Multiple sequence alignment - TraesCS2D01G558500

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G558500 chr2D 100.000 7702 0 0 1 7702 631487698 631479997 0.000000e+00 14224.0
1 TraesCS2D01G558500 chr2D 97.404 2234 51 5 5170 7401 631803171 631805399 0.000000e+00 3797.0
2 TraesCS2D01G558500 chr2D 96.640 1994 59 5 1878 3863 631800158 631802151 0.000000e+00 3304.0
3 TraesCS2D01G558500 chr2D 87.625 2594 192 65 1316 3863 631246114 631243604 0.000000e+00 2892.0
4 TraesCS2D01G558500 chr2D 88.267 1500 114 30 5529 6988 631241743 631240266 0.000000e+00 1738.0
5 TraesCS2D01G558500 chr2D 86.671 1553 163 24 4779 6304 593801759 593803294 0.000000e+00 1681.0
6 TraesCS2D01G558500 chr2D 91.860 688 10 6 4368 5009 631802415 631803102 0.000000e+00 918.0
7 TraesCS2D01G558500 chr2D 83.979 774 63 23 4131 4855 631243494 631242733 0.000000e+00 686.0
8 TraesCS2D01G558500 chr2D 88.081 495 31 13 857 1337 631247646 631247166 5.220000e-156 562.0
9 TraesCS2D01G558500 chr2D 94.969 318 8 3 7385 7702 631805413 631805722 6.940000e-135 492.0
10 TraesCS2D01G558500 chr2D 97.544 285 7 0 4044 4328 631802133 631802417 8.980000e-134 488.0
11 TraesCS2D01G558500 chr2D 92.620 271 15 4 7206 7475 631240066 631239800 1.210000e-102 385.0
12 TraesCS2D01G558500 chr2D 85.714 364 34 10 4420 4768 593801232 593801592 1.220000e-97 368.0
13 TraesCS2D01G558500 chr2D 92.174 230 14 4 4850 5077 631242657 631242430 9.640000e-84 322.0
14 TraesCS2D01G558500 chr2D 93.467 199 13 0 6321 6519 593803381 593803579 5.840000e-76 296.0
15 TraesCS2D01G558500 chr2D 84.615 247 28 6 1686 1925 631246806 631246563 3.590000e-58 237.0
16 TraesCS2D01G558500 chr2D 91.279 172 15 0 7531 7702 631239710 631239539 1.290000e-57 235.0
17 TraesCS2D01G558500 chr2D 90.000 130 10 2 6582 6708 593803712 593803841 1.720000e-36 165.0
18 TraesCS2D01G558500 chr2D 92.857 98 6 1 383 480 382456029 382455933 2.900000e-29 141.0
19 TraesCS2D01G558500 chr2D 88.462 104 11 1 5434 5537 631242445 631242343 2.920000e-24 124.0
20 TraesCS2D01G558500 chr2D 100.000 67 0 0 5072 5138 631803103 631803169 2.920000e-24 124.0
21 TraesCS2D01G558500 chr2D 97.436 39 1 0 1343 1381 631247139 631247101 4.990000e-07 67.6
22 TraesCS2D01G558500 chr2B 96.031 3704 93 13 4044 7702 774947998 774944304 0.000000e+00 5976.0
23 TraesCS2D01G558500 chr2B 94.816 2006 71 15 1878 3863 774949972 774947980 0.000000e+00 3097.0
24 TraesCS2D01G558500 chr2B 88.693 2379 168 49 1522 3863 774722234 774719920 0.000000e+00 2809.0
25 TraesCS2D01G558500 chr2B 87.119 2492 187 65 1431 3863 744381577 744383993 0.000000e+00 2700.0
26 TraesCS2D01G558500 chr2B 87.525 1499 125 32 5529 6988 744386297 744387772 0.000000e+00 1676.0
27 TraesCS2D01G558500 chr2B 84.490 1412 149 29 4716 6083 720805143 720806528 0.000000e+00 1330.0
28 TraesCS2D01G558500 chr2B 87.948 1004 86 15 5529 6497 774718427 774717424 0.000000e+00 1151.0
29 TraesCS2D01G558500 chr2B 83.758 1139 127 30 1980 3097 720801621 720802722 0.000000e+00 1026.0
30 TraesCS2D01G558500 chr2B 87.206 766 52 14 4131 4855 774719847 774719087 0.000000e+00 830.0
31 TraesCS2D01G558500 chr2B 87.203 758 38 15 6533 7276 774717278 774716566 0.000000e+00 808.0
32 TraesCS2D01G558500 chr2B 84.579 642 56 20 4131 4740 744384103 744384733 1.430000e-166 597.0
33 TraesCS2D01G558500 chr2B 84.330 485 33 19 868 1333 744380862 744381322 1.190000e-117 435.0
34 TraesCS2D01G558500 chr2B 85.586 444 29 11 7261 7702 774716549 774716139 4.270000e-117 433.0
35 TraesCS2D01G558500 chr2B 92.143 280 17 4 7206 7484 744387969 744388244 2.610000e-104 390.0
36 TraesCS2D01G558500 chr2B 83.447 441 50 18 922 1340 774723156 774722717 9.370000e-104 388.0
37 TraesCS2D01G558500 chr2B 91.739 230 15 4 4850 5077 774719011 774718784 4.490000e-82 316.0
38 TraesCS2D01G558500 chr2B 91.304 230 16 4 4850 5077 744385146 744385373 2.090000e-80 311.0
39 TraesCS2D01G558500 chr2B 97.268 183 2 3 3863 4043 138125643 138125462 2.700000e-79 307.0
40 TraesCS2D01G558500 chr2B 80.556 360 46 12 3232 3591 720803387 720803722 9.920000e-64 255.0
41 TraesCS2D01G558500 chr2B 88.889 189 16 4 7493 7677 744388222 744388409 2.160000e-55 228.0
42 TraesCS2D01G558500 chr2B 93.701 127 8 0 6582 6708 720807254 720807380 2.840000e-44 191.0
43 TraesCS2D01G558500 chr2B 89.109 101 10 1 5434 5533 744385358 744385458 2.920000e-24 124.0
44 TraesCS2D01G558500 chr2B 84.071 113 14 2 3197 3306 774376235 774376124 1.060000e-18 106.0
45 TraesCS2D01G558500 chr2B 80.769 130 20 4 1683 1811 774722361 774722236 6.360000e-16 97.1
46 TraesCS2D01G558500 chr2A 94.670 2908 89 21 4044 6900 760115480 760118372 0.000000e+00 4451.0
47 TraesCS2D01G558500 chr2A 97.544 1751 34 6 2118 3863 760113752 760115498 0.000000e+00 2987.0
48 TraesCS2D01G558500 chr2A 93.031 1277 31 19 857 2122 760112369 760113598 0.000000e+00 1812.0
49 TraesCS2D01G558500 chr2A 94.140 1075 52 4 1878 2946 759873482 759872413 0.000000e+00 1626.0
50 TraesCS2D01G558500 chr2A 97.581 372 3 2 2942 3307 759869951 759869580 3.920000e-177 632.0
51 TraesCS2D01G558500 chr2A 92.386 197 8 7 3852 4044 722747269 722747076 2.740000e-69 274.0
52 TraesCS2D01G558500 chr2A 87.773 229 17 10 3839 4062 360431412 360431634 2.760000e-64 257.0
53 TraesCS2D01G558500 chr4D 85.341 880 102 15 5631 6496 73386376 73387242 0.000000e+00 885.0
54 TraesCS2D01G558500 chr4D 79.924 1051 102 37 4082 5086 73384847 73385834 0.000000e+00 671.0
55 TraesCS2D01G558500 chr4D 91.129 248 19 2 564 809 490256001 490256247 4.450000e-87 333.0
56 TraesCS2D01G558500 chr4D 93.299 194 8 5 3851 4042 254241191 254241381 1.640000e-71 281.0
57 TraesCS2D01G558500 chr4D 77.778 360 56 9 3232 3591 73384303 73384638 4.710000e-47 200.0
58 TraesCS2D01G558500 chr4D 89.051 137 14 1 1 137 490244842 490244977 1.330000e-37 169.0
59 TraesCS2D01G558500 chr4D 93.478 92 5 1 276 367 490255894 490255984 1.350000e-27 135.0
60 TraesCS2D01G558500 chr4D 90.722 97 6 2 387 483 494787281 494787188 8.110000e-25 126.0
61 TraesCS2D01G558500 chr4D 89.583 48 2 1 5580 5624 73386299 73386346 3.000000e-04 58.4
62 TraesCS2D01G558500 chr1D 85.068 884 104 16 5631 6497 20972435 20973307 0.000000e+00 876.0
63 TraesCS2D01G558500 chr1D 79.734 1051 103 38 4082 5086 20970902 20971888 0.000000e+00 660.0
64 TraesCS2D01G558500 chr1D 84.492 374 42 6 2747 3105 20969899 20970271 9.510000e-94 355.0
65 TraesCS2D01G558500 chr1D 77.778 360 56 9 3232 3591 20970358 20970693 4.710000e-47 200.0
66 TraesCS2D01G558500 chr1B 83.072 1022 106 27 5520 6497 34324141 34325139 0.000000e+00 867.0
67 TraesCS2D01G558500 chr1B 80.511 1057 108 36 4082 5086 34322686 34323696 0.000000e+00 721.0
68 TraesCS2D01G558500 chr1B 86.971 591 64 10 2102 2687 34321082 34321664 0.000000e+00 652.0
69 TraesCS2D01G558500 chr1B 95.789 190 4 4 3863 4050 33923064 33923251 3.490000e-78 303.0
70 TraesCS2D01G558500 chr1B 96.257 187 4 3 3862 4046 397427465 397427280 3.490000e-78 303.0
71 TraesCS2D01G558500 chr1B 93.564 202 9 4 3853 4051 230141377 230141577 1.620000e-76 298.0
72 TraesCS2D01G558500 chr1B 94.624 93 5 0 383 475 151463394 151463486 2.240000e-30 145.0
73 TraesCS2D01G558500 chr3B 93.606 391 17 5 469 851 807219500 807219110 1.860000e-160 577.0
74 TraesCS2D01G558500 chr3B 93.496 246 7 3 149 390 807219736 807219496 2.640000e-94 357.0
75 TraesCS2D01G558500 chr3B 94.161 137 7 1 1 137 807220009 807219874 2.820000e-49 207.0
76 TraesCS2D01G558500 chr3A 96.183 262 8 2 597 856 118506158 118506419 1.990000e-115 427.0
77 TraesCS2D01G558500 chr3A 94.118 238 12 1 155 390 118505534 118505771 2.040000e-95 361.0
78 TraesCS2D01G558500 chr3A 96.791 187 3 3 3862 4046 107736019 107736204 7.510000e-80 309.0
79 TraesCS2D01G558500 chr3A 94.161 137 8 0 1 137 118505255 118505391 7.830000e-50 209.0
80 TraesCS2D01G558500 chr3A 94.215 121 6 1 469 588 118505767 118505887 4.750000e-42 183.0
81 TraesCS2D01G558500 chr5B 86.508 378 45 4 483 859 6589925 6589553 2.000000e-110 411.0
82 TraesCS2D01G558500 chr5B 96.757 185 3 3 3863 4045 433527348 433527165 9.710000e-79 305.0
83 TraesCS2D01G558500 chr5B 92.788 208 8 7 3863 4067 233689253 233689050 2.100000e-75 294.0
84 TraesCS2D01G558500 chr5B 90.099 202 13 6 3863 4059 144587378 144587179 9.920000e-64 255.0
85 TraesCS2D01G558500 chr5B 89.447 199 17 2 182 378 6590128 6589932 1.660000e-61 248.0
86 TraesCS2D01G558500 chr5B 90.230 174 13 4 688 859 134907415 134907244 2.800000e-54 224.0
87 TraesCS2D01G558500 chr5B 87.786 131 16 0 7 137 6590430 6590300 3.720000e-33 154.0
88 TraesCS2D01G558500 chr5B 93.684 95 6 0 381 475 711742702 711742608 8.060000e-30 143.0
89 TraesCS2D01G558500 chr5B 90.625 96 8 1 387 482 411034863 411034769 8.110000e-25 126.0
90 TraesCS2D01G558500 chr7B 86.066 366 42 7 494 856 101655237 101655596 1.210000e-102 385.0
91 TraesCS2D01G558500 chr7B 92.308 221 15 2 165 384 486755212 486754993 5.800000e-81 313.0
92 TraesCS2D01G558500 chr7B 93.532 201 7 6 3846 4042 578177893 578178091 2.100000e-75 294.0
93 TraesCS2D01G558500 chr7B 92.647 204 9 6 3847 4045 41524863 41525065 9.780000e-74 289.0
94 TraesCS2D01G558500 chr7B 89.474 209 14 7 3849 4053 588063729 588063933 2.760000e-64 257.0
95 TraesCS2D01G558500 chr7B 92.771 166 11 1 165 329 614482319 614482484 9.990000e-59 239.0
96 TraesCS2D01G558500 chr7B 92.771 166 11 1 165 329 614540244 614540409 9.990000e-59 239.0
97 TraesCS2D01G558500 chr7B 85.430 151 15 5 165 310 101655024 101655172 4.810000e-32 150.0
98 TraesCS2D01G558500 chr7B 89.381 113 12 0 1 113 614480339 614480451 8.060000e-30 143.0
99 TraesCS2D01G558500 chr7B 89.381 113 12 0 1 113 614538050 614538162 8.060000e-30 143.0
100 TraesCS2D01G558500 chr7B 95.455 88 4 0 386 473 692831548 692831635 2.900000e-29 141.0
101 TraesCS2D01G558500 chr7B 92.941 85 6 0 388 472 84214188 84214272 2.920000e-24 124.0
102 TraesCS2D01G558500 chr6A 88.043 276 26 5 552 825 24778782 24779052 3.470000e-83 320.0
103 TraesCS2D01G558500 chr6A 90.000 130 11 1 1 128 24778137 24778266 4.780000e-37 167.0
104 TraesCS2D01G558500 chr6A 87.586 145 10 3 240 384 24778524 24778660 2.220000e-35 161.0
105 TraesCS2D01G558500 chr5A 95.789 190 5 3 3863 4050 596662343 596662155 3.490000e-78 303.0
106 TraesCS2D01G558500 chr5A 89.394 132 13 1 1 132 54736057 54735927 1.720000e-36 165.0
107 TraesCS2D01G558500 chr5A 86.000 150 8 8 240 384 54735771 54735630 1.730000e-31 148.0
108 TraesCS2D01G558500 chr5A 91.667 84 6 1 483 565 54735612 54735529 1.760000e-21 115.0
109 TraesCS2D01G558500 chr6B 93.333 195 8 5 3852 4043 164392193 164392385 4.550000e-72 283.0
110 TraesCS2D01G558500 chr6B 90.625 96 7 2 387 481 498526666 498526572 8.110000e-25 126.0
111 TraesCS2D01G558500 chr3D 90.476 210 11 8 3836 4043 153512426 153512224 1.270000e-67 268.0
112 TraesCS2D01G558500 chr3D 88.785 107 9 3 385 490 19768264 19768368 2.260000e-25 128.0
113 TraesCS2D01G558500 chr7D 87.209 172 20 2 686 856 167556195 167556365 2.190000e-45 195.0
114 TraesCS2D01G558500 chr7D 85.876 177 23 2 683 858 149743787 149743962 3.670000e-43 187.0
115 TraesCS2D01G558500 chr7D 90.909 99 9 0 386 484 4011450 4011352 4.850000e-27 134.0
116 TraesCS2D01G558500 chr7D 88.119 101 11 1 381 481 94261220 94261319 1.360000e-22 119.0
117 TraesCS2D01G558500 chr6D 94.505 91 5 0 387 477 199210327 199210417 2.900000e-29 141.0
118 TraesCS2D01G558500 chr1A 93.548 93 6 0 383 475 95850272 95850364 1.040000e-28 139.0
119 TraesCS2D01G558500 chr1A 92.708 96 7 0 385 480 513731261 513731356 1.040000e-28 139.0
120 TraesCS2D01G558500 chr4B 93.548 93 5 1 388 480 192792831 192792740 3.750000e-28 137.0
121 TraesCS2D01G558500 chr4B 90.625 64 6 0 1683 1746 564822566 564822629 1.380000e-12 86.1
122 TraesCS2D01G558500 chr4B 94.872 39 2 0 1343 1381 564822271 564822309 2.320000e-05 62.1
123 TraesCS2D01G558500 chr5D 90.099 101 8 2 387 487 543601737 543601639 6.270000e-26 130.0
124 TraesCS2D01G558500 chr4A 93.023 86 6 0 388 473 710779422 710779507 8.110000e-25 126.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G558500 chr2D 631479997 631487698 7701 True 14224.000000 14224 100.000000 1 7702 1 chr2D.!!$R2 7701
1 TraesCS2D01G558500 chr2D 631800158 631805722 5564 False 1520.500000 3797 96.402833 1878 7702 6 chr2D.!!$F2 5824
2 TraesCS2D01G558500 chr2D 631239539 631247646 8107 True 724.860000 2892 89.453800 857 7702 10 chr2D.!!$R3 6845
3 TraesCS2D01G558500 chr2D 593801232 593803841 2609 False 627.500000 1681 88.963000 4420 6708 4 chr2D.!!$F1 2288
4 TraesCS2D01G558500 chr2B 774944304 774949972 5668 True 4536.500000 5976 95.423500 1878 7702 2 chr2B.!!$R4 5824
5 TraesCS2D01G558500 chr2B 774716139 774723156 7017 True 854.012500 2809 86.573875 922 7702 8 chr2B.!!$R3 6780
6 TraesCS2D01G558500 chr2B 744380862 744388409 7547 False 807.625000 2700 88.124750 868 7677 8 chr2B.!!$F2 6809
7 TraesCS2D01G558500 chr2B 720801621 720807380 5759 False 700.500000 1330 85.626250 1980 6708 4 chr2B.!!$F1 4728
8 TraesCS2D01G558500 chr2A 760112369 760118372 6003 False 3083.333333 4451 95.081667 857 6900 3 chr2A.!!$F2 6043
9 TraesCS2D01G558500 chr2A 759869580 759873482 3902 True 1129.000000 1626 95.860500 1878 3307 2 chr2A.!!$R2 1429
10 TraesCS2D01G558500 chr4D 73384303 73387242 2939 False 453.600000 885 83.156500 3232 6496 4 chr4D.!!$F3 3264
11 TraesCS2D01G558500 chr1D 20969899 20973307 3408 False 522.750000 876 81.768000 2747 6497 4 chr1D.!!$F1 3750
12 TraesCS2D01G558500 chr1B 34321082 34325139 4057 False 746.666667 867 83.518000 2102 6497 3 chr1B.!!$F4 4395
13 TraesCS2D01G558500 chr3B 807219110 807220009 899 True 380.333333 577 93.754333 1 851 3 chr3B.!!$R1 850
14 TraesCS2D01G558500 chr3A 118505255 118506419 1164 False 295.000000 427 94.669250 1 856 4 chr3A.!!$F2 855
15 TraesCS2D01G558500 chr5B 6589553 6590430 877 True 271.000000 411 87.913667 7 859 3 chr5B.!!$R7 852
16 TraesCS2D01G558500 chr7B 101655024 101655596 572 False 267.500000 385 85.748000 165 856 2 chr7B.!!$F6 691
17 TraesCS2D01G558500 chr6A 24778137 24779052 915 False 216.000000 320 88.543000 1 825 3 chr6A.!!$F1 824

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
319 578 1.024579 ATTAACTCCAACAGGCCGCG 61.025 55.000 0.00 0.00 0.00 6.46 F
1086 1698 0.996762 TCCTCCTCCTCCTCCTCCTC 60.997 65.000 0.00 0.00 0.00 3.71 F
1609 3639 0.038310 CTCAACTGGGGAGGGTTTCC 59.962 60.000 0.00 0.00 46.00 3.13 F
1639 3669 0.536006 GGAGCAGTATGATGGTGGGC 60.536 60.000 0.00 0.00 39.69 5.36 F
1977 4035 2.095461 GAGTGGAAATGGGAAGCCTTC 58.905 52.381 0.00 0.00 0.00 3.46 F
3458 8787 0.250901 AGGGTGGTGCTGATGTCAAC 60.251 55.000 0.00 0.00 0.00 3.18 F
4024 9397 0.111253 AAGGCAGCAGCTTTACCACT 59.889 50.000 0.00 0.00 38.40 4.00 F
4025 9398 0.607489 AGGCAGCAGCTTTACCACTG 60.607 55.000 0.00 0.00 41.70 3.66 F
4032 9405 1.210155 GCTTTACCACTGCGCCAAG 59.790 57.895 4.18 0.00 0.00 3.61 F
4033 9406 1.875963 CTTTACCACTGCGCCAAGG 59.124 57.895 4.18 6.21 0.00 3.61 F
6331 14353 0.314935 AGCTTGCCATTGTGTTTCCG 59.685 50.000 0.00 0.00 0.00 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1139 1785 0.744057 CTGACCTGCACACACACACA 60.744 55.000 0.00 0.00 0.00 3.72 R
2325 4558 1.617018 CCTCAAGATGCCCTCCGACA 61.617 60.000 0.00 0.00 0.00 4.35 R
2623 4861 1.672356 ATGGTGGAGAACTGTGCGC 60.672 57.895 0.00 0.00 0.00 6.09 R
3338 8637 5.164233 AGAACATAGCGATGAACGGATATG 58.836 41.667 14.19 0.00 42.83 1.78 R
3855 9228 0.033109 GGGGCTGCCCTTTAGATGTT 60.033 55.000 34.99 0.00 44.66 2.71 R
5392 11933 1.277842 TCTTAAAGGCTGCGGATGACA 59.722 47.619 0.00 0.00 0.00 3.58 R
5961 13737 6.892310 AGAAAACTGTTCAGCAAACAAATC 57.108 33.333 6.21 3.35 46.95 2.17 R
6061 13839 1.940613 GCAGGTTAATTAGTCCCGCAG 59.059 52.381 10.26 0.89 0.00 5.18 R
6331 14353 6.740110 AGCAACTATATAGACTGCACAGTAC 58.260 40.000 27.82 9.98 42.66 2.73 R
6530 14673 1.749634 ACTGCCGGTCACTAGTATGTC 59.250 52.381 1.90 0.00 0.00 3.06 R
7491 15866 5.975693 ACTAGAAATTTCATTTTCCCGCA 57.024 34.783 19.99 0.00 36.47 5.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 7.350382 ACCCCAAATGTAAAATTTGTTCCTTT 58.650 30.769 9.30 0.00 37.32 3.11
319 578 1.024579 ATTAACTCCAACAGGCCGCG 61.025 55.000 0.00 0.00 0.00 6.46
362 621 4.227512 TCTGCGTACGTCAAAGAGTTAA 57.772 40.909 17.90 0.00 0.00 2.01
391 650 4.295857 GCTAGGAGTGTAGCTTGTACTC 57.704 50.000 13.33 13.33 41.99 2.59
397 656 3.093057 AGTGTAGCTTGTACTCCCTCTG 58.907 50.000 0.00 0.00 0.00 3.35
398 657 2.826725 GTGTAGCTTGTACTCCCTCTGT 59.173 50.000 0.00 0.00 0.00 3.41
399 658 4.015084 GTGTAGCTTGTACTCCCTCTGTA 58.985 47.826 0.00 0.00 0.00 2.74
400 659 4.461781 GTGTAGCTTGTACTCCCTCTGTAA 59.538 45.833 0.00 0.00 0.00 2.41
401 660 5.047519 GTGTAGCTTGTACTCCCTCTGTAAA 60.048 44.000 0.00 0.00 0.00 2.01
402 661 5.720041 TGTAGCTTGTACTCCCTCTGTAAAT 59.280 40.000 0.00 0.00 0.00 1.40
403 662 6.893554 TGTAGCTTGTACTCCCTCTGTAAATA 59.106 38.462 0.00 0.00 0.00 1.40
404 663 6.869206 AGCTTGTACTCCCTCTGTAAATAA 57.131 37.500 0.00 0.00 0.00 1.40
405 664 7.253905 AGCTTGTACTCCCTCTGTAAATAAA 57.746 36.000 0.00 0.00 0.00 1.40
406 665 7.862675 AGCTTGTACTCCCTCTGTAAATAAAT 58.137 34.615 0.00 0.00 0.00 1.40
407 666 8.989131 AGCTTGTACTCCCTCTGTAAATAAATA 58.011 33.333 0.00 0.00 0.00 1.40
408 667 9.780186 GCTTGTACTCCCTCTGTAAATAAATAT 57.220 33.333 0.00 0.00 0.00 1.28
446 705 9.733219 GATTACTACTTTAGTGATCTAAACGCT 57.267 33.333 9.68 0.00 44.10 5.07
447 706 9.733219 ATTACTACTTTAGTGATCTAAACGCTC 57.267 33.333 0.00 0.00 40.05 5.03
448 707 7.393841 ACTACTTTAGTGATCTAAACGCTCT 57.606 36.000 0.00 0.00 40.05 4.09
449 708 7.828712 ACTACTTTAGTGATCTAAACGCTCTT 58.171 34.615 0.00 0.00 40.05 2.85
450 709 8.954350 ACTACTTTAGTGATCTAAACGCTCTTA 58.046 33.333 0.00 0.00 40.05 2.10
451 710 9.953697 CTACTTTAGTGATCTAAACGCTCTTAT 57.046 33.333 0.00 0.00 40.05 1.73
463 722 9.241317 TCTAAACGCTCTTATATTTCTTTACGG 57.759 33.333 0.00 0.00 0.00 4.02
464 723 9.241317 CTAAACGCTCTTATATTTCTTTACGGA 57.759 33.333 0.00 0.00 0.00 4.69
465 724 7.695869 AACGCTCTTATATTTCTTTACGGAG 57.304 36.000 0.00 0.00 0.00 4.63
466 725 6.214399 ACGCTCTTATATTTCTTTACGGAGG 58.786 40.000 0.00 0.00 0.00 4.30
467 726 5.634020 CGCTCTTATATTTCTTTACGGAGGG 59.366 44.000 0.00 0.00 0.00 4.30
531 797 2.286359 CGCACGTTAATACATGCAGCAT 60.286 45.455 0.52 0.52 43.33 3.79
852 1426 4.402474 AGAAAGGGCCAAATAAGGAATTCG 59.598 41.667 6.18 0.00 0.00 3.34
907 1491 8.934825 CACCAGTTCATTCAAAAGAAAAGAAAA 58.065 29.630 0.00 0.00 0.00 2.29
970 1554 4.044439 CCTCCCTGCTGCTGCCTT 62.044 66.667 13.47 0.00 38.71 4.35
1079 1691 2.695597 CCAGCTCCTCCTCCTCCT 59.304 66.667 0.00 0.00 0.00 3.69
1080 1692 1.457455 CCAGCTCCTCCTCCTCCTC 60.457 68.421 0.00 0.00 0.00 3.71
1083 1695 1.152546 GCTCCTCCTCCTCCTCCTC 60.153 68.421 0.00 0.00 0.00 3.71
1084 1696 1.541672 CTCCTCCTCCTCCTCCTCC 59.458 68.421 0.00 0.00 0.00 4.30
1085 1697 0.998945 CTCCTCCTCCTCCTCCTCCT 60.999 65.000 0.00 0.00 0.00 3.69
1086 1698 0.996762 TCCTCCTCCTCCTCCTCCTC 60.997 65.000 0.00 0.00 0.00 3.71
1139 1785 5.862845 TCTCTCTCTCTGATTTTGCTTTGT 58.137 37.500 0.00 0.00 0.00 2.83
1140 1786 5.699915 TCTCTCTCTCTGATTTTGCTTTGTG 59.300 40.000 0.00 0.00 0.00 3.33
1592 3622 9.852091 AATTATGAAAACAGAAATTGCTCTCTC 57.148 29.630 0.00 0.00 0.00 3.20
1595 3625 6.498304 TGAAAACAGAAATTGCTCTCTCAAC 58.502 36.000 0.00 0.00 0.00 3.18
1609 3639 0.038310 CTCAACTGGGGAGGGTTTCC 59.962 60.000 0.00 0.00 46.00 3.13
1639 3669 0.536006 GGAGCAGTATGATGGTGGGC 60.536 60.000 0.00 0.00 39.69 5.36
1674 3706 7.597288 TTATGCTGTATGTATGTAGACTGGT 57.403 36.000 0.00 0.00 0.00 4.00
1675 3707 8.700439 TTATGCTGTATGTATGTAGACTGGTA 57.300 34.615 0.00 0.00 0.00 3.25
1676 3708 6.387041 TGCTGTATGTATGTAGACTGGTAC 57.613 41.667 0.00 0.00 0.00 3.34
1677 3709 6.127101 TGCTGTATGTATGTAGACTGGTACT 58.873 40.000 0.00 0.00 0.00 2.73
1678 3710 6.262496 TGCTGTATGTATGTAGACTGGTACTC 59.738 42.308 0.00 0.00 0.00 2.59
1679 3711 6.294065 GCTGTATGTATGTAGACTGGTACTCC 60.294 46.154 0.00 0.00 0.00 3.85
1765 3797 6.387465 TCTGGCGTATACAGCAGTAATTATC 58.613 40.000 17.33 2.67 35.94 1.75
1821 3853 3.068165 GTCTTTTGGACTGTTCAAAGGGG 59.932 47.826 19.75 12.13 41.46 4.79
1977 4035 2.095461 GAGTGGAAATGGGAAGCCTTC 58.905 52.381 0.00 0.00 0.00 3.46
2050 4110 9.316730 CCAAAATCACAAATATACCTCATTTGG 57.683 33.333 11.30 0.00 44.20 3.28
2262 4495 6.433404 TGAAAGGTACTGTAAAGAGTCTCGAT 59.567 38.462 0.00 0.00 40.86 3.59
2623 4861 6.173339 TCTAACAAAGTCAGATGCTAAAGGG 58.827 40.000 0.00 0.00 0.00 3.95
3338 8637 4.079253 TCAAGGCCAGTATTCTGTTTTCC 58.921 43.478 5.01 0.00 39.82 3.13
3458 8787 0.250901 AGGGTGGTGCTGATGTCAAC 60.251 55.000 0.00 0.00 0.00 3.18
3723 9094 1.215647 GGTAGGTGTGTGAGCTCCG 59.784 63.158 12.15 0.00 33.31 4.63
3731 9102 3.128349 GTGTGTGAGCTCCGAGTTTAAA 58.872 45.455 12.15 0.00 0.00 1.52
3833 9206 6.593382 CACAACCCAAATTCTTTGAGTTTCAA 59.407 34.615 1.28 0.00 39.19 2.69
3868 9241 7.939588 AGATAGATTTACCAACATCTAAAGGGC 59.060 37.037 0.00 0.00 35.96 5.19
3869 9242 5.826643 AGATTTACCAACATCTAAAGGGCA 58.173 37.500 0.00 0.00 0.00 5.36
3870 9243 5.888161 AGATTTACCAACATCTAAAGGGCAG 59.112 40.000 0.00 0.00 0.00 4.85
3871 9244 1.839424 ACCAACATCTAAAGGGCAGC 58.161 50.000 0.00 0.00 0.00 5.25
3872 9245 1.106285 CCAACATCTAAAGGGCAGCC 58.894 55.000 1.26 1.26 0.00 4.85
3873 9246 1.106285 CAACATCTAAAGGGCAGCCC 58.894 55.000 24.90 24.90 45.90 5.19
3884 9257 2.045045 GCAGCCCCAGTGCATGTA 60.045 61.111 0.00 0.00 40.86 2.29
3885 9258 2.117156 GCAGCCCCAGTGCATGTAG 61.117 63.158 0.00 0.00 40.86 2.74
3886 9259 2.117156 CAGCCCCAGTGCATGTAGC 61.117 63.158 0.00 0.00 45.96 3.58
3887 9260 2.273449 GCCCCAGTGCATGTAGCT 59.727 61.111 0.00 0.00 45.94 3.32
3888 9261 1.821332 GCCCCAGTGCATGTAGCTC 60.821 63.158 0.00 0.00 45.94 4.09
3889 9262 1.153086 CCCCAGTGCATGTAGCTCC 60.153 63.158 0.00 0.00 45.94 4.70
3890 9263 1.153086 CCCAGTGCATGTAGCTCCC 60.153 63.158 0.00 0.00 45.94 4.30
3891 9264 1.603842 CCAGTGCATGTAGCTCCCA 59.396 57.895 0.00 0.00 45.94 4.37
3892 9265 0.745845 CCAGTGCATGTAGCTCCCAC 60.746 60.000 0.00 0.00 45.94 4.61
3893 9266 0.251354 CAGTGCATGTAGCTCCCACT 59.749 55.000 0.00 0.00 45.94 4.00
3894 9267 0.987294 AGTGCATGTAGCTCCCACTT 59.013 50.000 0.00 0.00 45.94 3.16
3895 9268 1.089920 GTGCATGTAGCTCCCACTTG 58.910 55.000 0.00 0.00 45.94 3.16
3896 9269 0.677731 TGCATGTAGCTCCCACTTGC 60.678 55.000 15.52 15.52 45.94 4.01
3897 9270 1.709147 GCATGTAGCTCCCACTTGCG 61.709 60.000 9.44 0.00 41.15 4.85
3898 9271 1.450312 ATGTAGCTCCCACTTGCGC 60.450 57.895 0.00 0.00 0.00 6.09
3899 9272 2.047274 GTAGCTCCCACTTGCGCA 60.047 61.111 5.66 5.66 0.00 6.09
3900 9273 2.103042 GTAGCTCCCACTTGCGCAG 61.103 63.158 11.31 7.81 0.00 5.18
3901 9274 3.315142 TAGCTCCCACTTGCGCAGG 62.315 63.158 19.01 19.01 0.00 4.85
3903 9276 4.335647 CTCCCACTTGCGCAGGGT 62.336 66.667 27.15 19.65 43.31 4.34
3904 9277 4.329545 TCCCACTTGCGCAGGGTC 62.330 66.667 27.15 0.00 43.31 4.46
3905 9278 4.335647 CCCACTTGCGCAGGGTCT 62.336 66.667 24.27 0.00 37.81 3.85
3906 9279 3.052082 CCACTTGCGCAGGGTCTG 61.052 66.667 24.27 12.69 34.12 3.51
3907 9280 3.052082 CACTTGCGCAGGGTCTGG 61.052 66.667 24.27 5.85 31.21 3.86
3908 9281 4.335647 ACTTGCGCAGGGTCTGGG 62.336 66.667 24.27 7.48 45.35 4.45
3915 9288 2.689034 CAGGGTCTGGGGAGGGTC 60.689 72.222 0.00 0.00 0.00 4.46
3916 9289 4.026357 AGGGTCTGGGGAGGGTCC 62.026 72.222 0.00 0.00 35.23 4.46
3918 9291 4.393778 GGTCTGGGGAGGGTCCGA 62.394 72.222 0.00 0.00 37.43 4.55
3919 9292 3.075641 GTCTGGGGAGGGTCCGAC 61.076 72.222 0.00 0.00 37.43 4.79
3920 9293 4.393778 TCTGGGGAGGGTCCGACC 62.394 72.222 9.30 9.30 37.43 4.79
3921 9294 4.715130 CTGGGGAGGGTCCGACCA 62.715 72.222 19.43 0.00 41.02 4.02
3923 9296 4.716977 GGGGAGGGTCCGACCACT 62.717 72.222 19.43 13.21 41.02 4.00
3924 9297 2.606826 GGGAGGGTCCGACCACTT 60.607 66.667 19.43 4.13 41.02 3.16
3925 9298 2.222013 GGGAGGGTCCGACCACTTT 61.222 63.158 19.43 1.59 41.02 2.66
3926 9299 1.003718 GGAGGGTCCGACCACTTTG 60.004 63.158 19.43 0.00 41.02 2.77
3927 9300 1.003718 GAGGGTCCGACCACTTTGG 60.004 63.158 19.43 0.00 41.02 3.28
3928 9301 2.033602 GGGTCCGACCACTTTGGG 59.966 66.667 19.43 0.00 43.37 4.12
3929 9302 2.826003 GGGTCCGACCACTTTGGGT 61.826 63.158 19.43 0.00 43.37 4.51
3939 9312 3.934068 ACCACTTTGGGTCTATTGTACG 58.066 45.455 0.00 0.00 43.37 3.67
3940 9313 2.676342 CCACTTTGGGTCTATTGTACGC 59.324 50.000 0.00 0.00 32.67 4.42
3941 9314 3.331150 CACTTTGGGTCTATTGTACGCA 58.669 45.455 0.00 0.00 37.94 5.24
3942 9315 3.370978 CACTTTGGGTCTATTGTACGCAG 59.629 47.826 0.00 0.00 40.36 5.18
3944 9317 2.953466 TGGGTCTATTGTACGCAGTC 57.047 50.000 0.00 0.00 43.93 3.51
3945 9318 2.453521 TGGGTCTATTGTACGCAGTCT 58.546 47.619 0.00 0.00 43.93 3.24
3946 9319 2.829720 TGGGTCTATTGTACGCAGTCTT 59.170 45.455 0.00 0.00 43.93 3.01
3947 9320 3.259876 TGGGTCTATTGTACGCAGTCTTT 59.740 43.478 0.00 0.00 43.93 2.52
3948 9321 3.864003 GGGTCTATTGTACGCAGTCTTTC 59.136 47.826 0.00 0.00 43.93 2.62
3949 9322 3.864003 GGTCTATTGTACGCAGTCTTTCC 59.136 47.826 0.00 0.00 43.93 3.13
3950 9323 3.864003 GTCTATTGTACGCAGTCTTTCCC 59.136 47.826 0.00 0.00 43.93 3.97
3951 9324 3.767673 TCTATTGTACGCAGTCTTTCCCT 59.232 43.478 0.00 0.00 43.93 4.20
3952 9325 4.951715 TCTATTGTACGCAGTCTTTCCCTA 59.048 41.667 0.00 0.00 43.93 3.53
3953 9326 3.308438 TTGTACGCAGTCTTTCCCTAC 57.692 47.619 0.00 0.00 43.93 3.18
3954 9327 2.241160 TGTACGCAGTCTTTCCCTACA 58.759 47.619 0.00 0.00 43.93 2.74
3955 9328 2.829720 TGTACGCAGTCTTTCCCTACAT 59.170 45.455 0.00 0.00 43.93 2.29
3956 9329 3.259876 TGTACGCAGTCTTTCCCTACATT 59.740 43.478 0.00 0.00 43.93 2.71
3957 9330 3.418684 ACGCAGTCTTTCCCTACATTT 57.581 42.857 0.00 0.00 29.74 2.32
3958 9331 3.335579 ACGCAGTCTTTCCCTACATTTC 58.664 45.455 0.00 0.00 29.74 2.17
3959 9332 3.008049 ACGCAGTCTTTCCCTACATTTCT 59.992 43.478 0.00 0.00 29.74 2.52
3960 9333 3.372206 CGCAGTCTTTCCCTACATTTCTG 59.628 47.826 0.00 0.00 0.00 3.02
3961 9334 3.127721 GCAGTCTTTCCCTACATTTCTGC 59.872 47.826 0.00 0.00 38.76 4.26
3962 9335 4.326826 CAGTCTTTCCCTACATTTCTGCA 58.673 43.478 0.00 0.00 0.00 4.41
3963 9336 4.761739 CAGTCTTTCCCTACATTTCTGCAA 59.238 41.667 0.00 0.00 0.00 4.08
3964 9337 5.006386 AGTCTTTCCCTACATTTCTGCAAG 58.994 41.667 0.00 0.00 0.00 4.01
3965 9338 5.003804 GTCTTTCCCTACATTTCTGCAAGA 58.996 41.667 0.00 0.00 44.68 3.02
3975 9348 3.329300 TCTGCAAGAGGCTGTTTCC 57.671 52.632 0.00 0.00 38.67 3.13
3976 9349 0.473755 TCTGCAAGAGGCTGTTTCCA 59.526 50.000 0.00 0.00 38.67 3.53
3977 9350 0.879765 CTGCAAGAGGCTGTTTCCAG 59.120 55.000 0.00 0.00 45.15 3.86
3978 9351 0.538057 TGCAAGAGGCTGTTTCCAGG 60.538 55.000 0.00 0.00 45.15 4.45
3979 9352 0.250901 GCAAGAGGCTGTTTCCAGGA 60.251 55.000 0.00 0.00 39.22 3.86
3980 9353 1.528129 CAAGAGGCTGTTTCCAGGAC 58.472 55.000 0.00 0.00 39.22 3.85
3981 9354 1.072965 CAAGAGGCTGTTTCCAGGACT 59.927 52.381 0.00 0.00 39.22 3.85
3982 9355 1.439543 AGAGGCTGTTTCCAGGACTT 58.560 50.000 0.00 0.00 39.22 3.01
3983 9356 1.072965 AGAGGCTGTTTCCAGGACTTG 59.927 52.381 0.00 0.00 39.22 3.16
3984 9357 1.072331 GAGGCTGTTTCCAGGACTTGA 59.928 52.381 0.00 0.00 39.22 3.02
3985 9358 1.494721 AGGCTGTTTCCAGGACTTGAA 59.505 47.619 0.00 0.00 39.22 2.69
3986 9359 1.609072 GGCTGTTTCCAGGACTTGAAC 59.391 52.381 0.00 0.00 39.22 3.18
3987 9360 1.609072 GCTGTTTCCAGGACTTGAACC 59.391 52.381 0.00 0.00 39.22 3.62
3988 9361 2.749800 GCTGTTTCCAGGACTTGAACCT 60.750 50.000 0.00 0.00 39.22 3.50
3994 9367 1.884235 CAGGACTTGAACCTGTGACC 58.116 55.000 0.00 0.00 46.71 4.02
3995 9368 1.140852 CAGGACTTGAACCTGTGACCA 59.859 52.381 0.00 0.00 46.71 4.02
3996 9369 2.057922 AGGACTTGAACCTGTGACCAT 58.942 47.619 0.00 0.00 36.30 3.55
3997 9370 2.154462 GGACTTGAACCTGTGACCATG 58.846 52.381 0.00 0.00 0.00 3.66
3998 9371 2.224523 GGACTTGAACCTGTGACCATGA 60.225 50.000 0.00 0.00 0.00 3.07
3999 9372 3.070018 GACTTGAACCTGTGACCATGAG 58.930 50.000 0.00 0.00 0.00 2.90
4000 9373 2.224621 ACTTGAACCTGTGACCATGAGG 60.225 50.000 0.00 0.00 42.21 3.86
4011 9384 2.864114 CCATGAGGTCACAAGGCAG 58.136 57.895 0.00 0.00 0.00 4.85
4012 9385 1.310933 CCATGAGGTCACAAGGCAGC 61.311 60.000 0.00 0.00 0.00 5.25
4013 9386 0.607217 CATGAGGTCACAAGGCAGCA 60.607 55.000 0.00 0.00 0.00 4.41
4014 9387 0.322277 ATGAGGTCACAAGGCAGCAG 60.322 55.000 0.00 0.00 0.00 4.24
4015 9388 2.282040 AGGTCACAAGGCAGCAGC 60.282 61.111 0.00 0.00 41.10 5.25
4016 9389 2.282040 GGTCACAAGGCAGCAGCT 60.282 61.111 0.00 0.00 41.70 4.24
4017 9390 1.900498 GGTCACAAGGCAGCAGCTT 60.900 57.895 0.00 0.00 41.70 3.74
4018 9391 1.458639 GGTCACAAGGCAGCAGCTTT 61.459 55.000 0.00 0.00 41.17 3.51
4019 9392 1.238439 GTCACAAGGCAGCAGCTTTA 58.762 50.000 0.00 0.00 38.07 1.85
4020 9393 1.068954 GTCACAAGGCAGCAGCTTTAC 60.069 52.381 0.00 0.00 38.07 2.01
4021 9394 0.242017 CACAAGGCAGCAGCTTTACC 59.758 55.000 0.00 0.00 38.07 2.85
4022 9395 0.178992 ACAAGGCAGCAGCTTTACCA 60.179 50.000 0.00 0.00 38.07 3.25
4023 9396 0.242017 CAAGGCAGCAGCTTTACCAC 59.758 55.000 0.00 0.00 38.07 4.16
4024 9397 0.111253 AAGGCAGCAGCTTTACCACT 59.889 50.000 0.00 0.00 38.40 4.00
4025 9398 0.607489 AGGCAGCAGCTTTACCACTG 60.607 55.000 0.00 0.00 41.70 3.66
4029 9402 2.870372 CAGCTTTACCACTGCGCC 59.130 61.111 4.18 0.00 0.00 6.53
4030 9403 1.965930 CAGCTTTACCACTGCGCCA 60.966 57.895 4.18 0.00 0.00 5.69
4031 9404 1.228124 AGCTTTACCACTGCGCCAA 60.228 52.632 4.18 0.00 0.00 4.52
4032 9405 1.210155 GCTTTACCACTGCGCCAAG 59.790 57.895 4.18 0.00 0.00 3.61
4033 9406 1.875963 CTTTACCACTGCGCCAAGG 59.124 57.895 4.18 6.21 0.00 3.61
4034 9407 2.200170 CTTTACCACTGCGCCAAGGC 62.200 60.000 4.18 0.00 37.85 4.35
4035 9408 2.690653 TTTACCACTGCGCCAAGGCT 62.691 55.000 4.18 0.00 39.32 4.58
4036 9409 3.605749 TACCACTGCGCCAAGGCTC 62.606 63.158 4.18 1.20 39.32 4.70
4242 9674 2.505819 GGTGGATGTCCTTGTATGGAGT 59.494 50.000 0.09 0.00 36.69 3.85
5067 11543 7.281324 TGGTACGTTATTTATTGCTGTTATGCT 59.719 33.333 0.00 0.00 0.00 3.79
5231 11762 4.767409 GGGTTTTCTTTAGAGCATCACCTT 59.233 41.667 0.00 0.00 37.82 3.50
5392 11933 5.359576 TCCAATGAACTGCTGTAAACTGTTT 59.640 36.000 10.98 10.98 30.47 2.83
5414 11955 2.545946 GTCATCCGCAGCCTTTAAGATC 59.454 50.000 0.00 0.00 0.00 2.75
6331 14353 0.314935 AGCTTGCCATTGTGTTTCCG 59.685 50.000 0.00 0.00 0.00 4.30
6530 14673 1.372582 AGCATGAACGGCATACACTG 58.627 50.000 0.00 0.00 34.82 3.66
6531 14674 1.066215 AGCATGAACGGCATACACTGA 60.066 47.619 0.00 0.00 34.82 3.41
6545 14688 5.511571 CATACACTGACATACTAGTGACCG 58.488 45.833 5.39 0.00 45.46 4.79
6619 14824 1.133976 GCTGATGGTGCTGGGATTACT 60.134 52.381 0.00 0.00 0.00 2.24
6708 14914 1.202855 AGGCTGACAAGTGAAGCATGT 60.203 47.619 11.12 0.00 38.73 3.21
6807 15018 2.433436 GCTGGTGGTACCCAACTTAAG 58.567 52.381 10.07 0.00 42.67 1.85
7388 15763 8.486210 TCTCTAGGCTAATTAAACACATGACAT 58.514 33.333 0.00 0.00 0.00 3.06
7482 15857 9.739276 TGATGACAGGTAAATGAAATTTCTAGT 57.261 29.630 18.64 6.54 44.81 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
78 79 7.950124 AGGGGTAGAATGGTATTTTCATATTGG 59.050 37.037 0.00 0.00 0.00 3.16
82 83 7.699709 TCAGGGGTAGAATGGTATTTTCATA 57.300 36.000 0.00 0.00 0.00 2.15
90 91 2.054799 GGCATCAGGGGTAGAATGGTA 58.945 52.381 0.00 0.00 0.00 3.25
146 293 3.784338 TGCAGGAAAAACTTTCAGCAAG 58.216 40.909 12.93 0.00 38.64 4.01
147 294 3.883830 TGCAGGAAAAACTTTCAGCAA 57.116 38.095 12.93 2.27 31.39 3.91
319 578 2.361757 TGCAAATACATATGCACCAGCC 59.638 45.455 1.58 0.00 46.87 4.85
362 621 3.393278 AGCTACACTCCTAGCTAGCTAGT 59.607 47.826 37.50 26.22 46.35 2.57
419 678 9.733219 GCGTTTAGATCACTAAAGTAGTAATCT 57.267 33.333 6.37 6.37 44.17 2.40
420 679 9.733219 AGCGTTTAGATCACTAAAGTAGTAATC 57.267 33.333 0.00 0.00 45.42 1.75
421 680 9.733219 GAGCGTTTAGATCACTAAAGTAGTAAT 57.267 33.333 0.00 0.00 45.42 1.89
422 681 8.954350 AGAGCGTTTAGATCACTAAAGTAGTAA 58.046 33.333 0.00 0.00 45.42 2.24
423 682 8.503458 AGAGCGTTTAGATCACTAAAGTAGTA 57.497 34.615 0.00 0.00 45.42 1.82
424 683 7.393841 AGAGCGTTTAGATCACTAAAGTAGT 57.606 36.000 0.00 0.00 45.42 2.73
425 684 9.953697 ATAAGAGCGTTTAGATCACTAAAGTAG 57.046 33.333 0.00 0.00 45.42 2.57
437 696 9.241317 CCGTAAAGAAATATAAGAGCGTTTAGA 57.759 33.333 0.00 0.00 0.00 2.10
438 697 9.241317 TCCGTAAAGAAATATAAGAGCGTTTAG 57.759 33.333 0.00 0.00 0.00 1.85
439 698 9.241317 CTCCGTAAAGAAATATAAGAGCGTTTA 57.759 33.333 0.00 0.00 0.00 2.01
440 699 7.224167 CCTCCGTAAAGAAATATAAGAGCGTTT 59.776 37.037 0.00 0.00 0.00 3.60
441 700 6.700520 CCTCCGTAAAGAAATATAAGAGCGTT 59.299 38.462 0.00 0.00 0.00 4.84
442 701 6.214399 CCTCCGTAAAGAAATATAAGAGCGT 58.786 40.000 0.00 0.00 0.00 5.07
443 702 5.634020 CCCTCCGTAAAGAAATATAAGAGCG 59.366 44.000 0.00 0.00 0.00 5.03
444 703 6.756221 TCCCTCCGTAAAGAAATATAAGAGC 58.244 40.000 0.00 0.00 0.00 4.09
445 704 7.953752 ACTCCCTCCGTAAAGAAATATAAGAG 58.046 38.462 0.00 0.00 0.00 2.85
446 705 7.909485 ACTCCCTCCGTAAAGAAATATAAGA 57.091 36.000 0.00 0.00 0.00 2.10
447 706 7.806960 CGTACTCCCTCCGTAAAGAAATATAAG 59.193 40.741 0.00 0.00 0.00 1.73
448 707 7.285401 ACGTACTCCCTCCGTAAAGAAATATAA 59.715 37.037 0.00 0.00 32.22 0.98
449 708 6.772716 ACGTACTCCCTCCGTAAAGAAATATA 59.227 38.462 0.00 0.00 32.22 0.86
450 709 5.595952 ACGTACTCCCTCCGTAAAGAAATAT 59.404 40.000 0.00 0.00 32.22 1.28
451 710 4.949856 ACGTACTCCCTCCGTAAAGAAATA 59.050 41.667 0.00 0.00 32.22 1.40
452 711 3.766051 ACGTACTCCCTCCGTAAAGAAAT 59.234 43.478 0.00 0.00 32.22 2.17
453 712 3.157087 ACGTACTCCCTCCGTAAAGAAA 58.843 45.455 0.00 0.00 32.22 2.52
454 713 2.795329 ACGTACTCCCTCCGTAAAGAA 58.205 47.619 0.00 0.00 32.22 2.52
455 714 2.496899 ACGTACTCCCTCCGTAAAGA 57.503 50.000 0.00 0.00 32.22 2.52
456 715 3.691609 ACTAACGTACTCCCTCCGTAAAG 59.308 47.826 0.00 0.00 33.88 1.85
457 716 3.686016 ACTAACGTACTCCCTCCGTAAA 58.314 45.455 0.00 0.00 33.88 2.01
458 717 3.350219 ACTAACGTACTCCCTCCGTAA 57.650 47.619 0.00 0.00 33.88 3.18
459 718 3.196901 TGTACTAACGTACTCCCTCCGTA 59.803 47.826 0.00 0.00 44.97 4.02
460 719 2.027192 TGTACTAACGTACTCCCTCCGT 60.027 50.000 0.00 0.00 44.97 4.69
461 720 2.632377 TGTACTAACGTACTCCCTCCG 58.368 52.381 0.00 0.00 44.97 4.63
462 721 3.243334 GCATGTACTAACGTACTCCCTCC 60.243 52.174 0.00 0.00 44.97 4.30
463 722 3.379372 TGCATGTACTAACGTACTCCCTC 59.621 47.826 0.00 0.00 44.97 4.30
464 723 3.359033 TGCATGTACTAACGTACTCCCT 58.641 45.455 0.00 0.00 44.97 4.20
465 724 3.788333 TGCATGTACTAACGTACTCCC 57.212 47.619 0.00 0.00 44.97 4.30
466 725 4.440103 CGAATGCATGTACTAACGTACTCC 59.560 45.833 0.00 0.00 44.97 3.85
467 726 4.085721 GCGAATGCATGTACTAACGTACTC 60.086 45.833 0.00 0.00 42.69 2.59
512 776 4.534794 TCATGCTGCATGTATTAACGTG 57.465 40.909 34.14 13.28 44.16 4.49
531 797 2.029369 GCACCACCGTACCGTTCA 59.971 61.111 0.00 0.00 0.00 3.18
550 816 2.239402 TGCATGCATGAGGGACTTTAGA 59.761 45.455 30.64 0.00 41.55 2.10
852 1426 1.004560 GGGCTTTTGGGCTTTGAGC 60.005 57.895 0.00 0.00 41.46 4.26
1079 1691 0.996762 GAGGAGGAGGAGGAGGAGGA 60.997 65.000 0.00 0.00 0.00 3.71
1080 1692 1.541672 GAGGAGGAGGAGGAGGAGG 59.458 68.421 0.00 0.00 0.00 4.30
1083 1695 0.998945 AGAGGAGGAGGAGGAGGAGG 60.999 65.000 0.00 0.00 0.00 4.30
1084 1696 0.478507 GAGAGGAGGAGGAGGAGGAG 59.521 65.000 0.00 0.00 0.00 3.69
1085 1697 0.047176 AGAGAGGAGGAGGAGGAGGA 59.953 60.000 0.00 0.00 0.00 3.71
1086 1698 0.478507 GAGAGAGGAGGAGGAGGAGG 59.521 65.000 0.00 0.00 0.00 4.30
1139 1785 0.744057 CTGACCTGCACACACACACA 60.744 55.000 0.00 0.00 0.00 3.72
1140 1786 1.439353 CCTGACCTGCACACACACAC 61.439 60.000 0.00 0.00 0.00 3.82
1246 1897 2.751837 GAGGCGGGGAAAAGCTGG 60.752 66.667 0.00 0.00 0.00 4.85
1592 3622 1.303317 CGGAAACCCTCCCCAGTTG 60.303 63.158 0.00 0.00 41.87 3.16
1595 3625 3.646715 TGCGGAAACCCTCCCCAG 61.647 66.667 0.00 0.00 41.87 4.45
1614 3644 2.093288 ACCATCATACTGCTCCACACAG 60.093 50.000 0.00 0.00 41.08 3.66
1672 3704 7.349412 ACAAGACAATCATAGTAGGAGTACC 57.651 40.000 0.00 0.00 0.00 3.34
1765 3797 9.028185 GCAGAAAAAGATTATTTAATGCAGAGG 57.972 33.333 0.00 0.00 35.54 3.69
1821 3853 5.123979 ACCAAATTCTGAATAACTCGCCTTC 59.876 40.000 2.85 0.00 0.00 3.46
2050 4110 3.559384 CCTTGACCCCTCCTTAGTTCAAC 60.559 52.174 0.00 0.00 0.00 3.18
2262 4495 1.909302 GAGAAGATCACCCTTGGGTCA 59.091 52.381 8.63 0.00 0.00 4.02
2325 4558 1.617018 CCTCAAGATGCCCTCCGACA 61.617 60.000 0.00 0.00 0.00 4.35
2623 4861 1.672356 ATGGTGGAGAACTGTGCGC 60.672 57.895 0.00 0.00 0.00 6.09
2807 5067 7.307160 GGGCAAAAATTAACAACTTTGACTAGC 60.307 37.037 4.37 0.00 37.05 3.42
2825 5086 6.438741 TGGTGTAAATCATAGATGGGCAAAAA 59.561 34.615 0.00 0.00 0.00 1.94
2868 5138 5.407407 AGTGTACAGCAGCAAGTAACTAT 57.593 39.130 0.00 0.00 0.00 2.12
3338 8637 5.164233 AGAACATAGCGATGAACGGATATG 58.836 41.667 14.19 0.00 42.83 1.78
3594 8923 7.936847 TCAGTACAGGTTTCAACAGAATACATT 59.063 33.333 0.00 0.00 0.00 2.71
3731 9102 8.721478 GTGATATGCATTCGTTGATATAAACCT 58.279 33.333 3.54 0.00 0.00 3.50
3844 9217 7.582719 TGCCCTTTAGATGTTGGTAAATCTAT 58.417 34.615 0.00 0.00 35.77 1.98
3845 9218 6.964464 TGCCCTTTAGATGTTGGTAAATCTA 58.036 36.000 0.00 0.00 34.91 1.98
3846 9219 5.826643 TGCCCTTTAGATGTTGGTAAATCT 58.173 37.500 0.00 0.00 37.01 2.40
3847 9220 5.450550 GCTGCCCTTTAGATGTTGGTAAATC 60.451 44.000 0.00 0.00 0.00 2.17
3848 9221 4.402474 GCTGCCCTTTAGATGTTGGTAAAT 59.598 41.667 0.00 0.00 0.00 1.40
3849 9222 3.761752 GCTGCCCTTTAGATGTTGGTAAA 59.238 43.478 0.00 0.00 0.00 2.01
3850 9223 3.352648 GCTGCCCTTTAGATGTTGGTAA 58.647 45.455 0.00 0.00 0.00 2.85
3851 9224 2.356741 GGCTGCCCTTTAGATGTTGGTA 60.357 50.000 7.66 0.00 0.00 3.25
3852 9225 1.616994 GGCTGCCCTTTAGATGTTGGT 60.617 52.381 7.66 0.00 0.00 3.67
3853 9226 1.106285 GGCTGCCCTTTAGATGTTGG 58.894 55.000 7.66 0.00 0.00 3.77
3854 9227 1.106285 GGGCTGCCCTTTAGATGTTG 58.894 55.000 30.42 0.00 41.34 3.33
3855 9228 0.033109 GGGGCTGCCCTTTAGATGTT 60.033 55.000 34.99 0.00 44.66 2.71
3856 9229 1.214305 TGGGGCTGCCCTTTAGATGT 61.214 55.000 34.99 0.00 44.66 3.06
3857 9230 0.466922 CTGGGGCTGCCCTTTAGATG 60.467 60.000 34.99 14.43 44.66 2.90
3858 9231 0.921256 ACTGGGGCTGCCCTTTAGAT 60.921 55.000 34.99 17.78 44.66 1.98
3859 9232 1.541368 ACTGGGGCTGCCCTTTAGA 60.541 57.895 34.99 14.32 44.66 2.10
3860 9233 1.379044 CACTGGGGCTGCCCTTTAG 60.379 63.158 34.99 29.15 44.66 1.85
3861 9234 2.763215 CACTGGGGCTGCCCTTTA 59.237 61.111 34.99 20.90 44.66 1.85
3866 9239 3.643595 TACATGCACTGGGGCTGCC 62.644 63.158 11.05 11.05 33.36 4.85
3867 9240 2.045045 TACATGCACTGGGGCTGC 60.045 61.111 0.00 0.00 35.03 5.25
3868 9241 2.117156 GCTACATGCACTGGGGCTG 61.117 63.158 0.00 0.00 42.31 4.85
3869 9242 2.262774 GAGCTACATGCACTGGGGCT 62.263 60.000 13.29 13.29 45.94 5.19
3870 9243 1.821332 GAGCTACATGCACTGGGGC 60.821 63.158 0.00 0.00 45.94 5.80
3871 9244 1.153086 GGAGCTACATGCACTGGGG 60.153 63.158 0.00 0.00 45.94 4.96
3872 9245 1.153086 GGGAGCTACATGCACTGGG 60.153 63.158 0.00 0.00 45.94 4.45
3873 9246 0.745845 GTGGGAGCTACATGCACTGG 60.746 60.000 0.00 0.00 45.94 4.00
3874 9247 0.251354 AGTGGGAGCTACATGCACTG 59.749 55.000 5.61 0.00 45.94 3.66
3875 9248 0.987294 AAGTGGGAGCTACATGCACT 59.013 50.000 0.00 0.00 45.94 4.40
3876 9249 1.089920 CAAGTGGGAGCTACATGCAC 58.910 55.000 0.00 0.00 45.94 4.57
3877 9250 0.677731 GCAAGTGGGAGCTACATGCA 60.678 55.000 9.77 0.00 45.94 3.96
3878 9251 1.709147 CGCAAGTGGGAGCTACATGC 61.709 60.000 0.00 1.36 38.85 4.06
3879 9252 1.709147 GCGCAAGTGGGAGCTACATG 61.709 60.000 0.30 0.00 41.68 3.21
3880 9253 1.450312 GCGCAAGTGGGAGCTACAT 60.450 57.895 0.30 0.00 41.68 2.29
3881 9254 2.047274 GCGCAAGTGGGAGCTACA 60.047 61.111 0.30 0.00 41.68 2.74
3882 9255 2.047274 TGCGCAAGTGGGAGCTAC 60.047 61.111 8.16 0.00 41.68 3.58
3883 9256 2.265739 CTGCGCAAGTGGGAGCTA 59.734 61.111 13.05 0.00 41.68 3.32
3884 9257 4.711949 CCTGCGCAAGTGGGAGCT 62.712 66.667 13.05 0.00 41.68 4.09
3889 9262 3.052082 CAGACCCTGCGCAAGTGG 61.052 66.667 16.73 16.51 41.68 4.00
3890 9263 3.052082 CCAGACCCTGCGCAAGTG 61.052 66.667 16.73 8.09 41.68 3.16
3891 9264 4.335647 CCCAGACCCTGCGCAAGT 62.336 66.667 13.05 12.57 41.68 3.16
3898 9271 2.689034 GACCCTCCCCAGACCCTG 60.689 72.222 0.00 0.00 0.00 4.45
3899 9272 4.026357 GGACCCTCCCCAGACCCT 62.026 72.222 0.00 0.00 0.00 4.34
3901 9274 4.393778 TCGGACCCTCCCCAGACC 62.394 72.222 0.00 0.00 31.13 3.85
3902 9275 3.075641 GTCGGACCCTCCCCAGAC 61.076 72.222 0.00 0.00 31.13 3.51
3903 9276 4.393778 GGTCGGACCCTCCCCAGA 62.394 72.222 16.55 0.00 31.13 3.86
3904 9277 4.715130 TGGTCGGACCCTCCCCAG 62.715 72.222 23.81 0.00 37.50 4.45
3906 9279 4.716977 AGTGGTCGGACCCTCCCC 62.717 72.222 23.81 7.17 37.50 4.81
3907 9280 2.222013 AAAGTGGTCGGACCCTCCC 61.222 63.158 23.81 9.51 37.50 4.30
3908 9281 1.003718 CAAAGTGGTCGGACCCTCC 60.004 63.158 23.81 11.90 37.50 4.30
3909 9282 1.003718 CCAAAGTGGTCGGACCCTC 60.004 63.158 23.81 16.29 37.50 4.30
3910 9283 2.526046 CCCAAAGTGGTCGGACCCT 61.526 63.158 23.81 16.82 37.50 4.34
3911 9284 2.033602 CCCAAAGTGGTCGGACCC 59.966 66.667 23.81 14.91 37.50 4.46
3912 9285 1.302271 GACCCAAAGTGGTCGGACC 60.302 63.158 20.36 20.36 44.98 4.46
3913 9286 4.373771 GACCCAAAGTGGTCGGAC 57.626 61.111 0.00 0.00 44.98 4.79
3918 9291 3.867216 GCGTACAATAGACCCAAAGTGGT 60.867 47.826 0.00 0.00 42.79 4.16
3919 9292 2.676342 GCGTACAATAGACCCAAAGTGG 59.324 50.000 0.00 0.00 37.25 4.00
3920 9293 3.331150 TGCGTACAATAGACCCAAAGTG 58.669 45.455 0.00 0.00 0.00 3.16
3921 9294 3.007614 ACTGCGTACAATAGACCCAAAGT 59.992 43.478 0.00 0.00 0.00 2.66
3922 9295 3.596214 ACTGCGTACAATAGACCCAAAG 58.404 45.455 0.00 0.00 0.00 2.77
3923 9296 3.259876 AGACTGCGTACAATAGACCCAAA 59.740 43.478 0.00 0.00 0.00 3.28
3924 9297 2.829720 AGACTGCGTACAATAGACCCAA 59.170 45.455 0.00 0.00 0.00 4.12
3925 9298 2.453521 AGACTGCGTACAATAGACCCA 58.546 47.619 0.00 0.00 0.00 4.51
3926 9299 3.521947 AAGACTGCGTACAATAGACCC 57.478 47.619 0.00 0.00 0.00 4.46
3927 9300 3.864003 GGAAAGACTGCGTACAATAGACC 59.136 47.826 0.00 0.00 0.00 3.85
3928 9301 3.864003 GGGAAAGACTGCGTACAATAGAC 59.136 47.826 0.00 0.00 0.00 2.59
3929 9302 3.767673 AGGGAAAGACTGCGTACAATAGA 59.232 43.478 0.00 0.00 0.00 1.98
3930 9303 4.124851 AGGGAAAGACTGCGTACAATAG 57.875 45.455 0.00 0.00 0.00 1.73
3931 9304 4.463539 TGTAGGGAAAGACTGCGTACAATA 59.536 41.667 0.00 0.00 41.82 1.90
3932 9305 3.259876 TGTAGGGAAAGACTGCGTACAAT 59.740 43.478 0.00 0.00 41.82 2.71
3933 9306 2.629137 TGTAGGGAAAGACTGCGTACAA 59.371 45.455 0.00 0.00 41.82 2.41
3934 9307 2.241160 TGTAGGGAAAGACTGCGTACA 58.759 47.619 0.00 0.00 42.31 2.90
3935 9308 3.521947 ATGTAGGGAAAGACTGCGTAC 57.478 47.619 0.00 0.00 37.28 3.67
3936 9309 4.222145 AGAAATGTAGGGAAAGACTGCGTA 59.778 41.667 0.00 0.00 0.00 4.42
3937 9310 3.008049 AGAAATGTAGGGAAAGACTGCGT 59.992 43.478 0.00 0.00 0.00 5.24
3938 9311 3.372206 CAGAAATGTAGGGAAAGACTGCG 59.628 47.826 0.00 0.00 0.00 5.18
3939 9312 3.127721 GCAGAAATGTAGGGAAAGACTGC 59.872 47.826 0.00 0.00 40.55 4.40
3940 9313 4.326826 TGCAGAAATGTAGGGAAAGACTG 58.673 43.478 0.00 0.00 0.00 3.51
3941 9314 4.640771 TGCAGAAATGTAGGGAAAGACT 57.359 40.909 0.00 0.00 0.00 3.24
3942 9315 5.003804 TCTTGCAGAAATGTAGGGAAAGAC 58.996 41.667 0.00 0.00 0.00 3.01
3943 9316 5.241403 TCTTGCAGAAATGTAGGGAAAGA 57.759 39.130 0.00 0.00 0.00 2.52
3944 9317 4.397417 CCTCTTGCAGAAATGTAGGGAAAG 59.603 45.833 0.00 0.00 0.00 2.62
3945 9318 4.335416 CCTCTTGCAGAAATGTAGGGAAA 58.665 43.478 0.00 0.00 0.00 3.13
3946 9319 3.873801 GCCTCTTGCAGAAATGTAGGGAA 60.874 47.826 0.00 0.00 40.77 3.97
3947 9320 2.356125 GCCTCTTGCAGAAATGTAGGGA 60.356 50.000 0.00 0.00 40.77 4.20
3948 9321 2.019984 GCCTCTTGCAGAAATGTAGGG 58.980 52.381 0.00 0.00 40.77 3.53
3949 9322 2.681848 CAGCCTCTTGCAGAAATGTAGG 59.318 50.000 0.00 0.00 44.83 3.18
3950 9323 3.341823 ACAGCCTCTTGCAGAAATGTAG 58.658 45.455 0.00 0.00 44.83 2.74
3951 9324 3.423539 ACAGCCTCTTGCAGAAATGTA 57.576 42.857 0.00 0.00 44.83 2.29
3952 9325 2.283145 ACAGCCTCTTGCAGAAATGT 57.717 45.000 0.00 0.00 44.83 2.71
3953 9326 3.572584 GAAACAGCCTCTTGCAGAAATG 58.427 45.455 0.00 0.00 44.83 2.32
3954 9327 2.560105 GGAAACAGCCTCTTGCAGAAAT 59.440 45.455 0.00 0.00 44.83 2.17
3955 9328 1.956477 GGAAACAGCCTCTTGCAGAAA 59.044 47.619 0.00 0.00 44.83 2.52
3956 9329 1.133823 TGGAAACAGCCTCTTGCAGAA 60.134 47.619 0.00 0.00 44.83 3.02
3957 9330 0.473755 TGGAAACAGCCTCTTGCAGA 59.526 50.000 0.00 0.00 44.83 4.26
3958 9331 3.025924 TGGAAACAGCCTCTTGCAG 57.974 52.632 0.00 0.00 44.83 4.41
3969 9342 2.930950 CAGGTTCAAGTCCTGGAAACA 58.069 47.619 0.00 0.00 46.03 2.83
3976 9349 1.507140 TGGTCACAGGTTCAAGTCCT 58.493 50.000 0.00 0.00 35.45 3.85
3977 9350 2.154462 CATGGTCACAGGTTCAAGTCC 58.846 52.381 0.00 0.00 0.00 3.85
3978 9351 3.070018 CTCATGGTCACAGGTTCAAGTC 58.930 50.000 0.00 0.00 0.00 3.01
3979 9352 2.224621 CCTCATGGTCACAGGTTCAAGT 60.225 50.000 0.00 0.00 0.00 3.16
3980 9353 2.224621 ACCTCATGGTCACAGGTTCAAG 60.225 50.000 0.00 0.00 44.78 3.02
3981 9354 1.774254 ACCTCATGGTCACAGGTTCAA 59.226 47.619 0.00 0.00 44.78 2.69
3982 9355 1.434188 ACCTCATGGTCACAGGTTCA 58.566 50.000 0.00 0.00 44.78 3.18
3993 9366 1.310933 GCTGCCTTGTGACCTCATGG 61.311 60.000 0.00 0.00 39.83 3.66
3994 9367 0.607217 TGCTGCCTTGTGACCTCATG 60.607 55.000 0.00 0.00 0.00 3.07
3995 9368 0.322277 CTGCTGCCTTGTGACCTCAT 60.322 55.000 0.00 0.00 0.00 2.90
3996 9369 1.071987 CTGCTGCCTTGTGACCTCA 59.928 57.895 0.00 0.00 0.00 3.86
3997 9370 2.331132 GCTGCTGCCTTGTGACCTC 61.331 63.158 3.85 0.00 0.00 3.85
3998 9371 2.282040 GCTGCTGCCTTGTGACCT 60.282 61.111 3.85 0.00 0.00 3.85
3999 9372 1.458639 AAAGCTGCTGCCTTGTGACC 61.459 55.000 12.44 0.00 40.80 4.02
4000 9373 1.068954 GTAAAGCTGCTGCCTTGTGAC 60.069 52.381 12.44 0.00 40.80 3.67
4001 9374 1.238439 GTAAAGCTGCTGCCTTGTGA 58.762 50.000 12.44 0.00 40.80 3.58
4002 9375 0.242017 GGTAAAGCTGCTGCCTTGTG 59.758 55.000 12.44 0.00 40.80 3.33
4003 9376 0.178992 TGGTAAAGCTGCTGCCTTGT 60.179 50.000 12.44 0.00 40.80 3.16
4004 9377 0.242017 GTGGTAAAGCTGCTGCCTTG 59.758 55.000 12.44 0.00 40.80 3.61
4005 9378 0.111253 AGTGGTAAAGCTGCTGCCTT 59.889 50.000 12.44 8.34 40.80 4.35
4006 9379 0.607489 CAGTGGTAAAGCTGCTGCCT 60.607 55.000 12.44 2.45 40.80 4.75
4007 9380 1.878775 CAGTGGTAAAGCTGCTGCC 59.121 57.895 12.44 7.07 40.80 4.85
4012 9385 1.514678 TTGGCGCAGTGGTAAAGCTG 61.515 55.000 10.83 0.00 35.93 4.24
4013 9386 1.228124 TTGGCGCAGTGGTAAAGCT 60.228 52.632 10.83 0.00 0.00 3.74
4014 9387 1.210155 CTTGGCGCAGTGGTAAAGC 59.790 57.895 10.83 0.00 0.00 3.51
4015 9388 1.875963 CCTTGGCGCAGTGGTAAAG 59.124 57.895 10.83 0.71 0.00 1.85
4016 9389 2.265182 GCCTTGGCGCAGTGGTAAA 61.265 57.895 10.83 0.00 0.00 2.01
4017 9390 2.671619 GCCTTGGCGCAGTGGTAA 60.672 61.111 10.83 0.00 0.00 2.85
4018 9391 3.605749 GAGCCTTGGCGCAGTGGTA 62.606 63.158 10.83 0.00 0.00 3.25
4026 9399 1.983119 TATGAAGGGGAGCCTTGGCG 61.983 60.000 5.95 0.00 0.00 5.69
4027 9400 0.179006 CTATGAAGGGGAGCCTTGGC 60.179 60.000 2.97 2.97 0.00 4.52
4028 9401 1.511613 TCTATGAAGGGGAGCCTTGG 58.488 55.000 0.00 0.00 0.00 3.61
4029 9402 3.872459 AATCTATGAAGGGGAGCCTTG 57.128 47.619 0.00 0.00 0.00 3.61
4030 9403 4.104897 GGTAAATCTATGAAGGGGAGCCTT 59.895 45.833 0.00 0.00 0.00 4.35
4031 9404 3.653352 GGTAAATCTATGAAGGGGAGCCT 59.347 47.826 0.00 0.00 0.00 4.58
4032 9405 3.394606 TGGTAAATCTATGAAGGGGAGCC 59.605 47.826 0.00 0.00 0.00 4.70
4033 9406 4.706842 TGGTAAATCTATGAAGGGGAGC 57.293 45.455 0.00 0.00 0.00 4.70
4034 9407 6.001449 TGTTGGTAAATCTATGAAGGGGAG 57.999 41.667 0.00 0.00 0.00 4.30
4035 9408 6.389869 AGATGTTGGTAAATCTATGAAGGGGA 59.610 38.462 0.00 0.00 31.31 4.81
4036 9409 6.605119 AGATGTTGGTAAATCTATGAAGGGG 58.395 40.000 0.00 0.00 31.31 4.79
4037 9410 7.661847 GGTAGATGTTGGTAAATCTATGAAGGG 59.338 40.741 0.00 0.00 37.63 3.95
4038 9411 8.210946 TGGTAGATGTTGGTAAATCTATGAAGG 58.789 37.037 0.00 0.00 37.63 3.46
4039 9412 9.613428 TTGGTAGATGTTGGTAAATCTATGAAG 57.387 33.333 0.00 0.00 37.63 3.02
4040 9413 9.967451 TTTGGTAGATGTTGGTAAATCTATGAA 57.033 29.630 0.00 0.00 37.63 2.57
4041 9414 9.391006 GTTTGGTAGATGTTGGTAAATCTATGA 57.609 33.333 0.00 0.00 37.63 2.15
4042 9415 8.621286 GGTTTGGTAGATGTTGGTAAATCTATG 58.379 37.037 0.00 0.00 37.63 2.23
4219 9651 2.916269 TCCATACAAGGACATCCACCAA 59.084 45.455 0.00 0.00 38.89 3.67
4242 9674 0.109723 GGTACTTGTGGCCTTGTGGA 59.890 55.000 3.32 0.00 34.57 4.02
4452 9909 7.658167 TCAGAGTAAATGAACGAATACCAACAA 59.342 33.333 0.00 0.00 0.00 2.83
5231 11762 9.606631 AACTACTTCAATTTTATTGTTTTGGCA 57.393 25.926 0.00 0.00 0.00 4.92
5392 11933 1.277842 TCTTAAAGGCTGCGGATGACA 59.722 47.619 0.00 0.00 0.00 3.58
5961 13737 6.892310 AGAAAACTGTTCAGCAAACAAATC 57.108 33.333 6.21 3.35 46.95 2.17
6061 13839 1.940613 GCAGGTTAATTAGTCCCGCAG 59.059 52.381 10.26 0.89 0.00 5.18
6331 14353 6.740110 AGCAACTATATAGACTGCACAGTAC 58.260 40.000 27.82 9.98 42.66 2.73
6530 14673 1.749634 ACTGCCGGTCACTAGTATGTC 59.250 52.381 1.90 0.00 0.00 3.06
6531 14674 1.848652 ACTGCCGGTCACTAGTATGT 58.151 50.000 1.90 0.00 0.00 2.29
6545 14688 4.030452 GTCCAGCGTGCAACTGCC 62.030 66.667 11.62 2.35 41.18 4.85
6708 14914 6.287525 CCAAAAGAGCATTTCCCTAACAAAA 58.712 36.000 0.00 0.00 0.00 2.44
6807 15018 6.724694 TTCAACGACTCTAGAGTTAGACTC 57.275 41.667 25.86 11.37 45.38 3.36
7388 15763 6.662865 TTTGACAGGGCAAGAATAAATTCA 57.337 33.333 5.55 0.00 39.23 2.57
7490 15865 6.339587 ACTAGAAATTTCATTTTCCCGCAA 57.660 33.333 19.99 0.00 36.47 4.85
7491 15866 5.975693 ACTAGAAATTTCATTTTCCCGCA 57.024 34.783 19.99 0.00 36.47 5.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.