.00 0.00 40.05 5.40
2179 2594 4.471025 TGCTGAAGATCTAATCAGGAACCA 59.529 41.667 20.85 10.76 40.44 3.67
2235 5555 4.440829 AACCCATGGGCGCGGAAT 62.441 61.111 31.73 6.30 39.32 3.01
2253 5573 3.414700 CGCCGCTCAACACTGACC 61.415 66.667 0.00 0.00 0.00 4.02
2262 5582 1.035385 TCTATCTCCAACGCCGCTCA 61.035 55.000 0.00 0.00 0.00 4.26
2268 5588 1.666189 GCACCTTTCTATCTCCAACGC 59.334 52.381 0.00 0.00 0.00 4.84
2321 5642 1.834378 CTCCTCGCTGCCATCCCTA 60.834 63.158 0.00 0.00 0.00 3.53


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.