Multiple sequence alignment - TraesCS2D01G558700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G558700 chr2D 100.000 3742 0 0 1 3742 631743155 631746896 0.000000e+00 6911.0
1 TraesCS2D01G558700 chr2B 92.490 1225 58 16 1583 2786 775006073 775004862 0.000000e+00 1722.0
2 TraesCS2D01G558700 chr2B 84.802 329 34 10 1200 1523 775006540 775006223 2.170000e-82 316.0
3 TraesCS2D01G558700 chr2B 90.000 100 5 4 3640 3735 652615608 652615706 1.410000e-24 124.0
4 TraesCS2D01G558700 chr2A 98.937 847 8 1 2317 3163 759972715 759971870 0.000000e+00 1513.0
5 TraesCS2D01G558700 chr2A 82.657 542 38 25 3233 3742 759971548 759971031 2.670000e-116 429.0
6 TraesCS2D01G558700 chr2A 89.394 66 3 1 3547 3612 760930596 760930535 3.100000e-11 80.5
7 TraesCS2D01G558700 chr1D 82.937 715 79 25 112 790 70590253 70590960 4.130000e-169 604.0
8 TraesCS2D01G558700 chr7D 78.098 694 54 40 89 730 529069526 529070173 2.140000e-92 350.0
9 TraesCS2D01G558700 chr6B 77.712 507 74 20 115 607 109069996 109069515 1.320000e-69 274.0
10 TraesCS2D01G558700 chr6B 77.407 509 74 17 115 607 109111057 109111540 7.970000e-67 265.0
11 TraesCS2D01G558700 chr6B 76.752 314 56 13 279 581 624674927 624675234 3.870000e-35 159.0
12 TraesCS2D01G558700 chr5A 78.630 365 43 23 245 595 198138317 198138660 3.790000e-50 209.0
13 TraesCS2D01G558700 chr5A 80.000 270 34 18 375 631 693053294 693053032 8.260000e-42 182.0
14 TraesCS2D01G558700 chr5A 81.567 217 26 12 375 579 694011042 694010828 2.310000e-37 167.0
15 TraesCS2D01G558700 chr5A 92.982 57 2 2 736 790 198140136 198140192 8.610000e-12 82.4
16 TraesCS2D01G558700 chr6D 79.184 245 40 9 365 601 122682775 122682534 3.870000e-35 159.0
17 TraesCS2D01G558700 chr6D 80.808 99 13 5 3640 3733 144066151 144066248 5.180000e-09 73.1
18 TraesCS2D01G558700 chr5D 73.427 429 71 38 383 783 249536322 249535909 1.830000e-23 121.0
19 TraesCS2D01G558700 chr7B 84.906 106 11 3 3638 3742 246483447 246483548 6.610000e-18 102.0
20 TraesCS2D01G558700 chr3D 83.810 105 14 3 3640 3742 437190463 437190360 3.080000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G558700 chr2D 631743155 631746896 3741 False 6911 6911 100.000 1 3742 1 chr2D.!!$F1 3741
1 TraesCS2D01G558700 chr2B 775004862 775006540 1678 True 1019 1722 88.646 1200 2786 2 chr2B.!!$R1 1586
2 TraesCS2D01G558700 chr2A 759971031 759972715 1684 True 971 1513 90.797 2317 3742 2 chr2A.!!$R2 1425
3 TraesCS2D01G558700 chr1D 70590253 70590960 707 False 604 604 82.937 112 790 1 chr1D.!!$F1 678
4 TraesCS2D01G558700 chr7D 529069526 529070173 647 False 350 350 78.098 89 730 1 chr7D.!!$F1 641

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
958 1035 0.035725 CACCCGAGGAAACCCTAACC 60.036 60.0 0.00 0.0 33.25 2.85 F
1013 1090 0.039617 GCGGAGATGGAGACGATGAG 60.040 60.0 0.00 0.0 0.00 2.90 F
1014 1091 0.039617 CGGAGATGGAGACGATGAGC 60.040 60.0 0.00 0.0 0.00 4.26 F
1068 1145 0.108186 ACGAAGATGGCGCATCAAGA 60.108 50.0 10.83 0.0 42.72 3.02 F
1945 2162 0.114954 TTCCCCATCCTTTTGCTGCT 59.885 50.0 0.00 0.0 0.00 4.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1835 2052 0.320683 TGCGATTATGATCTGCCCCG 60.321 55.000 10.24 0.0 33.69 5.73 R
2172 2392 0.465460 GTGACCAGACCAGCCAACAA 60.465 55.000 0.00 0.0 0.00 2.83 R
2238 2458 1.000938 GACTTTGGAAGCCAGCACTTG 60.001 52.381 0.00 0.0 33.81 3.16 R
2302 2522 1.128200 ATGCTTGTAGGGGATGCGTA 58.872 50.000 0.00 0.0 0.00 4.42 R
3574 4055 0.393077 ATATAGGGCGAGGTGTGTGC 59.607 55.000 0.00 0.0 0.00 4.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
69 70 5.286438 AGGGTTTTCTTCGTTTTTATGTGC 58.714 37.500 0.00 0.00 0.00 4.57
70 71 5.044558 GGGTTTTCTTCGTTTTTATGTGCA 58.955 37.500 0.00 0.00 0.00 4.57
71 72 5.694458 GGGTTTTCTTCGTTTTTATGTGCAT 59.306 36.000 0.00 0.00 0.00 3.96
72 73 6.201997 GGGTTTTCTTCGTTTTTATGTGCATT 59.798 34.615 0.00 0.00 0.00 3.56
73 74 7.254624 GGGTTTTCTTCGTTTTTATGTGCATTT 60.255 33.333 0.00 0.00 0.00 2.32
74 75 8.119845 GGTTTTCTTCGTTTTTATGTGCATTTT 58.880 29.630 0.00 0.00 0.00 1.82
75 76 9.484326 GTTTTCTTCGTTTTTATGTGCATTTTT 57.516 25.926 0.00 0.00 0.00 1.94
291 302 3.011566 ACACACCTTCAACATTGTCCA 57.988 42.857 0.00 0.00 0.00 4.02
519 540 8.925161 TTTCAGACCTTGTTCAACATTTTTAG 57.075 30.769 0.00 0.00 0.00 1.85
725 801 9.853921 GCAAAAATGAGAACATAAAACAGAAAG 57.146 29.630 0.00 0.00 35.50 2.62
791 868 3.350163 CCATCTGGGGGTGCCCTT 61.350 66.667 7.26 0.00 44.66 3.95
792 869 2.006415 CCATCTGGGGGTGCCCTTA 61.006 63.158 7.26 0.00 44.66 2.69
793 870 1.533711 CATCTGGGGGTGCCCTTAG 59.466 63.158 7.26 6.16 44.66 2.18
794 871 1.697754 ATCTGGGGGTGCCCTTAGG 60.698 63.158 7.26 0.00 44.66 2.69
795 872 2.208562 ATCTGGGGGTGCCCTTAGGA 62.209 60.000 0.00 1.93 44.66 2.94
796 873 2.612746 TGGGGGTGCCCTTAGGAC 60.613 66.667 0.00 0.00 44.66 3.85
797 874 2.612746 GGGGGTGCCCTTAGGACA 60.613 66.667 0.00 0.00 44.66 4.02
798 875 2.235761 GGGGGTGCCCTTAGGACAA 61.236 63.158 0.00 0.00 44.66 3.18
799 876 1.580994 GGGGGTGCCCTTAGGACAAT 61.581 60.000 0.00 0.00 44.66 2.71
800 877 0.395724 GGGGTGCCCTTAGGACAATG 60.396 60.000 0.00 0.00 41.34 2.82
801 878 1.037579 GGGTGCCCTTAGGACAATGC 61.038 60.000 0.00 0.00 33.47 3.56
802 879 1.037579 GGTGCCCTTAGGACAATGCC 61.038 60.000 0.00 0.00 33.47 4.40
803 880 1.037579 GTGCCCTTAGGACAATGCCC 61.038 60.000 0.00 0.00 33.47 5.36
804 881 1.455773 GCCCTTAGGACAATGCCCC 60.456 63.158 0.00 0.00 33.47 5.80
805 882 1.937924 GCCCTTAGGACAATGCCCCT 61.938 60.000 0.00 0.68 36.60 4.79
806 883 0.183731 CCCTTAGGACAATGCCCCTC 59.816 60.000 0.00 0.00 34.11 4.30
807 884 0.183731 CCTTAGGACAATGCCCCTCC 59.816 60.000 0.00 0.00 34.11 4.30
808 885 1.216990 CTTAGGACAATGCCCCTCCT 58.783 55.000 0.00 0.00 38.10 3.69
809 886 1.566231 CTTAGGACAATGCCCCTCCTT 59.434 52.381 0.00 0.00 35.87 3.36
810 887 1.213296 TAGGACAATGCCCCTCCTTC 58.787 55.000 0.00 0.00 35.87 3.46
811 888 1.452108 GGACAATGCCCCTCCTTCG 60.452 63.158 0.00 0.00 0.00 3.79
812 889 2.044946 ACAATGCCCCTCCTTCGC 60.045 61.111 0.00 0.00 0.00 4.70
813 890 3.204827 CAATGCCCCTCCTTCGCG 61.205 66.667 0.00 0.00 0.00 5.87
814 891 4.489771 AATGCCCCTCCTTCGCGG 62.490 66.667 6.13 0.00 0.00 6.46
818 895 4.016706 CCCCTCCTTCGCGGTTGT 62.017 66.667 6.13 0.00 0.00 3.32
819 896 2.742372 CCCTCCTTCGCGGTTGTG 60.742 66.667 6.13 0.00 0.00 3.33
820 897 2.030562 CCTCCTTCGCGGTTGTGT 59.969 61.111 6.13 0.00 0.00 3.72
821 898 2.027625 CCTCCTTCGCGGTTGTGTC 61.028 63.158 6.13 0.00 0.00 3.67
822 899 2.355363 TCCTTCGCGGTTGTGTCG 60.355 61.111 6.13 0.00 0.00 4.35
823 900 2.355363 CCTTCGCGGTTGTGTCGA 60.355 61.111 6.13 0.00 0.00 4.20
824 901 1.952133 CCTTCGCGGTTGTGTCGAA 60.952 57.895 6.13 0.00 39.51 3.71
825 902 1.289109 CCTTCGCGGTTGTGTCGAAT 61.289 55.000 6.13 0.00 40.72 3.34
826 903 0.511221 CTTCGCGGTTGTGTCGAATT 59.489 50.000 6.13 0.00 40.72 2.17
827 904 0.938713 TTCGCGGTTGTGTCGAATTT 59.061 45.000 6.13 0.00 37.31 1.82
828 905 0.233590 TCGCGGTTGTGTCGAATTTG 59.766 50.000 6.13 0.00 0.00 2.32
829 906 0.041663 CGCGGTTGTGTCGAATTTGT 60.042 50.000 0.00 0.00 0.00 2.83
830 907 1.595976 CGCGGTTGTGTCGAATTTGTT 60.596 47.619 0.00 0.00 0.00 2.83
831 908 1.778591 GCGGTTGTGTCGAATTTGTTG 59.221 47.619 0.00 0.00 0.00 3.33
832 909 2.539953 GCGGTTGTGTCGAATTTGTTGA 60.540 45.455 0.00 0.00 0.00 3.18
833 910 3.288242 CGGTTGTGTCGAATTTGTTGAG 58.712 45.455 0.00 0.00 0.00 3.02
834 911 3.001838 CGGTTGTGTCGAATTTGTTGAGA 59.998 43.478 0.00 0.00 0.00 3.27
835 912 4.495019 CGGTTGTGTCGAATTTGTTGAGAA 60.495 41.667 0.00 0.00 0.00 2.87
836 913 4.733405 GGTTGTGTCGAATTTGTTGAGAAC 59.267 41.667 0.00 0.00 0.00 3.01
837 914 5.328691 GTTGTGTCGAATTTGTTGAGAACA 58.671 37.500 0.00 0.00 40.21 3.18
848 925 3.334691 TGTTGAGAACAAAGGCCTATCG 58.665 45.455 5.16 0.00 38.72 2.92
849 926 3.244422 TGTTGAGAACAAAGGCCTATCGT 60.244 43.478 5.16 0.00 38.72 3.73
850 927 3.247006 TGAGAACAAAGGCCTATCGTC 57.753 47.619 5.16 1.45 0.00 4.20
851 928 2.093658 TGAGAACAAAGGCCTATCGTCC 60.094 50.000 5.16 0.00 0.00 4.79
852 929 1.906574 AGAACAAAGGCCTATCGTCCA 59.093 47.619 5.16 0.00 0.00 4.02
853 930 2.007608 GAACAAAGGCCTATCGTCCAC 58.992 52.381 5.16 0.00 0.00 4.02
854 931 0.108329 ACAAAGGCCTATCGTCCACG 60.108 55.000 5.16 0.00 41.45 4.94
855 932 0.810031 CAAAGGCCTATCGTCCACGG 60.810 60.000 5.16 0.00 40.29 4.94
856 933 2.588856 AAAGGCCTATCGTCCACGGC 62.589 60.000 5.16 0.00 41.75 5.68
858 935 4.603946 GCCTATCGTCCACGGCCC 62.604 72.222 0.00 0.00 40.29 5.80
859 936 3.151710 CCTATCGTCCACGGCCCA 61.152 66.667 0.00 0.00 40.29 5.36
860 937 2.106332 CTATCGTCCACGGCCCAC 59.894 66.667 0.00 0.00 40.29 4.61
861 938 3.441011 CTATCGTCCACGGCCCACC 62.441 68.421 0.00 0.00 40.29 4.61
871 948 2.113562 GGCCCACCCGTACACAAA 59.886 61.111 0.00 0.00 0.00 2.83
872 949 1.969589 GGCCCACCCGTACACAAAG 60.970 63.158 0.00 0.00 0.00 2.77
873 950 1.969589 GCCCACCCGTACACAAAGG 60.970 63.158 0.00 0.00 0.00 3.11
874 951 1.452801 CCCACCCGTACACAAAGGT 59.547 57.895 0.00 0.00 0.00 3.50
875 952 0.686224 CCCACCCGTACACAAAGGTA 59.314 55.000 0.00 0.00 0.00 3.08
876 953 1.279846 CCCACCCGTACACAAAGGTAT 59.720 52.381 0.00 0.00 0.00 2.73
877 954 2.500910 CCCACCCGTACACAAAGGTATA 59.499 50.000 0.00 0.00 0.00 1.47
878 955 3.431207 CCCACCCGTACACAAAGGTATAG 60.431 52.174 0.00 0.00 0.00 1.31
879 956 3.192466 CACCCGTACACAAAGGTATAGC 58.808 50.000 0.00 0.00 0.00 2.97
880 957 2.169144 ACCCGTACACAAAGGTATAGCC 59.831 50.000 0.00 0.00 37.58 3.93
881 958 2.168936 CCCGTACACAAAGGTATAGCCA 59.831 50.000 0.00 0.00 40.61 4.75
882 959 3.369681 CCCGTACACAAAGGTATAGCCAA 60.370 47.826 0.00 0.00 40.61 4.52
883 960 3.619929 CCGTACACAAAGGTATAGCCAAC 59.380 47.826 0.00 0.00 40.61 3.77
884 961 3.619929 CGTACACAAAGGTATAGCCAACC 59.380 47.826 0.00 0.00 40.61 3.77
885 962 2.706890 ACACAAAGGTATAGCCAACCG 58.293 47.619 0.00 0.00 42.15 4.44
886 963 1.400494 CACAAAGGTATAGCCAACCGC 59.600 52.381 0.00 0.00 42.15 5.68
887 964 1.021968 CAAAGGTATAGCCAACCGCC 58.978 55.000 0.00 0.00 42.15 6.13
888 965 0.106868 AAAGGTATAGCCAACCGCCC 60.107 55.000 0.00 0.00 42.15 6.13
889 966 1.991339 AAGGTATAGCCAACCGCCCC 61.991 60.000 0.00 0.00 42.15 5.80
890 967 2.280592 GTATAGCCAACCGCCCCG 60.281 66.667 0.00 0.00 38.78 5.73
891 968 2.764967 TATAGCCAACCGCCCCGT 60.765 61.111 0.00 0.00 38.78 5.28
892 969 1.457267 TATAGCCAACCGCCCCGTA 60.457 57.895 0.00 0.00 38.78 4.02
893 970 1.047596 TATAGCCAACCGCCCCGTAA 61.048 55.000 0.00 0.00 38.78 3.18
894 971 1.912826 ATAGCCAACCGCCCCGTAAA 61.913 55.000 0.00 0.00 38.78 2.01
895 972 2.121992 TAGCCAACCGCCCCGTAAAA 62.122 55.000 0.00 0.00 38.78 1.52
896 973 2.562876 GCCAACCGCCCCGTAAAAA 61.563 57.895 0.00 0.00 0.00 1.94
925 1002 9.594478 AAGTAAGAAAGAGAGAAAAGCTATAGC 57.406 33.333 17.33 17.33 42.49 2.97
937 1014 2.240493 GCTATAGCGAAGGGAAAGCA 57.760 50.000 9.40 0.00 0.00 3.91
938 1015 2.139118 GCTATAGCGAAGGGAAAGCAG 58.861 52.381 9.40 0.00 0.00 4.24
939 1016 2.139118 CTATAGCGAAGGGAAAGCAGC 58.861 52.381 0.00 0.00 0.00 5.25
940 1017 0.253044 ATAGCGAAGGGAAAGCAGCA 59.747 50.000 0.00 0.00 0.00 4.41
941 1018 0.673644 TAGCGAAGGGAAAGCAGCAC 60.674 55.000 0.00 0.00 0.00 4.40
942 1019 2.982744 GCGAAGGGAAAGCAGCACC 61.983 63.158 0.00 0.00 0.00 5.01
943 1020 2.335712 CGAAGGGAAAGCAGCACCC 61.336 63.158 12.64 12.64 43.55 4.61
946 1023 2.747855 GGGAAAGCAGCACCCGAG 60.748 66.667 6.58 0.00 34.03 4.63
947 1024 2.747855 GGAAAGCAGCACCCGAGG 60.748 66.667 0.00 0.00 0.00 4.63
948 1025 2.347490 GAAAGCAGCACCCGAGGA 59.653 61.111 0.00 0.00 0.00 3.71
949 1026 1.302511 GAAAGCAGCACCCGAGGAA 60.303 57.895 0.00 0.00 0.00 3.36
950 1027 0.889186 GAAAGCAGCACCCGAGGAAA 60.889 55.000 0.00 0.00 0.00 3.13
951 1028 1.172812 AAAGCAGCACCCGAGGAAAC 61.173 55.000 0.00 0.00 0.00 2.78
952 1029 3.056328 GCAGCACCCGAGGAAACC 61.056 66.667 0.00 0.00 0.00 3.27
953 1030 2.359975 CAGCACCCGAGGAAACCC 60.360 66.667 0.00 0.00 0.00 4.11
954 1031 2.529389 AGCACCCGAGGAAACCCT 60.529 61.111 0.00 0.00 36.57 4.34
955 1032 1.229400 AGCACCCGAGGAAACCCTA 60.229 57.895 0.00 0.00 33.25 3.53
956 1033 0.838987 AGCACCCGAGGAAACCCTAA 60.839 55.000 0.00 0.00 33.25 2.69
957 1034 0.675837 GCACCCGAGGAAACCCTAAC 60.676 60.000 0.00 0.00 33.25 2.34
958 1035 0.035725 CACCCGAGGAAACCCTAACC 60.036 60.000 0.00 0.00 33.25 2.85
959 1036 0.474273 ACCCGAGGAAACCCTAACCA 60.474 55.000 0.00 0.00 33.25 3.67
960 1037 0.035725 CCCGAGGAAACCCTAACCAC 60.036 60.000 0.00 0.00 33.25 4.16
961 1038 0.035725 CCGAGGAAACCCTAACCACC 60.036 60.000 0.00 0.00 33.25 4.61
962 1039 0.688487 CGAGGAAACCCTAACCACCA 59.312 55.000 0.00 0.00 33.25 4.17
963 1040 1.280998 CGAGGAAACCCTAACCACCAT 59.719 52.381 0.00 0.00 33.25 3.55
964 1041 2.679930 CGAGGAAACCCTAACCACCATC 60.680 54.545 0.00 0.00 33.25 3.51
965 1042 1.280998 AGGAAACCCTAACCACCATCG 59.719 52.381 0.00 0.00 30.72 3.84
966 1043 1.279846 GGAAACCCTAACCACCATCGA 59.720 52.381 0.00 0.00 0.00 3.59
967 1044 2.092592 GGAAACCCTAACCACCATCGAT 60.093 50.000 0.00 0.00 0.00 3.59
968 1045 3.617284 GAAACCCTAACCACCATCGATT 58.383 45.455 0.00 0.00 0.00 3.34
969 1046 2.710096 ACCCTAACCACCATCGATTG 57.290 50.000 0.00 0.00 0.00 2.67
970 1047 2.193127 ACCCTAACCACCATCGATTGA 58.807 47.619 3.08 0.00 0.00 2.57
971 1048 2.777692 ACCCTAACCACCATCGATTGAT 59.222 45.455 3.08 0.00 34.28 2.57
972 1049 3.202151 ACCCTAACCACCATCGATTGATT 59.798 43.478 3.08 0.00 30.49 2.57
973 1050 3.565482 CCCTAACCACCATCGATTGATTG 59.435 47.826 3.08 0.00 30.49 2.67
974 1051 4.450976 CCTAACCACCATCGATTGATTGA 58.549 43.478 3.08 0.00 30.49 2.57
975 1052 4.512944 CCTAACCACCATCGATTGATTGAG 59.487 45.833 3.08 0.00 30.49 3.02
976 1053 2.292267 ACCACCATCGATTGATTGAGC 58.708 47.619 3.08 0.00 30.49 4.26
977 1054 1.262417 CCACCATCGATTGATTGAGCG 59.738 52.381 3.08 0.00 30.49 5.03
978 1055 1.262417 CACCATCGATTGATTGAGCGG 59.738 52.381 3.08 0.00 30.49 5.52
979 1056 0.236711 CCATCGATTGATTGAGCGGC 59.763 55.000 0.00 0.00 30.49 6.53
980 1057 0.110956 CATCGATTGATTGAGCGGCG 60.111 55.000 0.51 0.51 30.49 6.46
981 1058 1.224069 ATCGATTGATTGAGCGGCGG 61.224 55.000 9.78 0.00 0.00 6.13
982 1059 2.329339 GATTGATTGAGCGGCGGC 59.671 61.111 9.78 8.43 40.37 6.53
983 1060 3.512287 GATTGATTGAGCGGCGGCG 62.512 63.158 28.70 28.70 46.35 6.46
1005 1082 4.292178 GGAGCGGCGGAGATGGAG 62.292 72.222 9.78 0.00 0.00 3.86
1006 1083 3.219928 GAGCGGCGGAGATGGAGA 61.220 66.667 9.78 0.00 0.00 3.71
1007 1084 3.492311 GAGCGGCGGAGATGGAGAC 62.492 68.421 9.78 0.00 0.00 3.36
1008 1085 4.933064 GCGGCGGAGATGGAGACG 62.933 72.222 9.78 0.00 39.77 4.18
1009 1086 3.209812 CGGCGGAGATGGAGACGA 61.210 66.667 0.00 0.00 38.98 4.20
1010 1087 2.556459 CGGCGGAGATGGAGACGAT 61.556 63.158 0.00 0.00 38.98 3.73
1011 1088 1.006805 GGCGGAGATGGAGACGATG 60.007 63.158 0.00 0.00 0.00 3.84
1012 1089 1.456196 GGCGGAGATGGAGACGATGA 61.456 60.000 0.00 0.00 0.00 2.92
1013 1090 0.039617 GCGGAGATGGAGACGATGAG 60.040 60.000 0.00 0.00 0.00 2.90
1014 1091 0.039617 CGGAGATGGAGACGATGAGC 60.040 60.000 0.00 0.00 0.00 4.26
1015 1092 1.035923 GGAGATGGAGACGATGAGCA 58.964 55.000 0.00 0.00 0.00 4.26
1016 1093 1.000385 GGAGATGGAGACGATGAGCAG 60.000 57.143 0.00 0.00 0.00 4.24
1017 1094 0.388659 AGATGGAGACGATGAGCAGC 59.611 55.000 0.00 0.00 0.00 5.25
1018 1095 0.938637 GATGGAGACGATGAGCAGCG 60.939 60.000 6.59 6.59 46.76 5.18
1019 1096 2.279120 GGAGACGATGAGCAGCGG 60.279 66.667 12.89 0.00 45.50 5.52
1020 1097 2.775856 GGAGACGATGAGCAGCGGA 61.776 63.158 12.89 0.00 45.50 5.54
1021 1098 1.361993 GAGACGATGAGCAGCGGAT 59.638 57.895 12.89 0.16 45.50 4.18
1022 1099 0.249238 GAGACGATGAGCAGCGGATT 60.249 55.000 12.89 0.00 45.50 3.01
1023 1100 0.249238 AGACGATGAGCAGCGGATTC 60.249 55.000 12.89 1.45 45.50 2.52
1024 1101 1.543941 GACGATGAGCAGCGGATTCG 61.544 60.000 12.89 8.06 45.50 3.34
1034 1111 2.435234 CGGATTCGCGGGGTTCAA 60.435 61.111 6.13 0.00 0.00 2.69
1035 1112 2.461110 CGGATTCGCGGGGTTCAAG 61.461 63.158 6.13 0.00 0.00 3.02
1036 1113 1.078708 GGATTCGCGGGGTTCAAGA 60.079 57.895 6.13 0.00 0.00 3.02
1037 1114 0.463833 GGATTCGCGGGGTTCAAGAT 60.464 55.000 6.13 0.00 0.00 2.40
1038 1115 0.938008 GATTCGCGGGGTTCAAGATC 59.062 55.000 6.13 0.00 0.00 2.75
1039 1116 0.541863 ATTCGCGGGGTTCAAGATCT 59.458 50.000 6.13 0.00 0.00 2.75
1040 1117 1.187974 TTCGCGGGGTTCAAGATCTA 58.812 50.000 6.13 0.00 0.00 1.98
1041 1118 0.458669 TCGCGGGGTTCAAGATCTAC 59.541 55.000 6.13 0.00 0.00 2.59
1042 1119 0.174845 CGCGGGGTTCAAGATCTACA 59.825 55.000 0.00 0.00 0.00 2.74
1043 1120 1.653151 GCGGGGTTCAAGATCTACAC 58.347 55.000 0.00 0.00 0.00 2.90
1044 1121 1.742750 GCGGGGTTCAAGATCTACACC 60.743 57.143 5.43 5.43 31.86 4.16
1045 1122 1.553248 CGGGGTTCAAGATCTACACCA 59.447 52.381 14.45 0.00 34.98 4.17
1046 1123 2.170607 CGGGGTTCAAGATCTACACCAT 59.829 50.000 14.45 0.00 34.98 3.55
1047 1124 3.741388 CGGGGTTCAAGATCTACACCATC 60.741 52.174 14.45 7.81 34.98 3.51
1048 1125 3.458189 GGGTTCAAGATCTACACCATCG 58.542 50.000 16.11 0.00 0.00 3.84
1049 1126 3.132289 GGGTTCAAGATCTACACCATCGA 59.868 47.826 16.11 0.00 0.00 3.59
1050 1127 4.113354 GGTTCAAGATCTACACCATCGAC 58.887 47.826 11.39 0.00 0.00 4.20
1051 1128 3.692791 TCAAGATCTACACCATCGACG 57.307 47.619 0.00 0.00 0.00 5.12
1052 1129 3.275999 TCAAGATCTACACCATCGACGA 58.724 45.455 0.00 0.00 0.00 4.20
1053 1130 3.692593 TCAAGATCTACACCATCGACGAA 59.307 43.478 0.00 0.00 0.00 3.85
1054 1131 3.972950 AGATCTACACCATCGACGAAG 57.027 47.619 0.00 0.00 0.00 3.79
1055 1132 3.542648 AGATCTACACCATCGACGAAGA 58.457 45.455 0.00 0.00 0.00 2.87
1056 1133 4.138290 AGATCTACACCATCGACGAAGAT 58.862 43.478 0.00 4.29 0.00 2.40
1057 1134 3.692791 TCTACACCATCGACGAAGATG 57.307 47.619 0.00 14.68 45.56 2.90
1061 1138 2.923854 CATCGACGAAGATGGCGC 59.076 61.111 0.00 0.00 43.07 6.53
1062 1139 1.878069 CATCGACGAAGATGGCGCA 60.878 57.895 10.83 0.00 43.07 6.09
1063 1140 1.068083 ATCGACGAAGATGGCGCAT 59.932 52.632 10.83 0.00 0.00 4.73
1064 1141 0.941463 ATCGACGAAGATGGCGCATC 60.941 55.000 10.83 10.70 40.80 3.91
1065 1142 1.878069 CGACGAAGATGGCGCATCA 60.878 57.895 10.83 0.00 42.72 3.07
1066 1143 1.420641 CGACGAAGATGGCGCATCAA 61.421 55.000 10.83 0.00 42.72 2.57
1067 1144 0.302890 GACGAAGATGGCGCATCAAG 59.697 55.000 10.83 8.34 42.72 3.02
1068 1145 0.108186 ACGAAGATGGCGCATCAAGA 60.108 50.000 10.83 0.00 42.72 3.02
1069 1146 0.302890 CGAAGATGGCGCATCAAGAC 59.697 55.000 10.83 3.35 42.72 3.01
1070 1147 0.659957 GAAGATGGCGCATCAAGACC 59.340 55.000 10.83 0.00 42.72 3.85
1071 1148 1.091771 AAGATGGCGCATCAAGACCG 61.092 55.000 10.83 0.00 42.72 4.79
1072 1149 2.514592 ATGGCGCATCAAGACCGG 60.515 61.111 10.83 0.00 0.00 5.28
1106 1183 4.668118 GGTTGCGACGACCGGGAA 62.668 66.667 6.32 0.00 39.04 3.97
1107 1184 3.110178 GTTGCGACGACCGGGAAG 61.110 66.667 6.32 0.00 39.04 3.46
1110 1187 4.493747 GCGACGACCGGGAAGGAG 62.494 72.222 6.32 0.00 45.00 3.69
1111 1188 3.823330 CGACGACCGGGAAGGAGG 61.823 72.222 6.32 0.00 45.00 4.30
1112 1189 2.679287 GACGACCGGGAAGGAGGT 60.679 66.667 6.32 0.00 45.00 3.85
1116 1193 3.003763 ACCGGGAAGGAGGTCAGC 61.004 66.667 6.32 0.00 45.00 4.26
1117 1194 3.003173 CCGGGAAGGAGGTCAGCA 61.003 66.667 0.00 0.00 45.00 4.41
1118 1195 2.581354 CGGGAAGGAGGTCAGCAG 59.419 66.667 0.00 0.00 0.00 4.24
1119 1196 2.270527 GGGAAGGAGGTCAGCAGC 59.729 66.667 0.00 0.00 0.00 5.25
1120 1197 2.596851 GGGAAGGAGGTCAGCAGCA 61.597 63.158 0.00 0.00 0.00 4.41
1121 1198 1.078567 GGAAGGAGGTCAGCAGCAG 60.079 63.158 0.00 0.00 0.00 4.24
1122 1199 1.744741 GAAGGAGGTCAGCAGCAGC 60.745 63.158 0.00 0.00 42.56 5.25
1123 1200 2.460662 GAAGGAGGTCAGCAGCAGCA 62.461 60.000 3.17 0.00 45.49 4.41
1124 1201 2.436292 GGAGGTCAGCAGCAGCAG 60.436 66.667 3.17 0.00 45.49 4.24
1125 1202 3.126225 GAGGTCAGCAGCAGCAGC 61.126 66.667 3.17 0.46 45.49 5.25
1126 1203 3.896356 GAGGTCAGCAGCAGCAGCA 62.896 63.158 12.92 0.00 45.49 4.41
1127 1204 2.981909 GGTCAGCAGCAGCAGCAA 60.982 61.111 12.92 0.00 45.49 3.91
1128 1205 2.561885 GTCAGCAGCAGCAGCAAG 59.438 61.111 12.92 4.28 45.49 4.01
1129 1206 2.671963 TCAGCAGCAGCAGCAAGG 60.672 61.111 12.92 1.29 45.49 3.61
1130 1207 2.984155 CAGCAGCAGCAGCAAGGT 60.984 61.111 12.92 0.00 45.49 3.50
1131 1208 2.672307 AGCAGCAGCAGCAAGGTC 60.672 61.111 12.92 0.00 45.49 3.85
1132 1209 4.099170 GCAGCAGCAGCAAGGTCG 62.099 66.667 4.63 0.00 45.49 4.79
1133 1210 3.429141 CAGCAGCAGCAAGGTCGG 61.429 66.667 3.17 0.00 45.49 4.79
1134 1211 4.711949 AGCAGCAGCAAGGTCGGG 62.712 66.667 3.17 0.00 45.49 5.14
1139 1216 3.058160 CAGCAAGGTCGGGGCAAG 61.058 66.667 0.00 0.00 0.00 4.01
1142 1219 3.365265 CAAGGTCGGGGCAAGCAC 61.365 66.667 0.00 0.00 0.00 4.40
1143 1220 4.660938 AAGGTCGGGGCAAGCACC 62.661 66.667 2.46 2.46 35.80 5.01
1165 1242 3.471806 GGGAGGGCCGAGGTCTTC 61.472 72.222 0.00 0.00 33.83 2.87
1183 1260 3.538841 GCGATGCGAACCGGATAG 58.461 61.111 9.46 0.00 38.17 2.08
1185 1262 2.022129 CGATGCGAACCGGATAGGC 61.022 63.158 9.46 4.04 46.52 3.93
1186 1263 2.022129 GATGCGAACCGGATAGGCG 61.022 63.158 9.46 5.07 46.52 5.52
1187 1264 3.515316 ATGCGAACCGGATAGGCGG 62.515 63.158 9.46 0.00 46.52 6.13
1190 1267 3.908081 GAACCGGATAGGCGGCGA 61.908 66.667 12.98 0.00 46.52 5.54
1191 1268 3.435030 GAACCGGATAGGCGGCGAA 62.435 63.158 12.98 0.00 46.52 4.70
1192 1269 2.911332 GAACCGGATAGGCGGCGAAA 62.911 60.000 12.98 0.00 46.52 3.46
1193 1270 2.661866 CCGGATAGGCGGCGAAAG 60.662 66.667 12.98 0.00 0.00 2.62
1194 1271 2.661866 CGGATAGGCGGCGAAAGG 60.662 66.667 12.98 0.00 0.00 3.11
1195 1272 2.280865 GGATAGGCGGCGAAAGGG 60.281 66.667 12.98 0.00 0.00 3.95
1196 1273 2.973052 GATAGGCGGCGAAAGGGC 60.973 66.667 12.98 0.00 37.98 5.19
1197 1274 3.750373 GATAGGCGGCGAAAGGGCA 62.750 63.158 12.98 0.00 42.43 5.36
1198 1275 3.338275 ATAGGCGGCGAAAGGGCAA 62.338 57.895 12.98 0.00 42.43 4.52
1228 1305 1.068474 CCAACTTCTTCGCGATTCGT 58.932 50.000 10.88 1.98 39.67 3.85
1233 1310 2.993899 ACTTCTTCGCGATTCGTTCAAT 59.006 40.909 10.88 0.00 39.67 2.57
1234 1311 3.432252 ACTTCTTCGCGATTCGTTCAATT 59.568 39.130 10.88 0.00 39.67 2.32
1238 1315 2.333926 TCGCGATTCGTTCAATTCAGT 58.666 42.857 3.71 0.00 39.67 3.41
1241 1318 2.774007 CGATTCGTTCAATTCAGTGCC 58.226 47.619 0.00 0.00 0.00 5.01
1242 1319 2.416547 CGATTCGTTCAATTCAGTGCCT 59.583 45.455 0.00 0.00 0.00 4.75
1243 1320 3.725895 CGATTCGTTCAATTCAGTGCCTG 60.726 47.826 0.00 0.00 0.00 4.85
1245 1322 0.523072 CGTTCAATTCAGTGCCTGGG 59.477 55.000 0.00 0.00 31.51 4.45
1246 1323 1.881925 CGTTCAATTCAGTGCCTGGGA 60.882 52.381 0.00 0.00 31.51 4.37
1247 1324 2.238521 GTTCAATTCAGTGCCTGGGAA 58.761 47.619 0.00 0.00 31.51 3.97
1248 1325 2.205022 TCAATTCAGTGCCTGGGAAG 57.795 50.000 0.00 0.00 31.51 3.46
1249 1326 1.704628 TCAATTCAGTGCCTGGGAAGA 59.295 47.619 0.00 0.00 31.51 2.87
1250 1327 2.108075 TCAATTCAGTGCCTGGGAAGAA 59.892 45.455 6.77 6.77 31.51 2.52
1251 1328 2.490903 CAATTCAGTGCCTGGGAAGAAG 59.509 50.000 9.53 0.00 31.51 2.85
1252 1329 1.434188 TTCAGTGCCTGGGAAGAAGA 58.566 50.000 0.00 0.00 31.51 2.87
1253 1330 1.434188 TCAGTGCCTGGGAAGAAGAA 58.566 50.000 0.00 0.00 31.51 2.52
1254 1331 1.988107 TCAGTGCCTGGGAAGAAGAAT 59.012 47.619 0.00 0.00 31.51 2.40
1255 1332 2.026822 TCAGTGCCTGGGAAGAAGAATC 60.027 50.000 0.00 0.00 31.51 2.52
1256 1333 1.283321 AGTGCCTGGGAAGAAGAATCC 59.717 52.381 0.00 0.00 36.16 3.01
1257 1334 1.283321 GTGCCTGGGAAGAAGAATCCT 59.717 52.381 0.00 0.00 37.14 3.24
1262 1339 1.916181 TGGGAAGAAGAATCCTCCACC 59.084 52.381 0.00 0.00 37.84 4.61
1268 1345 2.024846 AGAAGAATCCTCCACCTCGAGA 60.025 50.000 15.71 0.00 30.97 4.04
1287 1364 1.473278 GACGACGAGAAAGATGAGGGT 59.527 52.381 0.00 0.00 0.00 4.34
1305 1382 2.189521 GCGATCCCCATCAACCGT 59.810 61.111 0.00 0.00 0.00 4.83
1307 1384 1.823295 CGATCCCCATCAACCGTCT 59.177 57.895 0.00 0.00 0.00 4.18
1317 1394 1.002134 CAACCGTCTTGCCTGGGAT 60.002 57.895 0.00 0.00 0.00 3.85
1375 1452 6.980051 ACGAAAGTAAGAACAAAACTGTCT 57.020 33.333 0.00 0.00 46.88 3.41
1376 1453 6.772078 ACGAAAGTAAGAACAAAACTGTCTG 58.228 36.000 0.00 0.00 46.88 3.51
1377 1454 6.370718 ACGAAAGTAAGAACAAAACTGTCTGT 59.629 34.615 0.00 0.00 46.88 3.41
1378 1455 6.682863 CGAAAGTAAGAACAAAACTGTCTGTG 59.317 38.462 0.00 0.00 0.00 3.66
1380 1457 3.782889 AAGAACAAAACTGTCTGTGCC 57.217 42.857 0.00 0.00 0.00 5.01
1384 1462 2.210116 ACAAAACTGTCTGTGCCTACG 58.790 47.619 0.00 0.00 0.00 3.51
1433 1511 6.545504 TCAAGCTAGTGTCAAATCAAGTTC 57.454 37.500 0.00 0.00 0.00 3.01
1435 1513 3.997021 AGCTAGTGTCAAATCAAGTTCCG 59.003 43.478 0.00 0.00 0.00 4.30
1457 1535 2.031560 GCACAATCCGACATGCGATTTA 59.968 45.455 10.48 0.00 44.57 1.40
1469 1547 1.736249 GCGATTTACGTAGCGTGCGT 61.736 55.000 13.48 8.15 41.39 5.24
1490 1568 4.552767 CGTGATGCGATTCCTGGTTAATTC 60.553 45.833 0.00 0.00 44.77 2.17
1501 1581 8.650143 ATTCCTGGTTAATTCAGTGTAACAAT 57.350 30.769 0.00 0.00 41.43 2.71
1503 1583 8.786826 TCCTGGTTAATTCAGTGTAACAATAG 57.213 34.615 0.00 1.36 41.43 1.73
1504 1584 7.335924 TCCTGGTTAATTCAGTGTAACAATAGC 59.664 37.037 0.00 0.00 41.43 2.97
1524 1604 8.589629 CAATAGCTAATTGCAAGATGAACAAAC 58.410 33.333 4.94 0.00 45.94 2.93
1525 1605 6.088016 AGCTAATTGCAAGATGAACAAACA 57.912 33.333 4.94 0.00 45.94 2.83
1526 1606 6.514947 AGCTAATTGCAAGATGAACAAACAA 58.485 32.000 4.94 0.00 45.94 2.83
1527 1607 6.985645 AGCTAATTGCAAGATGAACAAACAAA 59.014 30.769 4.94 0.00 45.94 2.83
1529 1609 5.989551 ATTGCAAGATGAACAAACAAACC 57.010 34.783 4.94 0.00 0.00 3.27
1530 1610 4.462508 TGCAAGATGAACAAACAAACCA 57.537 36.364 0.00 0.00 0.00 3.67
1531 1611 5.021033 TGCAAGATGAACAAACAAACCAT 57.979 34.783 0.00 0.00 0.00 3.55
1532 1612 5.049167 TGCAAGATGAACAAACAAACCATC 58.951 37.500 0.00 0.00 35.21 3.51
1533 1613 5.163426 TGCAAGATGAACAAACAAACCATCT 60.163 36.000 0.00 0.00 43.89 2.90
1535 1615 6.074142 GCAAGATGAACAAACAAACCATCTTC 60.074 38.462 11.56 5.52 45.86 2.87
1536 1616 6.089249 AGATGAACAAACAAACCATCTTCC 57.911 37.500 0.00 0.00 40.49 3.46
1537 1617 5.835280 AGATGAACAAACAAACCATCTTCCT 59.165 36.000 0.00 0.00 40.49 3.36
1538 1618 5.261209 TGAACAAACAAACCATCTTCCTG 57.739 39.130 0.00 0.00 0.00 3.86
1540 1620 5.598005 TGAACAAACAAACCATCTTCCTGAT 59.402 36.000 0.00 0.00 35.40 2.90
1620 1832 6.198639 ACAGACCATCTTCCTGATAGTAAGT 58.801 40.000 0.00 0.00 33.36 2.24
1621 1833 7.355101 ACAGACCATCTTCCTGATAGTAAGTA 58.645 38.462 0.00 0.00 33.36 2.24
1622 1834 7.839705 ACAGACCATCTTCCTGATAGTAAGTAA 59.160 37.037 0.00 0.00 33.36 2.24
1627 1839 6.716934 TCTTCCTGATAGTAAGTAAGCTGG 57.283 41.667 0.00 0.00 0.00 4.85
1648 1865 5.448654 TGGCATTGCTATCCAAAGTATCTT 58.551 37.500 8.82 0.00 36.92 2.40
1662 1879 9.784531 TCCAAAGTATCTTTGATCCATCTAATC 57.215 33.333 19.55 0.00 0.00 1.75
1706 1923 1.149174 CCTTGGTCCCATGCGCTAT 59.851 57.895 9.73 0.00 0.00 2.97
1724 1941 4.353777 GCTATACATCTGGACCTATCCCA 58.646 47.826 0.00 0.00 45.59 4.37
1834 2051 2.328099 GCTTCGTTGCCACCAGAGG 61.328 63.158 0.00 0.00 0.00 3.69
1862 2079 5.438972 GCAGATCATAATCGCAACTTTCTC 58.561 41.667 0.00 0.00 36.97 2.87
1874 2091 0.603975 ACTTTCTCTTCAGGCGCACC 60.604 55.000 10.83 0.00 0.00 5.01
1902 2119 6.071051 GGATAACTGCCAAATCCTTACCAAAA 60.071 38.462 0.00 0.00 36.93 2.44
1943 2160 3.767902 TTTTTCCCCATCCTTTTGCTG 57.232 42.857 0.00 0.00 0.00 4.41
1944 2161 0.975887 TTTCCCCATCCTTTTGCTGC 59.024 50.000 0.00 0.00 0.00 5.25
1945 2162 0.114954 TTCCCCATCCTTTTGCTGCT 59.885 50.000 0.00 0.00 0.00 4.24
1946 2163 0.998928 TCCCCATCCTTTTGCTGCTA 59.001 50.000 0.00 0.00 0.00 3.49
1984 2201 6.226052 AGCATCATAATCTGCTGAAATCGTA 58.774 36.000 0.00 0.00 46.55 3.43
1987 2204 7.691463 GCATCATAATCTGCTGAAATCGTATTC 59.309 37.037 0.00 0.00 35.49 1.75
2013 2230 3.512496 TCCCAGTGGACTTGTGTATGTA 58.488 45.455 11.95 0.00 35.03 2.29
2017 2234 5.362717 CCCAGTGGACTTGTGTATGTATCTA 59.637 44.000 11.95 0.00 0.00 1.98
2018 2235 6.461648 CCCAGTGGACTTGTGTATGTATCTAG 60.462 46.154 11.95 0.00 0.00 2.43
2019 2236 5.980116 CAGTGGACTTGTGTATGTATCTAGC 59.020 44.000 0.00 0.00 0.00 3.42
2024 2243 6.398234 ACTTGTGTATGTATCTAGCTCCAG 57.602 41.667 0.00 0.00 0.00 3.86
2027 2246 4.153411 GTGTATGTATCTAGCTCCAGGGT 58.847 47.826 0.00 0.00 0.00 4.34
2040 2259 0.916086 CCAGGGTGTAGTGGGCAATA 59.084 55.000 0.00 0.00 0.00 1.90
2045 2264 2.357777 GGGTGTAGTGGGCAATACCATT 60.358 50.000 0.00 0.00 43.59 3.16
2046 2265 3.361786 GGTGTAGTGGGCAATACCATTT 58.638 45.455 0.00 0.00 43.59 2.32
2047 2266 4.528920 GGTGTAGTGGGCAATACCATTTA 58.471 43.478 0.00 0.00 43.59 1.40
2048 2267 4.951094 GGTGTAGTGGGCAATACCATTTAA 59.049 41.667 0.00 0.00 43.59 1.52
2089 2309 3.447586 TGGAAGGAACAAGGTATCTCGAG 59.552 47.826 5.93 5.93 0.00 4.04
2101 2321 2.121291 ATCTCGAGCAGTCTGTCAGA 57.879 50.000 7.81 0.00 0.00 3.27
2113 2333 7.206687 AGCAGTCTGTCAGATAACTAATTAGC 58.793 38.462 12.54 0.00 0.00 3.09
2123 2343 8.148351 TCAGATAACTAATTAGCGGTTATGCTT 58.852 33.333 12.54 0.00 44.46 3.91
2212 2432 1.929836 CTTCGAAGTACAGCTGATGGC 59.070 52.381 23.35 7.08 42.19 4.40
2810 3036 2.106511 TGCTCTCTGTTTAGCCCAAAGT 59.893 45.455 0.00 0.00 37.97 2.66
3163 3389 6.913170 TGAACGAAAATACTAGACTTACGGT 58.087 36.000 0.00 0.00 0.00 4.83
3164 3390 6.803320 TGAACGAAAATACTAGACTTACGGTG 59.197 38.462 0.00 0.00 0.00 4.94
3165 3391 5.098211 ACGAAAATACTAGACTTACGGTGC 58.902 41.667 0.00 0.00 0.00 5.01
3166 3392 5.097529 CGAAAATACTAGACTTACGGTGCA 58.902 41.667 0.00 0.00 0.00 4.57
3167 3393 5.229469 CGAAAATACTAGACTTACGGTGCAG 59.771 44.000 0.00 0.00 0.00 4.41
3168 3394 4.650754 AATACTAGACTTACGGTGCAGG 57.349 45.455 0.00 0.00 0.00 4.85
3169 3395 0.531200 ACTAGACTTACGGTGCAGGC 59.469 55.000 0.00 0.00 0.00 4.85
3170 3396 0.530744 CTAGACTTACGGTGCAGGCA 59.469 55.000 0.00 0.00 0.00 4.75
3193 3461 6.446318 CATGACTGCTTAAAGCCTTAAACAA 58.554 36.000 0.00 0.00 41.51 2.83
3196 3464 7.496747 TGACTGCTTAAAGCCTTAAACAAAAT 58.503 30.769 0.00 0.00 41.51 1.82
3198 3466 6.929049 ACTGCTTAAAGCCTTAAACAAAATCC 59.071 34.615 0.00 0.00 41.51 3.01
3199 3467 7.061566 TGCTTAAAGCCTTAAACAAAATCCT 57.938 32.000 0.00 0.00 41.51 3.24
3201 3469 7.655732 TGCTTAAAGCCTTAAACAAAATCCTTC 59.344 33.333 0.00 0.00 41.51 3.46
3202 3470 7.655732 GCTTAAAGCCTTAAACAAAATCCTTCA 59.344 33.333 0.00 0.00 34.48 3.02
3203 3471 9.541143 CTTAAAGCCTTAAACAAAATCCTTCAA 57.459 29.630 0.00 0.00 0.00 2.69
3205 3473 5.853936 AGCCTTAAACAAAATCCTTCAACC 58.146 37.500 0.00 0.00 0.00 3.77
3208 3476 6.239317 GCCTTAAACAAAATCCTTCAACCTCT 60.239 38.462 0.00 0.00 0.00 3.69
3210 3478 8.515414 CCTTAAACAAAATCCTTCAACCTCTAG 58.485 37.037 0.00 0.00 0.00 2.43
3211 3479 5.966742 AACAAAATCCTTCAACCTCTAGC 57.033 39.130 0.00 0.00 0.00 3.42
3212 3480 4.336280 ACAAAATCCTTCAACCTCTAGCC 58.664 43.478 0.00 0.00 0.00 3.93
3213 3481 4.043435 ACAAAATCCTTCAACCTCTAGCCT 59.957 41.667 0.00 0.00 0.00 4.58
3215 3483 1.867363 TCCTTCAACCTCTAGCCTCC 58.133 55.000 0.00 0.00 0.00 4.30
3216 3484 1.078823 TCCTTCAACCTCTAGCCTCCA 59.921 52.381 0.00 0.00 0.00 3.86
3217 3485 1.909302 CCTTCAACCTCTAGCCTCCAA 59.091 52.381 0.00 0.00 0.00 3.53
3218 3486 2.093235 CCTTCAACCTCTAGCCTCCAAG 60.093 54.545 0.00 0.00 0.00 3.61
3220 3488 0.460987 CAACCTCTAGCCTCCAAGCG 60.461 60.000 0.00 0.00 38.01 4.68
3221 3489 0.614979 AACCTCTAGCCTCCAAGCGA 60.615 55.000 0.00 0.00 38.01 4.93
3222 3490 1.040339 ACCTCTAGCCTCCAAGCGAG 61.040 60.000 0.00 0.00 36.89 5.03
3223 3491 1.040339 CCTCTAGCCTCCAAGCGAGT 61.040 60.000 0.00 0.00 36.89 4.18
3225 3493 1.606668 CTCTAGCCTCCAAGCGAGTAG 59.393 57.143 0.00 0.00 36.89 2.57
3227 3495 1.606668 CTAGCCTCCAAGCGAGTAGAG 59.393 57.143 0.00 0.00 36.82 2.43
3228 3496 0.033991 AGCCTCCAAGCGAGTAGAGA 60.034 55.000 0.00 0.00 36.82 3.10
3229 3497 1.036707 GCCTCCAAGCGAGTAGAGAT 58.963 55.000 0.00 0.00 36.82 2.75
3246 3724 6.841229 AGTAGAGATGGTTCAATGATGAGGTA 59.159 38.462 0.00 0.00 36.78 3.08
3252 3730 4.041567 TGGTTCAATGATGAGGTACACACT 59.958 41.667 0.00 0.00 36.78 3.55
3254 3732 6.070251 TGGTTCAATGATGAGGTACACACTAT 60.070 38.462 0.00 0.00 36.78 2.12
3287 3765 6.355397 CATCTTAATGATGTCACACCTGAC 57.645 41.667 6.70 0.00 45.55 3.51
3295 3773 3.716006 CACACCTGACAAGCCGCG 61.716 66.667 0.00 0.00 0.00 6.46
3320 3798 1.227002 CTAGCCGGCGACTTTCCTC 60.227 63.158 23.20 0.00 0.00 3.71
3384 3863 1.756690 GCCGGACCCTCTATCCTTACA 60.757 57.143 5.05 0.00 33.70 2.41
3389 3868 4.484912 GGACCCTCTATCCTTACAGTGAT 58.515 47.826 0.00 0.00 33.03 3.06
3439 3918 7.871973 GGTGCCAAACATTAATGCATTGATATA 59.128 33.333 25.07 0.00 34.04 0.86
3440 3919 8.702438 GTGCCAAACATTAATGCATTGATATAC 58.298 33.333 25.07 17.06 34.04 1.47
3441 3920 8.419442 TGCCAAACATTAATGCATTGATATACA 58.581 29.630 25.07 15.95 32.71 2.29
3442 3921 9.426837 GCCAAACATTAATGCATTGATATACAT 57.573 29.630 25.07 2.40 32.71 2.29
3486 3967 5.000012 AGTAGTAGAATCTGCCTTGAACG 58.000 43.478 0.00 0.00 0.00 3.95
3497 3978 9.434559 GAATCTGCCTTGAACGTAATTATAAAC 57.565 33.333 0.00 0.00 0.00 2.01
3499 3980 6.316890 TCTGCCTTGAACGTAATTATAAACCC 59.683 38.462 0.00 0.00 0.00 4.11
3566 4047 2.496899 TGGAAGAGGATTTGTGGCTC 57.503 50.000 0.00 0.00 0.00 4.70
3574 4055 1.002134 ATTTGTGGCTCTCGGGTGG 60.002 57.895 0.00 0.00 0.00 4.61
3656 4168 1.942677 TGTTGTACACCCGTGTTCAG 58.057 50.000 5.69 0.00 41.83 3.02
3662 4174 0.108041 ACACCCGTGTTCAGTTTCGT 60.108 50.000 0.00 0.00 41.83 3.85
3677 4189 0.608035 TTCGTGGGGAAATGAGTGGC 60.608 55.000 0.00 0.00 0.00 5.01
3697 4209 3.502979 GGCCGTGGTAATGTCAGTAAAAA 59.497 43.478 0.00 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 8.238631 GCACATAAAAACGAAGAAAACCCTATA 58.761 33.333 0.00 0.00 0.00 1.31
44 45 7.088272 GCACATAAAAACGAAGAAAACCCTAT 58.912 34.615 0.00 0.00 0.00 2.57
45 46 6.039493 TGCACATAAAAACGAAGAAAACCCTA 59.961 34.615 0.00 0.00 0.00 3.53
46 47 5.163499 TGCACATAAAAACGAAGAAAACCCT 60.163 36.000 0.00 0.00 0.00 4.34
47 48 5.044558 TGCACATAAAAACGAAGAAAACCC 58.955 37.500 0.00 0.00 0.00 4.11
48 49 6.763303 ATGCACATAAAAACGAAGAAAACC 57.237 33.333 0.00 0.00 0.00 3.27
49 50 9.484326 AAAAATGCACATAAAAACGAAGAAAAC 57.516 25.926 0.00 0.00 0.00 2.43
152 160 9.942850 AATGAAGAAGAAGAAAGAAAACCAAAA 57.057 25.926 0.00 0.00 0.00 2.44
199 210 9.763979 CGAAAATTTAGAGTGAAAACAAAATCG 57.236 29.630 0.00 0.00 0.00 3.34
277 288 3.354089 AGCGTTTGGACAATGTTGAAG 57.646 42.857 0.00 0.00 0.00 3.02
291 302 8.962857 ATTTGAAAAATGTTGAAAAAGCGTTT 57.037 23.077 0.00 0.00 0.00 3.60
490 510 9.883142 AAAATGTTGAACAAGGTCTGAAAAATA 57.117 25.926 0.62 0.00 0.00 1.40
729 805 1.318576 CCGCCTGGAGTGTTCTTTTT 58.681 50.000 0.00 0.00 37.49 1.94
730 806 1.172812 GCCGCCTGGAGTGTTCTTTT 61.173 55.000 0.00 0.00 37.49 2.27
731 807 1.600916 GCCGCCTGGAGTGTTCTTT 60.601 57.895 0.00 0.00 37.49 2.52
732 808 2.032681 GCCGCCTGGAGTGTTCTT 59.967 61.111 0.00 0.00 37.49 2.52
733 809 2.925170 AGCCGCCTGGAGTGTTCT 60.925 61.111 0.00 0.00 37.49 3.01
734 810 2.743928 CAGCCGCCTGGAGTGTTC 60.744 66.667 0.00 0.00 37.49 3.18
784 861 1.037579 GGGCATTGTCCTAAGGGCAC 61.038 60.000 0.00 0.00 0.00 5.01
790 867 1.564348 GAAGGAGGGGCATTGTCCTAA 59.436 52.381 7.34 0.00 39.97 2.69
791 868 1.213296 GAAGGAGGGGCATTGTCCTA 58.787 55.000 7.34 0.00 39.97 2.94
792 869 1.915078 CGAAGGAGGGGCATTGTCCT 61.915 60.000 7.34 3.88 42.87 3.85
793 870 1.452108 CGAAGGAGGGGCATTGTCC 60.452 63.158 0.00 0.00 0.00 4.02
794 871 2.115291 GCGAAGGAGGGGCATTGTC 61.115 63.158 0.00 0.00 0.00 3.18
795 872 2.044946 GCGAAGGAGGGGCATTGT 60.045 61.111 0.00 0.00 0.00 2.71
796 873 3.204827 CGCGAAGGAGGGGCATTG 61.205 66.667 0.00 0.00 0.00 2.82
797 874 4.489771 CCGCGAAGGAGGGGCATT 62.490 66.667 8.23 0.00 45.00 3.56
802 879 2.742372 CACAACCGCGAAGGAGGG 60.742 66.667 8.23 0.00 45.00 4.30
803 880 2.027625 GACACAACCGCGAAGGAGG 61.028 63.158 8.23 0.00 45.00 4.30
804 881 2.372690 CGACACAACCGCGAAGGAG 61.373 63.158 8.23 0.00 45.00 3.69
805 882 2.352704 TTCGACACAACCGCGAAGGA 62.353 55.000 8.23 0.00 45.00 3.36
806 883 1.289109 ATTCGACACAACCGCGAAGG 61.289 55.000 8.23 0.00 45.60 3.46
807 884 0.511221 AATTCGACACAACCGCGAAG 59.489 50.000 8.23 0.00 45.60 3.79
808 885 0.938713 AAATTCGACACAACCGCGAA 59.061 45.000 8.23 0.00 46.31 4.70
809 886 0.233590 CAAATTCGACACAACCGCGA 59.766 50.000 8.23 0.00 0.00 5.87
810 887 0.041663 ACAAATTCGACACAACCGCG 60.042 50.000 0.00 0.00 0.00 6.46
811 888 1.778591 CAACAAATTCGACACAACCGC 59.221 47.619 0.00 0.00 0.00 5.68
812 889 3.001838 TCTCAACAAATTCGACACAACCG 59.998 43.478 0.00 0.00 0.00 4.44
813 890 4.545823 TCTCAACAAATTCGACACAACC 57.454 40.909 0.00 0.00 0.00 3.77
814 891 5.328691 TGTTCTCAACAAATTCGACACAAC 58.671 37.500 0.00 0.00 38.72 3.32
815 892 5.553290 TGTTCTCAACAAATTCGACACAA 57.447 34.783 0.00 0.00 38.72 3.33
826 903 4.745478 ACGATAGGCCTTTGTTCTCAACAA 60.745 41.667 12.58 0.00 45.50 2.83
827 904 3.244422 ACGATAGGCCTTTGTTCTCAACA 60.244 43.478 12.58 0.00 43.77 3.33
828 905 3.335579 ACGATAGGCCTTTGTTCTCAAC 58.664 45.455 12.58 0.00 43.77 3.18
829 906 3.596214 GACGATAGGCCTTTGTTCTCAA 58.404 45.455 12.58 0.00 39.30 3.02
830 907 3.247006 GACGATAGGCCTTTGTTCTCA 57.753 47.619 12.58 0.00 39.30 3.27
842 919 3.151710 TGGGCCGTGGACGATAGG 61.152 66.667 0.00 0.00 43.02 2.57
843 920 2.106332 GTGGGCCGTGGACGATAG 59.894 66.667 0.00 0.00 43.02 2.08
844 921 3.463585 GGTGGGCCGTGGACGATA 61.464 66.667 0.00 0.00 43.02 2.92
853 930 3.828694 TTTGTGTACGGGTGGGCCG 62.829 63.158 0.00 0.00 34.97 6.13
854 931 1.969589 CTTTGTGTACGGGTGGGCC 60.970 63.158 0.00 0.00 0.00 5.80
855 932 1.969589 CCTTTGTGTACGGGTGGGC 60.970 63.158 0.00 0.00 0.00 5.36
856 933 0.686224 TACCTTTGTGTACGGGTGGG 59.314 55.000 0.00 0.00 33.74 4.61
857 934 2.773993 ATACCTTTGTGTACGGGTGG 57.226 50.000 0.00 0.00 33.74 4.61
858 935 3.192466 GCTATACCTTTGTGTACGGGTG 58.808 50.000 0.00 0.00 33.74 4.61
859 936 2.169144 GGCTATACCTTTGTGTACGGGT 59.831 50.000 0.00 0.00 34.51 5.28
860 937 2.168936 TGGCTATACCTTTGTGTACGGG 59.831 50.000 0.00 0.00 40.22 5.28
861 938 3.530265 TGGCTATACCTTTGTGTACGG 57.470 47.619 0.00 0.00 40.22 4.02
862 939 3.619929 GGTTGGCTATACCTTTGTGTACG 59.380 47.826 0.00 0.00 40.22 3.67
863 940 3.619929 CGGTTGGCTATACCTTTGTGTAC 59.380 47.826 0.00 0.00 40.22 2.90
864 941 3.864243 CGGTTGGCTATACCTTTGTGTA 58.136 45.455 0.00 0.00 40.22 2.90
865 942 2.706890 CGGTTGGCTATACCTTTGTGT 58.293 47.619 0.00 0.00 40.22 3.72
866 943 1.400494 GCGGTTGGCTATACCTTTGTG 59.600 52.381 0.00 0.00 40.22 3.33
867 944 1.680860 GGCGGTTGGCTATACCTTTGT 60.681 52.381 0.00 0.00 42.94 2.83
868 945 1.021968 GGCGGTTGGCTATACCTTTG 58.978 55.000 0.00 0.00 42.94 2.77
869 946 0.106868 GGGCGGTTGGCTATACCTTT 60.107 55.000 0.00 0.00 42.94 3.11
870 947 1.530283 GGGCGGTTGGCTATACCTT 59.470 57.895 0.00 0.00 42.94 3.50
871 948 2.449450 GGGGCGGTTGGCTATACCT 61.449 63.158 0.00 0.00 42.94 3.08
872 949 2.112507 GGGGCGGTTGGCTATACC 59.887 66.667 0.00 0.00 42.94 2.73
873 950 1.747325 TACGGGGCGGTTGGCTATAC 61.747 60.000 0.00 0.00 42.94 1.47
874 951 1.047596 TTACGGGGCGGTTGGCTATA 61.048 55.000 0.00 0.00 42.94 1.31
875 952 1.912826 TTTACGGGGCGGTTGGCTAT 61.913 55.000 0.00 0.00 42.94 2.97
876 953 2.121992 TTTTACGGGGCGGTTGGCTA 62.122 55.000 0.00 0.00 42.94 3.93
877 954 2.980105 TTTTTACGGGGCGGTTGGCT 62.980 55.000 0.00 0.00 42.94 4.75
878 955 2.562876 TTTTTACGGGGCGGTTGGC 61.563 57.895 0.00 0.00 42.51 4.52
879 956 3.760917 TTTTTACGGGGCGGTTGG 58.239 55.556 0.00 0.00 0.00 3.77
899 976 9.594478 GCTATAGCTTTTCTCTCTTTCTTACTT 57.406 33.333 17.75 0.00 38.21 2.24
900 977 7.918562 CGCTATAGCTTTTCTCTCTTTCTTACT 59.081 37.037 21.98 0.00 39.32 2.24
901 978 7.916450 TCGCTATAGCTTTTCTCTCTTTCTTAC 59.084 37.037 21.98 0.00 39.32 2.34
902 979 7.997482 TCGCTATAGCTTTTCTCTCTTTCTTA 58.003 34.615 21.98 0.00 39.32 2.10
903 980 6.868622 TCGCTATAGCTTTTCTCTCTTTCTT 58.131 36.000 21.98 0.00 39.32 2.52
904 981 6.458232 TCGCTATAGCTTTTCTCTCTTTCT 57.542 37.500 21.98 0.00 39.32 2.52
905 982 6.200097 CCTTCGCTATAGCTTTTCTCTCTTTC 59.800 42.308 21.98 0.00 39.32 2.62
906 983 6.045955 CCTTCGCTATAGCTTTTCTCTCTTT 58.954 40.000 21.98 0.00 39.32 2.52
907 984 5.452636 CCCTTCGCTATAGCTTTTCTCTCTT 60.453 44.000 21.98 0.00 39.32 2.85
908 985 4.038642 CCCTTCGCTATAGCTTTTCTCTCT 59.961 45.833 21.98 0.00 39.32 3.10
909 986 4.038162 TCCCTTCGCTATAGCTTTTCTCTC 59.962 45.833 21.98 0.00 39.32 3.20
910 987 3.961408 TCCCTTCGCTATAGCTTTTCTCT 59.039 43.478 21.98 0.00 39.32 3.10
911 988 4.323553 TCCCTTCGCTATAGCTTTTCTC 57.676 45.455 21.98 0.00 39.32 2.87
912 989 4.755266 TTCCCTTCGCTATAGCTTTTCT 57.245 40.909 21.98 0.00 39.32 2.52
913 990 4.260825 GCTTTCCCTTCGCTATAGCTTTTC 60.261 45.833 21.98 0.00 39.32 2.29
914 991 3.628032 GCTTTCCCTTCGCTATAGCTTTT 59.372 43.478 21.98 0.00 39.32 2.27
915 992 3.206964 GCTTTCCCTTCGCTATAGCTTT 58.793 45.455 21.98 0.00 39.32 3.51
916 993 2.170607 TGCTTTCCCTTCGCTATAGCTT 59.829 45.455 21.98 0.00 39.32 3.74
917 994 1.762957 TGCTTTCCCTTCGCTATAGCT 59.237 47.619 21.98 0.00 39.32 3.32
918 995 2.139118 CTGCTTTCCCTTCGCTATAGC 58.861 52.381 15.09 15.09 37.78 2.97
919 996 2.139118 GCTGCTTTCCCTTCGCTATAG 58.861 52.381 0.00 0.00 0.00 1.31
920 997 1.484653 TGCTGCTTTCCCTTCGCTATA 59.515 47.619 0.00 0.00 0.00 1.31
921 998 0.253044 TGCTGCTTTCCCTTCGCTAT 59.747 50.000 0.00 0.00 0.00 2.97
922 999 0.673644 GTGCTGCTTTCCCTTCGCTA 60.674 55.000 0.00 0.00 0.00 4.26
923 1000 1.968540 GTGCTGCTTTCCCTTCGCT 60.969 57.895 0.00 0.00 0.00 4.93
924 1001 2.563427 GTGCTGCTTTCCCTTCGC 59.437 61.111 0.00 0.00 0.00 4.70
925 1002 2.335712 GGGTGCTGCTTTCCCTTCG 61.336 63.158 16.48 0.00 38.29 3.79
926 1003 2.335712 CGGGTGCTGCTTTCCCTTC 61.336 63.158 19.52 2.13 39.10 3.46
927 1004 2.282462 CGGGTGCTGCTTTCCCTT 60.282 61.111 19.52 0.00 39.10 3.95
928 1005 3.249189 TCGGGTGCTGCTTTCCCT 61.249 61.111 19.52 0.00 39.10 4.20
929 1006 2.747855 CTCGGGTGCTGCTTTCCC 60.748 66.667 14.68 14.68 37.98 3.97
930 1007 2.747855 CCTCGGGTGCTGCTTTCC 60.748 66.667 0.00 0.89 0.00 3.13
931 1008 0.889186 TTTCCTCGGGTGCTGCTTTC 60.889 55.000 0.00 0.00 0.00 2.62
932 1009 1.150536 TTTCCTCGGGTGCTGCTTT 59.849 52.632 0.00 0.00 0.00 3.51
933 1010 1.600916 GTTTCCTCGGGTGCTGCTT 60.601 57.895 0.00 0.00 0.00 3.91
934 1011 2.032681 GTTTCCTCGGGTGCTGCT 59.967 61.111 0.00 0.00 0.00 4.24
935 1012 3.056328 GGTTTCCTCGGGTGCTGC 61.056 66.667 0.00 0.00 0.00 5.25
936 1013 1.550130 TAGGGTTTCCTCGGGTGCTG 61.550 60.000 0.00 0.00 43.66 4.41
937 1014 0.838987 TTAGGGTTTCCTCGGGTGCT 60.839 55.000 0.00 0.00 43.66 4.40
938 1015 0.675837 GTTAGGGTTTCCTCGGGTGC 60.676 60.000 0.00 0.00 43.66 5.01
939 1016 0.035725 GGTTAGGGTTTCCTCGGGTG 60.036 60.000 0.00 0.00 43.66 4.61
940 1017 0.474273 TGGTTAGGGTTTCCTCGGGT 60.474 55.000 0.00 0.00 43.66 5.28
941 1018 0.035725 GTGGTTAGGGTTTCCTCGGG 60.036 60.000 0.00 0.00 43.66 5.14
942 1019 0.035725 GGTGGTTAGGGTTTCCTCGG 60.036 60.000 0.00 0.00 43.66 4.63
943 1020 0.688487 TGGTGGTTAGGGTTTCCTCG 59.312 55.000 0.00 0.00 43.66 4.63
944 1021 2.679930 CGATGGTGGTTAGGGTTTCCTC 60.680 54.545 0.00 0.00 43.66 3.71
945 1022 1.280998 CGATGGTGGTTAGGGTTTCCT 59.719 52.381 0.00 0.00 46.96 3.36
946 1023 1.279846 TCGATGGTGGTTAGGGTTTCC 59.720 52.381 0.00 0.00 0.00 3.13
947 1024 2.773993 TCGATGGTGGTTAGGGTTTC 57.226 50.000 0.00 0.00 0.00 2.78
948 1025 3.009695 TCAATCGATGGTGGTTAGGGTTT 59.990 43.478 0.00 0.00 0.00 3.27
949 1026 2.574369 TCAATCGATGGTGGTTAGGGTT 59.426 45.455 0.00 0.00 0.00 4.11
950 1027 2.193127 TCAATCGATGGTGGTTAGGGT 58.807 47.619 0.00 0.00 0.00 4.34
951 1028 3.492102 ATCAATCGATGGTGGTTAGGG 57.508 47.619 0.00 0.00 0.00 3.53
952 1029 4.450976 TCAATCAATCGATGGTGGTTAGG 58.549 43.478 0.00 0.00 30.13 2.69
953 1030 4.024556 GCTCAATCAATCGATGGTGGTTAG 60.025 45.833 0.00 0.00 30.13 2.34
954 1031 3.876914 GCTCAATCAATCGATGGTGGTTA 59.123 43.478 0.00 0.00 30.13 2.85
955 1032 2.684881 GCTCAATCAATCGATGGTGGTT 59.315 45.455 0.00 0.00 30.13 3.67
956 1033 2.292267 GCTCAATCAATCGATGGTGGT 58.708 47.619 0.00 0.00 30.13 4.16
957 1034 1.262417 CGCTCAATCAATCGATGGTGG 59.738 52.381 0.00 0.00 30.13 4.61
958 1035 1.262417 CCGCTCAATCAATCGATGGTG 59.738 52.381 0.00 0.00 30.13 4.17
959 1036 1.586422 CCGCTCAATCAATCGATGGT 58.414 50.000 0.00 0.00 30.13 3.55
960 1037 0.236711 GCCGCTCAATCAATCGATGG 59.763 55.000 0.00 0.00 30.13 3.51
961 1038 0.110956 CGCCGCTCAATCAATCGATG 60.111 55.000 0.00 0.00 30.13 3.84
962 1039 1.224069 CCGCCGCTCAATCAATCGAT 61.224 55.000 0.00 0.00 0.00 3.59
963 1040 1.882625 CCGCCGCTCAATCAATCGA 60.883 57.895 0.00 0.00 0.00 3.59
964 1041 2.628106 CCGCCGCTCAATCAATCG 59.372 61.111 0.00 0.00 0.00 3.34
965 1042 2.329339 GCCGCCGCTCAATCAATC 59.671 61.111 0.00 0.00 0.00 2.67
966 1043 3.576356 CGCCGCCGCTCAATCAAT 61.576 61.111 0.00 0.00 0.00 2.57
988 1065 4.292178 CTCCATCTCCGCCGCTCC 62.292 72.222 0.00 0.00 0.00 4.70
989 1066 3.219928 TCTCCATCTCCGCCGCTC 61.220 66.667 0.00 0.00 0.00 5.03
990 1067 3.532155 GTCTCCATCTCCGCCGCT 61.532 66.667 0.00 0.00 0.00 5.52
991 1068 4.933064 CGTCTCCATCTCCGCCGC 62.933 72.222 0.00 0.00 0.00 6.53
992 1069 2.556459 ATCGTCTCCATCTCCGCCG 61.556 63.158 0.00 0.00 0.00 6.46
993 1070 1.006805 CATCGTCTCCATCTCCGCC 60.007 63.158 0.00 0.00 0.00 6.13
994 1071 0.039617 CTCATCGTCTCCATCTCCGC 60.040 60.000 0.00 0.00 0.00 5.54
995 1072 0.039617 GCTCATCGTCTCCATCTCCG 60.040 60.000 0.00 0.00 0.00 4.63
996 1073 1.000385 CTGCTCATCGTCTCCATCTCC 60.000 57.143 0.00 0.00 0.00 3.71
997 1074 1.602668 GCTGCTCATCGTCTCCATCTC 60.603 57.143 0.00 0.00 0.00 2.75
998 1075 0.388659 GCTGCTCATCGTCTCCATCT 59.611 55.000 0.00 0.00 0.00 2.90
999 1076 0.938637 CGCTGCTCATCGTCTCCATC 60.939 60.000 0.00 0.00 0.00 3.51
1000 1077 1.067084 CGCTGCTCATCGTCTCCAT 59.933 57.895 0.00 0.00 0.00 3.41
1001 1078 2.491621 CGCTGCTCATCGTCTCCA 59.508 61.111 0.00 0.00 0.00 3.86
1002 1079 2.081425 ATCCGCTGCTCATCGTCTCC 62.081 60.000 0.00 0.00 0.00 3.71
1003 1080 0.249238 AATCCGCTGCTCATCGTCTC 60.249 55.000 0.00 0.00 0.00 3.36
1004 1081 0.249238 GAATCCGCTGCTCATCGTCT 60.249 55.000 0.00 0.00 0.00 4.18
1005 1082 1.543941 CGAATCCGCTGCTCATCGTC 61.544 60.000 0.00 0.00 0.00 4.20
1006 1083 1.589993 CGAATCCGCTGCTCATCGT 60.590 57.895 0.00 0.00 0.00 3.73
1007 1084 3.228624 CGAATCCGCTGCTCATCG 58.771 61.111 0.00 0.00 0.00 3.84
1017 1094 2.435234 TTGAACCCCGCGAATCCG 60.435 61.111 8.23 0.00 39.16 4.18
1018 1095 0.463833 ATCTTGAACCCCGCGAATCC 60.464 55.000 8.23 0.00 0.00 3.01
1019 1096 0.938008 GATCTTGAACCCCGCGAATC 59.062 55.000 8.23 0.00 0.00 2.52
1020 1097 0.541863 AGATCTTGAACCCCGCGAAT 59.458 50.000 8.23 0.00 0.00 3.34
1021 1098 1.134907 GTAGATCTTGAACCCCGCGAA 60.135 52.381 8.23 0.00 0.00 4.70
1022 1099 0.458669 GTAGATCTTGAACCCCGCGA 59.541 55.000 8.23 0.00 0.00 5.87
1023 1100 0.174845 TGTAGATCTTGAACCCCGCG 59.825 55.000 0.00 0.00 0.00 6.46
1024 1101 1.653151 GTGTAGATCTTGAACCCCGC 58.347 55.000 0.00 0.00 0.00 6.13
1025 1102 1.553248 TGGTGTAGATCTTGAACCCCG 59.447 52.381 0.00 0.00 0.00 5.73
1026 1103 3.741388 CGATGGTGTAGATCTTGAACCCC 60.741 52.174 0.00 0.00 0.00 4.95
1027 1104 3.132289 TCGATGGTGTAGATCTTGAACCC 59.868 47.826 0.00 0.00 0.00 4.11
1028 1105 4.113354 GTCGATGGTGTAGATCTTGAACC 58.887 47.826 0.00 7.36 0.00 3.62
1029 1106 3.791887 CGTCGATGGTGTAGATCTTGAAC 59.208 47.826 0.00 0.00 0.00 3.18
1030 1107 3.692593 TCGTCGATGGTGTAGATCTTGAA 59.307 43.478 0.00 0.00 0.00 2.69
1031 1108 3.275999 TCGTCGATGGTGTAGATCTTGA 58.724 45.455 0.00 0.00 0.00 3.02
1032 1109 3.692791 TCGTCGATGGTGTAGATCTTG 57.307 47.619 0.00 0.00 0.00 3.02
1033 1110 3.945921 TCTTCGTCGATGGTGTAGATCTT 59.054 43.478 0.00 0.00 0.00 2.40
1034 1111 3.542648 TCTTCGTCGATGGTGTAGATCT 58.457 45.455 4.48 0.00 0.00 2.75
1035 1112 3.965292 TCTTCGTCGATGGTGTAGATC 57.035 47.619 4.48 0.00 0.00 2.75
1036 1113 4.230314 CATCTTCGTCGATGGTGTAGAT 57.770 45.455 12.08 6.21 37.67 1.98
1037 1114 3.692791 CATCTTCGTCGATGGTGTAGA 57.307 47.619 12.08 4.19 37.67 2.59
1044 1121 1.217585 ATGCGCCATCTTCGTCGATG 61.218 55.000 4.18 0.00 40.32 3.84
1045 1122 0.941463 GATGCGCCATCTTCGTCGAT 60.941 55.000 4.18 0.00 37.82 3.59
1046 1123 1.588932 GATGCGCCATCTTCGTCGA 60.589 57.895 4.18 0.00 37.82 4.20
1047 1124 1.420641 TTGATGCGCCATCTTCGTCG 61.421 55.000 4.18 0.00 41.06 5.12
1048 1125 0.302890 CTTGATGCGCCATCTTCGTC 59.697 55.000 4.18 0.00 41.06 4.20
1049 1126 0.108186 TCTTGATGCGCCATCTTCGT 60.108 50.000 4.18 0.00 41.06 3.85
1050 1127 0.302890 GTCTTGATGCGCCATCTTCG 59.697 55.000 4.18 1.86 41.06 3.79
1051 1128 0.659957 GGTCTTGATGCGCCATCTTC 59.340 55.000 4.18 0.00 41.06 2.87
1052 1129 1.091771 CGGTCTTGATGCGCCATCTT 61.092 55.000 4.18 0.00 41.06 2.40
1053 1130 1.522355 CGGTCTTGATGCGCCATCT 60.522 57.895 4.18 0.00 41.06 2.90
1054 1131 2.537560 CCGGTCTTGATGCGCCATC 61.538 63.158 4.18 8.92 40.88 3.51
1055 1132 2.514592 CCGGTCTTGATGCGCCAT 60.515 61.111 4.18 0.00 0.00 4.40
1089 1166 4.668118 TTCCCGGTCGTCGCAACC 62.668 66.667 0.00 0.00 37.59 3.77
1090 1167 3.110178 CTTCCCGGTCGTCGCAAC 61.110 66.667 0.00 0.00 37.59 4.17
1091 1168 4.367023 CCTTCCCGGTCGTCGCAA 62.367 66.667 0.00 0.00 37.59 4.85
1093 1170 4.493747 CTCCTTCCCGGTCGTCGC 62.494 72.222 0.00 0.00 37.59 5.19
1094 1171 3.823330 CCTCCTTCCCGGTCGTCG 61.823 72.222 0.00 0.00 38.88 5.12
1095 1172 2.679287 ACCTCCTTCCCGGTCGTC 60.679 66.667 0.00 0.00 0.00 4.20
1096 1173 2.679287 GACCTCCTTCCCGGTCGT 60.679 66.667 0.00 0.00 40.18 4.34
1099 1176 3.003763 GCTGACCTCCTTCCCGGT 61.004 66.667 0.00 0.00 35.90 5.28
1100 1177 3.003173 TGCTGACCTCCTTCCCGG 61.003 66.667 0.00 0.00 0.00 5.73
1101 1178 2.581354 CTGCTGACCTCCTTCCCG 59.419 66.667 0.00 0.00 0.00 5.14
1102 1179 2.270527 GCTGCTGACCTCCTTCCC 59.729 66.667 0.00 0.00 0.00 3.97
1103 1180 1.078567 CTGCTGCTGACCTCCTTCC 60.079 63.158 0.00 0.00 0.00 3.46
1104 1181 1.744741 GCTGCTGCTGACCTCCTTC 60.745 63.158 10.92 0.00 36.03 3.46
1105 1182 2.350514 GCTGCTGCTGACCTCCTT 59.649 61.111 10.92 0.00 36.03 3.36
1106 1183 2.926779 TGCTGCTGCTGACCTCCT 60.927 61.111 17.00 0.00 40.48 3.69
1107 1184 2.436292 CTGCTGCTGCTGACCTCC 60.436 66.667 17.00 0.00 40.01 4.30
1108 1185 3.126225 GCTGCTGCTGCTGACCTC 61.126 66.667 23.39 4.67 40.01 3.85
1109 1186 3.486905 TTGCTGCTGCTGCTGACCT 62.487 57.895 27.67 0.00 40.01 3.85
1110 1187 2.979197 CTTGCTGCTGCTGCTGACC 61.979 63.158 27.67 9.30 40.01 4.02
1111 1188 2.561885 CTTGCTGCTGCTGCTGAC 59.438 61.111 27.67 15.34 40.01 3.51
1112 1189 2.671963 CCTTGCTGCTGCTGCTGA 60.672 61.111 27.67 17.12 40.01 4.26
1113 1190 2.979197 GACCTTGCTGCTGCTGCTG 61.979 63.158 27.67 20.35 40.48 4.41
1114 1191 2.672307 GACCTTGCTGCTGCTGCT 60.672 61.111 27.67 11.28 40.48 4.24
1115 1192 4.099170 CGACCTTGCTGCTGCTGC 62.099 66.667 22.51 22.51 40.48 5.25
1116 1193 3.429141 CCGACCTTGCTGCTGCTG 61.429 66.667 17.00 9.29 40.48 4.41
1117 1194 4.711949 CCCGACCTTGCTGCTGCT 62.712 66.667 17.00 0.00 40.48 4.24
1122 1199 3.058160 CTTGCCCCGACCTTGCTG 61.058 66.667 0.00 0.00 0.00 4.41
1125 1202 3.365265 GTGCTTGCCCCGACCTTG 61.365 66.667 0.00 0.00 0.00 3.61
1126 1203 4.660938 GGTGCTTGCCCCGACCTT 62.661 66.667 0.00 0.00 0.00 3.50
1148 1225 3.471806 GAAGACCTCGGCCCTCCC 61.472 72.222 0.00 0.00 0.00 4.30
1149 1226 3.839432 CGAAGACCTCGGCCCTCC 61.839 72.222 0.00 0.00 44.20 4.30
1166 1243 2.022129 CCTATCCGGTTCGCATCGC 61.022 63.158 0.00 0.00 0.00 4.58
1167 1244 2.022129 GCCTATCCGGTTCGCATCG 61.022 63.158 0.00 0.00 34.25 3.84
1168 1245 2.022129 CGCCTATCCGGTTCGCATC 61.022 63.158 0.00 0.00 34.25 3.91
1169 1246 2.029073 CGCCTATCCGGTTCGCAT 59.971 61.111 0.00 0.00 34.25 4.73
1170 1247 4.215742 CCGCCTATCCGGTTCGCA 62.216 66.667 0.00 0.00 43.24 5.10
1177 1254 2.661866 CCTTTCGCCGCCTATCCG 60.662 66.667 0.00 0.00 0.00 4.18
1178 1255 2.280865 CCCTTTCGCCGCCTATCC 60.281 66.667 0.00 0.00 0.00 2.59
1179 1256 2.973052 GCCCTTTCGCCGCCTATC 60.973 66.667 0.00 0.00 0.00 2.08
1180 1257 3.338275 TTGCCCTTTCGCCGCCTAT 62.338 57.895 0.00 0.00 0.00 2.57
1181 1258 3.969250 CTTGCCCTTTCGCCGCCTA 62.969 63.158 0.00 0.00 0.00 3.93
1188 1265 4.715523 TCCCGCCTTGCCCTTTCG 62.716 66.667 0.00 0.00 0.00 3.46
1189 1266 2.751837 CTCCCGCCTTGCCCTTTC 60.752 66.667 0.00 0.00 0.00 2.62
1216 1293 3.181530 ACTGAATTGAACGAATCGCGAAG 60.182 43.478 15.24 10.67 44.57 3.79
1238 1315 1.561542 GAGGATTCTTCTTCCCAGGCA 59.438 52.381 0.00 0.00 33.45 4.75
1241 1318 2.092699 GGTGGAGGATTCTTCTTCCCAG 60.093 54.545 2.16 0.00 45.35 4.45
1242 1319 1.916181 GGTGGAGGATTCTTCTTCCCA 59.084 52.381 2.16 0.00 45.35 4.37
1243 1320 2.171659 GAGGTGGAGGATTCTTCTTCCC 59.828 54.545 2.16 0.00 45.35 3.97
1245 1322 2.761208 TCGAGGTGGAGGATTCTTCTTC 59.239 50.000 0.00 0.00 0.00 2.87
1246 1323 2.763448 CTCGAGGTGGAGGATTCTTCTT 59.237 50.000 3.91 0.00 0.00 2.52
1247 1324 2.024846 TCTCGAGGTGGAGGATTCTTCT 60.025 50.000 13.56 0.00 34.74 2.85
1248 1325 2.100087 GTCTCGAGGTGGAGGATTCTTC 59.900 54.545 13.56 0.00 34.74 2.87
1249 1326 2.104170 GTCTCGAGGTGGAGGATTCTT 58.896 52.381 13.56 0.00 34.74 2.52
1250 1327 1.770294 GTCTCGAGGTGGAGGATTCT 58.230 55.000 13.56 0.00 34.74 2.40
1251 1328 0.382515 CGTCTCGAGGTGGAGGATTC 59.617 60.000 13.56 0.00 34.74 2.52
1252 1329 0.034380 TCGTCTCGAGGTGGAGGATT 60.034 55.000 13.56 0.00 34.74 3.01
1253 1330 0.748729 GTCGTCTCGAGGTGGAGGAT 60.749 60.000 13.56 0.00 36.23 3.24
1254 1331 1.376942 GTCGTCTCGAGGTGGAGGA 60.377 63.158 13.56 1.46 36.23 3.71
1255 1332 2.751913 CGTCGTCTCGAGGTGGAGG 61.752 68.421 13.56 9.23 36.23 4.30
1256 1333 1.740664 TCGTCGTCTCGAGGTGGAG 60.741 63.158 13.56 2.26 41.54 3.86
1257 1334 2.344872 TCGTCGTCTCGAGGTGGA 59.655 61.111 13.56 4.75 41.54 4.02
1268 1345 1.202582 CACCCTCATCTTTCTCGTCGT 59.797 52.381 0.00 0.00 0.00 4.34
1276 1353 0.181350 GGGATCGCACCCTCATCTTT 59.819 55.000 4.64 0.00 45.90 2.52
1287 1364 2.189257 CGGTTGATGGGGATCGCA 59.811 61.111 12.32 0.00 0.00 5.10
1297 1374 1.002134 CCCAGGCAAGACGGTTGAT 60.002 57.895 4.10 0.00 0.00 2.57
1300 1377 0.252197 GTATCCCAGGCAAGACGGTT 59.748 55.000 0.00 0.00 0.00 4.44
1305 1382 2.930935 GGAGGTATCCCAGGCAAGA 58.069 57.895 0.00 0.00 40.03 3.02
1378 1455 1.134965 AGTGAGTTGAGATGCGTAGGC 60.135 52.381 0.00 0.00 40.52 3.93
1380 1457 6.269315 AGATAAAGTGAGTTGAGATGCGTAG 58.731 40.000 0.00 0.00 0.00 3.51
1384 1462 6.372659 TGGAAAGATAAAGTGAGTTGAGATGC 59.627 38.462 0.00 0.00 0.00 3.91
1392 1470 6.479884 AGCTTGATGGAAAGATAAAGTGAGT 58.520 36.000 0.00 0.00 0.00 3.41
1435 1513 1.439353 ATCGCATGTCGGATTGTGCC 61.439 55.000 9.16 0.00 39.05 5.01
1447 1525 1.653679 GCACGCTACGTAAATCGCATG 60.654 52.381 10.26 4.33 44.19 4.06
1457 1535 3.179265 GCATCACGCACGCTACGT 61.179 61.111 0.00 0.00 46.42 3.57
1469 1547 4.522114 TGAATTAACCAGGAATCGCATCA 58.478 39.130 0.00 0.00 0.00 3.07
1476 1554 8.650143 ATTGTTACACTGAATTAACCAGGAAT 57.350 30.769 10.38 0.00 36.03 3.01
1479 1557 7.336931 AGCTATTGTTACACTGAATTAACCAGG 59.663 37.037 10.38 0.00 36.03 4.45
1480 1558 8.268850 AGCTATTGTTACACTGAATTAACCAG 57.731 34.615 5.44 5.44 37.64 4.00
1481 1559 9.727859 TTAGCTATTGTTACACTGAATTAACCA 57.272 29.630 0.00 0.00 0.00 3.67
1490 1568 7.751732 TCTTGCAATTAGCTATTGTTACACTG 58.248 34.615 0.00 0.00 44.52 3.66
1501 1581 7.213216 TGTTTGTTCATCTTGCAATTAGCTA 57.787 32.000 0.00 0.00 45.94 3.32
1503 1583 6.768029 TTGTTTGTTCATCTTGCAATTAGC 57.232 33.333 0.00 0.00 45.96 3.09
1504 1584 7.224362 TGGTTTGTTTGTTCATCTTGCAATTAG 59.776 33.333 0.00 0.00 0.00 1.73
1515 1595 5.598005 TCAGGAAGATGGTTTGTTTGTTCAT 59.402 36.000 0.00 0.00 0.00 2.57
1516 1596 4.952957 TCAGGAAGATGGTTTGTTTGTTCA 59.047 37.500 0.00 0.00 0.00 3.18
1517 1597 5.514274 TCAGGAAGATGGTTTGTTTGTTC 57.486 39.130 0.00 0.00 0.00 3.18
1518 1598 6.484364 AATCAGGAAGATGGTTTGTTTGTT 57.516 33.333 0.00 0.00 36.96 2.83
1520 1600 9.793252 CTTATAATCAGGAAGATGGTTTGTTTG 57.207 33.333 0.00 0.00 36.96 2.93
1521 1601 9.753674 TCTTATAATCAGGAAGATGGTTTGTTT 57.246 29.630 0.00 0.00 36.96 2.83
1580 1792 9.911788 AGATGGTCTGTTTGTTCATCTTATAAT 57.088 29.630 0.00 0.00 40.89 1.28
1581 1793 9.739276 AAGATGGTCTGTTTGTTCATCTTATAA 57.261 29.630 13.16 0.00 46.75 0.98
1586 1798 5.006386 GGAAGATGGTCTGTTTGTTCATCT 58.994 41.667 0.00 0.00 44.20 2.90
1587 1799 5.006386 AGGAAGATGGTCTGTTTGTTCATC 58.994 41.667 0.00 0.00 35.69 2.92
1588 1800 4.763793 CAGGAAGATGGTCTGTTTGTTCAT 59.236 41.667 0.00 0.00 0.00 2.57
1589 1801 4.136796 CAGGAAGATGGTCTGTTTGTTCA 58.863 43.478 0.00 0.00 0.00 3.18
1590 1802 4.389374 TCAGGAAGATGGTCTGTTTGTTC 58.611 43.478 0.00 0.00 0.00 3.18
1591 1803 4.437682 TCAGGAAGATGGTCTGTTTGTT 57.562 40.909 0.00 0.00 0.00 2.83
1592 1804 4.647564 ATCAGGAAGATGGTCTGTTTGT 57.352 40.909 0.00 0.00 35.06 2.83
1593 1805 5.738909 ACTATCAGGAAGATGGTCTGTTTG 58.261 41.667 0.00 0.00 44.13 2.93
1599 1811 7.014808 AGCTTACTTACTATCAGGAAGATGGTC 59.985 40.741 5.15 0.00 44.13 4.02
1620 1832 3.295585 TTGGATAGCAATGCCAGCTTA 57.704 42.857 0.00 0.00 43.25 3.09
1621 1833 2.148446 TTGGATAGCAATGCCAGCTT 57.852 45.000 0.00 0.00 43.25 3.74
1622 1834 2.029623 CTTTGGATAGCAATGCCAGCT 58.970 47.619 0.00 0.00 45.77 4.24
1627 1839 7.031226 TCAAAGATACTTTGGATAGCAATGC 57.969 36.000 19.43 0.00 0.00 3.56
1648 1865 7.663081 GCCAGATTAAGTGATTAGATGGATCAA 59.337 37.037 0.00 0.00 35.46 2.57
1662 1879 3.427233 GCTGCAAGAAGCCAGATTAAGTG 60.427 47.826 0.00 0.00 44.83 3.16
1742 1959 2.008329 GAGAAGATCTGCAAGGTGCTG 58.992 52.381 2.79 1.24 45.31 4.41
1785 2002 3.311110 TGGCCACCAGAGACCGTC 61.311 66.667 0.00 0.00 0.00 4.79
1786 2003 3.626924 GTGGCCACCAGAGACCGT 61.627 66.667 26.31 0.00 32.34 4.83
1787 2004 2.788191 GAAGTGGCCACCAGAGACCG 62.788 65.000 32.29 0.00 32.34 4.79
1834 2051 1.639298 GCGATTATGATCTGCCCCGC 61.639 60.000 0.00 0.00 34.71 6.13
1835 2052 0.320683 TGCGATTATGATCTGCCCCG 60.321 55.000 10.24 0.00 33.69 5.73
1837 2054 2.498167 AGTTGCGATTATGATCTGCCC 58.502 47.619 10.24 3.83 33.69 5.36
1862 2079 1.971505 TATCCCTGGTGCGCCTGAAG 61.972 60.000 23.41 14.33 35.96 3.02
1874 2091 3.303351 AGGATTTGGCAGTTATCCCTG 57.697 47.619 16.87 0.00 38.89 4.45
1929 2146 0.743097 GCTAGCAGCAAAAGGATGGG 59.257 55.000 10.63 0.00 41.89 4.00
1930 2147 1.760192 AGCTAGCAGCAAAAGGATGG 58.240 50.000 18.83 0.00 45.56 3.51
1935 2152 8.370493 TGAATATTACTAGCTAGCAGCAAAAG 57.630 34.615 20.91 6.59 45.56 2.27
1936 2153 7.041780 GCTGAATATTACTAGCTAGCAGCAAAA 60.042 37.037 27.95 13.57 45.56 2.44
1938 2155 5.928839 GCTGAATATTACTAGCTAGCAGCAA 59.071 40.000 27.95 16.50 45.56 3.91
1939 2156 5.473931 GCTGAATATTACTAGCTAGCAGCA 58.526 41.667 27.95 15.04 45.56 4.41
1940 2157 5.473931 TGCTGAATATTACTAGCTAGCAGC 58.526 41.667 26.99 26.99 44.58 5.25
1941 2158 7.318893 TGATGCTGAATATTACTAGCTAGCAG 58.681 38.462 20.91 17.07 42.35 4.24
1943 2160 9.809096 TTATGATGCTGAATATTACTAGCTAGC 57.191 33.333 20.91 6.62 37.10 3.42
1971 2188 2.158755 AGGGGGAATACGATTTCAGCAG 60.159 50.000 0.00 0.00 0.00 4.24
1973 2190 2.495084 GAGGGGGAATACGATTTCAGC 58.505 52.381 0.00 0.00 0.00 4.26
1984 2201 1.619669 GTCCACTGGGAGGGGGAAT 60.620 63.158 0.00 0.00 46.12 3.01
1987 2204 2.204151 AAGTCCACTGGGAGGGGG 60.204 66.667 0.00 0.00 46.12 5.40
2013 2230 2.672098 CACTACACCCTGGAGCTAGAT 58.328 52.381 0.00 0.00 29.04 1.98
2017 2234 1.613630 CCCACTACACCCTGGAGCT 60.614 63.158 0.00 0.00 29.04 4.09
2018 2235 2.990479 CCCACTACACCCTGGAGC 59.010 66.667 0.00 0.00 29.04 4.70
2019 2236 1.488705 TTGCCCACTACACCCTGGAG 61.489 60.000 0.00 0.00 33.50 3.86
2024 2243 0.621609 TGGTATTGCCCACTACACCC 59.378 55.000 0.00 0.00 36.04 4.61
2027 2246 7.617723 AGAAATTAAATGGTATTGCCCACTACA 59.382 33.333 0.00 0.00 37.31 2.74
2047 2266 9.657419 CCTTCCAAATAACAAAGCATAGAAATT 57.343 29.630 0.00 0.00 0.00 1.82
2048 2267 9.034800 TCCTTCCAAATAACAAAGCATAGAAAT 57.965 29.630 0.00 0.00 0.00 2.17
2089 2309 6.143118 CGCTAATTAGTTATCTGACAGACTGC 59.857 42.308 7.47 0.68 0.00 4.40
2101 2321 6.485313 TGCAAGCATAACCGCTAATTAGTTAT 59.515 34.615 13.91 8.21 42.89 1.89
2113 2333 1.552226 CTGCAATGCAAGCATAACCG 58.448 50.000 16.26 2.64 41.82 4.44
2123 2343 1.927487 AAACTGGATCCTGCAATGCA 58.073 45.000 17.94 7.99 36.92 3.96
2172 2392 0.465460 GTGACCAGACCAGCCAACAA 60.465 55.000 0.00 0.00 0.00 2.83
2212 2432 4.766969 GCAAGTTCAGTTTTGCTCTTTG 57.233 40.909 2.22 0.00 44.70 2.77
2238 2458 1.000938 GACTTTGGAAGCCAGCACTTG 60.001 52.381 0.00 0.00 33.81 3.16
2282 2502 6.183360 TGCGTATACAAATACTGTCTTCTCGA 60.183 38.462 3.32 0.00 39.64 4.04
2297 2517 3.493699 GCTTGTAGGGGATGCGTATACAA 60.494 47.826 3.32 0.00 35.62 2.41
2302 2522 1.128200 ATGCTTGTAGGGGATGCGTA 58.872 50.000 0.00 0.00 0.00 4.42
2810 3036 1.444119 GCGAGCACCACTTTGGACAA 61.444 55.000 0.00 0.00 40.96 3.18
3169 3395 6.012658 TGTTTAAGGCTTTAAGCAGTCATG 57.987 37.500 19.10 0.00 44.75 3.07
3170 3396 6.648879 TTGTTTAAGGCTTTAAGCAGTCAT 57.351 33.333 19.10 2.31 44.75 3.06
3193 3461 3.201045 GGAGGCTAGAGGTTGAAGGATTT 59.799 47.826 0.00 0.00 0.00 2.17
3196 3464 1.078823 TGGAGGCTAGAGGTTGAAGGA 59.921 52.381 0.00 0.00 0.00 3.36
3198 3466 2.679349 GCTTGGAGGCTAGAGGTTGAAG 60.679 54.545 0.00 0.00 0.00 3.02
3199 3467 1.279271 GCTTGGAGGCTAGAGGTTGAA 59.721 52.381 0.00 0.00 0.00 2.69
3201 3469 0.460987 CGCTTGGAGGCTAGAGGTTG 60.461 60.000 0.00 0.00 0.00 3.77
3202 3470 0.614979 TCGCTTGGAGGCTAGAGGTT 60.615 55.000 0.00 0.00 0.00 3.50
3203 3471 1.000486 TCGCTTGGAGGCTAGAGGT 60.000 57.895 0.00 0.00 0.00 3.85
3213 3481 2.145397 ACCATCTCTACTCGCTTGGA 57.855 50.000 0.00 0.00 0.00 3.53
3215 3483 3.510388 TGAACCATCTCTACTCGCTTG 57.490 47.619 0.00 0.00 0.00 4.01
3216 3484 4.160439 TCATTGAACCATCTCTACTCGCTT 59.840 41.667 0.00 0.00 0.00 4.68
3217 3485 3.701542 TCATTGAACCATCTCTACTCGCT 59.298 43.478 0.00 0.00 0.00 4.93
3218 3486 4.046938 TCATTGAACCATCTCTACTCGC 57.953 45.455 0.00 0.00 0.00 5.03
3220 3488 6.183360 ACCTCATCATTGAACCATCTCTACTC 60.183 42.308 0.00 0.00 0.00 2.59
3221 3489 5.664908 ACCTCATCATTGAACCATCTCTACT 59.335 40.000 0.00 0.00 0.00 2.57
3222 3490 5.923204 ACCTCATCATTGAACCATCTCTAC 58.077 41.667 0.00 0.00 0.00 2.59
3223 3491 6.611236 TGTACCTCATCATTGAACCATCTCTA 59.389 38.462 0.00 0.00 0.00 2.43
3225 3493 5.525378 GTGTACCTCATCATTGAACCATCTC 59.475 44.000 0.00 0.00 0.00 2.75
3227 3495 5.065218 GTGTGTACCTCATCATTGAACCATC 59.935 44.000 0.00 0.00 0.00 3.51
3228 3496 4.943705 GTGTGTACCTCATCATTGAACCAT 59.056 41.667 0.00 0.00 0.00 3.55
3229 3497 4.041567 AGTGTGTACCTCATCATTGAACCA 59.958 41.667 0.00 0.00 0.00 3.67
3246 3724 5.946942 AGATGATGGTCAAGATAGTGTGT 57.053 39.130 0.00 0.00 0.00 3.72
3310 3788 1.784525 AGTTTCAGCGAGGAAAGTCG 58.215 50.000 2.63 0.00 43.08 4.18
3320 3798 1.795768 TGGTTGCTCTAGTTTCAGCG 58.204 50.000 0.00 0.00 38.59 5.18
3384 3863 3.370104 CTCTGGTCCTAGGTTCATCACT 58.630 50.000 9.08 0.00 0.00 3.41
3389 3868 1.267121 GTGCTCTGGTCCTAGGTTCA 58.733 55.000 9.08 7.59 0.00 3.18
3453 3932 9.819267 GGCAGATTCTACTACTTTAGTGTAATT 57.181 33.333 0.00 0.00 39.81 1.40
3454 3933 9.203163 AGGCAGATTCTACTACTTTAGTGTAAT 57.797 33.333 0.00 0.00 39.81 1.89
3455 3934 8.591114 AGGCAGATTCTACTACTTTAGTGTAA 57.409 34.615 0.00 0.00 39.81 2.41
3456 3935 8.467598 CAAGGCAGATTCTACTACTTTAGTGTA 58.532 37.037 0.00 0.00 39.81 2.90
3457 3936 7.178628 TCAAGGCAGATTCTACTACTTTAGTGT 59.821 37.037 0.00 0.00 39.81 3.55
3458 3937 7.548097 TCAAGGCAGATTCTACTACTTTAGTG 58.452 38.462 0.00 0.00 39.81 2.74
3472 3951 8.403236 GGTTTATAATTACGTTCAAGGCAGATT 58.597 33.333 0.00 0.00 0.00 2.40
3475 3954 6.094325 TGGGTTTATAATTACGTTCAAGGCAG 59.906 38.462 0.00 0.00 0.00 4.85
3476 3955 5.944599 TGGGTTTATAATTACGTTCAAGGCA 59.055 36.000 0.00 0.00 0.00 4.75
3497 3978 4.636206 GCTACTTCTGGACTATTTGTTGGG 59.364 45.833 0.00 0.00 0.00 4.12
3499 3980 6.992063 ATGCTACTTCTGGACTATTTGTTG 57.008 37.500 0.00 0.00 0.00 3.33
3544 4025 4.414846 AGAGCCACAAATCCTCTTCCATAT 59.585 41.667 0.00 0.00 32.27 1.78
3548 4029 2.637947 GAGAGCCACAAATCCTCTTCC 58.362 52.381 0.00 0.00 36.16 3.46
3574 4055 0.393077 ATATAGGGCGAGGTGTGTGC 59.607 55.000 0.00 0.00 0.00 4.57
3581 4062 5.791336 TGCTATATTCATATAGGGCGAGG 57.209 43.478 13.46 0.00 41.48 4.63
3582 4063 7.436933 TCAATGCTATATTCATATAGGGCGAG 58.563 38.462 13.46 0.00 41.48 5.03
3583 4064 7.360113 TCAATGCTATATTCATATAGGGCGA 57.640 36.000 13.46 0.00 41.48 5.54
3584 4065 8.437360 TTTCAATGCTATATTCATATAGGGCG 57.563 34.615 13.46 0.00 41.48 6.13
3627 4114 6.655848 ACACGGGTGTACAACAAACAATATAT 59.344 34.615 14.02 0.00 42.90 0.86
3631 4118 3.018149 ACACGGGTGTACAACAAACAAT 58.982 40.909 14.02 0.00 42.90 2.71
3633 4120 2.110901 ACACGGGTGTACAACAAACA 57.889 45.000 14.02 0.00 42.90 2.83
3635 4122 2.678836 CTGAACACGGGTGTACAACAAA 59.321 45.455 14.02 0.00 44.13 2.83
3645 4157 0.812412 CCACGAAACTGAACACGGGT 60.812 55.000 0.00 0.00 0.00 5.28
3656 4168 1.539827 CCACTCATTTCCCCACGAAAC 59.460 52.381 0.00 0.00 43.21 2.78
3662 4174 2.354729 CGGCCACTCATTTCCCCA 59.645 61.111 2.24 0.00 0.00 4.96
3677 4189 5.467399 TGTCTTTTTACTGACATTACCACGG 59.533 40.000 0.00 0.00 38.15 4.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.