Multiple sequence alignment - TraesCS2D01G560000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G560000 chr2D 100.000 5954 0 0 1 5954 632983511 632977558 0.000000e+00 10996.0
1 TraesCS2D01G560000 chr2D 89.757 576 50 3 76 647 632983350 632982780 0.000000e+00 728.0
2 TraesCS2D01G560000 chr2D 89.757 576 50 3 162 732 632983436 632982865 0.000000e+00 728.0
3 TraesCS2D01G560000 chr2D 87.800 500 50 5 233 727 632983449 632982956 5.180000e-160 575.0
4 TraesCS2D01G560000 chr2B 93.688 4800 154 59 227 4947 776218232 776222961 0.000000e+00 7047.0
5 TraesCS2D01G560000 chr2B 92.143 560 39 3 1 556 776218174 776218732 0.000000e+00 785.0
6 TraesCS2D01G560000 chr2B 87.525 505 54 3 147 647 776218238 776218737 5.180000e-160 575.0
7 TraesCS2D01G560000 chr2B 94.595 296 7 5 4966 5252 776230869 776231164 3.270000e-122 449.0
8 TraesCS2D01G560000 chr2B 85.976 328 36 3 63 384 776218409 776218732 5.710000e-90 342.0
9 TraesCS2D01G560000 chr2B 93.631 157 6 2 4104 4259 778332893 778333046 1.290000e-56 231.0
10 TraesCS2D01G560000 chr2B 87.234 188 10 8 5737 5920 776231968 776232145 1.010000e-47 202.0
11 TraesCS2D01G560000 chr2B 81.538 130 15 5 5256 5378 640609363 640609490 1.370000e-16 99.0
12 TraesCS2D01G560000 chr2A 92.497 2559 142 27 1 2546 759460694 759463215 0.000000e+00 3616.0
13 TraesCS2D01G560000 chr2A 91.381 1137 43 23 3254 4350 759463879 759465000 0.000000e+00 1506.0
14 TraesCS2D01G560000 chr2A 93.344 616 21 13 4355 4951 759465049 759465663 0.000000e+00 893.0
15 TraesCS2D01G560000 chr2A 89.789 568 52 3 76 642 759460856 759461418 0.000000e+00 723.0
16 TraesCS2D01G560000 chr2A 87.125 567 68 2 162 727 759460770 759461332 6.510000e-179 638.0
17 TraesCS2D01G560000 chr2A 87.479 583 27 15 2654 3209 759463236 759463799 1.090000e-176 630.0
18 TraesCS2D01G560000 chr2A 86.265 597 49 14 5381 5954 759465955 759466541 8.480000e-173 617.0
19 TraesCS2D01G560000 chr2A 96.324 272 5 2 4937 5203 759465672 759465943 5.480000e-120 442.0
20 TraesCS2D01G560000 chr2A 86.250 80 9 2 5313 5391 583841178 583841100 1.060000e-12 86.1
21 TraesCS2D01G560000 chr2A 90.909 55 5 0 5900 5954 759466420 759466474 2.300000e-09 75.0
22 TraesCS2D01G560000 chr3B 81.061 132 17 4 5256 5380 559885393 559885263 1.370000e-16 99.0
23 TraesCS2D01G560000 chr1B 79.545 132 19 4 5257 5381 464137893 464138023 2.960000e-13 87.9
24 TraesCS2D01G560000 chr1B 88.571 70 6 2 5313 5381 452304172 452304104 3.820000e-12 84.2
25 TraesCS2D01G560000 chr5A 93.103 58 3 1 5325 5381 355160645 355160702 3.820000e-12 84.2
26 TraesCS2D01G560000 chr1D 78.358 134 19 7 5256 5381 299263103 299262972 1.780000e-10 78.7
27 TraesCS2D01G560000 chr1D 91.071 56 4 1 5326 5380 97313625 97313570 2.300000e-09 75.0
28 TraesCS2D01G560000 chr5B 88.889 63 5 2 5313 5374 313069214 313069153 6.400000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G560000 chr2D 632977558 632983511 5953 True 3256.750000 10996 91.828500 1 5954 4 chr2D.!!$R1 5953
1 TraesCS2D01G560000 chr2B 776218174 776222961 4787 False 3916.000000 7047 92.915500 1 4947 2 chr2B.!!$F3 4946
2 TraesCS2D01G560000 chr2B 776230869 776232145 1276 False 325.500000 449 90.914500 4966 5920 2 chr2B.!!$F5 954
3 TraesCS2D01G560000 chr2A 759460694 759466541 5847 False 1015.555556 3616 90.568111 1 5954 9 chr2A.!!$F1 5953

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
679 770 0.027979 CGCACGATACCTGGCAATTG 59.972 55.0 0.00 0.0 0.00 2.32 F
2040 2221 0.231279 GTACAACGTCAACAGCACGG 59.769 55.0 0.00 0.0 41.73 4.94 F
3669 4001 0.384669 CGTAGCTAGGTGCCCACTAC 59.615 60.0 4.27 0.0 44.23 2.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2158 2339 1.045407 AACACTGTAAGGGCTCGTCA 58.955 50.0 0.0 0.0 45.89 4.35 R
3915 4268 0.032678 ACTCTCCAACACTGCGACTG 59.967 55.0 0.0 0.0 0.00 3.51 R
5554 6236 0.107214 ATGAACCACCGCAATCCGAT 60.107 50.0 0.0 0.0 40.02 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 4.159108 AGGGGGAGGGACTAGGCG 62.159 72.222 0.00 0.00 41.55 5.52
58 61 0.030399 ACCCCCTATTCCTTAGGCGT 60.030 55.000 0.00 0.00 45.55 5.68
113 118 6.642707 AGAGAAAGATCCGATAATCTTCGT 57.357 37.500 7.74 0.87 43.53 3.85
122 127 1.852895 GATAATCTTCGTGCGCTTCGT 59.147 47.619 20.35 7.76 0.00 3.85
190 195 9.677567 CTCTTTAGATTTAGAGAAAGATCCGAG 57.322 37.037 0.00 0.00 40.24 4.63
208 213 2.789203 GAATCTTCGCGCGCTTCGT 61.789 57.895 30.48 10.15 41.07 3.85
336 427 7.532571 CCGTACGATATATACCTGACAATTCA 58.467 38.462 18.76 0.00 0.00 2.57
337 428 8.188799 CCGTACGATATATACCTGACAATTCAT 58.811 37.037 18.76 0.00 0.00 2.57
350 441 9.965902 ACCTGACAATTCATAACTCTTTAGATT 57.034 29.630 0.00 0.00 0.00 2.40
364 455 7.419204 ACTCTTTAGATTTAGAGAACGATCCG 58.581 38.462 6.15 0.00 40.24 4.18
365 456 7.282675 ACTCTTTAGATTTAGAGAACGATCCGA 59.717 37.037 6.15 0.00 40.24 4.55
366 457 8.167605 TCTTTAGATTTAGAGAACGATCCGAT 57.832 34.615 0.00 0.00 0.00 4.18
367 458 9.281371 TCTTTAGATTTAGAGAACGATCCGATA 57.719 33.333 0.00 0.00 0.00 2.92
368 459 9.894783 CTTTAGATTTAGAGAACGATCCGATAA 57.105 33.333 0.00 0.00 0.00 1.75
371 462 8.749841 AGATTTAGAGAACGATCCGATAAATG 57.250 34.615 10.21 0.00 0.00 2.32
372 463 8.361139 AGATTTAGAGAACGATCCGATAAATGT 58.639 33.333 10.21 5.82 0.00 2.71
373 464 7.925703 TTTAGAGAACGATCCGATAAATGTC 57.074 36.000 0.00 0.00 0.00 3.06
374 465 4.537965 AGAGAACGATCCGATAAATGTCG 58.462 43.478 0.00 0.00 41.13 4.35
375 466 3.050619 AGAACGATCCGATAAATGTCGC 58.949 45.455 0.00 0.00 40.17 5.19
376 467 1.405461 ACGATCCGATAAATGTCGCG 58.595 50.000 0.00 0.00 40.17 5.87
377 468 0.091344 CGATCCGATAAATGTCGCGC 59.909 55.000 0.00 0.00 40.17 6.86
378 469 0.091344 GATCCGATAAATGTCGCGCG 59.909 55.000 26.76 26.76 40.17 6.86
379 470 1.886861 ATCCGATAAATGTCGCGCGC 61.887 55.000 27.95 23.91 40.17 6.86
380 471 2.585869 CCGATAAATGTCGCGCGCT 61.586 57.895 30.48 11.93 40.17 5.92
381 472 1.272715 CGATAAATGTCGCGCGCTT 59.727 52.632 30.48 18.44 34.56 4.68
382 473 0.714996 CGATAAATGTCGCGCGCTTC 60.715 55.000 30.48 21.15 34.56 3.86
383 474 0.714996 GATAAATGTCGCGCGCTTCG 60.715 55.000 30.48 14.31 42.12 3.79
394 485 3.966215 CGCTTCGCCTTCCTTCAA 58.034 55.556 0.00 0.00 0.00 2.69
395 486 1.497722 CGCTTCGCCTTCCTTCAAC 59.502 57.895 0.00 0.00 0.00 3.18
396 487 1.497722 GCTTCGCCTTCCTTCAACG 59.502 57.895 0.00 0.00 0.00 4.10
397 488 1.912371 GCTTCGCCTTCCTTCAACGG 61.912 60.000 0.00 0.00 0.00 4.44
398 489 0.602905 CTTCGCCTTCCTTCAACGGT 60.603 55.000 0.00 0.00 0.00 4.83
399 490 0.882927 TTCGCCTTCCTTCAACGGTG 60.883 55.000 0.00 0.00 0.00 4.94
400 491 2.325082 CGCCTTCCTTCAACGGTGG 61.325 63.158 0.00 0.00 0.00 4.61
401 492 2.626780 GCCTTCCTTCAACGGTGGC 61.627 63.158 0.00 0.00 37.50 5.01
402 493 1.971695 CCTTCCTTCAACGGTGGCC 60.972 63.158 0.00 0.00 0.00 5.36
412 503 3.036084 CGGTGGCCGTGCGATATC 61.036 66.667 0.00 0.00 42.73 1.63
413 504 2.421739 GGTGGCCGTGCGATATCT 59.578 61.111 0.00 0.00 0.00 1.98
414 505 1.956170 GGTGGCCGTGCGATATCTG 60.956 63.158 0.00 0.00 0.00 2.90
415 506 1.956170 GTGGCCGTGCGATATCTGG 60.956 63.158 0.00 0.00 0.00 3.86
416 507 3.044305 GGCCGTGCGATATCTGGC 61.044 66.667 13.61 13.61 44.98 4.85
417 508 2.280119 GCCGTGCGATATCTGGCA 60.280 61.111 15.87 9.84 45.06 4.92
418 509 1.887242 GCCGTGCGATATCTGGCAA 60.887 57.895 15.87 0.00 45.06 4.52
419 510 1.230635 GCCGTGCGATATCTGGCAAT 61.231 55.000 15.87 0.00 45.06 3.56
420 511 1.229428 CCGTGCGATATCTGGCAATT 58.771 50.000 6.84 0.00 41.46 2.32
421 512 1.195448 CCGTGCGATATCTGGCAATTC 59.805 52.381 6.84 0.00 41.46 2.17
462 553 2.572191 ACGATCCGATAAACTTCGCA 57.428 45.000 0.00 0.00 37.80 5.10
507 598 1.574134 CGTACGATACCCGGCAATTT 58.426 50.000 10.44 0.00 43.93 1.82
515 606 1.541379 ACCCGGCAATTTGTAACTCC 58.459 50.000 0.00 0.00 0.00 3.85
566 657 3.966215 CGCTTCGCCTTCCTTCAA 58.034 55.556 0.00 0.00 0.00 2.69
567 658 1.497722 CGCTTCGCCTTCCTTCAAC 59.502 57.895 0.00 0.00 0.00 3.18
568 659 1.497722 GCTTCGCCTTCCTTCAACG 59.502 57.895 0.00 0.00 0.00 4.10
569 660 1.912371 GCTTCGCCTTCCTTCAACGG 61.912 60.000 0.00 0.00 0.00 4.44
570 661 0.602905 CTTCGCCTTCCTTCAACGGT 60.603 55.000 0.00 0.00 0.00 4.83
571 662 0.882927 TTCGCCTTCCTTCAACGGTG 60.883 55.000 0.00 0.00 0.00 4.94
572 663 2.325082 CGCCTTCCTTCAACGGTGG 61.325 63.158 0.00 0.00 0.00 4.61
573 664 2.626780 GCCTTCCTTCAACGGTGGC 61.627 63.158 0.00 0.00 37.50 5.01
574 665 1.971695 CCTTCCTTCAACGGTGGCC 60.972 63.158 0.00 0.00 0.00 5.36
584 675 2.026590 CGGTGGCCGTACGATACC 59.973 66.667 18.76 19.03 42.73 2.73
585 676 2.418777 GGTGGCCGTACGATACCC 59.581 66.667 18.76 11.61 0.00 3.69
586 677 2.026590 GTGGCCGTACGATACCCG 59.973 66.667 18.76 0.00 45.44 5.28
587 678 3.218470 TGGCCGTACGATACCCGG 61.218 66.667 18.76 0.00 43.93 5.73
590 681 2.806929 CCGTACGATACCCGGCAA 59.193 61.111 18.76 0.00 43.93 4.52
591 682 1.364901 CCGTACGATACCCGGCAAT 59.635 57.895 18.76 0.00 43.93 3.56
592 683 0.249573 CCGTACGATACCCGGCAATT 60.250 55.000 18.76 0.00 43.93 2.32
593 684 1.574134 CGTACGATACCCGGCAATTT 58.426 50.000 10.44 0.00 43.93 1.82
594 685 1.259507 CGTACGATACCCGGCAATTTG 59.740 52.381 10.44 0.00 43.93 2.32
595 686 2.282407 GTACGATACCCGGCAATTTGT 58.718 47.619 0.00 0.00 43.93 2.83
596 687 2.695127 ACGATACCCGGCAATTTGTA 57.305 45.000 0.00 0.00 43.93 2.41
597 688 2.988570 ACGATACCCGGCAATTTGTAA 58.011 42.857 0.00 0.00 43.93 2.41
598 689 2.679336 ACGATACCCGGCAATTTGTAAC 59.321 45.455 0.00 0.00 43.93 2.50
599 690 2.940410 CGATACCCGGCAATTTGTAACT 59.060 45.455 0.00 0.00 33.91 2.24
600 691 3.001939 CGATACCCGGCAATTTGTAACTC 59.998 47.826 0.00 0.00 33.91 3.01
601 692 1.541379 ACCCGGCAATTTGTAACTCC 58.459 50.000 0.00 0.00 0.00 3.85
607 698 4.881850 CCGGCAATTTGTAACTCCTTAGAT 59.118 41.667 0.00 0.00 0.00 1.98
634 725 3.132289 AGAAAGGTCCGATAATCTTCGCA 59.868 43.478 0.00 0.00 37.80 5.10
642 733 2.117137 GATAATCTTCGCACGCTTCGA 58.883 47.619 0.00 0.00 0.00 3.71
654 745 2.798283 CACGCTTCGACTTCCTTTAACA 59.202 45.455 0.00 0.00 0.00 2.41
679 770 0.027979 CGCACGATACCTGGCAATTG 59.972 55.000 0.00 0.00 0.00 2.32
680 771 1.094785 GCACGATACCTGGCAATTGT 58.905 50.000 7.40 0.00 0.00 2.71
721 899 3.932545 AGATCTGATAATCTTCGCGCT 57.067 42.857 5.56 0.00 31.89 5.92
854 1032 0.894835 CCCATTTCCCTTGTTTCCCG 59.105 55.000 0.00 0.00 0.00 5.14
877 1056 2.043652 CCATTGTGGCTCCCCCTG 60.044 66.667 0.00 0.00 0.00 4.45
1268 1447 1.000019 AGCGCCAGTACCAGGAGTA 60.000 57.895 2.29 0.00 0.00 2.59
1499 1678 1.993370 GTTTTCTCCGTGATCTGTCCG 59.007 52.381 0.00 0.00 0.00 4.79
1759 1939 0.811281 CAGGCCGGACTTTCCATTTC 59.189 55.000 7.41 0.00 35.91 2.17
1835 2016 7.229707 AGCTAGTTCTTCCTTTCCTTTTCTTTC 59.770 37.037 0.00 0.00 0.00 2.62
2040 2221 0.231279 GTACAACGTCAACAGCACGG 59.769 55.000 0.00 0.00 41.73 4.94
2158 2339 3.434319 CAACTTCATGCCGCCGCT 61.434 61.111 0.00 0.00 35.36 5.52
2207 2394 1.822613 CATACAGCAGCAGCAGGGG 60.823 63.158 3.17 0.00 45.49 4.79
2244 2431 9.283768 CTATCACCTACAATGCCAACAATAATA 57.716 33.333 0.00 0.00 0.00 0.98
2245 2432 7.946381 TCACCTACAATGCCAACAATAATAA 57.054 32.000 0.00 0.00 0.00 1.40
2246 2433 8.532186 TCACCTACAATGCCAACAATAATAAT 57.468 30.769 0.00 0.00 0.00 1.28
2358 2545 3.023119 TGCTGTGTGGATCTGTTTTGTT 58.977 40.909 0.00 0.00 0.00 2.83
2424 2612 9.634021 TTGATAATATGCAAGGGTTATGTACAA 57.366 29.630 0.00 0.00 0.00 2.41
2502 2693 2.365293 CCAGCAACTTTGTAAGGGCTTT 59.635 45.455 5.48 0.00 40.00 3.51
2517 2708 6.966534 AAGGGCTTTCTTTATGATGGTATG 57.033 37.500 0.00 0.00 0.00 2.39
2557 2748 9.541143 ACAAATTTTCTAAAACGATTTGTCCAT 57.459 25.926 10.42 0.00 35.43 3.41
2640 2831 6.715344 ACTTTGCATAGACAAAATTGCATG 57.285 33.333 11.39 0.00 43.91 4.06
2738 2957 3.366374 GCAGGCTTTGTATCCAACTTCAC 60.366 47.826 0.00 0.00 0.00 3.18
2912 3135 4.338879 ACAGCTAGGAAACATGCAAATCT 58.661 39.130 0.00 0.00 34.04 2.40
2913 3136 4.768968 ACAGCTAGGAAACATGCAAATCTT 59.231 37.500 0.00 0.00 34.04 2.40
2914 3137 5.244626 ACAGCTAGGAAACATGCAAATCTTT 59.755 36.000 0.00 0.00 34.04 2.52
2915 3138 6.161381 CAGCTAGGAAACATGCAAATCTTTT 58.839 36.000 0.00 0.00 34.04 2.27
2918 3141 9.189156 AGCTAGGAAACATGCAAATCTTTTATA 57.811 29.630 0.00 0.00 34.04 0.98
2969 3204 1.153901 GCACACACCTGATGCATGC 60.154 57.895 11.82 11.82 39.23 4.06
2970 3205 1.509463 CACACACCTGATGCATGCC 59.491 57.895 16.68 0.28 0.00 4.40
2971 3206 0.963856 CACACACCTGATGCATGCCT 60.964 55.000 16.68 4.84 0.00 4.75
2972 3207 0.963856 ACACACCTGATGCATGCCTG 60.964 55.000 16.68 4.54 0.00 4.85
2973 3208 0.963856 CACACCTGATGCATGCCTGT 60.964 55.000 16.68 0.38 0.00 4.00
2974 3209 0.963856 ACACCTGATGCATGCCTGTG 60.964 55.000 16.68 16.18 0.00 3.66
2975 3210 0.678684 CACCTGATGCATGCCTGTGA 60.679 55.000 16.68 0.00 0.00 3.58
3066 3319 2.999063 GCAACCAGGCCCAGCAAT 60.999 61.111 0.00 0.00 0.00 3.56
3325 3640 5.818678 TTGGTTCCAGCTTTAGACTCTTA 57.181 39.130 0.00 0.00 0.00 2.10
3471 3803 4.641989 ACATCCAAAGCTGAACCACATATC 59.358 41.667 0.00 0.00 0.00 1.63
3527 3859 4.702131 GCATTCCCACTGAACTAACTTGAT 59.298 41.667 0.00 0.00 35.31 2.57
3538 3870 7.556275 ACTGAACTAACTTGATTTTGTTCCTGA 59.444 33.333 0.00 0.00 34.40 3.86
3603 3935 2.174639 TGTGTGGAAGGAGTTGACCAAT 59.825 45.455 0.00 0.00 34.11 3.16
3649 3981 2.157834 TGTAGTGCCAAAGGTACGTG 57.842 50.000 0.00 0.00 43.03 4.49
3667 3999 3.617368 CGTAGCTAGGTGCCCACT 58.383 61.111 4.27 0.00 44.23 4.00
3668 4000 2.803203 CGTAGCTAGGTGCCCACTA 58.197 57.895 4.27 0.00 44.23 2.74
3669 4001 0.384669 CGTAGCTAGGTGCCCACTAC 59.615 60.000 4.27 0.00 44.23 2.73
3912 4265 5.579718 CGACAACTCCGTAAATCATAGTCT 58.420 41.667 0.00 0.00 0.00 3.24
3913 4266 5.681982 CGACAACTCCGTAAATCATAGTCTC 59.318 44.000 0.00 0.00 0.00 3.36
3914 4267 5.579718 ACAACTCCGTAAATCATAGTCTCG 58.420 41.667 0.00 0.00 0.00 4.04
3915 4268 4.226113 ACTCCGTAAATCATAGTCTCGC 57.774 45.455 0.00 0.00 0.00 5.03
3916 4269 3.630769 ACTCCGTAAATCATAGTCTCGCA 59.369 43.478 0.00 0.00 0.00 5.10
3917 4270 4.222886 CTCCGTAAATCATAGTCTCGCAG 58.777 47.826 0.00 0.00 0.00 5.18
4037 4397 1.168714 GGCCTAACAACAAGAGCAGG 58.831 55.000 0.00 0.00 0.00 4.85
4082 4442 5.299782 TGGTATGTTGGTTTTAACACTGACC 59.700 40.000 0.00 0.00 42.74 4.02
4099 4459 3.973657 TGACCGACTCAAGTAAACACTC 58.026 45.455 0.00 0.00 0.00 3.51
4126 4486 9.891828 CAAACATTTGTAAGTATGTACATGTGT 57.108 29.630 18.81 5.52 35.32 3.72
4128 4488 7.959733 ACATTTGTAAGTATGTACATGTGTCG 58.040 34.615 18.81 0.00 34.05 4.35
4222 4582 5.416952 CACCTTCATCATCTACAAAAGCCTT 59.583 40.000 0.00 0.00 0.00 4.35
4341 4705 2.715005 CTCGCCAGCTCTCTCGAG 59.285 66.667 5.93 5.93 41.66 4.04
4343 4707 1.153066 TCGCCAGCTCTCTCGAGAT 60.153 57.895 17.03 0.00 39.74 2.75
4344 4708 0.106894 TCGCCAGCTCTCTCGAGATA 59.893 55.000 17.03 8.09 39.74 1.98
4345 4709 0.237235 CGCCAGCTCTCTCGAGATAC 59.763 60.000 17.03 8.44 39.74 2.24
4346 4710 1.604604 GCCAGCTCTCTCGAGATACT 58.395 55.000 17.03 10.70 39.74 2.12
4347 4711 2.773487 GCCAGCTCTCTCGAGATACTA 58.227 52.381 17.03 1.24 39.74 1.82
4349 4713 3.805807 GCCAGCTCTCTCGAGATACTACT 60.806 52.174 17.03 6.67 39.74 2.57
4350 4714 4.561938 GCCAGCTCTCTCGAGATACTACTA 60.562 50.000 17.03 0.00 39.74 1.82
4352 4716 6.628621 GCCAGCTCTCTCGAGATACTACTATA 60.629 46.154 17.03 0.00 39.74 1.31
4448 4858 6.492007 TCTTTTTGTCATCTCTTGATCAGC 57.508 37.500 0.00 0.00 36.54 4.26
4481 4891 3.497884 AAGGTGACTGGGCAGTGCC 62.498 63.158 26.87 26.87 45.43 5.01
4522 4932 2.036256 AAGGAGCAAGGCCGCATT 59.964 55.556 5.37 0.00 0.00 3.56
4582 4996 4.641989 GCCAAGAAAAGAAGATAGATGCCA 59.358 41.667 0.00 0.00 0.00 4.92
4678 5106 4.405358 ACAAAATCAAGGAACAGCCAGAAA 59.595 37.500 0.00 0.00 40.02 2.52
4687 5115 0.035317 ACAGCCAGAAAGCATCGTCA 59.965 50.000 0.00 0.00 34.23 4.35
4826 5267 5.011943 CCCATCCAAGAAAAACATCTTTCCA 59.988 40.000 0.00 0.00 37.56 3.53
4983 5454 6.869913 CCATTTGTAGCATGTCTTGATGTTTT 59.130 34.615 0.00 0.00 0.00 2.43
5023 5494 5.689383 TTTGTCAACAGAACTAATGAGGC 57.311 39.130 0.00 0.00 0.00 4.70
5228 5711 4.019231 AGGAGTTACCCCTCAAATTGAGTC 60.019 45.833 20.18 9.91 38.38 3.36
5252 5736 2.094597 TCTTGCCCAATTTGAGCAATCG 60.095 45.455 17.17 8.30 44.84 3.34
5253 5737 0.108709 TGCCCAATTTGAGCAATCGC 60.109 50.000 2.80 0.00 32.56 4.58
5254 5738 0.807275 GCCCAATTTGAGCAATCGCC 60.807 55.000 0.00 0.00 39.83 5.54
5255 5739 0.531657 CCCAATTTGAGCAATCGCCA 59.468 50.000 0.00 0.00 39.83 5.69
5256 5740 1.067000 CCCAATTTGAGCAATCGCCAA 60.067 47.619 0.00 0.00 39.83 4.52
5257 5741 2.612471 CCCAATTTGAGCAATCGCCAAA 60.612 45.455 0.00 0.00 40.32 3.28
5258 5742 3.264104 CCAATTTGAGCAATCGCCAAAT 58.736 40.909 0.00 0.00 44.16 2.32
5260 5744 4.869297 CCAATTTGAGCAATCGCCAAATAA 59.131 37.500 11.58 0.00 42.81 1.40
5261 5745 5.350914 CCAATTTGAGCAATCGCCAAATAAA 59.649 36.000 11.58 0.00 42.81 1.40
5263 5747 6.592798 ATTTGAGCAATCGCCAAATAAATG 57.407 33.333 10.26 0.00 42.32 2.32
5264 5748 4.044336 TGAGCAATCGCCAAATAAATGG 57.956 40.909 0.00 0.00 43.70 3.16
5265 5749 3.698539 TGAGCAATCGCCAAATAAATGGA 59.301 39.130 0.00 0.00 43.54 3.41
5266 5750 4.159321 TGAGCAATCGCCAAATAAATGGAA 59.841 37.500 0.00 0.00 43.54 3.53
5267 5751 4.685924 AGCAATCGCCAAATAAATGGAAG 58.314 39.130 0.00 0.00 43.54 3.46
5268 5752 3.245990 GCAATCGCCAAATAAATGGAAGC 59.754 43.478 0.00 0.00 43.54 3.86
5269 5753 4.431809 CAATCGCCAAATAAATGGAAGCA 58.568 39.130 0.00 0.00 43.54 3.91
5270 5754 3.502191 TCGCCAAATAAATGGAAGCAC 57.498 42.857 0.00 0.00 43.54 4.40
5271 5755 2.159448 TCGCCAAATAAATGGAAGCACG 60.159 45.455 0.00 0.00 43.54 5.34
5272 5756 2.159448 CGCCAAATAAATGGAAGCACGA 60.159 45.455 0.00 0.00 43.54 4.35
5273 5757 3.671971 CGCCAAATAAATGGAAGCACGAA 60.672 43.478 0.00 0.00 43.54 3.85
5274 5758 3.859386 GCCAAATAAATGGAAGCACGAAG 59.141 43.478 0.00 0.00 43.54 3.79
5275 5759 4.618227 GCCAAATAAATGGAAGCACGAAGT 60.618 41.667 0.00 0.00 43.04 3.01
5277 5761 5.345741 CCAAATAAATGGAAGCACGAAGTTG 59.654 40.000 0.00 0.00 40.78 3.16
5278 5762 2.422276 AAATGGAAGCACGAAGTTGC 57.578 45.000 0.00 0.00 41.61 4.17
5280 5764 0.537143 ATGGAAGCACGAAGTTGCCA 60.537 50.000 0.00 0.00 41.61 4.92
5281 5765 0.537143 TGGAAGCACGAAGTTGCCAT 60.537 50.000 0.00 0.00 41.61 4.40
5282 5766 0.109597 GGAAGCACGAAGTTGCCATG 60.110 55.000 0.00 0.00 41.61 3.66
5284 5768 1.601759 AGCACGAAGTTGCCATGCT 60.602 52.632 0.00 0.00 41.61 3.79
5287 5771 1.005294 CACGAAGTTGCCATGCTTGC 61.005 55.000 0.00 0.00 41.61 4.01
5288 5772 1.174712 ACGAAGTTGCCATGCTTGCT 61.175 50.000 0.00 0.00 37.78 3.91
5291 5775 2.540361 CGAAGTTGCCATGCTTGCTATC 60.540 50.000 0.00 0.00 0.00 2.08
5292 5776 2.431954 AGTTGCCATGCTTGCTATCT 57.568 45.000 0.00 0.00 0.00 1.98
5293 5777 3.565764 AGTTGCCATGCTTGCTATCTA 57.434 42.857 0.00 0.00 0.00 1.98
5294 5778 3.889815 AGTTGCCATGCTTGCTATCTAA 58.110 40.909 0.00 0.00 0.00 2.10
5295 5779 4.272489 AGTTGCCATGCTTGCTATCTAAA 58.728 39.130 0.00 0.00 0.00 1.85
5296 5780 4.337555 AGTTGCCATGCTTGCTATCTAAAG 59.662 41.667 0.00 0.00 0.00 1.85
5298 5782 4.272489 TGCCATGCTTGCTATCTAAAGTT 58.728 39.130 0.00 0.00 0.00 2.66
5299 5783 4.096833 TGCCATGCTTGCTATCTAAAGTTG 59.903 41.667 0.00 0.00 0.00 3.16
5302 5786 3.684908 TGCTTGCTATCTAAAGTTGCCA 58.315 40.909 0.00 0.00 0.00 4.92
5303 5787 4.078537 TGCTTGCTATCTAAAGTTGCCAA 58.921 39.130 0.00 0.00 0.00 4.52
5304 5788 4.082787 TGCTTGCTATCTAAAGTTGCCAAC 60.083 41.667 0.00 0.00 0.00 3.77
5305 5789 4.675408 GCTTGCTATCTAAAGTTGCCAACC 60.675 45.833 3.45 0.00 0.00 3.77
5306 5790 4.301072 TGCTATCTAAAGTTGCCAACCT 57.699 40.909 3.45 0.00 0.00 3.50
5307 5791 4.662278 TGCTATCTAAAGTTGCCAACCTT 58.338 39.130 3.45 0.00 0.00 3.50
5308 5792 4.458989 TGCTATCTAAAGTTGCCAACCTTG 59.541 41.667 3.45 0.00 0.00 3.61
5309 5793 3.942130 ATCTAAAGTTGCCAACCTTGC 57.058 42.857 3.45 0.00 0.00 4.01
5310 5794 1.606668 TCTAAAGTTGCCAACCTTGCG 59.393 47.619 3.45 0.00 0.00 4.85
5311 5795 1.336755 CTAAAGTTGCCAACCTTGCGT 59.663 47.619 3.45 0.00 0.00 5.24
5312 5796 1.394618 AAAGTTGCCAACCTTGCGTA 58.605 45.000 3.45 0.00 0.00 4.42
5313 5797 1.394618 AAGTTGCCAACCTTGCGTAA 58.605 45.000 3.45 0.00 0.00 3.18
5314 5798 0.666374 AGTTGCCAACCTTGCGTAAC 59.334 50.000 3.45 0.00 0.00 2.50
5315 5799 0.666374 GTTGCCAACCTTGCGTAACT 59.334 50.000 0.00 0.00 0.00 2.24
5318 5802 0.666374 GCCAACCTTGCGTAACTTGT 59.334 50.000 0.00 0.00 0.00 3.16
5320 5804 1.944024 CCAACCTTGCGTAACTTGTCA 59.056 47.619 0.00 0.00 0.00 3.58
5322 5806 3.749088 CCAACCTTGCGTAACTTGTCATA 59.251 43.478 0.00 0.00 0.00 2.15
5323 5807 4.214545 CCAACCTTGCGTAACTTGTCATAA 59.785 41.667 0.00 0.00 0.00 1.90
5324 5808 5.278071 CCAACCTTGCGTAACTTGTCATAAA 60.278 40.000 0.00 0.00 0.00 1.40
5325 5809 6.202937 CAACCTTGCGTAACTTGTCATAAAA 58.797 36.000 0.00 0.00 0.00 1.52
5326 5810 6.380095 ACCTTGCGTAACTTGTCATAAAAA 57.620 33.333 0.00 0.00 0.00 1.94
5342 5826 3.930400 AAAAACGTTCGGAGTTGCC 57.070 47.368 0.00 0.00 31.43 4.52
5343 5827 1.096416 AAAAACGTTCGGAGTTGCCA 58.904 45.000 0.00 0.00 35.94 4.92
5344 5828 1.314730 AAAACGTTCGGAGTTGCCAT 58.685 45.000 0.00 0.00 35.94 4.40
5345 5829 0.591170 AAACGTTCGGAGTTGCCATG 59.409 50.000 0.00 0.00 35.94 3.66
5348 5832 1.210155 GTTCGGAGTTGCCATGTGC 59.790 57.895 0.00 0.00 41.77 4.57
5349 5833 1.073025 TTCGGAGTTGCCATGTGCT 59.927 52.632 7.54 0.00 42.00 4.40
5350 5834 0.955428 TTCGGAGTTGCCATGTGCTC 60.955 55.000 7.54 2.19 42.00 4.26
5353 5837 0.391130 GGAGTTGCCATGTGCTCGTA 60.391 55.000 7.54 0.00 42.00 3.43
5355 5839 0.673644 AGTTGCCATGTGCTCGTACC 60.674 55.000 7.54 0.00 42.00 3.34
5358 5842 1.218047 GCCATGTGCTCGTACCTGA 59.782 57.895 0.00 0.00 36.87 3.86
5360 5844 0.532573 CCATGTGCTCGTACCTGACT 59.467 55.000 0.00 0.00 0.00 3.41
5361 5845 1.066858 CCATGTGCTCGTACCTGACTT 60.067 52.381 0.00 0.00 0.00 3.01
5362 5846 1.995484 CATGTGCTCGTACCTGACTTG 59.005 52.381 0.00 0.00 0.00 3.16
5364 5848 1.269569 TGTGCTCGTACCTGACTTGTG 60.270 52.381 0.00 0.00 0.00 3.33
5366 5850 0.319555 GCTCGTACCTGACTTGTGCA 60.320 55.000 0.00 0.00 0.00 4.57
5368 5852 1.000163 CTCGTACCTGACTTGTGCACT 60.000 52.381 19.41 0.00 0.00 4.40
5370 5854 2.624364 TCGTACCTGACTTGTGCACTTA 59.376 45.455 19.41 5.21 0.00 2.24
5371 5855 3.257375 TCGTACCTGACTTGTGCACTTAT 59.743 43.478 19.41 2.40 0.00 1.73
5373 5857 3.769739 ACCTGACTTGTGCACTTATCA 57.230 42.857 19.41 16.22 0.00 2.15
5376 5860 3.438087 CCTGACTTGTGCACTTATCAAGG 59.562 47.826 19.41 13.50 41.64 3.61
5377 5861 4.067896 CTGACTTGTGCACTTATCAAGGT 58.932 43.478 19.41 2.44 41.64 3.50
5378 5862 4.065088 TGACTTGTGCACTTATCAAGGTC 58.935 43.478 19.41 12.53 41.64 3.85
5489 6171 0.602372 GCTCCTTGATCGCCTCATCC 60.602 60.000 0.00 0.00 32.72 3.51
5501 6183 4.802051 TCATCCCCAGCTTGCGCC 62.802 66.667 4.18 0.00 36.60 6.53
5528 6210 2.278923 GCTCTTCGCTCTACCGGC 60.279 66.667 0.00 0.00 35.14 6.13
5554 6236 1.565390 AATCCAGCTAGCTGTGGGCA 61.565 55.000 36.14 18.66 44.79 5.36
5564 6246 2.823593 TGTGGGCATCGGATTGCG 60.824 61.111 0.00 0.00 43.71 4.85
5566 6248 4.108299 TGGGCATCGGATTGCGGT 62.108 61.111 0.00 0.00 43.71 5.68
5573 6255 0.107214 ATCGGATTGCGGTGGTTCAT 60.107 50.000 0.00 0.00 0.00 2.57
5584 6266 2.261361 GGTTCATTGCGGGTTGCC 59.739 61.111 0.00 0.00 45.60 4.52
5600 6282 1.028130 TGCCTCTCTAGAGCATCGTG 58.972 55.000 15.35 0.96 42.67 4.35
5609 6300 1.216444 GAGCATCGTGTCTCAGGCA 59.784 57.895 0.00 0.00 0.00 4.75
5627 6319 1.542915 GCATGCTTTTGAGCTTGGAGA 59.457 47.619 11.37 0.00 39.44 3.71
5646 6338 5.099042 GAGATGTGCTCCTTTTACCCTTA 57.901 43.478 0.00 0.00 37.69 2.69
5649 6341 8.268455 GAGATGTGCTCCTTTTACCCTTAGGT 62.268 46.154 0.00 0.00 43.07 3.08
5663 6355 4.265073 CCCTTAGGTTTGGAGTGAGATTG 58.735 47.826 0.00 0.00 0.00 2.67
5664 6356 4.019321 CCCTTAGGTTTGGAGTGAGATTGA 60.019 45.833 0.00 0.00 0.00 2.57
5665 6357 5.514834 CCCTTAGGTTTGGAGTGAGATTGAA 60.515 44.000 0.00 0.00 0.00 2.69
5666 6358 5.412904 CCTTAGGTTTGGAGTGAGATTGAAC 59.587 44.000 0.00 0.00 0.00 3.18
5671 6363 6.039829 AGGTTTGGAGTGAGATTGAACTTTTC 59.960 38.462 0.00 0.00 0.00 2.29
5741 6601 2.525368 GGGCAGCCTCCTTTCTAAAAA 58.475 47.619 12.43 0.00 0.00 1.94
5768 6628 4.120331 GCCTTGCGGATGTGGTGC 62.120 66.667 0.00 0.00 0.00 5.01
5779 6639 2.636830 GATGTGGTGCAGCTGAATACT 58.363 47.619 20.43 1.21 0.00 2.12
5789 6649 4.162131 TGCAGCTGAATACTGGTAAGATCA 59.838 41.667 20.43 0.00 35.62 2.92
5848 6715 7.633789 TCTCAATAAAAATAGCCTCAGGTTCT 58.366 34.615 0.00 0.00 0.00 3.01
5860 6727 4.815269 CCTCAGGTTCTCTGTAGTTCAAG 58.185 47.826 0.00 0.00 43.76 3.02
5876 6743 5.894807 AGTTCAAGTCATTTTTCACCACTG 58.105 37.500 0.00 0.00 0.00 3.66
5886 6753 8.087750 GTCATTTTTCACCACTGGATTTTATCA 58.912 33.333 0.71 0.00 0.00 2.15
5945 6812 6.289834 TGCAGTTCAAATCATTTTTCACCAT 58.710 32.000 0.00 0.00 0.00 3.55
5947 6814 7.073265 GCAGTTCAAATCATTTTTCACCATTG 58.927 34.615 0.00 0.00 0.00 2.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 0.919710 AATAGGGGGTGTTGGCTCTC 59.080 55.000 0.00 0.00 0.00 3.20
58 61 7.713734 AAGAGTTACAGTACTAGGTATTGCA 57.286 36.000 0.00 0.00 30.51 4.08
113 118 0.249699 TTGAAGGAAGACGAAGCGCA 60.250 50.000 11.47 0.00 0.00 6.09
122 127 0.250295 CTGCCACCGTTGAAGGAAGA 60.250 55.000 0.00 0.00 34.73 2.87
190 195 2.054755 CGAAGCGCGCGAAGATTC 60.055 61.111 37.18 26.59 0.00 2.52
208 213 1.072505 GGCCACCGTTGAAGGAAGA 59.927 57.895 0.00 0.00 34.73 2.87
338 429 7.916450 CGGATCGTTCTCTAAATCTAAAGAGTT 59.084 37.037 0.00 0.00 40.17 3.01
339 430 7.282675 TCGGATCGTTCTCTAAATCTAAAGAGT 59.717 37.037 0.00 0.00 40.17 3.24
340 431 7.640852 TCGGATCGTTCTCTAAATCTAAAGAG 58.359 38.462 0.00 0.00 40.54 2.85
341 432 7.563888 TCGGATCGTTCTCTAAATCTAAAGA 57.436 36.000 0.00 0.00 0.00 2.52
342 433 9.894783 TTATCGGATCGTTCTCTAAATCTAAAG 57.105 33.333 0.00 0.00 0.00 1.85
345 436 9.841880 CATTTATCGGATCGTTCTCTAAATCTA 57.158 33.333 0.00 0.00 0.00 1.98
346 437 8.361139 ACATTTATCGGATCGTTCTCTAAATCT 58.639 33.333 0.00 0.00 0.00 2.40
347 438 8.522178 ACATTTATCGGATCGTTCTCTAAATC 57.478 34.615 0.00 0.00 0.00 2.17
348 439 7.326305 CGACATTTATCGGATCGTTCTCTAAAT 59.674 37.037 0.00 0.00 38.47 1.40
349 440 6.635641 CGACATTTATCGGATCGTTCTCTAAA 59.364 38.462 0.00 0.00 38.47 1.85
350 441 6.140786 CGACATTTATCGGATCGTTCTCTAA 58.859 40.000 0.00 0.00 38.47 2.10
351 442 5.686834 CGACATTTATCGGATCGTTCTCTA 58.313 41.667 0.00 0.00 38.47 2.43
352 443 4.537965 CGACATTTATCGGATCGTTCTCT 58.462 43.478 0.00 0.00 38.47 3.10
353 444 3.119792 GCGACATTTATCGGATCGTTCTC 59.880 47.826 0.00 0.00 42.49 2.87
354 445 3.050619 GCGACATTTATCGGATCGTTCT 58.949 45.455 0.00 0.00 42.49 3.01
355 446 2.160143 CGCGACATTTATCGGATCGTTC 60.160 50.000 0.00 0.00 42.49 3.95
356 447 1.784856 CGCGACATTTATCGGATCGTT 59.215 47.619 0.00 0.00 42.49 3.85
357 448 1.405461 CGCGACATTTATCGGATCGT 58.595 50.000 0.00 0.00 42.49 3.73
358 449 0.091344 GCGCGACATTTATCGGATCG 59.909 55.000 12.10 0.00 42.49 3.69
359 450 0.091344 CGCGCGACATTTATCGGATC 59.909 55.000 28.94 0.00 42.49 3.36
360 451 1.886861 GCGCGCGACATTTATCGGAT 61.887 55.000 37.18 0.00 42.49 4.18
361 452 2.582265 GCGCGCGACATTTATCGGA 61.582 57.895 37.18 0.00 42.49 4.55
362 453 2.089433 AAGCGCGCGACATTTATCGG 62.089 55.000 37.18 0.00 42.49 4.18
363 454 0.714996 GAAGCGCGCGACATTTATCG 60.715 55.000 37.18 1.31 45.09 2.92
364 455 0.714996 CGAAGCGCGCGACATTTATC 60.715 55.000 37.18 17.41 0.00 1.75
365 456 1.272715 CGAAGCGCGCGACATTTAT 59.727 52.632 37.18 10.15 0.00 1.40
366 457 2.692696 CGAAGCGCGCGACATTTA 59.307 55.556 37.18 0.00 0.00 1.40
379 470 0.602905 ACCGTTGAAGGAAGGCGAAG 60.603 55.000 0.00 0.00 34.73 3.79
380 471 0.882927 CACCGTTGAAGGAAGGCGAA 60.883 55.000 0.00 0.00 34.73 4.70
381 472 1.301401 CACCGTTGAAGGAAGGCGA 60.301 57.895 0.00 0.00 34.73 5.54
382 473 2.325082 CCACCGTTGAAGGAAGGCG 61.325 63.158 0.00 0.00 34.73 5.52
383 474 2.626780 GCCACCGTTGAAGGAAGGC 61.627 63.158 5.17 5.17 43.97 4.35
384 475 1.971695 GGCCACCGTTGAAGGAAGG 60.972 63.158 0.00 0.00 34.67 3.46
385 476 2.325082 CGGCCACCGTTGAAGGAAG 61.325 63.158 2.24 0.00 42.73 3.46
386 477 2.281208 CGGCCACCGTTGAAGGAA 60.281 61.111 2.24 0.00 42.73 3.36
396 487 1.956170 CAGATATCGCACGGCCACC 60.956 63.158 2.24 0.00 0.00 4.61
397 488 1.956170 CCAGATATCGCACGGCCAC 60.956 63.158 2.24 0.00 0.00 5.01
398 489 2.421314 CCAGATATCGCACGGCCA 59.579 61.111 2.24 0.00 0.00 5.36
399 490 3.044305 GCCAGATATCGCACGGCC 61.044 66.667 14.13 0.00 36.73 6.13
400 491 1.230635 ATTGCCAGATATCGCACGGC 61.231 55.000 16.80 16.80 43.28 5.68
401 492 1.195448 GAATTGCCAGATATCGCACGG 59.805 52.381 4.95 2.66 33.97 4.94
402 493 1.136529 CGAATTGCCAGATATCGCACG 60.137 52.381 4.95 3.12 33.97 5.34
403 494 1.867233 ACGAATTGCCAGATATCGCAC 59.133 47.619 4.95 0.00 37.03 5.34
404 495 2.238942 ACGAATTGCCAGATATCGCA 57.761 45.000 1.59 1.59 37.03 5.10
405 496 3.741344 AGTTACGAATTGCCAGATATCGC 59.259 43.478 0.00 0.00 37.03 4.58
406 497 5.223382 AGAGTTACGAATTGCCAGATATCG 58.777 41.667 0.00 0.00 39.30 2.92
407 498 7.484035 AAAGAGTTACGAATTGCCAGATATC 57.516 36.000 0.00 0.00 0.00 1.63
408 499 8.421784 TCTAAAGAGTTACGAATTGCCAGATAT 58.578 33.333 0.00 0.00 0.00 1.63
409 500 7.778083 TCTAAAGAGTTACGAATTGCCAGATA 58.222 34.615 0.00 0.00 0.00 1.98
410 501 6.640518 TCTAAAGAGTTACGAATTGCCAGAT 58.359 36.000 0.00 0.00 0.00 2.90
411 502 6.032956 TCTAAAGAGTTACGAATTGCCAGA 57.967 37.500 0.00 0.00 0.00 3.86
412 503 6.910536 ATCTAAAGAGTTACGAATTGCCAG 57.089 37.500 0.00 0.00 0.00 4.85
413 504 7.681939 AAATCTAAAGAGTTACGAATTGCCA 57.318 32.000 0.00 0.00 29.85 4.92
414 505 9.095065 TCTAAATCTAAAGAGTTACGAATTGCC 57.905 33.333 0.00 0.00 34.03 4.52
419 510 9.552114 CGTTCTCTAAATCTAAAGAGTTACGAA 57.448 33.333 16.84 5.40 43.39 3.85
420 511 8.939929 TCGTTCTCTAAATCTAAAGAGTTACGA 58.060 33.333 18.74 18.74 44.89 3.43
421 512 9.719279 ATCGTTCTCTAAATCTAAAGAGTTACG 57.281 33.333 16.21 16.21 42.84 3.18
530 621 1.205657 GCGCGAAGTTTATCGGATCA 58.794 50.000 12.10 0.00 42.93 2.92
557 648 2.325082 CGGCCACCGTTGAAGGAAG 61.325 63.158 2.24 0.00 42.73 3.46
558 649 2.281208 CGGCCACCGTTGAAGGAA 60.281 61.111 2.24 0.00 42.73 3.36
568 659 2.418777 GGGTATCGTACGGCCACC 59.581 66.667 16.52 18.26 0.00 4.61
569 660 2.026590 CGGGTATCGTACGGCCAC 59.973 66.667 16.52 10.48 0.00 5.01
570 661 3.218470 CCGGGTATCGTACGGCCA 61.218 66.667 16.52 0.00 41.23 5.36
574 665 1.259507 CAAATTGCCGGGTATCGTACG 59.740 52.381 9.53 9.53 37.11 3.67
575 666 2.282407 ACAAATTGCCGGGTATCGTAC 58.718 47.619 2.18 0.00 37.11 3.67
576 667 2.695127 ACAAATTGCCGGGTATCGTA 57.305 45.000 2.18 0.00 37.11 3.43
577 668 2.679336 GTTACAAATTGCCGGGTATCGT 59.321 45.455 2.18 0.00 37.11 3.73
578 669 2.940410 AGTTACAAATTGCCGGGTATCG 59.060 45.455 2.18 0.00 38.88 2.92
579 670 3.314357 GGAGTTACAAATTGCCGGGTATC 59.686 47.826 2.18 0.00 0.00 2.24
580 671 3.053917 AGGAGTTACAAATTGCCGGGTAT 60.054 43.478 2.18 0.00 0.00 2.73
581 672 2.306512 AGGAGTTACAAATTGCCGGGTA 59.693 45.455 2.18 0.00 0.00 3.69
582 673 1.074889 AGGAGTTACAAATTGCCGGGT 59.925 47.619 2.18 0.00 0.00 5.28
583 674 1.834188 AGGAGTTACAAATTGCCGGG 58.166 50.000 2.18 0.00 0.00 5.73
584 675 4.258543 TCTAAGGAGTTACAAATTGCCGG 58.741 43.478 0.00 0.00 0.00 6.13
585 676 6.436843 AATCTAAGGAGTTACAAATTGCCG 57.563 37.500 0.00 0.00 0.00 5.69
586 677 9.174166 TCTAAATCTAAGGAGTTACAAATTGCC 57.826 33.333 0.00 0.00 31.92 4.52
593 684 9.322769 ACCTTTCTCTAAATCTAAGGAGTTACA 57.677 33.333 0.00 0.00 38.92 2.41
594 685 9.806203 GACCTTTCTCTAAATCTAAGGAGTTAC 57.194 37.037 0.00 0.00 38.92 2.50
595 686 8.979534 GGACCTTTCTCTAAATCTAAGGAGTTA 58.020 37.037 0.00 0.00 38.92 2.24
596 687 7.363968 CGGACCTTTCTCTAAATCTAAGGAGTT 60.364 40.741 0.00 0.00 38.92 3.01
597 688 6.097129 CGGACCTTTCTCTAAATCTAAGGAGT 59.903 42.308 0.00 0.00 38.92 3.85
598 689 6.321690 TCGGACCTTTCTCTAAATCTAAGGAG 59.678 42.308 0.00 0.00 38.92 3.69
599 690 6.192773 TCGGACCTTTCTCTAAATCTAAGGA 58.807 40.000 0.00 0.00 38.92 3.36
600 691 6.466885 TCGGACCTTTCTCTAAATCTAAGG 57.533 41.667 0.00 0.00 40.88 2.69
607 698 7.201145 CGAAGATTATCGGACCTTTCTCTAAA 58.799 38.462 0.00 0.00 39.12 1.85
634 725 3.057734 CTGTTAAAGGAAGTCGAAGCGT 58.942 45.455 0.00 0.00 0.00 5.07
642 733 1.892209 CGGCCACTGTTAAAGGAAGT 58.108 50.000 2.24 0.00 0.00 3.01
654 745 3.075005 AGGTATCGTGCGGCCACT 61.075 61.111 2.24 0.00 39.86 4.00
721 899 6.531503 AACATGAGTAGGAGAAATCGAAGA 57.468 37.500 0.00 0.00 45.75 2.87
931 1110 4.360405 TTTTGGAGAGGCGGGGGC 62.360 66.667 0.00 0.00 0.00 5.80
1066 1245 2.742372 GTCGGCCATGTCGTGCTT 60.742 61.111 2.24 0.00 30.45 3.91
1429 1608 1.446907 AGGACGTACGAAGACGATGT 58.553 50.000 24.41 0.00 45.82 3.06
1989 2170 1.187567 CCAAAAACCCCTGCTCCCAG 61.188 60.000 0.00 0.00 38.85 4.45
1990 2171 1.152355 CCAAAAACCCCTGCTCCCA 60.152 57.895 0.00 0.00 0.00 4.37
1991 2172 1.913262 CCCAAAAACCCCTGCTCCC 60.913 63.158 0.00 0.00 0.00 4.30
1992 2173 1.913262 CCCCAAAAACCCCTGCTCC 60.913 63.158 0.00 0.00 0.00 4.70
1993 2174 1.155155 TCCCCAAAAACCCCTGCTC 59.845 57.895 0.00 0.00 0.00 4.26
1994 2175 1.152333 GTCCCCAAAAACCCCTGCT 60.152 57.895 0.00 0.00 0.00 4.24
2040 2221 3.106407 GCAGGCGACAGACACGAC 61.106 66.667 0.00 0.00 39.24 4.34
2073 2254 2.353030 GTTGTTGTTGCCGCGGAC 60.353 61.111 33.48 20.53 0.00 4.79
2081 2262 3.724508 TGGTAGCCATTGTTGTTGTTG 57.275 42.857 0.00 0.00 0.00 3.33
2082 2263 3.894427 TGATGGTAGCCATTGTTGTTGTT 59.106 39.130 1.88 0.00 45.26 2.83
2083 2264 3.495331 TGATGGTAGCCATTGTTGTTGT 58.505 40.909 1.88 0.00 45.26 3.32
2158 2339 1.045407 AACACTGTAAGGGCTCGTCA 58.955 50.000 0.00 0.00 45.89 4.35
2207 2394 1.826385 AGGTGATAGCTTGTTGGTGC 58.174 50.000 0.00 0.00 0.00 5.01
2244 2431 5.513233 ACCTGAATTACCTTGCTGATGATT 58.487 37.500 0.00 0.00 0.00 2.57
2245 2432 5.121380 ACCTGAATTACCTTGCTGATGAT 57.879 39.130 0.00 0.00 0.00 2.45
2246 2433 4.574674 ACCTGAATTACCTTGCTGATGA 57.425 40.909 0.00 0.00 0.00 2.92
2293 2480 4.883585 AGAATGAGAAACACACACACACAT 59.116 37.500 0.00 0.00 0.00 3.21
2294 2481 4.094739 CAGAATGAGAAACACACACACACA 59.905 41.667 0.00 0.00 39.69 3.72
2295 2482 4.094887 ACAGAATGAGAAACACACACACAC 59.905 41.667 0.00 0.00 39.69 3.82
2296 2483 4.260985 ACAGAATGAGAAACACACACACA 58.739 39.130 0.00 0.00 39.69 3.72
2297 2484 4.882671 ACAGAATGAGAAACACACACAC 57.117 40.909 0.00 0.00 39.69 3.82
2298 2485 5.895636 AAACAGAATGAGAAACACACACA 57.104 34.783 0.00 0.00 39.69 3.72
2358 2545 7.230108 ACCCGAGTTATCAGATTCGTAGAATTA 59.770 37.037 2.99 0.00 45.90 1.40
2403 2591 8.532186 TCAATTGTACATAACCCTTGCATATT 57.468 30.769 5.13 0.00 0.00 1.28
2443 2631 8.244802 TGCTAAACTAAACAGCACAAAAACTTA 58.755 29.630 0.00 0.00 40.26 2.24
2502 2693 5.863965 TCGCAATCCATACCATCATAAAGA 58.136 37.500 0.00 0.00 0.00 2.52
2557 2748 6.962182 ACTCAGATTATTTGGAATGAGGACA 58.038 36.000 5.15 0.00 38.74 4.02
2806 3025 2.014857 CTCGTCGAGGTATTGTGGAGA 58.985 52.381 14.68 0.00 0.00 3.71
2969 3204 5.819901 GTCCTGGAAATTAATCTCTCACAGG 59.180 44.000 0.00 6.33 43.19 4.00
2970 3205 5.819901 GGTCCTGGAAATTAATCTCTCACAG 59.180 44.000 0.00 0.00 0.00 3.66
2971 3206 5.339200 GGGTCCTGGAAATTAATCTCTCACA 60.339 44.000 0.00 0.00 0.00 3.58
2972 3207 5.126779 GGGTCCTGGAAATTAATCTCTCAC 58.873 45.833 0.00 0.00 0.00 3.51
2973 3208 4.141711 CGGGTCCTGGAAATTAATCTCTCA 60.142 45.833 0.00 0.00 0.00 3.27
2974 3209 4.381411 CGGGTCCTGGAAATTAATCTCTC 58.619 47.826 0.00 0.00 0.00 3.20
2975 3210 3.433740 GCGGGTCCTGGAAATTAATCTCT 60.434 47.826 0.00 0.00 0.00 3.10
3066 3319 8.439993 TGCATGTTACTTACAGTAGTGAAAAA 57.560 30.769 4.09 0.00 40.83 1.94
3325 3640 2.722094 TCCAGTTGTTTGCAGAACAGT 58.278 42.857 12.17 4.64 0.00 3.55
3471 3803 1.671328 CTGCAGCAACCTGATGATCTG 59.329 52.381 0.00 0.00 41.77 2.90
3538 3870 9.185680 ACAGTTGAACCTCTGTAAATAGTTTTT 57.814 29.630 0.00 0.00 42.13 1.94
3603 3935 9.699410 ATTCTTCCAATATTTCCAACATCACTA 57.301 29.630 0.00 0.00 0.00 2.74
3634 3966 0.945265 TACGCACGTACCTTTGGCAC 60.945 55.000 0.00 0.00 0.00 5.01
3691 4031 7.807680 AGCAGCTAACAAATAGTAACTTTCAC 58.192 34.615 0.00 0.00 33.87 3.18
3914 4267 1.287730 CTCTCCAACACTGCGACTGC 61.288 60.000 0.00 0.00 43.20 4.40
3915 4268 0.032678 ACTCTCCAACACTGCGACTG 59.967 55.000 0.00 0.00 0.00 3.51
3916 4269 0.753262 AACTCTCCAACACTGCGACT 59.247 50.000 0.00 0.00 0.00 4.18
3917 4270 2.433868 TAACTCTCCAACACTGCGAC 57.566 50.000 0.00 0.00 0.00 5.19
3983 4343 2.284263 TCTCGCATCATCAGTGTGAC 57.716 50.000 0.00 0.00 33.04 3.67
3984 4344 3.633986 AGTATCTCGCATCATCAGTGTGA 59.366 43.478 0.00 0.00 35.10 3.58
3985 4345 3.974912 AGTATCTCGCATCATCAGTGTG 58.025 45.455 0.00 0.00 0.00 3.82
3986 4346 4.500545 GGAAGTATCTCGCATCATCAGTGT 60.501 45.833 0.00 0.00 0.00 3.55
4037 4397 6.407202 ACCAGTACTTTCCAAGACATACATC 58.593 40.000 0.00 0.00 0.00 3.06
4082 4442 4.569162 TGTTTGGAGTGTTTACTTGAGTCG 59.431 41.667 0.00 0.00 37.25 4.18
4099 4459 9.340695 CACATGTACATACTTACAAATGTTTGG 57.659 33.333 8.32 0.00 42.34 3.28
4126 4486 5.771469 ACAATGCAATTCATCAGAAAACGA 58.229 33.333 0.00 0.00 37.29 3.85
4127 4487 5.860182 AGACAATGCAATTCATCAGAAAACG 59.140 36.000 0.00 0.00 37.29 3.60
4128 4488 7.647907 AAGACAATGCAATTCATCAGAAAAC 57.352 32.000 0.00 0.00 37.29 2.43
4222 4582 1.801771 CGTACAAATTTGCCGGACTCA 59.198 47.619 18.12 0.00 0.00 3.41
4372 4778 3.599730 TCGAGTGACTTGCAGAATGAT 57.400 42.857 0.00 0.00 39.69 2.45
4448 4858 1.296715 CCTTCTCCCCACGGACAAG 59.703 63.158 0.00 0.00 34.73 3.16
4481 4891 4.036380 GCATTCCGGACAAATTAAGGTAGG 59.964 45.833 1.83 0.00 0.00 3.18
4522 4932 3.130516 TGAACCCGCATTGTTTGTTGTAA 59.869 39.130 0.00 0.00 0.00 2.41
4582 4996 1.558294 TGATGGTGCTGAGCTGAAGAT 59.442 47.619 5.83 0.00 0.00 2.40
4678 5106 1.169577 ACGACTCTCTTGACGATGCT 58.830 50.000 0.00 0.00 0.00 3.79
4687 5115 6.793505 AATTTAGGGTGATACGACTCTCTT 57.206 37.500 0.00 0.00 0.00 2.85
4836 5277 6.952773 ACATGGTGAAGCAAACTTAAGTTA 57.047 33.333 20.83 1.70 37.25 2.24
4898 5345 4.956085 TGAAGTACAACACTACAGCACAT 58.044 39.130 0.00 0.00 36.04 3.21
4983 5454 4.077108 ACAAATTCAGCAGATTCAGAGCA 58.923 39.130 0.00 0.00 0.00 4.26
5023 5494 3.655276 AGTCTGCTGCAAAAAGGATTG 57.345 42.857 3.02 0.00 0.00 2.67
5228 5711 2.358939 GCTCAAATTGGGCAAGAGTG 57.641 50.000 13.71 0.00 45.01 3.51
5252 5736 3.502191 TCGTGCTTCCATTTATTTGGC 57.498 42.857 0.00 0.00 36.66 4.52
5253 5737 5.059404 ACTTCGTGCTTCCATTTATTTGG 57.941 39.130 0.00 0.00 38.18 3.28
5254 5738 5.164061 GCAACTTCGTGCTTCCATTTATTTG 60.164 40.000 0.00 0.00 41.51 2.32
5255 5739 4.923281 GCAACTTCGTGCTTCCATTTATTT 59.077 37.500 0.00 0.00 41.51 1.40
5256 5740 4.485163 GCAACTTCGTGCTTCCATTTATT 58.515 39.130 0.00 0.00 41.51 1.40
5257 5741 3.119495 GGCAACTTCGTGCTTCCATTTAT 60.119 43.478 0.00 0.00 44.31 1.40
5258 5742 2.227865 GGCAACTTCGTGCTTCCATTTA 59.772 45.455 0.00 0.00 44.31 1.40
5260 5744 0.598065 GGCAACTTCGTGCTTCCATT 59.402 50.000 0.00 0.00 44.31 3.16
5261 5745 0.537143 TGGCAACTTCGTGCTTCCAT 60.537 50.000 0.00 0.00 44.31 3.41
5263 5747 0.109597 CATGGCAACTTCGTGCTTCC 60.110 55.000 0.00 0.00 44.31 3.46
5264 5748 0.730494 GCATGGCAACTTCGTGCTTC 60.730 55.000 0.00 0.00 44.31 3.86
5265 5749 1.286880 GCATGGCAACTTCGTGCTT 59.713 52.632 0.00 0.00 44.31 3.91
5266 5750 2.956987 GCATGGCAACTTCGTGCT 59.043 55.556 0.00 0.00 44.31 4.40
5267 5751 1.005294 CAAGCATGGCAACTTCGTGC 61.005 55.000 3.39 1.92 44.82 5.34
5268 5752 1.005294 GCAAGCATGGCAACTTCGTG 61.005 55.000 3.39 0.00 32.79 4.35
5269 5753 1.174712 AGCAAGCATGGCAACTTCGT 61.175 50.000 3.39 0.00 37.68 3.85
5270 5754 0.804364 TAGCAAGCATGGCAACTTCG 59.196 50.000 3.39 2.26 37.68 3.79
5271 5755 2.686915 AGATAGCAAGCATGGCAACTTC 59.313 45.455 3.39 0.75 37.68 3.01
5272 5756 2.731572 AGATAGCAAGCATGGCAACTT 58.268 42.857 0.00 0.00 37.68 2.66
5273 5757 2.431954 AGATAGCAAGCATGGCAACT 57.568 45.000 0.00 0.00 37.68 3.16
5274 5758 4.096984 ACTTTAGATAGCAAGCATGGCAAC 59.903 41.667 0.00 0.00 37.68 4.17
5275 5759 4.272489 ACTTTAGATAGCAAGCATGGCAA 58.728 39.130 0.00 0.00 37.68 4.52
5277 5761 4.604976 CAACTTTAGATAGCAAGCATGGC 58.395 43.478 0.00 0.00 32.57 4.40
5278 5762 4.498682 GGCAACTTTAGATAGCAAGCATGG 60.499 45.833 0.00 0.00 0.00 3.66
5280 5764 4.272489 TGGCAACTTTAGATAGCAAGCAT 58.728 39.130 0.00 0.00 37.61 3.79
5281 5765 3.684908 TGGCAACTTTAGATAGCAAGCA 58.315 40.909 0.00 0.00 37.61 3.91
5282 5766 4.415735 GTTGGCAACTTTAGATAGCAAGC 58.584 43.478 22.66 0.00 37.61 4.01
5284 5768 4.662278 AGGTTGGCAACTTTAGATAGCAA 58.338 39.130 27.77 0.00 37.61 3.91
5287 5771 4.437390 CGCAAGGTTGGCAACTTTAGATAG 60.437 45.833 27.77 15.73 37.61 2.08
5288 5772 3.438781 CGCAAGGTTGGCAACTTTAGATA 59.561 43.478 27.77 0.00 37.61 1.98
5291 5775 1.336755 ACGCAAGGTTGGCAACTTTAG 59.663 47.619 27.77 23.38 46.39 1.85
5292 5776 1.394618 ACGCAAGGTTGGCAACTTTA 58.605 45.000 27.77 0.00 46.39 1.85
5293 5777 1.394618 TACGCAAGGTTGGCAACTTT 58.605 45.000 27.77 24.16 46.39 2.66
5294 5778 1.066454 GTTACGCAAGGTTGGCAACTT 59.934 47.619 27.77 19.56 46.39 2.66
5295 5779 0.666374 GTTACGCAAGGTTGGCAACT 59.334 50.000 27.77 12.64 46.39 3.16
5296 5780 0.666374 AGTTACGCAAGGTTGGCAAC 59.334 50.000 21.92 21.92 46.39 4.17
5298 5782 0.665835 CAAGTTACGCAAGGTTGGCA 59.334 50.000 0.00 0.00 46.39 4.92
5299 5783 0.666374 ACAAGTTACGCAAGGTTGGC 59.334 50.000 0.00 0.00 46.39 4.52
5302 5786 6.380095 TTTTATGACAAGTTACGCAAGGTT 57.620 33.333 0.00 0.00 46.39 3.50
5303 5787 6.380095 TTTTTATGACAAGTTACGCAAGGT 57.620 33.333 0.00 0.00 46.39 3.50
5324 5808 1.096416 TGGCAACTCCGAACGTTTTT 58.904 45.000 0.46 0.00 37.80 1.94
5325 5809 1.001815 CATGGCAACTCCGAACGTTTT 60.002 47.619 0.46 0.00 37.80 2.43
5326 5810 0.591170 CATGGCAACTCCGAACGTTT 59.409 50.000 0.46 0.00 37.80 3.60
5328 5812 1.070786 ACATGGCAACTCCGAACGT 59.929 52.632 0.00 0.00 37.80 3.99
5330 5814 1.210155 GCACATGGCAACTCCGAAC 59.790 57.895 0.00 0.00 43.97 3.95
5331 5815 3.667087 GCACATGGCAACTCCGAA 58.333 55.556 0.00 0.00 43.97 4.30
5341 5825 0.532573 AGTCAGGTACGAGCACATGG 59.467 55.000 0.00 0.00 31.29 3.66
5342 5826 1.995484 CAAGTCAGGTACGAGCACATG 59.005 52.381 0.00 0.00 0.00 3.21
5343 5827 1.618837 ACAAGTCAGGTACGAGCACAT 59.381 47.619 0.00 0.00 0.00 3.21
5344 5828 1.037493 ACAAGTCAGGTACGAGCACA 58.963 50.000 0.00 0.00 0.00 4.57
5345 5829 1.419374 CACAAGTCAGGTACGAGCAC 58.581 55.000 0.00 0.00 0.00 4.40
5348 5832 1.000163 AGTGCACAAGTCAGGTACGAG 60.000 52.381 21.04 0.00 0.00 4.18
5349 5833 1.037493 AGTGCACAAGTCAGGTACGA 58.963 50.000 21.04 0.00 0.00 3.43
5350 5834 1.865865 AAGTGCACAAGTCAGGTACG 58.134 50.000 21.04 0.00 0.00 3.67
5353 5837 3.769739 TGATAAGTGCACAAGTCAGGT 57.230 42.857 21.04 0.00 0.00 4.00
5355 5839 4.067896 ACCTTGATAAGTGCACAAGTCAG 58.932 43.478 21.04 10.50 39.19 3.51
5358 5842 3.073062 AGGACCTTGATAAGTGCACAAGT 59.927 43.478 21.04 6.27 39.19 3.16
5360 5844 3.788227 AGGACCTTGATAAGTGCACAA 57.212 42.857 21.04 7.03 0.00 3.33
5361 5845 4.716784 AGATAGGACCTTGATAAGTGCACA 59.283 41.667 21.04 0.00 0.00 4.57
5362 5846 5.283457 AGATAGGACCTTGATAAGTGCAC 57.717 43.478 9.40 9.40 0.00 4.57
5364 5848 7.631717 AAAAAGATAGGACCTTGATAAGTGC 57.368 36.000 0.00 0.00 0.00 4.40
5501 6183 2.437359 CGAAGAGCCCCTGCCTTG 60.437 66.667 0.00 0.00 38.69 3.61
5528 6210 1.400846 CAGCTAGCTGGATTGTTGCAG 59.599 52.381 33.06 6.37 43.66 4.41
5554 6236 0.107214 ATGAACCACCGCAATCCGAT 60.107 50.000 0.00 0.00 40.02 4.18
5564 6246 1.288752 CAACCCGCAATGAACCACC 59.711 57.895 0.00 0.00 0.00 4.61
5566 6248 2.569354 GGCAACCCGCAATGAACCA 61.569 57.895 0.00 0.00 45.17 3.67
5573 6255 0.902984 TCTAGAGAGGCAACCCGCAA 60.903 55.000 0.00 0.00 45.17 4.85
5584 6266 3.202097 TGAGACACGATGCTCTAGAGAG 58.798 50.000 24.24 12.69 44.75 3.20
5600 6282 2.915738 CTCAAAAGCATGCCTGAGAC 57.084 50.000 26.46 0.00 38.02 3.36
5627 6319 3.591977 ACCTAAGGGTAAAAGGAGCACAT 59.408 43.478 0.00 0.00 45.32 3.21
5646 6338 4.713792 AGTTCAATCTCACTCCAAACCT 57.286 40.909 0.00 0.00 0.00 3.50
5649 6341 7.645058 AAGAAAAGTTCAATCTCACTCCAAA 57.355 32.000 0.00 0.00 0.00 3.28
5671 6363 9.220767 AGCCAAGAGTATAACTGAACTTAAAAG 57.779 33.333 0.00 0.00 0.00 2.27
5686 6378 1.134491 GCCCGTACAAGCCAAGAGTAT 60.134 52.381 0.00 0.00 0.00 2.12
5741 6601 3.187058 CGCAAGGCCGCAACTATT 58.813 55.556 0.00 0.00 0.00 1.73
5763 6623 0.692476 ACCAGTATTCAGCTGCACCA 59.308 50.000 9.47 0.00 32.93 4.17
5766 6626 4.162131 TGATCTTACCAGTATTCAGCTGCA 59.838 41.667 9.47 0.00 32.93 4.41
5768 6628 5.163364 ACCTGATCTTACCAGTATTCAGCTG 60.163 44.000 7.63 7.63 31.45 4.24
5779 6639 6.072649 TCCGATATAACACCTGATCTTACCA 58.927 40.000 0.00 0.00 0.00 3.25
5789 6649 6.061441 TGCAAATCAATCCGATATAACACCT 58.939 36.000 0.00 0.00 32.51 4.00
5848 6715 6.826231 TGGTGAAAAATGACTTGAACTACAGA 59.174 34.615 0.00 0.00 0.00 3.41
5860 6727 8.087750 TGATAAAATCCAGTGGTGAAAAATGAC 58.912 33.333 9.54 0.00 0.00 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.