Multiple sequence alignment - TraesCS2D01G559100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G559100 chr2D 100.000 5766 0 0 990 6755 631941437 631935672 0.000000e+00 10648.0
1 TraesCS2D01G559100 chr2D 100.000 622 0 0 1 622 631942426 631941805 0.000000e+00 1149.0
2 TraesCS2D01G559100 chr2D 83.881 335 41 8 5319 5648 630679777 630679451 2.370000e-79 307.0
3 TraesCS2D01G559100 chr2D 88.991 109 11 1 6338 6445 386486783 386486891 4.250000e-27 134.0
4 TraesCS2D01G559100 chr2D 94.915 59 3 0 5166 5224 630131590 630131648 7.210000e-15 93.5
5 TraesCS2D01G559100 chr2B 92.065 4222 223 40 2279 6447 775172225 775168063 0.000000e+00 5838.0
6 TraesCS2D01G559100 chr2B 85.055 997 79 32 1469 2460 775173066 775172135 0.000000e+00 952.0
7 TraesCS2D01G559100 chr2B 80.998 521 67 19 5175 5691 774655600 774656092 1.060000e-102 385.0
8 TraesCS2D01G559100 chr2B 80.614 521 69 20 5175 5691 774614431 774614923 2.300000e-99 374.0
9 TraesCS2D01G559100 chr2B 80.614 521 69 20 5175 5691 774639257 774639749 2.300000e-99 374.0
10 TraesCS2D01G559100 chr2B 80.077 522 72 19 5175 5691 773748045 773747551 6.440000e-95 359.0
11 TraesCS2D01G559100 chr2B 79.051 506 46 24 990 1472 775173562 775173094 6.630000e-75 292.0
12 TraesCS2D01G559100 chr2B 86.207 232 13 12 378 597 775173920 775173696 4.070000e-57 233.0
13 TraesCS2D01G559100 chr2B 80.876 251 23 8 6527 6755 775167041 775166794 2.500000e-39 174.0
14 TraesCS2D01G559100 chr2B 86.792 106 13 1 6338 6442 45740759 45740864 4.280000e-22 117.0
15 TraesCS2D01G559100 chr2B 96.721 61 2 0 4255 4315 775170305 775170245 1.200000e-17 102.0
16 TraesCS2D01G559100 chr2A 90.793 3215 186 50 1061 4216 759826015 759829178 0.000000e+00 4196.0
17 TraesCS2D01G559100 chr2A 91.726 1970 138 11 4326 6284 759829193 759831148 0.000000e+00 2712.0
18 TraesCS2D01G559100 chr2A 83.554 377 51 8 5319 5691 760459644 760460013 6.490000e-90 342.0
19 TraesCS2D01G559100 chr2A 88.618 246 13 7 358 597 759825242 759825478 1.110000e-72 285.0
20 TraesCS2D01G559100 chr2A 82.581 310 47 5 5387 5691 760493729 760494036 4.020000e-67 267.0
21 TraesCS2D01G559100 chr2A 85.507 207 21 4 16 220 759824747 759824946 2.470000e-49 207.0
22 TraesCS2D01G559100 chr2A 89.610 154 8 4 220 372 759825072 759825218 8.940000e-44 189.0
23 TraesCS2D01G559100 chr2A 96.491 57 2 0 5168 5224 760435297 760435353 2.010000e-15 95.3
24 TraesCS2D01G559100 chr1A 80.684 497 90 5 1700 2194 9306593 9306101 1.370000e-101 381.0
25 TraesCS2D01G559100 chr1A 84.259 108 16 1 6340 6447 511489829 511489935 3.330000e-18 104.0
26 TraesCS2D01G559100 chr1A 86.667 60 6 2 4263 4321 580638539 580638481 1.570000e-06 65.8
27 TraesCS2D01G559100 chr1A 89.796 49 4 1 4273 4321 21623313 21623360 2.030000e-05 62.1
28 TraesCS2D01G559100 chr3B 88.785 107 12 0 6341 6447 449832584 449832478 1.530000e-26 132.0
29 TraesCS2D01G559100 chr4A 88.182 110 12 1 6338 6447 674359652 674359760 5.500000e-26 130.0
30 TraesCS2D01G559100 chr4A 93.182 44 3 0 4273 4316 735370114 735370157 1.570000e-06 65.8
31 TraesCS2D01G559100 chr4A 94.595 37 2 0 4215 4251 559456591 559456627 2.630000e-04 58.4
32 TraesCS2D01G559100 chr6A 87.387 111 13 1 6338 6447 412366447 412366337 7.110000e-25 126.0
33 TraesCS2D01G559100 chr6B 83.704 135 19 2 2054 2187 133363100 133362968 2.560000e-24 124.0
34 TraesCS2D01G559100 chr6D 86.364 110 15 0 6338 6447 304115755 304115646 3.310000e-23 121.0
35 TraesCS2D01G559100 chr3D 87.037 108 12 2 6340 6447 495320588 495320483 3.310000e-23 121.0
36 TraesCS2D01G559100 chr3D 83.929 112 15 3 6339 6447 423665915 423665804 3.330000e-18 104.0
37 TraesCS2D01G559100 chr3D 83.333 90 15 0 1213 1302 494705250 494705339 4.340000e-12 84.2
38 TraesCS2D01G559100 chr3A 83.133 83 14 0 1211 1293 634421576 634421658 7.260000e-10 76.8
39 TraesCS2D01G559100 chrUn 90.385 52 4 1 4266 4317 97741818 97741868 4.370000e-07 67.6
40 TraesCS2D01G559100 chr4D 86.667 60 6 2 4263 4321 61140745 61140803 1.570000e-06 65.8
41 TraesCS2D01G559100 chr7D 85.246 61 6 2 4261 4320 217384927 217384869 7.320000e-05 60.2
42 TraesCS2D01G559100 chr5B 88.235 51 5 1 4266 4316 491439289 491439240 7.320000e-05 60.2
43 TraesCS2D01G559100 chr4B 97.059 34 1 0 4218 4251 58961634 58961601 2.630000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G559100 chr2D 631935672 631942426 6754 True 5898.500000 10648 100.0000 1 6755 2 chr2D.!!$R2 6754
1 TraesCS2D01G559100 chr2B 775166794 775173920 7126 True 1265.166667 5838 86.6625 378 6755 6 chr2B.!!$R2 6377
2 TraesCS2D01G559100 chr2A 759824747 759831148 6401 False 1517.800000 4196 89.2508 16 6284 5 chr2A.!!$F4 6268

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
475 638 0.099968 CCATCATCAAAGCACCGCAG 59.900 55.000 0.00 0.00 0.00 5.18 F
499 663 1.025113 TCTACCGACCAGCTCGTGAG 61.025 60.000 0.00 0.00 41.18 3.51 F
520 684 2.434185 GGTCCACGCAGCGAATGA 60.434 61.111 24.65 11.63 0.00 2.57 F
1573 2175 1.320555 CGTCTTCCAGTTTATGACGCG 59.679 52.381 3.53 3.53 42.63 6.01 F
1804 2406 0.592247 CGTTGTGCTGCTTGTTGGTC 60.592 55.000 0.00 0.00 0.00 4.02 F
3047 3761 0.403271 ACATTGGTCAGGCAGCTCTT 59.597 50.000 0.00 0.00 0.00 2.85 F
4652 5384 0.037734 TCAGACGTCTCCTAGTGCCA 59.962 55.000 16.96 0.00 0.00 4.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1318 1885 0.108520 TTCCGGGGAATTCGTCGAAG 60.109 55.000 13.88 0.0 0.00 3.79 R
1562 2164 0.733566 TGGACGGACGCGTCATAAAC 60.734 55.000 37.26 23.3 40.34 2.01 R
1748 2350 1.002430 GGGCTGCATATGATTCCGAGA 59.998 52.381 6.97 0.0 0.00 4.04 R
2989 3703 1.067915 CCCCAACCTGCAAACATTACG 60.068 52.381 0.00 0.0 0.00 3.18 R
3712 4427 1.055849 TTGCCCTGTAGAAGCAGTCA 58.944 50.000 0.00 0.0 37.89 3.41 R
4954 5686 0.558712 AGGGGGCAGGTTTTGTGTTA 59.441 50.000 0.00 0.0 0.00 2.41 R
5913 6662 0.038159 AAGTCACCACGAGCAGCTAC 60.038 55.000 0.00 0.0 0.00 3.58 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.083686 CATGTCATGCCCATGTCGA 57.916 52.632 13.88 0.00 39.72 4.20
25 26 1.153568 CATGCCCATGTCGACGTCT 60.154 57.895 14.70 0.00 34.23 4.18
51 52 6.208644 ACGTTCTTCAAGATTTTGACCATTG 58.791 36.000 0.00 0.00 42.79 2.82
63 64 3.228188 TGACCATTGAAGGAGCAAAGT 57.772 42.857 0.00 0.00 0.00 2.66
67 70 2.624838 CCATTGAAGGAGCAAAGTGTGT 59.375 45.455 0.00 0.00 0.00 3.72
68 71 3.068590 CCATTGAAGGAGCAAAGTGTGTT 59.931 43.478 0.00 0.00 0.00 3.32
74 77 3.471680 AGGAGCAAAGTGTGTTTCTCTC 58.528 45.455 0.00 0.00 0.00 3.20
75 78 3.135530 AGGAGCAAAGTGTGTTTCTCTCT 59.864 43.478 0.00 0.00 0.00 3.10
102 105 5.893897 GAGAAATTTGTCTCATGGAGCTT 57.106 39.130 8.04 0.00 43.10 3.74
103 106 5.638783 GAGAAATTTGTCTCATGGAGCTTG 58.361 41.667 8.04 0.00 43.10 4.01
118 121 3.707156 CTTGAGCAATGGACGCGCG 62.707 63.158 30.96 30.96 31.07 6.86
124 127 3.195002 AATGGACGCGCGTGATGG 61.195 61.111 42.90 8.47 0.00 3.51
173 176 5.165961 TGAGCCCCATTATTGTATAGAGC 57.834 43.478 0.00 0.00 0.00 4.09
178 181 4.262894 CCCCATTATTGTATAGAGCCACGT 60.263 45.833 0.00 0.00 0.00 4.49
179 182 4.690748 CCCATTATTGTATAGAGCCACGTG 59.309 45.833 9.08 9.08 0.00 4.49
197 200 4.341502 CGCAAAAGTGGGTGGCCG 62.342 66.667 0.00 0.00 33.13 6.13
230 359 4.161333 CAAACATGAGCGGAGAAAATGTC 58.839 43.478 0.00 0.00 31.29 3.06
245 374 8.498358 GGAGAAAATGTCTTTGGCTTAATTTTG 58.502 33.333 0.00 0.00 36.41 2.44
246 375 8.962884 AGAAAATGTCTTTGGCTTAATTTTGT 57.037 26.923 0.00 0.00 29.66 2.83
247 376 9.394767 AGAAAATGTCTTTGGCTTAATTTTGTT 57.605 25.926 0.00 0.00 29.66 2.83
293 422 7.880713 GGTTTCCCCTCAGCAAATAAAAATAAA 59.119 33.333 0.00 0.00 0.00 1.40
299 428 9.558648 CCCTCAGCAAATAAAAATAAAAATTGC 57.441 29.630 0.00 0.00 41.34 3.56
343 473 2.908073 AAAAACGGCCGAGCAGCAG 61.908 57.895 35.90 0.00 0.00 4.24
397 560 3.550030 GGGTGTCGTTTTCACATGAAAGG 60.550 47.826 0.00 4.63 43.90 3.11
399 562 4.527564 GTGTCGTTTTCACATGAAAGGAG 58.472 43.478 0.00 4.02 43.90 3.69
401 564 4.511454 TGTCGTTTTCACATGAAAGGAGAG 59.489 41.667 0.00 0.51 43.90 3.20
402 565 4.750098 GTCGTTTTCACATGAAAGGAGAGA 59.250 41.667 0.00 2.49 43.90 3.10
403 566 5.409826 GTCGTTTTCACATGAAAGGAGAGAT 59.590 40.000 0.00 0.00 43.90 2.75
404 567 5.409520 TCGTTTTCACATGAAAGGAGAGATG 59.590 40.000 0.00 0.00 43.90 2.90
406 569 6.073058 CGTTTTCACATGAAAGGAGAGATGAA 60.073 38.462 0.00 0.00 43.90 2.57
407 570 7.361542 CGTTTTCACATGAAAGGAGAGATGAAT 60.362 37.037 0.00 0.00 43.90 2.57
453 616 4.814294 GCGGCCCACCTGTCGTAG 62.814 72.222 0.00 0.00 0.00 3.51
454 617 4.814294 CGGCCCACCTGTCGTAGC 62.814 72.222 0.00 0.00 0.00 3.58
457 620 2.264794 CCCACCTGTCGTAGCACC 59.735 66.667 0.00 0.00 0.00 5.01
459 622 1.596934 CCACCTGTCGTAGCACCAT 59.403 57.895 0.00 0.00 0.00 3.55
471 634 1.180029 AGCACCATCATCAAAGCACC 58.820 50.000 0.00 0.00 0.00 5.01
475 638 0.099968 CCATCATCAAAGCACCGCAG 59.900 55.000 0.00 0.00 0.00 5.18
499 663 1.025113 TCTACCGACCAGCTCGTGAG 61.025 60.000 0.00 0.00 41.18 3.51
519 683 2.434884 AGGTCCACGCAGCGAATG 60.435 61.111 24.65 10.43 0.00 2.67
520 684 2.434185 GGTCCACGCAGCGAATGA 60.434 61.111 24.65 11.63 0.00 2.57
521 685 2.456119 GGTCCACGCAGCGAATGAG 61.456 63.158 24.65 4.88 34.41 2.90
617 798 2.503824 CCCCTTTATTCTTCCCTCCCT 58.496 52.381 0.00 0.00 0.00 4.20
618 799 2.443632 CCCCTTTATTCTTCCCTCCCTC 59.556 54.545 0.00 0.00 0.00 4.30
619 800 2.443632 CCCTTTATTCTTCCCTCCCTCC 59.556 54.545 0.00 0.00 0.00 4.30
620 801 2.443632 CCTTTATTCTTCCCTCCCTCCC 59.556 54.545 0.00 0.00 0.00 4.30
1318 1885 3.937447 CCCTAATCCGCCCCCGAC 61.937 72.222 0.00 0.00 36.29 4.79
1477 2079 3.383185 TGGAAACTGAATTTCGCTTTGGT 59.617 39.130 0.00 0.00 46.72 3.67
1537 2139 2.484264 CGTAGTTTTCTCCAGCCCAAAG 59.516 50.000 0.00 0.00 0.00 2.77
1562 2164 2.819115 CTGGATCATGTCGTCTTCCAG 58.181 52.381 3.11 3.11 45.32 3.86
1573 2175 1.320555 CGTCTTCCAGTTTATGACGCG 59.679 52.381 3.53 3.53 42.63 6.01
1732 2334 6.716628 AGGTTGCTCATTCAGTTCAGAAATTA 59.283 34.615 0.00 0.00 0.00 1.40
1739 2341 7.572759 TCATTCAGTTCAGAAATTACGTGAAC 58.427 34.615 15.01 15.01 46.93 3.18
1748 2350 7.531716 TCAGAAATTACGTGAACACAGTTTTT 58.468 30.769 0.00 7.54 0.00 1.94
1761 2363 7.390440 TGAACACAGTTTTTCTCGGAATCATAT 59.610 33.333 0.00 0.00 0.00 1.78
1771 2373 1.589716 GGAATCATATGCAGCCCGCC 61.590 60.000 0.00 0.00 41.33 6.13
1774 2376 4.584518 CATATGCAGCCCGCCCCA 62.585 66.667 0.00 0.00 41.33 4.96
1775 2377 3.819652 ATATGCAGCCCGCCCCAA 61.820 61.111 0.00 0.00 41.33 4.12
1793 2395 3.414549 CAAGGTGTTTAACGTTGTGCT 57.585 42.857 11.99 0.00 45.43 4.40
1804 2406 0.592247 CGTTGTGCTGCTTGTTGGTC 60.592 55.000 0.00 0.00 0.00 4.02
1806 2408 0.740149 TTGTGCTGCTTGTTGGTCTG 59.260 50.000 0.00 0.00 0.00 3.51
1861 2464 4.020543 AGCTTCTCTTCGAACAGGAGTAT 58.979 43.478 10.09 0.00 0.00 2.12
1961 2564 3.003480 GTCTTGCAGGAGGTAATGTGTC 58.997 50.000 0.00 0.00 0.00 3.67
1962 2565 2.637382 TCTTGCAGGAGGTAATGTGTCA 59.363 45.455 0.00 0.00 0.00 3.58
1974 2577 5.938125 AGGTAATGTGTCACATAAACACCTC 59.062 40.000 23.12 12.46 45.10 3.85
1990 2596 3.084786 CACCTCCCAGTCAAAAGATTCC 58.915 50.000 0.00 0.00 0.00 3.01
1992 2598 4.019321 CACCTCCCAGTCAAAAGATTCCTA 60.019 45.833 0.00 0.00 0.00 2.94
1996 2602 5.500234 TCCCAGTCAAAAGATTCCTATGTG 58.500 41.667 0.00 0.00 0.00 3.21
2017 2623 3.293311 CAAATGAAGGGCAGTTGTCAG 57.707 47.619 0.00 0.00 44.98 3.51
2018 2624 2.624838 CAAATGAAGGGCAGTTGTCAGT 59.375 45.455 0.00 0.00 44.98 3.41
2158 2764 7.581011 ACATTGACAGTGTTTCTTGTTTTTC 57.419 32.000 0.00 0.00 0.00 2.29
2163 2769 7.479980 TGACAGTGTTTCTTGTTTTTCCTATG 58.520 34.615 0.00 0.00 0.00 2.23
2164 2770 7.122055 TGACAGTGTTTCTTGTTTTTCCTATGT 59.878 33.333 0.00 0.00 0.00 2.29
2169 2775 6.547880 TGTTTCTTGTTTTTCCTATGTAGGCA 59.452 34.615 1.02 0.00 43.31 4.75
2187 2793 3.068165 AGGCAGTTTGAAAAGTTACAGGC 59.932 43.478 0.00 0.00 0.00 4.85
2191 2797 5.650543 CAGTTTGAAAAGTTACAGGCTGTT 58.349 37.500 27.24 6.16 0.00 3.16
2192 2798 6.679392 GCAGTTTGAAAAGTTACAGGCTGTTA 60.679 38.462 27.24 14.76 0.00 2.41
2193 2799 7.254852 CAGTTTGAAAAGTTACAGGCTGTTAA 58.745 34.615 27.24 14.52 0.00 2.01
2194 2800 7.920682 CAGTTTGAAAAGTTACAGGCTGTTAAT 59.079 33.333 27.24 13.76 0.00 1.40
2195 2801 7.920682 AGTTTGAAAAGTTACAGGCTGTTAATG 59.079 33.333 27.24 0.00 0.00 1.90
2196 2802 6.952773 TGAAAAGTTACAGGCTGTTAATGT 57.047 33.333 27.24 8.40 0.00 2.71
2197 2803 7.341445 TGAAAAGTTACAGGCTGTTAATGTT 57.659 32.000 27.24 17.38 0.00 2.71
2198 2804 8.453238 TGAAAAGTTACAGGCTGTTAATGTTA 57.547 30.769 27.24 2.10 0.00 2.41
2199 2805 8.904834 TGAAAAGTTACAGGCTGTTAATGTTAA 58.095 29.630 27.24 7.76 0.00 2.01
2200 2806 9.738832 GAAAAGTTACAGGCTGTTAATGTTAAA 57.261 29.630 27.24 8.35 0.00 1.52
2245 2852 6.799512 AGATTTGTCTGTGTTTCTTGAAAGG 58.200 36.000 0.00 0.00 0.00 3.11
2253 2860 8.515414 GTCTGTGTTTCTTGAAAGGCTAATAAT 58.485 33.333 0.00 0.00 0.00 1.28
2281 2889 5.126067 ACAGTATTATGACAACTCCATGGC 58.874 41.667 6.96 0.00 0.00 4.40
2291 2899 4.718961 ACAACTCCATGGCCAATATCTAC 58.281 43.478 10.96 0.00 0.00 2.59
2295 2903 4.202398 ACTCCATGGCCAATATCTACAGTG 60.202 45.833 10.96 0.00 0.00 3.66
2302 2910 5.530915 TGGCCAATATCTACAGTGTTATTGC 59.469 40.000 0.61 12.54 32.97 3.56
2308 2916 8.892723 CAATATCTACAGTGTTATTGCAAGGAA 58.107 33.333 4.94 0.00 0.00 3.36
2324 2932 8.810652 TTGCAAGGAACATGTAGAAATTAAAC 57.189 30.769 0.00 0.00 0.00 2.01
2325 2933 7.375053 TGCAAGGAACATGTAGAAATTAAACC 58.625 34.615 0.00 0.00 0.00 3.27
2339 2947 5.760484 AATTAAACCATGCCCATCTTTGT 57.240 34.783 0.00 0.00 0.00 2.83
2347 2955 4.102524 CCATGCCCATCTTTGTACTAGGTA 59.897 45.833 0.00 0.00 0.00 3.08
2348 2956 5.397447 CCATGCCCATCTTTGTACTAGGTAA 60.397 44.000 0.00 0.00 0.00 2.85
2349 2957 5.353394 TGCCCATCTTTGTACTAGGTAAG 57.647 43.478 0.00 0.00 0.00 2.34
2350 2958 4.781087 TGCCCATCTTTGTACTAGGTAAGT 59.219 41.667 0.00 0.00 42.62 2.24
2351 2959 5.116882 GCCCATCTTTGTACTAGGTAAGTG 58.883 45.833 0.00 0.00 39.39 3.16
2352 2960 5.338137 GCCCATCTTTGTACTAGGTAAGTGT 60.338 44.000 0.00 0.00 39.39 3.55
2353 2961 6.127253 GCCCATCTTTGTACTAGGTAAGTGTA 60.127 42.308 0.00 0.00 39.39 2.90
2354 2962 7.580109 GCCCATCTTTGTACTAGGTAAGTGTAA 60.580 40.741 0.00 0.00 39.39 2.41
2355 2963 8.316214 CCCATCTTTGTACTAGGTAAGTGTAAA 58.684 37.037 0.00 0.00 39.39 2.01
2356 2964 9.715121 CCATCTTTGTACTAGGTAAGTGTAAAA 57.285 33.333 0.00 0.00 39.39 1.52
2521 3230 5.862678 GAGAATCCTAGTAGCCTCTGTTT 57.137 43.478 0.00 0.00 0.00 2.83
2548 3257 6.005583 ACAGTTGAATGTGCTTGTCTTATG 57.994 37.500 0.00 0.00 30.46 1.90
2628 3337 4.134563 TGCCCTGTTTCTCTGAAGTTTAC 58.865 43.478 0.00 0.00 0.00 2.01
2630 3339 4.747009 GCCCTGTTTCTCTGAAGTTTACCT 60.747 45.833 0.00 0.00 0.00 3.08
2633 3342 6.651225 CCCTGTTTCTCTGAAGTTTACCTAAG 59.349 42.308 0.00 0.00 0.00 2.18
2683 3392 8.950403 ACTGTGTTTCTTATTTTTCTTATCGC 57.050 30.769 0.00 0.00 0.00 4.58
2714 3423 6.385649 TGAAAAGTTACAGGCTGTTTAAGG 57.614 37.500 27.24 0.00 0.00 2.69
2722 3431 7.390718 AGTTACAGGCTGTTTAAGGTTTATCTG 59.609 37.037 27.24 0.00 0.00 2.90
2873 3583 7.457024 TGATGATCAGTTTGATGTTTGTGAT 57.543 32.000 0.09 0.00 37.20 3.06
2896 3606 7.449395 TGATATTTAAAGGATCAAGCATGGAGG 59.551 37.037 11.35 0.00 0.00 4.30
2897 3607 4.860802 TTAAAGGATCAAGCATGGAGGA 57.139 40.909 0.00 0.00 0.00 3.71
2989 3703 3.214328 CCAGTGTAAGATACCAATGCCC 58.786 50.000 0.00 0.00 0.00 5.36
2993 3707 4.162698 AGTGTAAGATACCAATGCCCGTAA 59.837 41.667 0.00 0.00 0.00 3.18
3047 3761 0.403271 ACATTGGTCAGGCAGCTCTT 59.597 50.000 0.00 0.00 0.00 2.85
3050 3764 2.125350 GGTCAGGCAGCTCTTCGG 60.125 66.667 0.00 0.00 0.00 4.30
3073 3787 3.070018 GCGCTGATTCTAAGCCATATGT 58.930 45.455 0.00 0.00 37.37 2.29
3077 3791 5.410746 CGCTGATTCTAAGCCATATGTTCAT 59.589 40.000 1.24 0.00 37.37 2.57
3362 4077 8.177119 TGTTATTGCTTTCACCTTACAGATTT 57.823 30.769 0.00 0.00 0.00 2.17
3712 4427 0.763035 AGCGGGTGGTAGTTGACTTT 59.237 50.000 0.00 0.00 0.00 2.66
3713 4428 0.872388 GCGGGTGGTAGTTGACTTTG 59.128 55.000 0.00 0.00 0.00 2.77
3775 4490 0.534203 TTTCAACCCGGCAGACTGAC 60.534 55.000 6.65 1.15 0.00 3.51
3823 4547 4.331968 TGTGCCTTATAGGAACCAAACTG 58.668 43.478 1.39 0.00 43.77 3.16
3853 4577 7.041916 TGTTTGCTGCTTTTCCATTCTTTAATG 60.042 33.333 0.00 0.00 41.90 1.90
3883 4607 3.873952 CCTCTGTGCAGATAAGTAAAGCC 59.126 47.826 2.06 0.00 36.76 4.35
3902 4626 1.203052 CCAAAACCATCTGCGAATGCT 59.797 47.619 0.00 0.00 43.34 3.79
3940 4664 2.744202 CACCGACCTGAAATTTGAGGAG 59.256 50.000 27.84 19.74 34.93 3.69
4216 4940 9.482627 GAGAGCAAATAAGTTGTACTATGCTAT 57.517 33.333 0.00 0.00 39.63 2.97
4235 4959 7.446106 TGCTATTCCCTCTGTTCCTAAATAA 57.554 36.000 0.00 0.00 0.00 1.40
4258 4990 4.385358 AGACGTTTTTGCAGGAACAAAT 57.615 36.364 12.78 0.69 39.18 2.32
4279 5011 8.366671 CAAATAAGTTGTACTATGCTACTCCC 57.633 38.462 0.00 0.00 32.08 4.30
4289 5021 3.689872 ATGCTACTCCCTCTGTTCCTA 57.310 47.619 0.00 0.00 0.00 2.94
4310 5042 9.801873 TTCCTAAATATAAGACATTTTTGCAGC 57.198 29.630 0.00 0.00 0.00 5.25
4369 5101 3.187227 GTGCCTATGTTCTGTTGACACTG 59.813 47.826 0.00 0.00 0.00 3.66
4372 5104 3.997021 CCTATGTTCTGTTGACACTGTCC 59.003 47.826 6.72 0.00 0.00 4.02
4476 5208 2.455557 CCATCCTTGGTTTGTGCCATA 58.544 47.619 0.00 0.00 38.48 2.74
4486 5218 8.091449 CCTTGGTTTGTGCCATACTATTTTTAA 58.909 33.333 0.00 0.00 38.48 1.52
4522 5254 6.093219 CCTCACAACATTCTCTGTGGATTAAG 59.907 42.308 2.63 0.00 42.62 1.85
4603 5335 1.952296 AGCACTTCCAAGCAGAAACTG 59.048 47.619 0.00 0.00 34.12 3.16
4652 5384 0.037734 TCAGACGTCTCCTAGTGCCA 59.962 55.000 16.96 0.00 0.00 4.92
4653 5385 0.888619 CAGACGTCTCCTAGTGCCAA 59.111 55.000 16.96 0.00 0.00 4.52
4675 5407 2.030540 CACATGCAACAGAACTTCAGGG 60.031 50.000 0.00 0.00 0.00 4.45
4783 5515 2.673258 TCATCAACGGATAGGCCAGTA 58.327 47.619 5.01 0.00 35.94 2.74
4910 5642 1.488705 TTACACTGCAGTCCTGGGGG 61.489 60.000 18.64 6.46 0.00 5.40
4954 5686 2.301346 CTGCTCAGGTTTCAGTTTGGT 58.699 47.619 0.00 0.00 0.00 3.67
5018 5750 6.985059 CACATCTTCTCTGAATGAAGCATCTA 59.015 38.462 2.66 0.00 40.31 1.98
5020 5752 6.535963 TCTTCTCTGAATGAAGCATCTACA 57.464 37.500 2.66 0.00 40.31 2.74
5026 5758 6.279123 TCTGAATGAAGCATCTACATCAGAC 58.721 40.000 10.34 0.00 35.62 3.51
5035 5767 4.268884 GCATCTACATCAGACGGTTCTTTC 59.731 45.833 0.00 0.00 35.62 2.62
5043 5775 5.661056 TCAGACGGTTCTTTCATCAGTAT 57.339 39.130 0.00 0.00 0.00 2.12
5095 5827 6.020984 GTCAAAAATGCTTTGGTTGAACAAC 58.979 36.000 8.91 8.91 40.45 3.32
5254 5986 4.530875 CTCTTGGCCCTGACTATGAAATT 58.469 43.478 0.00 0.00 0.00 1.82
5304 6036 4.245660 TCGATGCTCTCAAAGGTAAGTTG 58.754 43.478 0.00 0.00 0.00 3.16
5316 6048 8.232913 TCAAAGGTAAGTTGCTTTTATCAAGT 57.767 30.769 0.87 0.00 0.00 3.16
5493 6236 1.276859 TGCTGGATGAGGCTGGTGAT 61.277 55.000 0.00 0.00 0.00 3.06
5520 6263 0.676466 TGGCGGAAATCGATGCTGTT 60.676 50.000 0.00 0.00 42.43 3.16
5553 6296 1.919918 CTGAGCTCGTTGATGACTCC 58.080 55.000 9.64 0.00 0.00 3.85
5568 6311 3.651980 CTCCCAGCCCAAGAAGCCC 62.652 68.421 0.00 0.00 0.00 5.19
5574 6317 1.002857 AGCCCAAGAAGCCCAGTTAT 58.997 50.000 0.00 0.00 0.00 1.89
5586 6329 5.099042 AGCCCAGTTATTACAGGTACTTG 57.901 43.478 2.98 2.98 34.60 3.16
5610 6353 5.748402 AGAACATGCCATTTCTGTCTATCA 58.252 37.500 0.00 0.00 30.65 2.15
5628 6373 4.564782 ATCACTCTTTCATTCTGCTCCA 57.435 40.909 0.00 0.00 0.00 3.86
5629 6374 4.356405 TCACTCTTTCATTCTGCTCCAA 57.644 40.909 0.00 0.00 0.00 3.53
5635 6380 8.084073 CACTCTTTCATTCTGCTCCAAAATAAA 58.916 33.333 0.00 0.00 0.00 1.40
5638 6383 9.426837 TCTTTCATTCTGCTCCAAAATAAAATG 57.573 29.630 0.00 0.00 0.00 2.32
5640 6385 7.243604 TCATTCTGCTCCAAAATAAAATGGT 57.756 32.000 0.00 0.00 37.94 3.55
5646 6391 7.615365 TCTGCTCCAAAATAAAATGGTACTGAT 59.385 33.333 0.00 0.00 37.94 2.90
5647 6392 7.546358 TGCTCCAAAATAAAATGGTACTGATG 58.454 34.615 0.00 0.00 37.94 3.07
5648 6393 6.980397 GCTCCAAAATAAAATGGTACTGATGG 59.020 38.462 0.00 0.00 37.94 3.51
5655 6400 9.705290 AAATAAAATGGTACTGATGGTTTGTTC 57.295 29.630 0.00 0.00 0.00 3.18
5656 6401 6.976934 AAAATGGTACTGATGGTTTGTTCT 57.023 33.333 0.00 0.00 0.00 3.01
5664 6412 7.065443 GGTACTGATGGTTTGTTCTGTTATACC 59.935 40.741 0.00 0.00 0.00 2.73
5673 6421 5.080969 TGTTCTGTTATACCTGCAGTACC 57.919 43.478 13.81 0.00 32.46 3.34
5691 6439 6.028368 CAGTACCTATGAAGTTCAGTACACG 58.972 44.000 24.51 16.21 31.74 4.49
5706 6454 2.364842 ACGCTGAGGAGGCAGGAT 60.365 61.111 0.00 0.00 36.41 3.24
5751 6499 3.311110 GCTGTCCGGGACCTGTCA 61.311 66.667 23.81 4.43 0.00 3.58
5756 6504 0.179073 GTCCGGGACCTGTCATGATG 60.179 60.000 16.55 0.00 0.00 3.07
5772 6520 0.532573 GATGTCTGCCAGAAGGACGA 59.467 55.000 0.00 0.00 36.89 4.20
5777 6525 1.544691 TCTGCCAGAAGGACGACTAAC 59.455 52.381 0.00 0.00 36.89 2.34
5803 6552 1.043116 TCTCATAGGACACGGGGCAG 61.043 60.000 0.00 0.00 0.00 4.85
5804 6553 2.203070 CATAGGACACGGGGCAGC 60.203 66.667 0.00 0.00 0.00 5.25
5827 6576 4.598062 GTCTAAACAAAGTTCCAGCACAC 58.402 43.478 0.00 0.00 0.00 3.82
5850 6599 8.152246 ACACTAGATATCTGTAGGTCACTAGTC 58.848 40.741 15.79 0.00 37.69 2.59
5903 6652 1.421410 AACCGTTCGATGATCTGCGC 61.421 55.000 0.00 0.00 0.00 6.09
5913 6662 2.203167 ATCTGCGCTGGGATGCTG 60.203 61.111 14.70 0.00 0.00 4.41
5922 6671 0.532417 CTGGGATGCTGTAGCTGCTC 60.532 60.000 4.91 0.00 42.66 4.26
6015 6768 4.661222 TGCTGATTTCACATACCCTTCAA 58.339 39.130 0.00 0.00 0.00 2.69
6118 6876 5.176223 CAGCCATTGTTCATTGTTGAAAGAC 59.824 40.000 0.00 0.00 43.29 3.01
6159 6917 1.269569 CGCCCCCTTTGTTTTGAGTTC 60.270 52.381 0.00 0.00 0.00 3.01
6163 6921 3.704061 CCCCCTTTGTTTTGAGTTCTGAA 59.296 43.478 0.00 0.00 0.00 3.02
6166 6924 5.102313 CCCTTTGTTTTGAGTTCTGAACAC 58.898 41.667 21.50 15.95 32.28 3.32
6178 6936 3.708403 TCTGAACACAGGCTTCATGAT 57.292 42.857 0.00 0.00 33.04 2.45
6179 6937 3.340928 TCTGAACACAGGCTTCATGATG 58.659 45.455 0.00 0.00 33.04 3.07
6180 6938 3.008266 TCTGAACACAGGCTTCATGATGA 59.992 43.478 12.54 0.00 33.04 2.92
6181 6939 3.945921 CTGAACACAGGCTTCATGATGAT 59.054 43.478 12.54 0.00 0.00 2.45
6182 6940 3.692593 TGAACACAGGCTTCATGATGATG 59.307 43.478 12.54 11.48 0.00 3.07
6183 6941 3.639672 ACACAGGCTTCATGATGATGA 57.360 42.857 12.54 0.00 36.78 2.92
6184 6942 4.166246 ACACAGGCTTCATGATGATGAT 57.834 40.909 12.54 0.00 38.43 2.45
6186 6944 4.579340 ACACAGGCTTCATGATGATGATTC 59.421 41.667 12.54 1.76 38.43 2.52
6191 6949 4.022242 GGCTTCATGATGATGATTCCCTTG 60.022 45.833 12.54 0.00 38.43 3.61
6193 6951 5.278364 GCTTCATGATGATGATTCCCTTGTC 60.278 44.000 12.54 0.00 38.43 3.18
6200 6959 0.477597 TGATTCCCTTGTCCACCCCT 60.478 55.000 0.00 0.00 0.00 4.79
6212 6971 3.196685 TGTCCACCCCTTTTGTTTTTGAG 59.803 43.478 0.00 0.00 0.00 3.02
6226 6985 5.870706 TGTTTTTGAGGTTTCCCTTTGTTT 58.129 33.333 0.00 0.00 42.86 2.83
6237 6996 2.175931 TCCCTTTGTTTAGGCTCCACAA 59.824 45.455 7.21 7.21 33.73 3.33
6255 7014 5.036737 CCACAAGCTTGTACTTCAACTTTG 58.963 41.667 30.67 14.01 39.91 2.77
6256 7015 5.163663 CCACAAGCTTGTACTTCAACTTTGA 60.164 40.000 30.67 0.00 39.91 2.69
6290 7049 7.311092 TGGATACGGTAGGAACATTATCATT 57.689 36.000 0.00 0.00 42.51 2.57
6299 7058 7.339466 GGTAGGAACATTATCATTGACCTTTGT 59.661 37.037 0.00 0.00 0.00 2.83
6306 7065 7.656948 ACATTATCATTGACCTTTGTGTTTTGG 59.343 33.333 0.00 0.00 0.00 3.28
6310 7069 6.047870 TCATTGACCTTTGTGTTTTGGAATG 58.952 36.000 0.00 0.00 0.00 2.67
6311 7070 4.399004 TGACCTTTGTGTTTTGGAATGG 57.601 40.909 0.00 0.00 0.00 3.16
6312 7071 3.130633 GACCTTTGTGTTTTGGAATGGC 58.869 45.455 0.00 0.00 0.00 4.40
6313 7072 2.771372 ACCTTTGTGTTTTGGAATGGCT 59.229 40.909 0.00 0.00 0.00 4.75
6314 7073 3.964031 ACCTTTGTGTTTTGGAATGGCTA 59.036 39.130 0.00 0.00 0.00 3.93
6315 7074 4.407296 ACCTTTGTGTTTTGGAATGGCTAA 59.593 37.500 0.00 0.00 0.00 3.09
6316 7075 5.104735 ACCTTTGTGTTTTGGAATGGCTAAA 60.105 36.000 0.00 0.00 0.00 1.85
6317 7076 5.819901 CCTTTGTGTTTTGGAATGGCTAAAA 59.180 36.000 0.00 0.00 35.00 1.52
6318 7077 6.317391 CCTTTGTGTTTTGGAATGGCTAAAAA 59.683 34.615 0.00 0.00 38.45 1.94
6319 7078 7.013178 CCTTTGTGTTTTGGAATGGCTAAAAAT 59.987 33.333 0.00 0.00 38.45 1.82
6320 7079 7.872113 TTGTGTTTTGGAATGGCTAAAAATT 57.128 28.000 0.00 0.00 38.45 1.82
6321 7080 7.489574 TGTGTTTTGGAATGGCTAAAAATTC 57.510 32.000 0.00 0.00 38.45 2.17
6322 7081 6.201806 TGTGTTTTGGAATGGCTAAAAATTCG 59.798 34.615 0.00 0.00 38.45 3.34
6324 7083 6.422400 TGTTTTGGAATGGCTAAAAATTCGAC 59.578 34.615 0.00 0.00 38.45 4.20
6326 7085 3.754323 TGGAATGGCTAAAAATTCGACGT 59.246 39.130 0.00 0.00 34.28 4.34
6329 7088 4.600012 ATGGCTAAAAATTCGACGTCAG 57.400 40.909 17.16 8.67 0.00 3.51
6331 7090 4.059511 TGGCTAAAAATTCGACGTCAGAA 58.940 39.130 17.16 18.72 0.00 3.02
6332 7091 4.512198 TGGCTAAAAATTCGACGTCAGAAA 59.488 37.500 20.79 11.00 0.00 2.52
6333 7092 5.180492 TGGCTAAAAATTCGACGTCAGAAAT 59.820 36.000 20.79 13.33 0.00 2.17
6334 7093 6.084277 GGCTAAAAATTCGACGTCAGAAATT 58.916 36.000 20.79 17.19 0.00 1.82
6335 7094 6.581166 GGCTAAAAATTCGACGTCAGAAATTT 59.419 34.615 20.79 20.57 33.61 1.82
6336 7095 7.409343 GGCTAAAAATTCGACGTCAGAAATTTG 60.409 37.037 23.72 17.52 32.85 2.32
6358 7126 2.584791 GCAATTTATATTGGCGCGAGG 58.415 47.619 12.10 0.00 41.21 4.63
6369 7137 1.298638 GCGCGAGGATGGCAAATTC 60.299 57.895 12.10 0.00 41.24 2.17
6392 7160 0.599728 TTGCAAGCACGGCAATTTCC 60.600 50.000 0.00 0.00 45.57 3.13
6393 7161 1.006337 GCAAGCACGGCAATTTCCA 60.006 52.632 0.00 0.00 0.00 3.53
6396 7164 2.125952 GCACGGCAATTTCCAGGC 60.126 61.111 0.00 0.00 0.00 4.85
6401 7170 1.347378 ACGGCAATTTCCAGGCAAAAT 59.653 42.857 0.00 0.00 0.00 1.82
6407 7176 5.065090 GGCAATTTCCAGGCAAAATATGAAC 59.935 40.000 0.00 0.00 0.00 3.18
6408 7177 5.065090 GCAATTTCCAGGCAAAATATGAACC 59.935 40.000 0.00 0.00 0.00 3.62
6412 7181 1.408702 CAGGCAAAATATGAACCGGGG 59.591 52.381 6.32 0.00 0.00 5.73
6413 7182 1.286553 AGGCAAAATATGAACCGGGGA 59.713 47.619 6.32 0.00 0.00 4.81
6428 7197 1.111715 GGGGAGGATTTGCCATGCTC 61.112 60.000 6.08 6.08 39.49 4.26
6471 8210 2.853731 AACGTTCGTTTTGCCAATGA 57.146 40.000 4.72 0.00 0.00 2.57
6488 8227 6.428465 TGCCAATGACTAAAAATCTGACGTTA 59.572 34.615 0.00 0.00 0.00 3.18
6499 8238 7.484035 AAAATCTGACGTTAGCTTGATATCC 57.516 36.000 1.76 0.00 0.00 2.59
6500 8239 4.224715 TCTGACGTTAGCTTGATATCCG 57.775 45.455 1.76 0.00 0.00 4.18
6501 8240 3.004419 TCTGACGTTAGCTTGATATCCGG 59.996 47.826 1.76 0.00 0.00 5.14
6502 8241 2.035449 TGACGTTAGCTTGATATCCGGG 59.965 50.000 0.00 0.00 0.00 5.73
6503 8242 2.035576 GACGTTAGCTTGATATCCGGGT 59.964 50.000 0.00 0.00 0.00 5.28
6504 8243 2.035576 ACGTTAGCTTGATATCCGGGTC 59.964 50.000 0.00 0.00 0.00 4.46
6505 8244 2.609737 CGTTAGCTTGATATCCGGGTCC 60.610 54.545 0.00 0.00 0.00 4.46
6506 8245 2.633481 GTTAGCTTGATATCCGGGTCCT 59.367 50.000 0.00 0.00 0.00 3.85
6507 8246 1.807814 AGCTTGATATCCGGGTCCTT 58.192 50.000 0.00 0.00 0.00 3.36
6508 8247 2.127708 AGCTTGATATCCGGGTCCTTT 58.872 47.619 0.00 0.00 0.00 3.11
6509 8248 2.158755 AGCTTGATATCCGGGTCCTTTG 60.159 50.000 0.00 0.00 0.00 2.77
6510 8249 2.421529 GCTTGATATCCGGGTCCTTTGT 60.422 50.000 0.00 0.00 0.00 2.83
6511 8250 3.206150 CTTGATATCCGGGTCCTTTGTG 58.794 50.000 0.00 0.00 0.00 3.33
6512 8251 2.193127 TGATATCCGGGTCCTTTGTGT 58.807 47.619 0.00 0.00 0.00 3.72
6513 8252 2.574369 TGATATCCGGGTCCTTTGTGTT 59.426 45.455 0.00 0.00 0.00 3.32
6514 8253 3.009695 TGATATCCGGGTCCTTTGTGTTT 59.990 43.478 0.00 0.00 0.00 2.83
6515 8254 2.375014 ATCCGGGTCCTTTGTGTTTT 57.625 45.000 0.00 0.00 0.00 2.43
6516 8255 3.512219 ATCCGGGTCCTTTGTGTTTTA 57.488 42.857 0.00 0.00 0.00 1.52
6517 8256 3.512219 TCCGGGTCCTTTGTGTTTTAT 57.488 42.857 0.00 0.00 0.00 1.40
6518 8257 4.637387 TCCGGGTCCTTTGTGTTTTATA 57.363 40.909 0.00 0.00 0.00 0.98
6519 8258 5.182169 TCCGGGTCCTTTGTGTTTTATAT 57.818 39.130 0.00 0.00 0.00 0.86
6520 8259 6.310764 TCCGGGTCCTTTGTGTTTTATATA 57.689 37.500 0.00 0.00 0.00 0.86
6521 8260 6.902408 TCCGGGTCCTTTGTGTTTTATATAT 58.098 36.000 0.00 0.00 0.00 0.86
6522 8261 6.768861 TCCGGGTCCTTTGTGTTTTATATATG 59.231 38.462 0.00 0.00 0.00 1.78
6523 8262 6.016610 CCGGGTCCTTTGTGTTTTATATATGG 60.017 42.308 0.00 0.00 0.00 2.74
6524 8263 6.544564 CGGGTCCTTTGTGTTTTATATATGGT 59.455 38.462 0.00 0.00 0.00 3.55
6525 8264 7.255001 CGGGTCCTTTGTGTTTTATATATGGTC 60.255 40.741 0.00 0.00 0.00 4.02
6545 8284 5.066375 TGGTCATTTTGAGATAAAGATGGCG 59.934 40.000 0.00 0.00 0.00 5.69
6548 8287 1.581934 TTGAGATAAAGATGGCGCGG 58.418 50.000 8.83 0.00 0.00 6.46
6549 8288 0.249868 TGAGATAAAGATGGCGCGGG 60.250 55.000 8.83 0.00 0.00 6.13
6555 8294 1.873270 AAAGATGGCGCGGGGTTTTC 61.873 55.000 8.83 0.00 0.00 2.29
6567 8307 3.023832 CGGGGTTTTCAGCCTATTTGAT 58.976 45.455 0.00 0.00 40.83 2.57
6568 8308 4.204012 CGGGGTTTTCAGCCTATTTGATA 58.796 43.478 0.00 0.00 40.83 2.15
6569 8309 4.036380 CGGGGTTTTCAGCCTATTTGATAC 59.964 45.833 0.00 0.00 40.83 2.24
6570 8310 5.201243 GGGGTTTTCAGCCTATTTGATACT 58.799 41.667 0.00 0.00 40.83 2.12
6571 8311 6.362248 GGGGTTTTCAGCCTATTTGATACTA 58.638 40.000 0.00 0.00 40.83 1.82
6618 8358 5.361857 CCATAATCCTTTCTCCACAGCAAAT 59.638 40.000 0.00 0.00 0.00 2.32
6627 8367 4.650734 TCTCCACAGCAAATACATTGACA 58.349 39.130 0.00 0.00 41.85 3.58
6644 8384 4.284829 TGACATCATGTTACTGCCTGAA 57.715 40.909 0.00 0.00 0.00 3.02
6659 8416 4.314121 TGCCTGAATGTGCCAAAATTAAC 58.686 39.130 0.00 0.00 0.00 2.01
6663 8420 5.511202 CCTGAATGTGCCAAAATTAACCTGT 60.511 40.000 0.00 0.00 0.00 4.00
6669 8426 5.069648 TGTGCCAAAATTAACCTGTGAATGA 59.930 36.000 0.00 0.00 0.00 2.57
6671 8428 6.146021 GTGCCAAAATTAACCTGTGAATGAAG 59.854 38.462 0.00 0.00 0.00 3.02
6705 8463 5.566395 CGTTTTAATCGGGAACAAAACTAGC 59.434 40.000 14.16 0.00 0.00 3.42
6731 8492 8.810990 AGTAGTATTACTGAACTAGCTGAACT 57.189 34.615 6.60 0.00 38.69 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 0.811219 CGTCGACATGGGCATGACAT 60.811 55.000 17.16 0.00 41.20 3.06
6 7 1.153647 GACGTCGACATGGGCATGA 60.154 57.895 17.16 0.00 41.20 3.07
7 8 1.153568 AGACGTCGACATGGGCATG 60.154 57.895 17.16 0.00 44.15 4.06
8 9 1.153568 CAGACGTCGACATGGGCAT 60.154 57.895 17.16 0.00 0.00 4.40
9 10 2.261361 CAGACGTCGACATGGGCA 59.739 61.111 17.16 0.00 0.00 5.36
10 11 1.805945 GTCAGACGTCGACATGGGC 60.806 63.158 25.25 0.87 33.43 5.36
11 12 1.514228 CGTCAGACGTCGACATGGG 60.514 63.158 27.54 15.09 36.74 4.00
12 13 4.057615 CGTCAGACGTCGACATGG 57.942 61.111 27.54 15.34 36.74 3.66
19 20 7.043158 CAAAATCTTGAAGAACGTCAGACGTC 61.043 42.308 28.26 20.13 44.03 4.34
20 21 5.276868 CAAAATCTTGAAGAACGTCAGACGT 60.277 40.000 23.14 23.14 45.60 4.34
25 26 4.878971 TGGTCAAAATCTTGAAGAACGTCA 59.121 37.500 0.00 0.00 43.18 4.35
32 33 6.985117 TCCTTCAATGGTCAAAATCTTGAAG 58.015 36.000 13.64 13.64 46.25 3.02
40 41 4.405358 ACTTTGCTCCTTCAATGGTCAAAA 59.595 37.500 0.00 0.00 33.84 2.44
41 42 3.960102 ACTTTGCTCCTTCAATGGTCAAA 59.040 39.130 0.00 0.00 33.50 2.69
51 52 3.879892 AGAGAAACACACTTTGCTCCTTC 59.120 43.478 0.00 0.00 0.00 3.46
94 97 1.760192 GTCCATTGCTCAAGCTCCAT 58.240 50.000 3.32 0.00 42.66 3.41
97 100 1.427020 GCGTCCATTGCTCAAGCTC 59.573 57.895 3.32 0.00 42.66 4.09
98 101 2.393768 CGCGTCCATTGCTCAAGCT 61.394 57.895 0.00 0.00 42.66 3.74
99 102 2.099062 CGCGTCCATTGCTCAAGC 59.901 61.111 0.00 0.00 42.50 4.01
100 103 2.099062 GCGCGTCCATTGCTCAAG 59.901 61.111 8.43 0.00 0.00 3.02
101 104 3.787676 CGCGCGTCCATTGCTCAA 61.788 61.111 24.19 0.00 0.00 3.02
103 106 4.505217 CACGCGCGTCCATTGCTC 62.505 66.667 35.61 0.00 0.00 4.26
127 130 0.731417 CATCTTGAAAGCCAGCGGAG 59.269 55.000 0.00 0.00 0.00 4.63
130 133 1.805254 CCCATCTTGAAAGCCAGCG 59.195 57.895 0.00 0.00 0.00 5.18
132 135 1.553706 AAGCCCATCTTGAAAGCCAG 58.446 50.000 0.00 0.00 32.79 4.85
173 176 2.353376 CCACTTTTGCGCACGTGG 60.353 61.111 27.77 27.77 40.71 4.94
178 181 3.910490 GCCACCCACTTTTGCGCA 61.910 61.111 5.66 5.66 0.00 6.09
179 182 4.662961 GGCCACCCACTTTTGCGC 62.663 66.667 0.00 0.00 0.00 6.09
182 185 1.388065 TTCACGGCCACCCACTTTTG 61.388 55.000 2.24 0.00 0.00 2.44
197 200 2.604614 GCTCATGTTTGTCGGGTTTCAC 60.605 50.000 0.00 0.00 0.00 3.18
230 359 4.452114 GCCAGGAACAAAATTAAGCCAAAG 59.548 41.667 0.00 0.00 0.00 2.77
245 374 4.165779 CGTATTGACAATTTGCCAGGAAC 58.834 43.478 5.89 0.00 0.00 3.62
246 375 3.192422 CCGTATTGACAATTTGCCAGGAA 59.808 43.478 5.89 0.00 0.00 3.36
247 376 2.752354 CCGTATTGACAATTTGCCAGGA 59.248 45.455 5.89 0.00 0.00 3.86
293 422 4.856487 CGAACACAATCGTATTGGCAATTT 59.144 37.500 19.21 3.39 38.01 1.82
296 425 3.463533 CGAACACAATCGTATTGGCAA 57.536 42.857 0.68 0.68 38.01 4.52
345 475 4.214545 CCCTTTAATTTCGTGTGTACTGCA 59.785 41.667 0.00 0.00 0.00 4.41
346 476 4.453136 TCCCTTTAATTTCGTGTGTACTGC 59.547 41.667 0.00 0.00 0.00 4.40
349 479 5.854866 GCTTTCCCTTTAATTTCGTGTGTAC 59.145 40.000 0.00 0.00 0.00 2.90
350 480 5.334260 CGCTTTCCCTTTAATTTCGTGTGTA 60.334 40.000 0.00 0.00 0.00 2.90
351 481 4.555906 CGCTTTCCCTTTAATTTCGTGTGT 60.556 41.667 0.00 0.00 0.00 3.72
352 482 3.911964 CGCTTTCCCTTTAATTTCGTGTG 59.088 43.478 0.00 0.00 0.00 3.82
354 484 3.498082 CCGCTTTCCCTTTAATTTCGTG 58.502 45.455 0.00 0.00 0.00 4.35
356 486 2.159296 CCCCGCTTTCCCTTTAATTTCG 60.159 50.000 0.00 0.00 0.00 3.46
397 560 2.421619 GCCCATCCGAATTCATCTCTC 58.578 52.381 6.22 0.00 0.00 3.20
399 562 1.202806 TGGCCCATCCGAATTCATCTC 60.203 52.381 0.00 0.00 37.80 2.75
401 564 0.954452 GTGGCCCATCCGAATTCATC 59.046 55.000 0.00 0.00 37.80 2.92
402 565 0.819259 CGTGGCCCATCCGAATTCAT 60.819 55.000 0.00 0.00 37.80 2.57
403 566 1.451207 CGTGGCCCATCCGAATTCA 60.451 57.895 0.00 0.00 37.80 2.57
404 567 2.834618 GCGTGGCCCATCCGAATTC 61.835 63.158 0.00 0.00 37.80 2.17
452 615 1.180029 GGTGCTTTGATGATGGTGCT 58.820 50.000 0.00 0.00 0.00 4.40
453 616 0.179156 CGGTGCTTTGATGATGGTGC 60.179 55.000 0.00 0.00 0.00 5.01
454 617 0.179156 GCGGTGCTTTGATGATGGTG 60.179 55.000 0.00 0.00 0.00 4.17
457 620 0.524816 GCTGCGGTGCTTTGATGATG 60.525 55.000 0.00 0.00 0.00 3.07
459 622 2.679934 CGCTGCGGTGCTTTGATGA 61.680 57.895 15.40 0.00 0.00 2.92
515 679 5.633601 GGATCGGGTTTTGTTTTTCTCATTC 59.366 40.000 0.00 0.00 0.00 2.67
516 680 5.069781 TGGATCGGGTTTTGTTTTTCTCATT 59.930 36.000 0.00 0.00 0.00 2.57
519 683 4.577834 TGGATCGGGTTTTGTTTTTCTC 57.422 40.909 0.00 0.00 0.00 2.87
520 684 4.832823 AGATGGATCGGGTTTTGTTTTTCT 59.167 37.500 0.00 0.00 0.00 2.52
521 685 5.134202 AGATGGATCGGGTTTTGTTTTTC 57.866 39.130 0.00 0.00 0.00 2.29
1017 1198 4.208686 GAGGGGTGGAGTAGCGCG 62.209 72.222 0.00 0.00 43.68 6.86
1305 1872 4.157120 CGAAGTCGGGGGCGGATT 62.157 66.667 0.00 0.00 35.37 3.01
1312 1879 0.804933 GGAATTCGTCGAAGTCGGGG 60.805 60.000 24.18 0.00 37.49 5.73
1318 1885 0.108520 TTCCGGGGAATTCGTCGAAG 60.109 55.000 13.88 0.00 0.00 3.79
1324 1891 1.355210 CGCATTTCCGGGGAATTCG 59.645 57.895 5.71 5.71 33.79 3.34
1325 1892 1.733526 CCGCATTTCCGGGGAATTC 59.266 57.895 0.00 0.00 44.46 2.17
1326 1893 3.933515 CCGCATTTCCGGGGAATT 58.066 55.556 0.00 0.00 44.46 2.17
1477 2079 1.302192 GGCGGCAGTACAGTCCAAA 60.302 57.895 3.07 0.00 0.00 3.28
1537 2139 2.969238 CGACATGATCCAGCCGCC 60.969 66.667 0.00 0.00 0.00 6.13
1562 2164 0.733566 TGGACGGACGCGTCATAAAC 60.734 55.000 37.26 23.30 40.34 2.01
1732 2334 2.350498 CCGAGAAAAACTGTGTTCACGT 59.650 45.455 16.81 0.00 36.50 4.49
1739 2341 5.967674 GCATATGATTCCGAGAAAAACTGTG 59.032 40.000 6.97 0.00 0.00 3.66
1748 2350 1.002430 GGGCTGCATATGATTCCGAGA 59.998 52.381 6.97 0.00 0.00 4.04
1771 2373 2.796735 GCACAACGTTAAACACCTTGGG 60.797 50.000 0.00 0.00 30.22 4.12
1774 2376 2.478879 GCAGCACAACGTTAAACACCTT 60.479 45.455 0.00 0.00 0.00 3.50
1775 2377 1.064952 GCAGCACAACGTTAAACACCT 59.935 47.619 0.00 0.00 0.00 4.00
1793 2395 2.016318 CTGACAACAGACCAACAAGCA 58.984 47.619 0.00 0.00 46.03 3.91
1804 2406 1.575576 GCAGCAGAGCCTGACAACAG 61.576 60.000 6.40 0.00 43.12 3.16
1806 2408 1.302351 AGCAGCAGAGCCTGACAAC 60.302 57.895 6.40 0.00 34.77 3.32
1961 2564 3.417069 TGACTGGGAGGTGTTTATGTG 57.583 47.619 0.00 0.00 0.00 3.21
1962 2565 4.447138 TTTGACTGGGAGGTGTTTATGT 57.553 40.909 0.00 0.00 0.00 2.29
1974 2577 4.096984 GCACATAGGAATCTTTTGACTGGG 59.903 45.833 0.00 0.00 0.00 4.45
1990 2596 2.756760 ACTGCCCTTCATTTGCACATAG 59.243 45.455 0.00 0.00 0.00 2.23
1992 2598 1.636148 ACTGCCCTTCATTTGCACAT 58.364 45.000 0.00 0.00 0.00 3.21
1996 2602 1.340889 TGACAACTGCCCTTCATTTGC 59.659 47.619 0.00 0.00 38.47 3.68
2013 2619 5.239359 AGTTTAAACGGACCAAAACTGAC 57.761 39.130 12.54 0.00 39.89 3.51
2017 2623 4.746729 ACCAAGTTTAAACGGACCAAAAC 58.253 39.130 16.42 0.00 33.11 2.43
2018 2624 5.402997 AACCAAGTTTAAACGGACCAAAA 57.597 34.783 16.42 0.00 0.00 2.44
2158 2764 6.575162 AACTTTTCAAACTGCCTACATAGG 57.425 37.500 0.09 0.09 46.42 2.57
2163 2769 5.758924 CCTGTAACTTTTCAAACTGCCTAC 58.241 41.667 0.00 0.00 0.00 3.18
2164 2770 4.277423 GCCTGTAACTTTTCAAACTGCCTA 59.723 41.667 0.00 0.00 0.00 3.93
2169 2775 5.914898 AACAGCCTGTAACTTTTCAAACT 57.085 34.783 0.00 0.00 0.00 2.66
2208 2814 9.077885 ACACAGACAAATCTTAAAATACCATGT 57.922 29.630 0.00 0.00 30.42 3.21
2209 2815 9.912634 AACACAGACAAATCTTAAAATACCATG 57.087 29.630 0.00 0.00 30.42 3.66
2211 2817 9.959749 GAAACACAGACAAATCTTAAAATACCA 57.040 29.630 0.00 0.00 30.42 3.25
2227 2833 5.751243 TTAGCCTTTCAAGAAACACAGAC 57.249 39.130 0.00 0.00 0.00 3.51
2281 2889 7.498900 TCCTTGCAATAACACTGTAGATATTGG 59.501 37.037 0.00 0.00 36.64 3.16
2291 2899 5.125100 ACATGTTCCTTGCAATAACACTG 57.875 39.130 22.56 21.31 36.06 3.66
2295 2903 8.986477 AATTTCTACATGTTCCTTGCAATAAC 57.014 30.769 2.30 14.71 0.00 1.89
2302 2910 9.357652 CATGGTTTAATTTCTACATGTTCCTTG 57.642 33.333 2.30 0.00 33.08 3.61
2308 2916 5.719085 TGGGCATGGTTTAATTTCTACATGT 59.281 36.000 2.69 2.69 38.29 3.21
2321 2929 3.778265 AGTACAAAGATGGGCATGGTTT 58.222 40.909 0.00 0.00 0.00 3.27
2324 2932 3.117888 ACCTAGTACAAAGATGGGCATGG 60.118 47.826 0.00 0.00 0.00 3.66
2325 2933 4.156455 ACCTAGTACAAAGATGGGCATG 57.844 45.455 0.00 0.00 0.00 4.06
2388 2996 7.287810 TCAGTATCTACATGCTCCTTACTACA 58.712 38.462 0.00 0.00 0.00 2.74
2389 2997 7.747155 TCAGTATCTACATGCTCCTTACTAC 57.253 40.000 0.00 0.00 0.00 2.73
2521 3230 7.744087 AAGACAAGCACATTCAACTGTATTA 57.256 32.000 0.00 0.00 0.00 0.98
2548 3257 6.312399 TGTGAAACATTTCAGTACATGGTC 57.688 37.500 7.30 0.00 45.67 4.02
2615 3324 5.084519 TCCTGCTTAGGTAAACTTCAGAGA 58.915 41.667 0.00 0.00 0.00 3.10
2628 3337 8.956426 TGTTCAACTAAATATTTCCTGCTTAGG 58.044 33.333 3.39 0.00 0.00 2.69
2633 3342 9.076596 GTCAATGTTCAACTAAATATTTCCTGC 57.923 33.333 3.39 0.00 0.00 4.85
2683 3392 3.628017 CCTGTAACTTTTCAAACTGCCG 58.372 45.455 0.00 0.00 0.00 5.69
2714 3423 7.985634 TTTGTTCAAGAAAGCACAGATAAAC 57.014 32.000 0.00 0.00 0.00 2.01
2800 3510 5.303845 ACCTAGTCCGAAAGATGGGTATAAC 59.696 44.000 0.00 0.00 0.00 1.89
2873 3583 6.910191 TCCTCCATGCTTGATCCTTTAAATA 58.090 36.000 0.22 0.00 0.00 1.40
2883 3593 1.202903 GCAGGATCCTCCATGCTTGAT 60.203 52.381 12.69 0.00 39.61 2.57
2896 3606 1.759445 TGAACAGAGGCTAGCAGGATC 59.241 52.381 18.24 8.60 0.00 3.36
2897 3607 1.871418 TGAACAGAGGCTAGCAGGAT 58.129 50.000 18.24 0.00 0.00 3.24
2902 3612 2.680312 TGTGATGAACAGAGGCTAGC 57.320 50.000 6.04 6.04 33.78 3.42
2989 3703 1.067915 CCCCAACCTGCAAACATTACG 60.068 52.381 0.00 0.00 0.00 3.18
2993 3707 1.133199 TCTTCCCCAACCTGCAAACAT 60.133 47.619 0.00 0.00 0.00 2.71
3047 3761 1.588932 CTTAGAATCAGCGCGCCGA 60.589 57.895 30.33 25.45 0.00 5.54
3050 3764 1.502163 ATGGCTTAGAATCAGCGCGC 61.502 55.000 26.66 26.66 38.24 6.86
3053 3767 4.751600 TGAACATATGGCTTAGAATCAGCG 59.248 41.667 7.80 0.00 38.24 5.18
3054 3768 6.429078 TCATGAACATATGGCTTAGAATCAGC 59.571 38.462 7.80 0.00 36.45 4.26
3073 3787 5.393352 GCCATTGCAAGAAGTACATCATGAA 60.393 40.000 4.94 0.00 37.47 2.57
3077 3791 3.419943 TGCCATTGCAAGAAGTACATCA 58.580 40.909 4.94 0.00 46.66 3.07
3141 3856 8.119845 TGTACATAATAAACATTGTAGCAAGCG 58.880 33.333 0.00 0.00 0.00 4.68
3362 4077 8.839343 GTTATGACATGATTTCATACATGGACA 58.161 33.333 0.00 0.00 45.31 4.02
3677 4392 2.596851 GCTGGCTCTGGGACTCCAA 61.597 63.158 0.00 0.00 43.51 3.53
3712 4427 1.055849 TTGCCCTGTAGAAGCAGTCA 58.944 50.000 0.00 0.00 37.89 3.41
3713 4428 2.012673 CATTGCCCTGTAGAAGCAGTC 58.987 52.381 0.00 0.00 37.89 3.51
3804 4528 3.945921 GGACAGTTTGGTTCCTATAAGGC 59.054 47.826 0.00 0.00 34.61 4.35
3805 4529 5.186198 CAGGACAGTTTGGTTCCTATAAGG 58.814 45.833 0.00 0.00 36.46 2.69
3807 4531 5.836024 ACAGGACAGTTTGGTTCCTATAA 57.164 39.130 0.00 0.00 0.00 0.98
3823 4547 1.408702 TGGAAAAGCAGCAAACAGGAC 59.591 47.619 0.00 0.00 0.00 3.85
3853 4577 6.574350 ACTTATCTGCACAGAGGTAATGTAC 58.426 40.000 6.50 0.00 41.33 2.90
3883 4607 2.642139 AGCATTCGCAGATGGTTTTG 57.358 45.000 0.00 0.00 42.27 2.44
3902 4626 3.006430 TCGGTGTTCTCAGATGCAACTAA 59.994 43.478 0.00 0.00 0.00 2.24
3940 4664 4.735338 CCAAGAAGAAACGAGCAAAAAGAC 59.265 41.667 0.00 0.00 0.00 3.01
4216 4940 6.877322 CGTCTTTTATTTAGGAACAGAGGGAA 59.123 38.462 0.00 0.00 0.00 3.97
4235 4959 3.859411 TGTTCCTGCAAAAACGTCTTT 57.141 38.095 0.00 0.00 0.00 2.52
4258 4990 6.546403 CAGAGGGAGTAGCATAGTACAACTTA 59.454 42.308 0.00 0.00 0.00 2.24
4267 4999 3.571590 AGGAACAGAGGGAGTAGCATAG 58.428 50.000 0.00 0.00 0.00 2.23
4289 5021 9.709495 TTTGAGCTGCAAAAATGTCTTATATTT 57.291 25.926 1.02 0.00 43.18 1.40
4369 5101 1.956477 ACAAGTTGTCAAGCATGGGAC 59.044 47.619 1.64 0.00 34.63 4.46
4486 5218 9.927081 AGAGAATGTTGTGAGGGATTTAATTAT 57.073 29.630 0.00 0.00 0.00 1.28
4492 5224 4.763793 CACAGAGAATGTTGTGAGGGATTT 59.236 41.667 0.00 0.00 45.79 2.17
4502 5234 9.003658 AGTTAACTTAATCCACAGAGAATGTTG 57.996 33.333 1.12 0.00 41.41 3.33
4551 5283 1.613836 AGGAGCAGCAAAGAAGTTGG 58.386 50.000 0.00 0.00 37.73 3.77
4603 5335 3.003763 ACCCTTCTCGTGGCTCCC 61.004 66.667 0.00 0.00 0.00 4.30
4652 5384 3.067180 CCTGAAGTTCTGTTGCATGTGTT 59.933 43.478 4.17 0.00 0.00 3.32
4653 5385 2.620115 CCTGAAGTTCTGTTGCATGTGT 59.380 45.455 4.17 0.00 0.00 3.72
4675 5407 6.803642 AGAATTTAATCTTGGATTCTGCTGC 58.196 36.000 0.00 0.00 37.44 5.25
4756 5488 2.224621 CCTATCCGTTGATGAATGGCCT 60.225 50.000 3.32 0.00 38.06 5.19
4783 5515 8.357402 GGAACAGATGTTGTACTTAAACCATTT 58.643 33.333 2.31 0.00 39.73 2.32
4910 5642 7.544217 CAGTTTTAATGTACCAAATAGGGCAAC 59.456 37.037 0.00 0.00 43.89 4.17
4954 5686 0.558712 AGGGGGCAGGTTTTGTGTTA 59.441 50.000 0.00 0.00 0.00 2.41
5018 5750 4.248859 CTGATGAAAGAACCGTCTGATGT 58.751 43.478 0.00 0.00 33.05 3.06
5020 5752 4.543590 ACTGATGAAAGAACCGTCTGAT 57.456 40.909 0.00 0.00 33.05 2.90
5026 5758 5.655488 ACTCTGATACTGATGAAAGAACCG 58.345 41.667 0.00 0.00 0.00 4.44
5035 5767 6.097554 ACTGTTCCCTAACTCTGATACTGATG 59.902 42.308 0.00 0.00 36.51 3.07
5043 5775 4.899457 TCTCAAACTGTTCCCTAACTCTGA 59.101 41.667 0.00 0.00 36.51 3.27
5095 5827 1.205655 TCACTTCTCGAATGGAGCCTG 59.794 52.381 0.00 0.00 42.82 4.85
5278 6010 1.347707 ACCTTTGAGAGCATCGAACCA 59.652 47.619 0.00 0.00 42.67 3.67
5290 6022 8.352942 ACTTGATAAAAGCAACTTACCTTTGAG 58.647 33.333 0.00 0.00 32.06 3.02
5304 6036 7.736447 ACTCCATATGCTACTTGATAAAAGC 57.264 36.000 0.00 0.00 35.51 3.51
5316 6048 5.231702 TCATGCATGAACTCCATATGCTA 57.768 39.130 26.87 0.00 45.53 3.49
5349 6090 7.560991 AGAGGGTATTTGATTTGATTATGCACA 59.439 33.333 0.00 0.00 0.00 4.57
5493 6236 0.953471 CGATTTCCGCCACTTCACCA 60.953 55.000 0.00 0.00 0.00 4.17
5520 6263 1.943116 GCTCAGCAGCTTCCTCGAGA 61.943 60.000 15.71 0.00 43.09 4.04
5553 6296 2.362120 CTGGGCTTCTTGGGCTGG 60.362 66.667 0.00 0.00 0.00 4.85
5568 6311 8.873830 CATGTTCTCAAGTACCTGTAATAACTG 58.126 37.037 0.00 0.00 0.00 3.16
5574 6317 4.041075 TGGCATGTTCTCAAGTACCTGTAA 59.959 41.667 0.00 0.00 0.00 2.41
5586 6329 5.819379 TGATAGACAGAAATGGCATGTTCTC 59.181 40.000 16.72 10.44 31.66 2.87
5610 6353 7.765695 TTATTTTGGAGCAGAATGAAAGAGT 57.234 32.000 0.00 0.00 39.69 3.24
5629 6374 9.705290 GAACAAACCATCAGTACCATTTTATTT 57.295 29.630 0.00 0.00 0.00 1.40
5635 6380 5.385198 ACAGAACAAACCATCAGTACCATT 58.615 37.500 0.00 0.00 0.00 3.16
5638 6383 7.065443 GGTATAACAGAACAAACCATCAGTACC 59.935 40.741 0.00 0.00 0.00 3.34
5640 6385 7.822334 CAGGTATAACAGAACAAACCATCAGTA 59.178 37.037 0.00 0.00 0.00 2.74
5646 6391 4.720046 TGCAGGTATAACAGAACAAACCA 58.280 39.130 0.00 0.00 0.00 3.67
5647 6392 4.760204 ACTGCAGGTATAACAGAACAAACC 59.240 41.667 19.93 0.00 35.38 3.27
5648 6393 5.941948 ACTGCAGGTATAACAGAACAAAC 57.058 39.130 19.93 0.00 35.38 2.93
5655 6400 6.650427 TCATAGGTACTGCAGGTATAACAG 57.350 41.667 19.93 1.61 41.52 3.16
5656 6401 6.610020 ACTTCATAGGTACTGCAGGTATAACA 59.390 38.462 19.93 0.00 41.52 2.41
5664 6412 5.078411 ACTGAACTTCATAGGTACTGCAG 57.922 43.478 13.48 13.48 41.52 4.41
5673 6421 4.733850 TCAGCGTGTACTGAACTTCATAG 58.266 43.478 0.00 0.00 43.59 2.23
5691 6439 1.145819 GTCATCCTGCCTCCTCAGC 59.854 63.158 0.00 0.00 32.87 4.26
5706 6454 2.616960 CAGATTTTCCACGATCGGTCA 58.383 47.619 20.98 0.00 0.00 4.02
5751 6499 1.134580 CGTCCTTCTGGCAGACATCAT 60.135 52.381 18.55 0.00 0.00 2.45
5756 6504 1.174783 TAGTCGTCCTTCTGGCAGAC 58.825 55.000 18.55 5.56 38.67 3.51
5772 6520 4.584743 TGTCCTATGAGATGATGCGTTAGT 59.415 41.667 0.00 0.00 0.00 2.24
5777 6525 2.323059 CGTGTCCTATGAGATGATGCG 58.677 52.381 0.00 0.00 0.00 4.73
5803 6552 2.289547 TGCTGGAACTTTGTTTAGACGC 59.710 45.455 0.00 0.00 0.00 5.19
5804 6553 3.311322 TGTGCTGGAACTTTGTTTAGACG 59.689 43.478 0.00 0.00 0.00 4.18
5807 6556 4.900635 AGTGTGCTGGAACTTTGTTTAG 57.099 40.909 0.00 0.00 0.00 1.85
5850 6599 5.644644 GAATTGGTTCAATGCTGACCTAAG 58.355 41.667 0.00 0.00 34.04 2.18
5903 6652 0.532417 GAGCAGCTACAGCATCCCAG 60.532 60.000 0.00 0.00 45.16 4.45
5913 6662 0.038159 AAGTCACCACGAGCAGCTAC 60.038 55.000 0.00 0.00 0.00 3.58
5922 6671 0.518636 CCTGATGCAAAGTCACCACG 59.481 55.000 0.00 0.00 0.00 4.94
6029 6786 3.803231 ACATGTCGCAAACTAACAACGTA 59.197 39.130 0.00 0.00 0.00 3.57
6030 6787 2.610374 ACATGTCGCAAACTAACAACGT 59.390 40.909 0.00 0.00 0.00 3.99
6082 6840 2.224606 CAATGGCTGACACAGTTCAGT 58.775 47.619 11.88 0.00 44.34 3.41
6088 6846 3.005050 ACAATGAACAATGGCTGACACAG 59.995 43.478 0.00 0.00 34.12 3.66
6159 6917 3.340928 TCATCATGAAGCCTGTGTTCAG 58.659 45.455 0.00 0.00 37.35 3.02
6163 6921 3.639672 TCATCATCATGAAGCCTGTGT 57.360 42.857 0.00 0.00 35.99 3.72
6166 6924 3.506455 GGGAATCATCATCATGAAGCCTG 59.494 47.826 0.00 0.00 42.53 4.85
6178 6936 1.284785 GGGTGGACAAGGGAATCATCA 59.715 52.381 0.00 0.00 0.00 3.07
6179 6937 1.410224 GGGGTGGACAAGGGAATCATC 60.410 57.143 0.00 0.00 0.00 2.92
6180 6938 0.631212 GGGGTGGACAAGGGAATCAT 59.369 55.000 0.00 0.00 0.00 2.45
6181 6939 0.477597 AGGGGTGGACAAGGGAATCA 60.478 55.000 0.00 0.00 0.00 2.57
6182 6940 0.704664 AAGGGGTGGACAAGGGAATC 59.295 55.000 0.00 0.00 0.00 2.52
6183 6941 1.167033 AAAGGGGTGGACAAGGGAAT 58.833 50.000 0.00 0.00 0.00 3.01
6184 6942 0.938192 AAAAGGGGTGGACAAGGGAA 59.062 50.000 0.00 0.00 0.00 3.97
6186 6944 0.105709 ACAAAAGGGGTGGACAAGGG 60.106 55.000 0.00 0.00 0.00 3.95
6191 6949 3.431626 CCTCAAAAACAAAAGGGGTGGAC 60.432 47.826 0.00 0.00 0.00 4.02
6193 6951 2.503765 ACCTCAAAAACAAAAGGGGTGG 59.496 45.455 0.00 0.00 32.97 4.61
6237 6996 5.703130 GGATCTCAAAGTTGAAGTACAAGCT 59.297 40.000 0.00 0.00 39.30 3.74
6290 7049 3.431486 GCCATTCCAAAACACAAAGGTCA 60.431 43.478 0.00 0.00 0.00 4.02
6299 7058 6.422400 GTCGAATTTTTAGCCATTCCAAAACA 59.578 34.615 0.00 0.00 0.00 2.83
6306 7065 4.965062 TGACGTCGAATTTTTAGCCATTC 58.035 39.130 11.62 0.00 0.00 2.67
6310 7069 4.657075 TTCTGACGTCGAATTTTTAGCC 57.343 40.909 11.62 0.00 0.00 3.93
6311 7070 7.409343 CCAAATTTCTGACGTCGAATTTTTAGC 60.409 37.037 23.17 0.00 0.00 3.09
6312 7071 7.060633 CCCAAATTTCTGACGTCGAATTTTTAG 59.939 37.037 23.17 19.68 0.00 1.85
6313 7072 6.858993 CCCAAATTTCTGACGTCGAATTTTTA 59.141 34.615 23.17 11.51 0.00 1.52
6314 7073 5.689961 CCCAAATTTCTGACGTCGAATTTTT 59.310 36.000 23.17 19.52 0.00 1.94
6315 7074 5.219633 CCCAAATTTCTGACGTCGAATTTT 58.780 37.500 23.17 22.76 0.00 1.82
6316 7075 4.794169 CCCAAATTTCTGACGTCGAATTT 58.206 39.130 21.42 21.42 0.00 1.82
6317 7076 3.365969 GCCCAAATTTCTGACGTCGAATT 60.366 43.478 18.67 16.65 0.00 2.17
6318 7077 2.161609 GCCCAAATTTCTGACGTCGAAT 59.838 45.455 18.67 12.65 0.00 3.34
6319 7078 1.533731 GCCCAAATTTCTGACGTCGAA 59.466 47.619 11.62 13.99 0.00 3.71
6320 7079 1.153353 GCCCAAATTTCTGACGTCGA 58.847 50.000 11.62 8.49 0.00 4.20
6321 7080 0.871722 TGCCCAAATTTCTGACGTCG 59.128 50.000 11.62 6.07 0.00 5.12
6322 7081 3.575965 ATTGCCCAAATTTCTGACGTC 57.424 42.857 9.11 9.11 0.00 4.34
6324 7083 8.542132 CAATATAAATTGCCCAAATTTCTGACG 58.458 33.333 0.00 0.00 43.57 4.35
6326 7085 7.498570 GCCAATATAAATTGCCCAAATTTCTGA 59.501 33.333 0.00 0.00 43.57 3.27
6329 7088 6.657888 CGCCAATATAAATTGCCCAAATTTC 58.342 36.000 0.00 0.00 43.57 2.17
6331 7090 4.514816 GCGCCAATATAAATTGCCCAAATT 59.485 37.500 0.00 0.00 41.06 1.82
6332 7091 4.064388 GCGCCAATATAAATTGCCCAAAT 58.936 39.130 0.00 0.00 41.06 2.32
6333 7092 3.462021 GCGCCAATATAAATTGCCCAAA 58.538 40.909 0.00 0.00 41.06 3.28
6334 7093 2.544694 CGCGCCAATATAAATTGCCCAA 60.545 45.455 0.00 0.00 41.06 4.12
6335 7094 1.000827 CGCGCCAATATAAATTGCCCA 60.001 47.619 0.00 0.00 41.06 5.36
6336 7095 1.268352 TCGCGCCAATATAAATTGCCC 59.732 47.619 0.00 0.00 41.06 5.36
6354 7122 3.504863 CAAACTGAATTTGCCATCCTCG 58.495 45.455 0.00 0.00 41.30 4.63
6369 7137 1.226916 TTGCCGTGCTTGCAAACTG 60.227 52.632 0.00 0.00 45.11 3.16
6388 7156 3.194542 CCGGTTCATATTTTGCCTGGAAA 59.805 43.478 0.00 0.00 0.00 3.13
6392 7160 1.408702 CCCCGGTTCATATTTTGCCTG 59.591 52.381 0.00 0.00 0.00 4.85
6393 7161 1.286553 TCCCCGGTTCATATTTTGCCT 59.713 47.619 0.00 0.00 0.00 4.75
6396 7164 3.290948 TCCTCCCCGGTTCATATTTTG 57.709 47.619 0.00 0.00 0.00 2.44
6401 7170 1.133915 GCAAATCCTCCCCGGTTCATA 60.134 52.381 0.00 0.00 0.00 2.15
6407 7176 1.829533 CATGGCAAATCCTCCCCGG 60.830 63.158 0.00 0.00 35.26 5.73
6408 7177 2.492773 GCATGGCAAATCCTCCCCG 61.493 63.158 0.00 0.00 35.26 5.73
6412 7181 1.358046 GCGAGCATGGCAAATCCTC 59.642 57.895 0.00 0.00 40.68 3.71
6413 7182 2.123428 GGCGAGCATGGCAAATCCT 61.123 57.895 0.00 0.00 43.90 3.24
6453 8191 1.673920 AGTCATTGGCAAAACGAACGT 59.326 42.857 3.01 0.00 0.00 3.99
6455 8193 6.576551 TTTTTAGTCATTGGCAAAACGAAC 57.423 33.333 3.01 0.00 0.00 3.95
6458 8196 6.640499 TCAGATTTTTAGTCATTGGCAAAACG 59.360 34.615 3.01 0.00 0.00 3.60
6471 8210 7.907214 ATCAAGCTAACGTCAGATTTTTAGT 57.093 32.000 0.00 0.00 0.00 2.24
6488 8227 1.807814 AAGGACCCGGATATCAAGCT 58.192 50.000 0.73 0.00 0.00 3.74
6498 8237 6.016610 CCATATATAAAACACAAAGGACCCGG 60.017 42.308 0.00 0.00 0.00 5.73
6499 8238 6.544564 ACCATATATAAAACACAAAGGACCCG 59.455 38.462 0.00 0.00 0.00 5.28
6500 8239 7.558444 TGACCATATATAAAACACAAAGGACCC 59.442 37.037 0.00 0.00 0.00 4.46
6501 8240 8.514330 TGACCATATATAAAACACAAAGGACC 57.486 34.615 0.00 0.00 0.00 4.46
6518 8257 8.800332 GCCATCTTTATCTCAAAATGACCATAT 58.200 33.333 0.00 0.00 0.00 1.78
6519 8258 7.041167 CGCCATCTTTATCTCAAAATGACCATA 60.041 37.037 0.00 0.00 0.00 2.74
6520 8259 6.238842 CGCCATCTTTATCTCAAAATGACCAT 60.239 38.462 0.00 0.00 0.00 3.55
6521 8260 5.066375 CGCCATCTTTATCTCAAAATGACCA 59.934 40.000 0.00 0.00 0.00 4.02
6522 8261 5.514279 CGCCATCTTTATCTCAAAATGACC 58.486 41.667 0.00 0.00 0.00 4.02
6523 8262 4.972440 GCGCCATCTTTATCTCAAAATGAC 59.028 41.667 0.00 0.00 0.00 3.06
6524 8263 4.260743 CGCGCCATCTTTATCTCAAAATGA 60.261 41.667 0.00 0.00 0.00 2.57
6525 8264 3.970610 CGCGCCATCTTTATCTCAAAATG 59.029 43.478 0.00 0.00 0.00 2.32
6545 8284 1.135112 CAAATAGGCTGAAAACCCCGC 60.135 52.381 0.00 0.00 0.00 6.13
6548 8287 7.280356 TCTAGTATCAAATAGGCTGAAAACCC 58.720 38.462 0.00 0.00 0.00 4.11
6549 8288 8.910351 ATCTAGTATCAAATAGGCTGAAAACC 57.090 34.615 0.00 0.00 0.00 3.27
6589 8329 6.381498 TGTGGAGAAAGGATTATGGTGTAA 57.619 37.500 0.00 0.00 0.00 2.41
6592 8332 3.629398 GCTGTGGAGAAAGGATTATGGTG 59.371 47.826 0.00 0.00 0.00 4.17
6594 8334 3.889815 TGCTGTGGAGAAAGGATTATGG 58.110 45.455 0.00 0.00 0.00 2.74
6597 8337 6.480763 TGTATTTGCTGTGGAGAAAGGATTA 58.519 36.000 0.00 0.00 0.00 1.75
6599 8339 4.922206 TGTATTTGCTGTGGAGAAAGGAT 58.078 39.130 0.00 0.00 0.00 3.24
6618 8358 5.585844 CAGGCAGTAACATGATGTCAATGTA 59.414 40.000 0.00 0.00 0.00 2.29
6627 8367 3.379372 GCACATTCAGGCAGTAACATGAT 59.621 43.478 0.00 0.00 0.00 2.45
6644 8384 5.543507 TTCACAGGTTAATTTTGGCACAT 57.456 34.783 0.00 0.00 39.30 3.21
6659 8416 8.970691 AACGATTTATTTTCTTCATTCACAGG 57.029 30.769 0.00 0.00 0.00 4.00
6671 8428 9.344309 TGTTCCCGATTAAAACGATTTATTTTC 57.656 29.630 0.00 0.00 31.33 2.29
6676 8433 8.351461 AGTTTTGTTCCCGATTAAAACGATTTA 58.649 29.630 0.00 0.00 43.85 1.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.