Multiple sequence alignment - TraesCS2D01G558400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G558400 chr2D 100.000 4209 0 0 1 4209 631405234 631409442 0.000000e+00 7773.0
1 TraesCS2D01G558400 chr2D 93.023 86 5 1 2544 2628 97219731 97219646 1.590000e-24 124.0
2 TraesCS2D01G558400 chr2B 95.588 1904 60 14 899 2782 774874875 774876774 0.000000e+00 3029.0
3 TraesCS2D01G558400 chr2B 96.157 1327 46 1 2812 4138 774876771 774878092 0.000000e+00 2163.0
4 TraesCS2D01G558400 chr2B 89.414 529 17 8 2795 3303 793805611 793805102 7.680000e-177 630.0
5 TraesCS2D01G558400 chr2B 89.206 491 23 8 2262 2729 793806239 793805756 1.690000e-163 586.0
6 TraesCS2D01G558400 chr2B 85.961 406 34 10 3484 3880 793805103 793804712 3.030000e-111 412.0
7 TraesCS2D01G558400 chr2B 94.118 136 7 1 1 136 774847397 774847531 5.520000e-49 206.0
8 TraesCS2D01G558400 chr2B 96.078 102 4 0 177 278 774867760 774867861 2.600000e-37 167.0
9 TraesCS2D01G558400 chr2B 95.283 106 4 1 173 278 774868638 774868742 2.600000e-37 167.0
10 TraesCS2D01G558400 chr2B 94.340 106 5 1 173 278 774868417 774868521 1.210000e-35 161.0
11 TraesCS2D01G558400 chr2B 83.684 190 7 6 173 362 774867978 774868143 1.570000e-34 158.0
12 TraesCS2D01G558400 chr2B 93.939 99 5 1 173 271 774868860 774868957 9.430000e-32 148.0
13 TraesCS2D01G558400 chr2B 82.632 190 6 11 173 362 774868199 774868361 4.390000e-30 143.0
14 TraesCS2D01G558400 chr2B 95.082 61 3 0 302 362 774867862 774867922 3.460000e-16 97.1
15 TraesCS2D01G558400 chr2B 94.737 38 1 1 827 864 793751013 793750977 1.630000e-04 58.4
16 TraesCS2D01G558400 chr3A 88.523 2187 84 56 1645 3738 663182249 663180137 0.000000e+00 2494.0
17 TraesCS2D01G558400 chr3A 83.313 827 56 37 824 1616 663183142 663182364 0.000000e+00 688.0
18 TraesCS2D01G558400 chr3A 86.796 568 39 17 206 762 663183698 663183156 6.020000e-168 601.0
19 TraesCS2D01G558400 chr7A 90.805 87 7 1 2543 2628 457794586 457794672 9.560000e-22 115.0
20 TraesCS2D01G558400 chr5B 94.667 75 3 1 2544 2617 582158137 582158211 9.560000e-22 115.0
21 TraesCS2D01G558400 chr5B 88.764 89 9 1 2540 2627 213255207 213255295 1.600000e-19 108.0
22 TraesCS2D01G558400 chr5B 79.279 111 22 1 4074 4184 685568305 685568196 4.510000e-10 76.8
23 TraesCS2D01G558400 chr5D 90.698 86 7 1 2543 2627 197147184 197147099 3.440000e-21 113.0
24 TraesCS2D01G558400 chr5A 89.888 89 8 1 2540 2627 227928518 227928606 3.440000e-21 113.0
25 TraesCS2D01G558400 chr1D 88.095 84 10 0 3 86 303505802 303505885 2.680000e-17 100.0
26 TraesCS2D01G558400 chr1A 88.095 84 10 0 3 86 381094639 381094722 2.680000e-17 100.0
27 TraesCS2D01G558400 chr3B 81.443 97 9 5 11 98 585702682 585702778 2.100000e-08 71.3
28 TraesCS2D01G558400 chr4A 80.208 96 10 5 11 97 736876869 736876774 3.510000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G558400 chr2D 631405234 631409442 4208 False 7773.000000 7773 100.000000 1 4209 1 chr2D.!!$F1 4208
1 TraesCS2D01G558400 chr2B 774874875 774878092 3217 False 2596.000000 3029 95.872500 899 4138 2 chr2B.!!$F3 3239
2 TraesCS2D01G558400 chr2B 793804712 793806239 1527 True 542.666667 630 88.193667 2262 3880 3 chr2B.!!$R2 1618
3 TraesCS2D01G558400 chr3A 663180137 663183698 3561 True 1261.000000 2494 86.210667 206 3738 3 chr3A.!!$R1 3532

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
193 194 0.033109 AGGTAAATGCAAGAGGCCCC 60.033 55.000 0.00 0.00 43.89 5.80 F
526 543 0.107165 CCCCGAAGTCCTTCCCAATC 60.107 60.000 1.61 0.00 36.27 2.67 F
527 544 0.107165 CCCGAAGTCCTTCCCAATCC 60.107 60.000 1.61 0.00 36.27 3.01 F
528 545 0.107165 CCGAAGTCCTTCCCAATCCC 60.107 60.000 1.61 0.00 36.27 3.85 F
651 669 0.324285 ATCAGGCAGGCTAGCTATGC 59.676 55.000 27.10 27.10 39.25 3.14 F
732 750 0.476771 GAGGAGGAGGAGACGGAGAT 59.523 60.000 0.00 0.00 0.00 2.75 F
1333 1396 1.153289 CCTGAGCCATTCGACAGGG 60.153 63.158 9.14 1.21 44.04 4.45 F
1723 1891 1.153353 TCTCAAGCGGCCTTTAAACG 58.847 50.000 0.00 0.00 0.00 3.60 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1061 1091 1.527433 GGCAGAAACCTTGGCTGACC 61.527 60.000 0.0 0.0 38.03 4.02 R
1333 1396 1.597663 CCTGTTCCAGTTGTGTTCGAC 59.402 52.381 0.0 0.0 0.00 4.20 R
1558 1629 2.360801 GAGCAAAGCGAGAGGAGTAGAT 59.639 50.000 0.0 0.0 0.00 1.98 R
1641 1804 3.383185 TGTTTGGTTGTGGGACAAATCTC 59.617 43.478 0.0 0.0 44.16 2.75 R
2610 2836 1.220750 CTAGTACCCCCTCTGTCCCAT 59.779 57.143 0.0 0.0 0.00 4.00 R
2617 2843 3.538980 TCCCATAAACTAGTACCCCCTCT 59.461 47.826 0.0 0.0 0.00 3.69 R
2847 3215 1.204704 TCGGTAACTGGCTCATCTGTG 59.795 52.381 0.0 0.0 0.00 3.66 R
3361 3759 0.537600 ATGCCAGAGCCATCATCTGC 60.538 55.000 0.0 0.0 42.36 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 5.818136 TTACTTGCTGCTAAATGGCTTAG 57.182 39.130 0.00 0.00 40.17 2.18
42 43 4.619227 GGCCGCAATAGCCCGCTA 62.619 66.667 0.00 0.00 45.16 4.26
43 44 2.358737 GCCGCAATAGCCCGCTAT 60.359 61.111 3.31 3.31 40.63 2.97
44 45 1.079405 GCCGCAATAGCCCGCTATA 60.079 57.895 9.56 0.00 38.20 1.31
45 46 1.084370 GCCGCAATAGCCCGCTATAG 61.084 60.000 9.56 0.00 38.20 1.31
46 47 1.084370 CCGCAATAGCCCGCTATAGC 61.084 60.000 15.09 15.09 38.20 2.97
57 58 3.396951 GCTATAGCGGCTGGGAAAA 57.603 52.632 13.86 0.00 0.00 2.29
58 59 1.230324 GCTATAGCGGCTGGGAAAAG 58.770 55.000 13.86 2.11 0.00 2.27
59 60 1.230324 CTATAGCGGCTGGGAAAAGC 58.770 55.000 13.86 0.00 42.75 3.51
60 61 0.837272 TATAGCGGCTGGGAAAAGCT 59.163 50.000 13.86 0.00 43.06 3.74
61 62 0.837272 ATAGCGGCTGGGAAAAGCTA 59.163 50.000 13.86 0.00 43.06 3.32
62 63 0.107848 TAGCGGCTGGGAAAAGCTAC 60.108 55.000 13.86 0.00 43.06 3.58
63 64 1.377333 GCGGCTGGGAAAAGCTACT 60.377 57.895 0.00 0.00 43.06 2.57
64 65 1.648467 GCGGCTGGGAAAAGCTACTG 61.648 60.000 0.00 0.00 43.06 2.74
65 66 1.026718 CGGCTGGGAAAAGCTACTGG 61.027 60.000 0.00 0.00 43.06 4.00
66 67 0.681243 GGCTGGGAAAAGCTACTGGG 60.681 60.000 0.00 0.00 43.06 4.45
67 68 0.328258 GCTGGGAAAAGCTACTGGGA 59.672 55.000 0.00 0.00 40.20 4.37
68 69 1.271926 GCTGGGAAAAGCTACTGGGAA 60.272 52.381 0.00 0.00 40.20 3.97
69 70 2.817839 GCTGGGAAAAGCTACTGGGAAA 60.818 50.000 0.00 0.00 40.20 3.13
70 71 3.701664 CTGGGAAAAGCTACTGGGAAAT 58.298 45.455 0.00 0.00 0.00 2.17
71 72 3.696548 CTGGGAAAAGCTACTGGGAAATC 59.303 47.826 0.00 0.00 0.00 2.17
72 73 3.075283 TGGGAAAAGCTACTGGGAAATCA 59.925 43.478 0.00 0.00 0.00 2.57
73 74 4.086457 GGGAAAAGCTACTGGGAAATCAA 58.914 43.478 0.00 0.00 0.00 2.57
74 75 4.526650 GGGAAAAGCTACTGGGAAATCAAA 59.473 41.667 0.00 0.00 0.00 2.69
75 76 5.187772 GGGAAAAGCTACTGGGAAATCAAAT 59.812 40.000 0.00 0.00 0.00 2.32
76 77 6.295859 GGGAAAAGCTACTGGGAAATCAAATT 60.296 38.462 0.00 0.00 0.00 1.82
77 78 6.591448 GGAAAAGCTACTGGGAAATCAAATTG 59.409 38.462 0.00 0.00 0.00 2.32
78 79 4.725790 AGCTACTGGGAAATCAAATTGC 57.274 40.909 0.00 0.00 0.00 3.56
79 80 3.448660 AGCTACTGGGAAATCAAATTGCC 59.551 43.478 0.00 0.00 40.87 4.52
80 81 3.448660 GCTACTGGGAAATCAAATTGCCT 59.551 43.478 0.00 0.00 41.06 4.75
81 82 3.967332 ACTGGGAAATCAAATTGCCTG 57.033 42.857 3.57 3.57 41.06 4.85
82 83 2.027837 ACTGGGAAATCAAATTGCCTGC 60.028 45.455 4.77 0.00 41.41 4.85
83 84 1.067000 TGGGAAATCAAATTGCCTGCG 60.067 47.619 0.00 0.00 41.06 5.18
84 85 1.204467 GGGAAATCAAATTGCCTGCGA 59.796 47.619 0.00 0.00 38.12 5.10
85 86 2.159057 GGGAAATCAAATTGCCTGCGAT 60.159 45.455 0.00 0.00 38.12 4.58
86 87 3.524541 GGAAATCAAATTGCCTGCGATT 58.475 40.909 0.00 0.00 34.89 3.34
87 88 3.934579 GGAAATCAAATTGCCTGCGATTT 59.065 39.130 10.82 10.82 39.78 2.17
88 89 4.392754 GGAAATCAAATTGCCTGCGATTTT 59.607 37.500 13.40 1.40 37.79 1.82
89 90 5.580297 GGAAATCAAATTGCCTGCGATTTTA 59.420 36.000 13.40 7.68 37.79 1.52
90 91 6.091986 GGAAATCAAATTGCCTGCGATTTTAA 59.908 34.615 13.40 6.81 37.79 1.52
91 92 7.360776 GGAAATCAAATTGCCTGCGATTTTAAA 60.361 33.333 13.40 4.75 37.79 1.52
92 93 5.837586 TCAAATTGCCTGCGATTTTAAAC 57.162 34.783 13.40 0.00 37.79 2.01
93 94 4.688413 TCAAATTGCCTGCGATTTTAAACC 59.312 37.500 13.40 0.00 37.79 3.27
94 95 4.535526 AATTGCCTGCGATTTTAAACCT 57.464 36.364 0.00 0.00 0.00 3.50
95 96 4.535526 ATTGCCTGCGATTTTAAACCTT 57.464 36.364 0.00 0.00 0.00 3.50
96 97 3.296322 TGCCTGCGATTTTAAACCTTG 57.704 42.857 0.00 0.00 0.00 3.61
97 98 1.992667 GCCTGCGATTTTAAACCTTGC 59.007 47.619 0.00 0.00 0.00 4.01
98 99 2.352715 GCCTGCGATTTTAAACCTTGCT 60.353 45.455 9.49 0.00 0.00 3.91
99 100 3.860754 GCCTGCGATTTTAAACCTTGCTT 60.861 43.478 9.49 0.00 0.00 3.91
100 101 3.674753 CCTGCGATTTTAAACCTTGCTTG 59.325 43.478 9.49 4.46 0.00 4.01
101 102 3.056304 TGCGATTTTAAACCTTGCTTGC 58.944 40.909 9.49 0.00 0.00 4.01
102 103 3.243704 TGCGATTTTAAACCTTGCTTGCT 60.244 39.130 9.49 0.00 0.00 3.91
103 104 3.364920 GCGATTTTAAACCTTGCTTGCTC 59.635 43.478 0.00 0.00 0.00 4.26
104 105 4.545610 CGATTTTAAACCTTGCTTGCTCA 58.454 39.130 0.00 0.00 0.00 4.26
105 106 4.618489 CGATTTTAAACCTTGCTTGCTCAG 59.382 41.667 0.00 0.00 0.00 3.35
118 119 4.029186 CTCAGCGCCGCAAGCAAA 62.029 61.111 13.36 0.00 44.04 3.68
119 120 4.326766 TCAGCGCCGCAAGCAAAC 62.327 61.111 13.36 0.00 44.04 2.93
120 121 4.627447 CAGCGCCGCAAGCAAACA 62.627 61.111 13.36 0.00 44.04 2.83
121 122 4.332637 AGCGCCGCAAGCAAACAG 62.333 61.111 13.36 0.00 44.04 3.16
123 124 3.659092 CGCCGCAAGCAAACAGGA 61.659 61.111 0.00 0.00 44.04 3.86
124 125 2.256461 GCCGCAAGCAAACAGGAG 59.744 61.111 0.00 0.00 42.97 3.69
125 126 2.256461 CCGCAAGCAAACAGGAGC 59.744 61.111 0.00 0.00 0.00 4.70
126 127 2.127118 CGCAAGCAAACAGGAGCG 60.127 61.111 0.00 0.00 39.17 5.03
127 128 3.343972 GCAAGCAAACAGGAGCGA 58.656 55.556 0.00 0.00 35.48 4.93
128 129 1.208614 GCAAGCAAACAGGAGCGAG 59.791 57.895 0.00 0.00 35.48 5.03
129 130 1.871772 CAAGCAAACAGGAGCGAGG 59.128 57.895 0.00 0.00 35.48 4.63
130 131 0.886490 CAAGCAAACAGGAGCGAGGT 60.886 55.000 0.00 0.00 35.48 3.85
131 132 0.886490 AAGCAAACAGGAGCGAGGTG 60.886 55.000 0.00 0.00 35.48 4.00
132 133 2.970974 GCAAACAGGAGCGAGGTGC 61.971 63.158 0.00 0.00 46.98 5.01
142 143 3.114616 CGAGGTGCGAGCCACTTG 61.115 66.667 0.00 0.00 44.08 3.16
143 144 2.343758 GAGGTGCGAGCCACTTGA 59.656 61.111 0.00 0.00 44.08 3.02
144 145 1.739562 GAGGTGCGAGCCACTTGAG 60.740 63.158 0.00 0.00 44.08 3.02
145 146 2.031163 GGTGCGAGCCACTTGAGT 59.969 61.111 0.00 0.00 44.08 3.41
146 147 1.185618 AGGTGCGAGCCACTTGAGTA 61.186 55.000 0.00 0.00 44.08 2.59
147 148 0.320421 GGTGCGAGCCACTTGAGTAA 60.320 55.000 0.00 0.00 44.08 2.24
148 149 1.508632 GTGCGAGCCACTTGAGTAAA 58.491 50.000 0.00 0.00 41.35 2.01
149 150 1.194772 GTGCGAGCCACTTGAGTAAAC 59.805 52.381 0.00 0.00 41.35 2.01
150 151 1.202592 TGCGAGCCACTTGAGTAAACA 60.203 47.619 0.00 0.00 0.00 2.83
151 152 1.461127 GCGAGCCACTTGAGTAAACAG 59.539 52.381 0.00 0.00 0.00 3.16
152 153 1.461127 CGAGCCACTTGAGTAAACAGC 59.539 52.381 0.00 0.00 0.00 4.40
153 154 2.494059 GAGCCACTTGAGTAAACAGCA 58.506 47.619 0.00 0.00 0.00 4.41
154 155 3.077359 GAGCCACTTGAGTAAACAGCAT 58.923 45.455 0.00 0.00 0.00 3.79
155 156 3.077359 AGCCACTTGAGTAAACAGCATC 58.923 45.455 0.00 0.00 0.00 3.91
156 157 2.813754 GCCACTTGAGTAAACAGCATCA 59.186 45.455 0.00 0.00 0.00 3.07
157 158 3.365364 GCCACTTGAGTAAACAGCATCAC 60.365 47.826 0.00 0.00 0.00 3.06
158 159 3.814842 CCACTTGAGTAAACAGCATCACA 59.185 43.478 0.00 0.00 0.00 3.58
159 160 4.083643 CCACTTGAGTAAACAGCATCACAG 60.084 45.833 0.00 0.00 0.00 3.66
160 161 4.067896 ACTTGAGTAAACAGCATCACAGG 58.932 43.478 0.00 0.00 0.00 4.00
161 162 4.202357 ACTTGAGTAAACAGCATCACAGGA 60.202 41.667 0.00 0.00 0.00 3.86
162 163 4.350368 TGAGTAAACAGCATCACAGGAA 57.650 40.909 0.00 0.00 0.00 3.36
163 164 4.065088 TGAGTAAACAGCATCACAGGAAC 58.935 43.478 0.00 0.00 0.00 3.62
164 165 3.412386 AGTAAACAGCATCACAGGAACC 58.588 45.455 0.00 0.00 0.00 3.62
165 166 1.620822 AAACAGCATCACAGGAACCC 58.379 50.000 0.00 0.00 0.00 4.11
166 167 0.478072 AACAGCATCACAGGAACCCA 59.522 50.000 0.00 0.00 0.00 4.51
167 168 0.478072 ACAGCATCACAGGAACCCAA 59.522 50.000 0.00 0.00 0.00 4.12
168 169 1.076024 ACAGCATCACAGGAACCCAAT 59.924 47.619 0.00 0.00 0.00 3.16
169 170 1.475280 CAGCATCACAGGAACCCAATG 59.525 52.381 0.00 0.00 0.00 2.82
170 171 0.174162 GCATCACAGGAACCCAATGC 59.826 55.000 0.00 0.00 33.53 3.56
171 172 1.548081 CATCACAGGAACCCAATGCA 58.452 50.000 0.00 0.00 0.00 3.96
172 173 1.203052 CATCACAGGAACCCAATGCAC 59.797 52.381 0.00 0.00 0.00 4.57
173 174 0.184692 TCACAGGAACCCAATGCACA 59.815 50.000 0.00 0.00 0.00 4.57
174 175 1.039068 CACAGGAACCCAATGCACAA 58.961 50.000 0.00 0.00 0.00 3.33
175 176 1.000060 CACAGGAACCCAATGCACAAG 60.000 52.381 0.00 0.00 0.00 3.16
176 177 0.604578 CAGGAACCCAATGCACAAGG 59.395 55.000 0.00 0.00 0.00 3.61
177 178 0.188342 AGGAACCCAATGCACAAGGT 59.812 50.000 0.00 0.00 0.00 3.50
178 179 1.427368 AGGAACCCAATGCACAAGGTA 59.573 47.619 3.94 0.00 30.63 3.08
179 180 2.158385 AGGAACCCAATGCACAAGGTAA 60.158 45.455 3.94 0.00 30.63 2.85
180 181 2.630580 GGAACCCAATGCACAAGGTAAA 59.369 45.455 3.94 0.00 30.63 2.01
181 182 3.260632 GGAACCCAATGCACAAGGTAAAT 59.739 43.478 3.94 0.00 30.63 1.40
182 183 3.959535 ACCCAATGCACAAGGTAAATG 57.040 42.857 1.62 0.00 0.00 2.32
183 184 2.028203 ACCCAATGCACAAGGTAAATGC 60.028 45.455 1.62 0.00 39.88 3.56
188 189 3.921119 TGCACAAGGTAAATGCAAGAG 57.079 42.857 0.00 0.00 45.96 2.85
189 190 2.557924 TGCACAAGGTAAATGCAAGAGG 59.442 45.455 0.00 0.00 45.96 3.69
190 191 2.672195 GCACAAGGTAAATGCAAGAGGC 60.672 50.000 0.00 0.00 45.13 4.70
191 192 2.094545 CACAAGGTAAATGCAAGAGGCC 60.095 50.000 0.00 0.00 43.89 5.19
192 193 1.478105 CAAGGTAAATGCAAGAGGCCC 59.522 52.381 0.00 0.00 43.89 5.80
193 194 0.033109 AGGTAAATGCAAGAGGCCCC 60.033 55.000 0.00 0.00 43.89 5.80
194 195 0.033109 GGTAAATGCAAGAGGCCCCT 60.033 55.000 0.00 0.00 43.89 4.79
195 196 1.106285 GTAAATGCAAGAGGCCCCTG 58.894 55.000 0.00 0.00 43.89 4.45
196 197 0.998928 TAAATGCAAGAGGCCCCTGA 59.001 50.000 0.00 0.00 43.89 3.86
197 198 0.324091 AAATGCAAGAGGCCCCTGAG 60.324 55.000 0.00 0.00 43.89 3.35
198 199 2.850828 AATGCAAGAGGCCCCTGAGC 62.851 60.000 0.00 1.29 43.89 4.26
210 211 1.301558 CCTGAGCCAGCATCGATCC 60.302 63.158 0.00 0.00 0.00 3.36
236 237 1.482593 AGAACTTACTGCCCCAGATCG 59.517 52.381 0.00 0.00 35.18 3.69
237 238 1.480954 GAACTTACTGCCCCAGATCGA 59.519 52.381 0.00 0.00 35.18 3.59
238 239 1.794714 ACTTACTGCCCCAGATCGAT 58.205 50.000 0.00 0.00 35.18 3.59
261 262 3.003689 CACCACCAAGACATCAACTCAAC 59.996 47.826 0.00 0.00 0.00 3.18
262 263 2.224079 CCACCAAGACATCAACTCAACG 59.776 50.000 0.00 0.00 0.00 4.10
263 264 3.130633 CACCAAGACATCAACTCAACGA 58.869 45.455 0.00 0.00 0.00 3.85
264 265 3.559655 CACCAAGACATCAACTCAACGAA 59.440 43.478 0.00 0.00 0.00 3.85
265 266 4.214119 CACCAAGACATCAACTCAACGAAT 59.786 41.667 0.00 0.00 0.00 3.34
266 267 4.452455 ACCAAGACATCAACTCAACGAATC 59.548 41.667 0.00 0.00 0.00 2.52
267 268 4.452114 CCAAGACATCAACTCAACGAATCA 59.548 41.667 0.00 0.00 0.00 2.57
268 269 5.049474 CCAAGACATCAACTCAACGAATCAA 60.049 40.000 0.00 0.00 0.00 2.57
269 270 5.597813 AGACATCAACTCAACGAATCAAC 57.402 39.130 0.00 0.00 0.00 3.18
274 275 4.627058 TCAACTCAACGAATCAACTGCTA 58.373 39.130 0.00 0.00 0.00 3.49
279 280 5.470098 ACTCAACGAATCAACTGCTATTTGT 59.530 36.000 0.00 0.00 32.25 2.83
287 288 7.850982 CGAATCAACTGCTATTTGTTACCATAC 59.149 37.037 0.00 0.00 0.00 2.39
288 289 6.995511 TCAACTGCTATTTGTTACCATACC 57.004 37.500 0.00 0.00 0.00 2.73
289 290 6.477253 TCAACTGCTATTTGTTACCATACCA 58.523 36.000 0.00 0.00 0.00 3.25
290 291 6.373216 TCAACTGCTATTTGTTACCATACCAC 59.627 38.462 0.00 0.00 0.00 4.16
291 292 6.062258 ACTGCTATTTGTTACCATACCACT 57.938 37.500 0.00 0.00 0.00 4.00
292 293 7.190335 ACTGCTATTTGTTACCATACCACTA 57.810 36.000 0.00 0.00 0.00 2.74
294 295 7.769044 ACTGCTATTTGTTACCATACCACTAAG 59.231 37.037 0.00 0.00 0.00 2.18
353 370 7.441017 TGGAAAAAGAATAAAATCTGGTGGTG 58.559 34.615 0.00 0.00 0.00 4.17
356 373 6.994421 AAAGAATAAAATCTGGTGGTGGTT 57.006 33.333 0.00 0.00 0.00 3.67
358 375 8.485578 AAAGAATAAAATCTGGTGGTGGTTTA 57.514 30.769 0.00 0.00 0.00 2.01
365 382 4.015872 TCTGGTGGTGGTTTATGTTCTC 57.984 45.455 0.00 0.00 0.00 2.87
382 399 4.453478 TGTTCTCACTGTTGCTTGATGATC 59.547 41.667 0.00 0.00 0.00 2.92
398 415 1.158007 GATCTCCTCCTCCTCCTCCT 58.842 60.000 0.00 0.00 0.00 3.69
399 416 1.075536 GATCTCCTCCTCCTCCTCCTC 59.924 61.905 0.00 0.00 0.00 3.71
400 417 0.996762 TCTCCTCCTCCTCCTCCTCC 60.997 65.000 0.00 0.00 0.00 4.30
409 426 2.037367 TCCTCCTCCACCTGGACG 59.963 66.667 0.00 0.00 39.78 4.79
418 435 0.671781 CCACCTGGACGAGCTTCTTG 60.672 60.000 0.00 0.00 37.39 3.02
497 514 0.915364 GGAGGGCAGAATCTTCCAGT 59.085 55.000 0.70 0.00 0.00 4.00
499 516 0.622665 AGGGCAGAATCTTCCAGTGG 59.377 55.000 1.40 1.40 0.00 4.00
524 541 2.902457 GCCCCGAAGTCCTTCCCAA 61.902 63.158 1.61 0.00 36.27 4.12
525 542 1.999346 CCCCGAAGTCCTTCCCAAT 59.001 57.895 1.61 0.00 36.27 3.16
526 543 0.107165 CCCCGAAGTCCTTCCCAATC 60.107 60.000 1.61 0.00 36.27 2.67
527 544 0.107165 CCCGAAGTCCTTCCCAATCC 60.107 60.000 1.61 0.00 36.27 3.01
528 545 0.107165 CCGAAGTCCTTCCCAATCCC 60.107 60.000 1.61 0.00 36.27 3.85
529 546 0.618458 CGAAGTCCTTCCCAATCCCA 59.382 55.000 1.61 0.00 36.27 4.37
530 547 1.407437 CGAAGTCCTTCCCAATCCCAG 60.407 57.143 1.61 0.00 36.27 4.45
531 548 0.332972 AAGTCCTTCCCAATCCCAGC 59.667 55.000 0.00 0.00 0.00 4.85
532 549 0.846427 AGTCCTTCCCAATCCCAGCA 60.846 55.000 0.00 0.00 0.00 4.41
533 550 0.394899 GTCCTTCCCAATCCCAGCAG 60.395 60.000 0.00 0.00 0.00 4.24
578 595 2.887568 CGGCGCTCCACTAAGCAG 60.888 66.667 7.64 0.00 42.62 4.24
579 596 3.198489 GGCGCTCCACTAAGCAGC 61.198 66.667 7.64 1.24 42.62 5.25
580 597 3.198489 GCGCTCCACTAAGCAGCC 61.198 66.667 0.00 0.00 42.62 4.85
581 598 2.887568 CGCTCCACTAAGCAGCCG 60.888 66.667 0.00 0.00 42.62 5.52
582 599 3.198489 GCTCCACTAAGCAGCCGC 61.198 66.667 0.00 0.00 42.05 6.53
645 663 1.596477 GCGGAATCAGGCAGGCTAG 60.596 63.158 0.00 0.00 0.00 3.42
646 664 1.596477 CGGAATCAGGCAGGCTAGC 60.596 63.158 6.04 6.04 0.00 3.42
647 665 1.835693 GGAATCAGGCAGGCTAGCT 59.164 57.895 15.72 0.00 34.17 3.32
648 666 1.051812 GGAATCAGGCAGGCTAGCTA 58.948 55.000 15.72 0.00 34.17 3.32
649 667 1.627834 GGAATCAGGCAGGCTAGCTAT 59.372 52.381 15.72 0.30 34.17 2.97
650 668 2.614987 GGAATCAGGCAGGCTAGCTATG 60.615 54.545 15.72 14.68 34.17 2.23
651 669 0.324285 ATCAGGCAGGCTAGCTATGC 59.676 55.000 27.10 27.10 39.25 3.14
684 702 0.592754 GGAAGAGCTCGAATCGGACG 60.593 60.000 8.37 0.00 0.00 4.79
725 743 2.015726 GGGGAGGAGGAGGAGGAGA 61.016 68.421 0.00 0.00 0.00 3.71
726 744 1.231928 GGGAGGAGGAGGAGGAGAC 59.768 68.421 0.00 0.00 0.00 3.36
727 745 1.152839 GGAGGAGGAGGAGGAGACG 60.153 68.421 0.00 0.00 0.00 4.18
732 750 0.476771 GAGGAGGAGGAGACGGAGAT 59.523 60.000 0.00 0.00 0.00 2.75
781 799 3.059982 CGGAGCAGGTGAGTTGGA 58.940 61.111 0.00 0.00 0.00 3.53
782 800 1.374758 CGGAGCAGGTGAGTTGGAC 60.375 63.158 0.00 0.00 0.00 4.02
783 801 1.374758 GGAGCAGGTGAGTTGGACG 60.375 63.158 0.00 0.00 0.00 4.79
784 802 1.374758 GAGCAGGTGAGTTGGACGG 60.375 63.158 0.00 0.00 0.00 4.79
785 803 3.050275 GCAGGTGAGTTGGACGGC 61.050 66.667 0.00 0.00 0.00 5.68
786 804 2.425592 CAGGTGAGTTGGACGGCA 59.574 61.111 0.00 0.00 0.00 5.69
787 805 1.669115 CAGGTGAGTTGGACGGCAG 60.669 63.158 0.00 0.00 0.00 4.85
788 806 3.050275 GGTGAGTTGGACGGCAGC 61.050 66.667 0.00 0.00 0.00 5.25
789 807 3.414700 GTGAGTTGGACGGCAGCG 61.415 66.667 0.00 0.00 0.00 5.18
790 808 3.611674 TGAGTTGGACGGCAGCGA 61.612 61.111 0.00 0.00 0.00 4.93
791 809 2.811317 GAGTTGGACGGCAGCGAG 60.811 66.667 0.00 0.00 0.00 5.03
844 862 4.710167 TCTCGAGTCGTGGGCCGA 62.710 66.667 13.13 0.00 45.00 5.54
911 936 8.264632 CGCCGTGTCTATTTACTTTACTTTATC 58.735 37.037 0.00 0.00 0.00 1.75
1105 1147 3.066233 GCGGAAGGGGAGACTCGTC 62.066 68.421 0.00 0.00 38.77 4.20
1115 1157 3.507009 GACTCGTCCCCTCGTCGG 61.507 72.222 0.00 0.00 0.00 4.79
1333 1396 1.153289 CCTGAGCCATTCGACAGGG 60.153 63.158 9.14 1.21 44.04 4.45
1366 1429 3.153919 TGGAACAGGTAACAAGGCATTC 58.846 45.455 0.00 0.00 41.41 2.67
1633 1766 8.424133 TGTATCTATCTATGTGCACACTGATTT 58.576 33.333 29.27 20.41 0.00 2.17
1641 1804 4.880759 TGTGCACACTGATTTAAAATGGG 58.119 39.130 17.42 0.00 0.00 4.00
1643 1806 5.163513 GTGCACACTGATTTAAAATGGGAG 58.836 41.667 13.17 0.00 0.00 4.30
1670 1833 1.439644 CACAACCAAACAACCCCGG 59.560 57.895 0.00 0.00 0.00 5.73
1718 1886 1.273327 CCAAAATCTCAAGCGGCCTTT 59.727 47.619 0.00 0.00 0.00 3.11
1723 1891 1.153353 TCTCAAGCGGCCTTTAAACG 58.847 50.000 0.00 0.00 0.00 3.60
1927 2102 7.383843 GCTTTTGTTTTACCTTGCTTATTGCTA 59.616 33.333 0.00 0.00 43.37 3.49
2109 2300 2.626149 GCCCCCTAGACCAACTCTCTTA 60.626 54.545 0.00 0.00 0.00 2.10
2151 2342 5.774498 AAGATGGTTTTGAAGGAGTTGTC 57.226 39.130 0.00 0.00 0.00 3.18
2446 2656 7.283625 TGAGGTACTTGCAATGTTTTTACAT 57.716 32.000 0.00 0.00 41.55 2.29
2542 2753 1.726791 GTGCACAAGGTGACTGATACG 59.273 52.381 13.17 0.00 42.68 3.06
2629 2855 2.823544 TGGGACAGAGGGGGTACTA 58.176 57.895 0.00 0.00 0.00 1.82
2706 2942 4.026052 AGGCTCCTGGTTTTTATTCCATG 58.974 43.478 0.00 0.00 33.01 3.66
2820 3188 4.765273 TCTATGCTGATTCCGCTTTGTTA 58.235 39.130 1.71 0.00 0.00 2.41
2844 3212 6.816134 ATTTCCTTGCTTGTGTTTGTTTTT 57.184 29.167 0.00 0.00 0.00 1.94
2847 3215 4.688413 TCCTTGCTTGTGTTTGTTTTTCAC 59.312 37.500 0.00 0.00 0.00 3.18
2865 3236 2.028112 TCACACAGATGAGCCAGTTACC 60.028 50.000 0.00 0.00 0.00 2.85
3103 3485 1.636003 GAGGTTCCTTCTGTGGGGAAT 59.364 52.381 0.00 0.00 42.57 3.01
3187 3573 2.252346 GCTGCATCCATCGCCAGAG 61.252 63.158 0.00 0.00 0.00 3.35
3361 3759 8.768957 ATGCTATGCTATGTAGTATTGTGAAG 57.231 34.615 0.00 0.00 31.09 3.02
3379 3777 1.153025 GCAGATGATGGCTCTGGCA 60.153 57.895 3.97 0.00 43.52 4.92
3433 3839 0.944386 AGCAACGCTGTGGTTAACTG 59.056 50.000 5.42 0.00 37.57 3.16
3465 3871 3.063997 GCAACTCAACTTCATCATACCCG 59.936 47.826 0.00 0.00 0.00 5.28
3470 3876 4.503910 TCAACTTCATCATACCCGTCTTG 58.496 43.478 0.00 0.00 0.00 3.02
3792 4223 8.408043 TGCATGATCAGGTAAATTTAATAGGG 57.592 34.615 9.42 0.00 0.00 3.53
3800 4231 7.064229 CAGGTAAATTTAATAGGGTGGCCTTA 58.936 38.462 3.32 0.00 0.00 2.69
3969 4400 6.928979 TCGTGGTTCACTTCTTTTTATTCA 57.071 33.333 0.00 0.00 31.34 2.57
4005 4436 4.525996 TGTACTGAATGCCATGCTACATT 58.474 39.130 6.56 6.56 39.16 2.71
4013 4444 2.094675 GCCATGCTACATTCCTTGTGT 58.905 47.619 0.00 0.00 39.48 3.72
4021 4452 1.143684 ACATTCCTTGTGTGAGCACCT 59.856 47.619 0.00 0.00 44.65 4.00
4106 4537 6.183360 CCTCCGTTCCTTTTTATAAGTCGTTC 60.183 42.308 0.00 0.00 0.00 3.95
4122 4553 5.574082 AGTCGTTCTAGACAGATGATTTCG 58.426 41.667 0.00 0.00 43.24 3.46
4127 4558 4.921547 TCTAGACAGATGATTTCGAACCG 58.078 43.478 0.00 0.00 0.00 4.44
4138 4569 0.179040 TTCGAACCGTTTTGGGAGCT 60.179 50.000 0.00 0.00 44.64 4.09
4139 4570 0.882927 TCGAACCGTTTTGGGAGCTG 60.883 55.000 0.00 0.00 44.64 4.24
4140 4571 1.164041 CGAACCGTTTTGGGAGCTGT 61.164 55.000 0.00 0.00 44.64 4.40
4141 4572 0.591659 GAACCGTTTTGGGAGCTGTC 59.408 55.000 0.00 0.00 44.64 3.51
4142 4573 0.182775 AACCGTTTTGGGAGCTGTCT 59.817 50.000 0.00 0.00 44.64 3.41
4143 4574 0.535102 ACCGTTTTGGGAGCTGTCTG 60.535 55.000 0.00 0.00 44.64 3.51
4144 4575 0.250295 CCGTTTTGGGAGCTGTCTGA 60.250 55.000 0.00 0.00 0.00 3.27
4145 4576 1.593196 CGTTTTGGGAGCTGTCTGAA 58.407 50.000 0.00 0.00 0.00 3.02
4146 4577 1.264288 CGTTTTGGGAGCTGTCTGAAC 59.736 52.381 0.00 0.00 0.00 3.18
4147 4578 1.609072 GTTTTGGGAGCTGTCTGAACC 59.391 52.381 0.00 0.00 0.00 3.62
4148 4579 0.843309 TTTGGGAGCTGTCTGAACCA 59.157 50.000 0.00 0.00 0.00 3.67
4149 4580 1.067295 TTGGGAGCTGTCTGAACCAT 58.933 50.000 0.00 0.00 0.00 3.55
4150 4581 0.615331 TGGGAGCTGTCTGAACCATC 59.385 55.000 0.00 0.00 0.00 3.51
4151 4582 0.908198 GGGAGCTGTCTGAACCATCT 59.092 55.000 0.00 0.00 0.00 2.90
4152 4583 2.111384 GGGAGCTGTCTGAACCATCTA 58.889 52.381 0.00 0.00 0.00 1.98
4153 4584 2.159028 GGGAGCTGTCTGAACCATCTAC 60.159 54.545 0.00 0.00 0.00 2.59
4154 4585 2.497675 GGAGCTGTCTGAACCATCTACA 59.502 50.000 0.00 0.00 0.00 2.74
4155 4586 3.055819 GGAGCTGTCTGAACCATCTACAA 60.056 47.826 0.00 0.00 0.00 2.41
4156 4587 3.929610 GAGCTGTCTGAACCATCTACAAC 59.070 47.826 0.00 0.00 0.00 3.32
4157 4588 2.668457 GCTGTCTGAACCATCTACAACG 59.332 50.000 0.00 0.00 0.00 4.10
4158 4589 3.861131 GCTGTCTGAACCATCTACAACGT 60.861 47.826 0.00 0.00 0.00 3.99
4159 4590 3.909430 TGTCTGAACCATCTACAACGTC 58.091 45.455 0.00 0.00 0.00 4.34
4160 4591 3.572682 TGTCTGAACCATCTACAACGTCT 59.427 43.478 0.00 0.00 0.00 4.18
4161 4592 4.038763 TGTCTGAACCATCTACAACGTCTT 59.961 41.667 0.00 0.00 0.00 3.01
4162 4593 5.242171 TGTCTGAACCATCTACAACGTCTTA 59.758 40.000 0.00 0.00 0.00 2.10
4163 4594 6.071560 TGTCTGAACCATCTACAACGTCTTAT 60.072 38.462 0.00 0.00 0.00 1.73
4164 4595 7.121611 TGTCTGAACCATCTACAACGTCTTATA 59.878 37.037 0.00 0.00 0.00 0.98
4165 4596 7.644551 GTCTGAACCATCTACAACGTCTTATAG 59.355 40.741 0.00 0.00 0.00 1.31
4166 4597 7.555195 TCTGAACCATCTACAACGTCTTATAGA 59.445 37.037 0.00 0.00 0.00 1.98
4167 4598 8.234136 TGAACCATCTACAACGTCTTATAGAT 57.766 34.615 0.00 0.00 35.26 1.98
4168 4599 8.135529 TGAACCATCTACAACGTCTTATAGATG 58.864 37.037 20.58 20.58 45.59 2.90
4169 4600 7.584122 ACCATCTACAACGTCTTATAGATGT 57.416 36.000 23.06 11.78 45.78 3.06
4170 4601 7.426410 ACCATCTACAACGTCTTATAGATGTG 58.574 38.462 23.06 19.09 43.24 3.21
4171 4602 7.284716 ACCATCTACAACGTCTTATAGATGTGA 59.715 37.037 23.06 10.19 43.24 3.58
4172 4603 8.135529 CCATCTACAACGTCTTATAGATGTGAA 58.864 37.037 23.06 5.19 43.24 3.18
4173 4604 8.959058 CATCTACAACGTCTTATAGATGTGAAC 58.041 37.037 19.88 0.00 43.24 3.18
4174 4605 8.047413 TCTACAACGTCTTATAGATGTGAACA 57.953 34.615 2.54 0.00 43.24 3.18
4175 4606 8.517056 TCTACAACGTCTTATAGATGTGAACAA 58.483 33.333 2.54 0.00 43.24 2.83
4176 4607 7.956420 ACAACGTCTTATAGATGTGAACAAA 57.044 32.000 2.54 0.00 43.24 2.83
4177 4608 8.018677 ACAACGTCTTATAGATGTGAACAAAG 57.981 34.615 2.54 0.00 43.24 2.77
4178 4609 7.117812 ACAACGTCTTATAGATGTGAACAAAGG 59.882 37.037 2.54 0.00 43.24 3.11
4179 4610 6.106673 ACGTCTTATAGATGTGAACAAAGGG 58.893 40.000 0.95 0.00 42.49 3.95
4180 4611 6.070995 ACGTCTTATAGATGTGAACAAAGGGA 60.071 38.462 0.95 0.00 42.49 4.20
4181 4612 6.477033 CGTCTTATAGATGTGAACAAAGGGAG 59.523 42.308 0.00 0.00 0.00 4.30
4182 4613 7.331791 GTCTTATAGATGTGAACAAAGGGAGT 58.668 38.462 0.00 0.00 0.00 3.85
4183 4614 8.475639 GTCTTATAGATGTGAACAAAGGGAGTA 58.524 37.037 0.00 0.00 0.00 2.59
4184 4615 9.042450 TCTTATAGATGTGAACAAAGGGAGTAA 57.958 33.333 0.00 0.00 0.00 2.24
4185 4616 9.667107 CTTATAGATGTGAACAAAGGGAGTAAA 57.333 33.333 0.00 0.00 0.00 2.01
4189 4620 8.934023 AGATGTGAACAAAGGGAGTAAAATAA 57.066 30.769 0.00 0.00 0.00 1.40
4190 4621 9.362151 AGATGTGAACAAAGGGAGTAAAATAAA 57.638 29.630 0.00 0.00 0.00 1.40
4191 4622 9.974980 GATGTGAACAAAGGGAGTAAAATAAAA 57.025 29.630 0.00 0.00 0.00 1.52
4192 4623 9.758651 ATGTGAACAAAGGGAGTAAAATAAAAC 57.241 29.630 0.00 0.00 0.00 2.43
4193 4624 7.916450 TGTGAACAAAGGGAGTAAAATAAAACG 59.084 33.333 0.00 0.00 0.00 3.60
4194 4625 6.919115 TGAACAAAGGGAGTAAAATAAAACGC 59.081 34.615 0.00 0.00 0.00 4.84
4195 4626 6.644248 ACAAAGGGAGTAAAATAAAACGCT 57.356 33.333 0.00 0.00 0.00 5.07
4196 4627 6.443792 ACAAAGGGAGTAAAATAAAACGCTG 58.556 36.000 0.00 0.00 0.00 5.18
4197 4628 5.638596 AAGGGAGTAAAATAAAACGCTGG 57.361 39.130 0.00 0.00 0.00 4.85
4198 4629 4.659115 AGGGAGTAAAATAAAACGCTGGT 58.341 39.130 0.00 0.00 0.00 4.00
4199 4630 5.807909 AGGGAGTAAAATAAAACGCTGGTA 58.192 37.500 0.00 0.00 0.00 3.25
4200 4631 6.420638 AGGGAGTAAAATAAAACGCTGGTAT 58.579 36.000 0.00 0.00 0.00 2.73
4201 4632 6.317893 AGGGAGTAAAATAAAACGCTGGTATG 59.682 38.462 0.00 0.00 0.00 2.39
4202 4633 5.969435 GGAGTAAAATAAAACGCTGGTATGC 59.031 40.000 0.00 0.00 0.00 3.14
4203 4634 6.403855 GGAGTAAAATAAAACGCTGGTATGCA 60.404 38.462 0.00 0.00 0.00 3.96
4204 4635 7.095695 AGTAAAATAAAACGCTGGTATGCAT 57.904 32.000 3.79 3.79 0.00 3.96
4205 4636 6.972328 AGTAAAATAAAACGCTGGTATGCATG 59.028 34.615 10.16 0.00 0.00 4.06
4206 4637 4.981806 AATAAAACGCTGGTATGCATGT 57.018 36.364 10.16 0.00 0.00 3.21
4207 4638 4.981806 ATAAAACGCTGGTATGCATGTT 57.018 36.364 10.16 0.21 0.00 2.71
4208 4639 2.919666 AAACGCTGGTATGCATGTTC 57.080 45.000 10.16 0.00 0.00 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.194796 CTAAGCCATTTAGCAGCAAGTAAA 57.805 37.500 0.00 0.00 32.89 2.01
1 2 5.818136 CTAAGCCATTTAGCAGCAAGTAA 57.182 39.130 0.00 0.00 32.89 2.24
18 19 2.939022 CTATTGCGGCCGCTAAGC 59.061 61.111 45.79 21.90 42.51 3.09
19 20 2.607892 GGCTATTGCGGCCGCTAAG 61.608 63.158 45.79 36.87 40.19 2.18
20 21 2.590575 GGCTATTGCGGCCGCTAA 60.591 61.111 45.79 36.23 40.19 3.09
26 27 1.079405 TATAGCGGGCTATTGCGGC 60.079 57.895 17.49 5.85 39.65 6.53
27 28 1.084370 GCTATAGCGGGCTATTGCGG 61.084 60.000 23.85 12.09 43.53 5.69
28 29 2.373938 GCTATAGCGGGCTATTGCG 58.626 57.895 23.85 12.83 43.53 4.85
39 40 1.230324 CTTTTCCCAGCCGCTATAGC 58.770 55.000 15.09 15.09 37.78 2.97
40 41 1.202698 AGCTTTTCCCAGCCGCTATAG 60.203 52.381 0.00 0.00 41.12 1.31
41 42 0.837272 AGCTTTTCCCAGCCGCTATA 59.163 50.000 0.00 0.00 41.12 1.31
42 43 0.837272 TAGCTTTTCCCAGCCGCTAT 59.163 50.000 0.00 0.00 41.12 2.97
43 44 0.107848 GTAGCTTTTCCCAGCCGCTA 60.108 55.000 0.00 0.00 41.12 4.26
44 45 1.377333 GTAGCTTTTCCCAGCCGCT 60.377 57.895 0.00 0.00 41.12 5.52
45 46 1.377333 AGTAGCTTTTCCCAGCCGC 60.377 57.895 0.00 0.00 41.12 6.53
46 47 1.026718 CCAGTAGCTTTTCCCAGCCG 61.027 60.000 0.00 0.00 41.12 5.52
47 48 0.681243 CCCAGTAGCTTTTCCCAGCC 60.681 60.000 0.00 0.00 41.12 4.85
48 49 0.328258 TCCCAGTAGCTTTTCCCAGC 59.672 55.000 0.00 0.00 40.44 4.85
49 50 2.879103 TTCCCAGTAGCTTTTCCCAG 57.121 50.000 0.00 0.00 0.00 4.45
50 51 3.075283 TGATTTCCCAGTAGCTTTTCCCA 59.925 43.478 0.00 0.00 0.00 4.37
51 52 3.697166 TGATTTCCCAGTAGCTTTTCCC 58.303 45.455 0.00 0.00 0.00 3.97
52 53 5.722021 TTTGATTTCCCAGTAGCTTTTCC 57.278 39.130 0.00 0.00 0.00 3.13
53 54 6.091305 GCAATTTGATTTCCCAGTAGCTTTTC 59.909 38.462 0.00 0.00 0.00 2.29
54 55 5.934043 GCAATTTGATTTCCCAGTAGCTTTT 59.066 36.000 0.00 0.00 0.00 2.27
55 56 5.482006 GCAATTTGATTTCCCAGTAGCTTT 58.518 37.500 0.00 0.00 0.00 3.51
56 57 4.081476 GGCAATTTGATTTCCCAGTAGCTT 60.081 41.667 0.00 0.00 0.00 3.74
57 58 3.448660 GGCAATTTGATTTCCCAGTAGCT 59.551 43.478 0.00 0.00 0.00 3.32
58 59 3.448660 AGGCAATTTGATTTCCCAGTAGC 59.551 43.478 0.00 0.00 0.00 3.58
59 60 4.678840 GCAGGCAATTTGATTTCCCAGTAG 60.679 45.833 0.00 0.00 0.00 2.57
60 61 3.195396 GCAGGCAATTTGATTTCCCAGTA 59.805 43.478 0.00 0.00 0.00 2.74
61 62 2.027837 GCAGGCAATTTGATTTCCCAGT 60.028 45.455 0.00 0.00 0.00 4.00
62 63 2.624636 GCAGGCAATTTGATTTCCCAG 58.375 47.619 0.00 0.00 0.00 4.45
63 64 1.067000 CGCAGGCAATTTGATTTCCCA 60.067 47.619 0.00 0.00 0.00 4.37
64 65 1.204467 TCGCAGGCAATTTGATTTCCC 59.796 47.619 0.00 0.00 0.00 3.97
65 66 2.652941 TCGCAGGCAATTTGATTTCC 57.347 45.000 0.00 0.00 0.00 3.13
66 67 5.535043 AAAATCGCAGGCAATTTGATTTC 57.465 34.783 0.00 0.00 38.06 2.17
67 68 7.297391 GTTTAAAATCGCAGGCAATTTGATTT 58.703 30.769 0.00 0.00 40.05 2.17
68 69 6.128309 GGTTTAAAATCGCAGGCAATTTGATT 60.128 34.615 0.00 0.00 0.00 2.57
69 70 5.351189 GGTTTAAAATCGCAGGCAATTTGAT 59.649 36.000 0.00 0.00 0.00 2.57
70 71 4.688413 GGTTTAAAATCGCAGGCAATTTGA 59.312 37.500 0.00 0.00 0.00 2.69
71 72 4.690280 AGGTTTAAAATCGCAGGCAATTTG 59.310 37.500 0.00 0.00 0.00 2.32
72 73 4.893608 AGGTTTAAAATCGCAGGCAATTT 58.106 34.783 0.00 0.00 0.00 1.82
73 74 4.535526 AGGTTTAAAATCGCAGGCAATT 57.464 36.364 0.00 0.00 0.00 2.32
74 75 4.244862 CAAGGTTTAAAATCGCAGGCAAT 58.755 39.130 0.00 0.00 0.00 3.56
75 76 3.648009 CAAGGTTTAAAATCGCAGGCAA 58.352 40.909 0.00 0.00 0.00 4.52
76 77 2.609244 GCAAGGTTTAAAATCGCAGGCA 60.609 45.455 0.00 0.00 0.00 4.75
77 78 1.992667 GCAAGGTTTAAAATCGCAGGC 59.007 47.619 0.00 0.00 0.00 4.85
78 79 3.575965 AGCAAGGTTTAAAATCGCAGG 57.424 42.857 0.00 0.00 0.00 4.85
79 80 3.121778 GCAAGCAAGGTTTAAAATCGCAG 59.878 43.478 0.00 0.00 0.00 5.18
80 81 3.056304 GCAAGCAAGGTTTAAAATCGCA 58.944 40.909 0.00 0.00 0.00 5.10
81 82 3.317150 AGCAAGCAAGGTTTAAAATCGC 58.683 40.909 0.00 0.00 0.00 4.58
82 83 4.545610 TGAGCAAGCAAGGTTTAAAATCG 58.454 39.130 0.00 0.00 0.00 3.34
101 102 4.029186 TTTGCTTGCGGCGCTGAG 62.029 61.111 33.26 28.16 45.43 3.35
102 103 4.326766 GTTTGCTTGCGGCGCTGA 62.327 61.111 33.26 19.91 45.43 4.26
103 104 4.627447 TGTTTGCTTGCGGCGCTG 62.627 61.111 33.26 24.76 45.43 5.18
104 105 4.332637 CTGTTTGCTTGCGGCGCT 62.333 61.111 33.26 0.00 45.43 5.92
106 107 3.599792 CTCCTGTTTGCTTGCGGCG 62.600 63.158 0.51 0.51 45.43 6.46
107 108 2.256461 CTCCTGTTTGCTTGCGGC 59.744 61.111 0.00 0.00 42.22 6.53
108 109 2.256461 GCTCCTGTTTGCTTGCGG 59.744 61.111 0.00 0.00 0.00 5.69
109 110 2.127118 CGCTCCTGTTTGCTTGCG 60.127 61.111 0.00 0.00 37.57 4.85
110 111 1.208614 CTCGCTCCTGTTTGCTTGC 59.791 57.895 0.00 0.00 0.00 4.01
111 112 0.886490 ACCTCGCTCCTGTTTGCTTG 60.886 55.000 0.00 0.00 0.00 4.01
112 113 0.886490 CACCTCGCTCCTGTTTGCTT 60.886 55.000 0.00 0.00 0.00 3.91
113 114 1.302033 CACCTCGCTCCTGTTTGCT 60.302 57.895 0.00 0.00 0.00 3.91
114 115 2.970974 GCACCTCGCTCCTGTTTGC 61.971 63.158 0.00 0.00 37.77 3.68
115 116 2.671177 CGCACCTCGCTCCTGTTTG 61.671 63.158 0.00 0.00 39.08 2.93
116 117 2.357517 CGCACCTCGCTCCTGTTT 60.358 61.111 0.00 0.00 39.08 2.83
117 118 3.288308 CTCGCACCTCGCTCCTGTT 62.288 63.158 0.00 0.00 39.08 3.16
118 119 3.753434 CTCGCACCTCGCTCCTGT 61.753 66.667 0.00 0.00 39.08 4.00
125 126 3.114616 CAAGTGGCTCGCACCTCG 61.115 66.667 0.00 0.00 40.15 4.63
126 127 1.739562 CTCAAGTGGCTCGCACCTC 60.740 63.158 0.00 0.00 0.00 3.85
127 128 1.185618 TACTCAAGTGGCTCGCACCT 61.186 55.000 0.00 0.00 0.00 4.00
128 129 0.320421 TTACTCAAGTGGCTCGCACC 60.320 55.000 0.00 0.00 0.00 5.01
129 130 1.194772 GTTTACTCAAGTGGCTCGCAC 59.805 52.381 0.00 0.00 0.00 5.34
130 131 1.202592 TGTTTACTCAAGTGGCTCGCA 60.203 47.619 0.00 0.00 0.00 5.10
131 132 1.461127 CTGTTTACTCAAGTGGCTCGC 59.539 52.381 0.00 0.00 0.00 5.03
132 133 1.461127 GCTGTTTACTCAAGTGGCTCG 59.539 52.381 0.00 0.00 0.00 5.03
133 134 2.494059 TGCTGTTTACTCAAGTGGCTC 58.506 47.619 0.00 0.00 0.00 4.70
134 135 2.638480 TGCTGTTTACTCAAGTGGCT 57.362 45.000 0.00 0.00 0.00 4.75
135 136 2.813754 TGATGCTGTTTACTCAAGTGGC 59.186 45.455 0.00 0.00 0.00 5.01
136 137 3.814842 TGTGATGCTGTTTACTCAAGTGG 59.185 43.478 0.00 0.00 0.00 4.00
137 138 4.083643 CCTGTGATGCTGTTTACTCAAGTG 60.084 45.833 0.00 0.00 0.00 3.16
138 139 4.067896 CCTGTGATGCTGTTTACTCAAGT 58.932 43.478 0.00 0.00 0.00 3.16
139 140 4.318332 TCCTGTGATGCTGTTTACTCAAG 58.682 43.478 0.00 0.00 0.00 3.02
140 141 4.350368 TCCTGTGATGCTGTTTACTCAA 57.650 40.909 0.00 0.00 0.00 3.02
141 142 4.065088 GTTCCTGTGATGCTGTTTACTCA 58.935 43.478 0.00 0.00 0.00 3.41
142 143 3.437049 GGTTCCTGTGATGCTGTTTACTC 59.563 47.826 0.00 0.00 0.00 2.59
143 144 3.412386 GGTTCCTGTGATGCTGTTTACT 58.588 45.455 0.00 0.00 0.00 2.24
144 145 2.488153 GGGTTCCTGTGATGCTGTTTAC 59.512 50.000 0.00 0.00 0.00 2.01
145 146 2.107378 TGGGTTCCTGTGATGCTGTTTA 59.893 45.455 0.00 0.00 0.00 2.01
146 147 1.133513 TGGGTTCCTGTGATGCTGTTT 60.134 47.619 0.00 0.00 0.00 2.83
147 148 0.478072 TGGGTTCCTGTGATGCTGTT 59.522 50.000 0.00 0.00 0.00 3.16
148 149 0.478072 TTGGGTTCCTGTGATGCTGT 59.522 50.000 0.00 0.00 0.00 4.40
149 150 1.475280 CATTGGGTTCCTGTGATGCTG 59.525 52.381 0.00 0.00 0.00 4.41
150 151 1.843368 CATTGGGTTCCTGTGATGCT 58.157 50.000 0.00 0.00 0.00 3.79
151 152 0.174162 GCATTGGGTTCCTGTGATGC 59.826 55.000 0.00 0.00 33.97 3.91
152 153 1.203052 GTGCATTGGGTTCCTGTGATG 59.797 52.381 0.00 0.00 0.00 3.07
153 154 1.203038 TGTGCATTGGGTTCCTGTGAT 60.203 47.619 0.00 0.00 0.00 3.06
154 155 0.184692 TGTGCATTGGGTTCCTGTGA 59.815 50.000 0.00 0.00 0.00 3.58
155 156 1.000060 CTTGTGCATTGGGTTCCTGTG 60.000 52.381 0.00 0.00 0.00 3.66
156 157 1.331214 CTTGTGCATTGGGTTCCTGT 58.669 50.000 0.00 0.00 0.00 4.00
157 158 0.604578 CCTTGTGCATTGGGTTCCTG 59.395 55.000 0.00 0.00 0.00 3.86
158 159 0.188342 ACCTTGTGCATTGGGTTCCT 59.812 50.000 0.00 0.00 0.00 3.36
159 160 1.917872 TACCTTGTGCATTGGGTTCC 58.082 50.000 11.57 0.00 33.74 3.62
160 161 4.244862 CATTTACCTTGTGCATTGGGTTC 58.755 43.478 11.57 0.00 33.74 3.62
161 162 3.556843 GCATTTACCTTGTGCATTGGGTT 60.557 43.478 11.57 0.00 38.68 4.11
162 163 2.028203 GCATTTACCTTGTGCATTGGGT 60.028 45.455 11.18 11.18 38.68 4.51
163 164 2.028294 TGCATTTACCTTGTGCATTGGG 60.028 45.455 0.00 0.00 43.30 4.12
164 165 3.316071 TGCATTTACCTTGTGCATTGG 57.684 42.857 0.00 0.00 43.30 3.16
165 166 4.558178 TCTTGCATTTACCTTGTGCATTG 58.442 39.130 0.00 0.00 46.90 2.82
166 167 4.322198 CCTCTTGCATTTACCTTGTGCATT 60.322 41.667 0.00 0.00 46.90 3.56
167 168 3.194116 CCTCTTGCATTTACCTTGTGCAT 59.806 43.478 0.00 0.00 46.90 3.96
168 169 2.557924 CCTCTTGCATTTACCTTGTGCA 59.442 45.455 0.00 0.00 46.15 4.57
169 170 2.672195 GCCTCTTGCATTTACCTTGTGC 60.672 50.000 0.00 0.00 40.77 4.57
170 171 2.094545 GGCCTCTTGCATTTACCTTGTG 60.095 50.000 0.00 0.00 43.89 3.33
171 172 2.171003 GGCCTCTTGCATTTACCTTGT 58.829 47.619 0.00 0.00 43.89 3.16
172 173 1.478105 GGGCCTCTTGCATTTACCTTG 59.522 52.381 0.84 0.00 43.89 3.61
173 174 1.619704 GGGGCCTCTTGCATTTACCTT 60.620 52.381 0.84 0.00 43.89 3.50
174 175 0.033109 GGGGCCTCTTGCATTTACCT 60.033 55.000 0.84 0.00 43.89 3.08
175 176 0.033109 AGGGGCCTCTTGCATTTACC 60.033 55.000 0.00 0.00 43.89 2.85
176 177 1.106285 CAGGGGCCTCTTGCATTTAC 58.894 55.000 0.00 0.00 43.89 2.01
177 178 0.998928 TCAGGGGCCTCTTGCATTTA 59.001 50.000 0.00 0.00 43.89 1.40
178 179 0.324091 CTCAGGGGCCTCTTGCATTT 60.324 55.000 0.00 0.00 43.89 2.32
179 180 1.305623 CTCAGGGGCCTCTTGCATT 59.694 57.895 0.00 0.00 43.89 3.56
180 181 3.004951 CTCAGGGGCCTCTTGCAT 58.995 61.111 0.00 0.00 43.89 3.96
181 182 4.039092 GCTCAGGGGCCTCTTGCA 62.039 66.667 19.49 0.00 43.89 4.08
190 191 2.728443 GATCGATGCTGGCTCAGGGG 62.728 65.000 0.54 0.00 31.21 4.79
191 192 1.301558 GATCGATGCTGGCTCAGGG 60.302 63.158 0.54 0.00 31.21 4.45
192 193 1.301558 GGATCGATGCTGGCTCAGG 60.302 63.158 9.99 0.00 31.21 3.86
193 194 0.035036 ATGGATCGATGCTGGCTCAG 59.965 55.000 18.23 0.00 34.12 3.35
194 195 0.034476 GATGGATCGATGCTGGCTCA 59.966 55.000 18.23 0.00 0.00 4.26
195 196 0.034476 TGATGGATCGATGCTGGCTC 59.966 55.000 18.23 9.75 0.00 4.70
196 197 0.250209 GTGATGGATCGATGCTGGCT 60.250 55.000 18.23 0.30 0.00 4.75
197 198 0.533531 TGTGATGGATCGATGCTGGC 60.534 55.000 18.23 7.73 0.00 4.85
198 199 1.069668 TCTGTGATGGATCGATGCTGG 59.930 52.381 18.23 2.49 0.00 4.85
199 200 2.521105 TCTGTGATGGATCGATGCTG 57.479 50.000 18.23 2.15 0.00 4.41
200 201 2.433604 AGTTCTGTGATGGATCGATGCT 59.566 45.455 18.23 3.60 0.00 3.79
201 202 2.831333 AGTTCTGTGATGGATCGATGC 58.169 47.619 10.37 10.37 0.00 3.91
202 203 5.461407 CAGTAAGTTCTGTGATGGATCGATG 59.539 44.000 0.54 0.00 0.00 3.84
203 204 5.595885 CAGTAAGTTCTGTGATGGATCGAT 58.404 41.667 0.00 0.00 0.00 3.59
204 205 4.678044 GCAGTAAGTTCTGTGATGGATCGA 60.678 45.833 0.00 0.00 37.70 3.59
210 211 2.290260 TGGGGCAGTAAGTTCTGTGATG 60.290 50.000 0.00 0.00 37.70 3.07
236 237 3.679389 AGTTGATGTCTTGGTGGTGATC 58.321 45.455 0.00 0.00 0.00 2.92
237 238 3.072915 TGAGTTGATGTCTTGGTGGTGAT 59.927 43.478 0.00 0.00 0.00 3.06
238 239 2.437651 TGAGTTGATGTCTTGGTGGTGA 59.562 45.455 0.00 0.00 0.00 4.02
279 280 5.304871 TGTGTGTGTCTTAGTGGTATGGTAA 59.695 40.000 0.00 0.00 0.00 2.85
287 288 4.314961 TGCTTATGTGTGTGTCTTAGTGG 58.685 43.478 0.00 0.00 0.00 4.00
288 289 4.389992 CCTGCTTATGTGTGTGTCTTAGTG 59.610 45.833 0.00 0.00 0.00 2.74
289 290 4.283467 TCCTGCTTATGTGTGTGTCTTAGT 59.717 41.667 0.00 0.00 0.00 2.24
290 291 4.820897 TCCTGCTTATGTGTGTGTCTTAG 58.179 43.478 0.00 0.00 0.00 2.18
291 292 4.882842 TCCTGCTTATGTGTGTGTCTTA 57.117 40.909 0.00 0.00 0.00 2.10
292 293 3.769739 TCCTGCTTATGTGTGTGTCTT 57.230 42.857 0.00 0.00 0.00 3.01
294 295 4.829064 TTTTCCTGCTTATGTGTGTGTC 57.171 40.909 0.00 0.00 0.00 3.67
320 337 9.428097 AGATTTTATTCTTTTTCCATGCAAGTC 57.572 29.630 0.00 0.00 0.00 3.01
353 370 5.008613 TCAAGCAACAGTGAGAACATAAACC 59.991 40.000 0.00 0.00 0.00 3.27
356 373 5.997129 TCATCAAGCAACAGTGAGAACATAA 59.003 36.000 0.00 0.00 0.00 1.90
358 375 4.392047 TCATCAAGCAACAGTGAGAACAT 58.608 39.130 0.00 0.00 0.00 2.71
365 382 3.607741 AGGAGATCATCAAGCAACAGTG 58.392 45.455 0.00 0.00 0.00 3.66
382 399 1.292941 TGGAGGAGGAGGAGGAGGAG 61.293 65.000 0.00 0.00 0.00 3.69
398 415 0.832135 AAGAAGCTCGTCCAGGTGGA 60.832 55.000 0.00 0.00 43.08 4.02
399 416 0.671781 CAAGAAGCTCGTCCAGGTGG 60.672 60.000 0.00 0.00 31.27 4.61
400 417 0.034059 ACAAGAAGCTCGTCCAGGTG 59.966 55.000 0.00 0.00 31.27 4.00
409 426 2.558313 GCGCACCACAAGAAGCTC 59.442 61.111 0.30 0.00 0.00 4.09
418 435 1.491563 CTTCTACAACGCGCACCAC 59.508 57.895 5.73 0.00 0.00 4.16
478 495 0.915364 ACTGGAAGATTCTGCCCTCC 59.085 55.000 8.31 1.86 37.43 4.30
482 499 1.457346 CACCACTGGAAGATTCTGCC 58.543 55.000 3.40 3.40 37.43 4.85
484 501 1.457346 GGCACCACTGGAAGATTCTG 58.543 55.000 0.71 0.00 37.43 3.02
487 504 1.675641 GCGGCACCACTGGAAGATT 60.676 57.895 0.71 0.00 37.43 2.40
515 532 1.574526 CCTGCTGGGATTGGGAAGGA 61.575 60.000 0.71 0.00 37.23 3.36
581 598 3.712881 GAGTGTGGTGGTTCGCGC 61.713 66.667 0.00 0.00 0.00 6.86
582 599 2.279851 TGAGTGTGGTGGTTCGCG 60.280 61.111 0.00 0.00 0.00 5.87
586 604 1.140312 ATCCAGTGAGTGTGGTGGTT 58.860 50.000 0.00 0.00 36.37 3.67
594 612 3.119602 CCTTGCATTTCATCCAGTGAGTG 60.120 47.826 0.00 0.00 38.29 3.51
645 663 2.895372 CGACCAACCCGGCATAGC 60.895 66.667 0.00 0.00 39.03 2.97
646 664 2.203015 CCGACCAACCCGGCATAG 60.203 66.667 0.00 0.00 40.54 2.23
725 743 0.325671 ACCACCATCTCCATCTCCGT 60.326 55.000 0.00 0.00 0.00 4.69
726 744 0.390860 GACCACCATCTCCATCTCCG 59.609 60.000 0.00 0.00 0.00 4.63
727 745 0.390860 CGACCACCATCTCCATCTCC 59.609 60.000 0.00 0.00 0.00 3.71
732 750 3.770040 CGCCGACCACCATCTCCA 61.770 66.667 0.00 0.00 0.00 3.86
762 780 3.114616 CAACTCACCTGCTCCGCG 61.115 66.667 0.00 0.00 0.00 6.46
763 781 2.743928 CCAACTCACCTGCTCCGC 60.744 66.667 0.00 0.00 0.00 5.54
764 782 1.374758 GTCCAACTCACCTGCTCCG 60.375 63.158 0.00 0.00 0.00 4.63
765 783 1.374758 CGTCCAACTCACCTGCTCC 60.375 63.158 0.00 0.00 0.00 4.70
769 787 1.669115 CTGCCGTCCAACTCACCTG 60.669 63.158 0.00 0.00 0.00 4.00
770 788 2.743718 CTGCCGTCCAACTCACCT 59.256 61.111 0.00 0.00 0.00 4.00
772 790 3.414700 CGCTGCCGTCCAACTCAC 61.415 66.667 0.00 0.00 0.00 3.51
773 791 3.573772 CTCGCTGCCGTCCAACTCA 62.574 63.158 0.00 0.00 35.54 3.41
821 839 4.813526 CACGACTCGAGACGGCGG 62.814 72.222 33.60 21.62 37.51 6.13
822 840 4.813526 CCACGACTCGAGACGGCG 62.814 72.222 33.60 25.13 37.51 6.46
844 862 2.825861 AATAAACACACGGACCGAGT 57.174 45.000 23.38 17.14 0.00 4.18
911 936 2.165641 TCGGCCACACACAGAGTAATAG 59.834 50.000 2.24 0.00 0.00 1.73
1061 1091 1.527433 GGCAGAAACCTTGGCTGACC 61.527 60.000 0.00 0.00 38.03 4.02
1105 1147 4.148825 CTTGGCTCCGACGAGGGG 62.149 72.222 0.00 0.00 45.86 4.79
1115 1157 2.440980 GCCCCATCACCTTGGCTC 60.441 66.667 0.00 0.00 40.77 4.70
1333 1396 1.597663 CCTGTTCCAGTTGTGTTCGAC 59.402 52.381 0.00 0.00 0.00 4.20
1361 1424 6.118852 AGGGAGATCTGAAGTTTAAGAATGC 58.881 40.000 0.00 0.00 0.00 3.56
1366 1429 6.609616 AGGAGTAGGGAGATCTGAAGTTTAAG 59.390 42.308 0.00 0.00 0.00 1.85
1558 1629 2.360801 GAGCAAAGCGAGAGGAGTAGAT 59.639 50.000 0.00 0.00 0.00 1.98
1641 1804 3.383185 TGTTTGGTTGTGGGACAAATCTC 59.617 43.478 0.00 0.00 44.16 2.75
1643 1806 3.810310 TGTTTGGTTGTGGGACAAATC 57.190 42.857 0.00 0.00 44.16 2.17
1670 1833 8.043710 AGAGTTATTAATGACTGCATATAGGGC 58.956 37.037 16.87 0.00 33.44 5.19
1718 1886 6.745450 GGAGCGATCAAAATTGAAATCGTTTA 59.255 34.615 16.16 0.00 40.15 2.01
1723 1891 6.909357 CAGTAGGAGCGATCAAAATTGAAATC 59.091 38.462 1.84 0.00 41.13 2.17
1927 2102 8.036575 CCATGGAAAATGAAATGAGTACATGTT 58.963 33.333 5.56 0.00 36.79 2.71
2368 2575 4.862018 ACAAGTTTCAAAACATTGGTCACG 59.138 37.500 8.23 0.00 41.30 4.35
2465 2676 8.435982 ACAAGTTTATCCCAATTGAAAAATCCA 58.564 29.630 7.12 0.00 0.00 3.41
2471 2682 6.739331 ACCACAAGTTTATCCCAATTGAAA 57.261 33.333 7.12 0.00 0.00 2.69
2528 2739 3.022406 GGGAGTACGTATCAGTCACCTT 58.978 50.000 0.00 0.00 0.00 3.50
2542 2753 2.056815 GGTGGGACGGAGGGAGTAC 61.057 68.421 0.00 0.00 0.00 2.73
2600 2826 6.570393 ACCCCCTCTGTCCCATAATATAAAAT 59.430 38.462 0.00 0.00 0.00 1.82
2602 2828 5.491992 ACCCCCTCTGTCCCATAATATAAA 58.508 41.667 0.00 0.00 0.00 1.40
2610 2836 1.220750 CTAGTACCCCCTCTGTCCCAT 59.779 57.143 0.00 0.00 0.00 4.00
2617 2843 3.538980 TCCCATAAACTAGTACCCCCTCT 59.461 47.826 0.00 0.00 0.00 3.69
2706 2942 7.011202 GCAAAGTAATAACCTAGCTAGTGGAAC 59.989 40.741 19.31 9.42 0.00 3.62
2750 3114 3.836562 ACTAACAAGGTAGGTCCGTGAAT 59.163 43.478 6.79 0.00 46.14 2.57
2751 3115 3.006110 CACTAACAAGGTAGGTCCGTGAA 59.994 47.826 6.79 0.00 46.14 3.18
2752 3116 2.559668 CACTAACAAGGTAGGTCCGTGA 59.440 50.000 6.79 0.00 46.14 4.35
2754 3118 1.274447 GCACTAACAAGGTAGGTCCGT 59.726 52.381 0.00 0.00 41.99 4.69
2755 3119 1.405121 GGCACTAACAAGGTAGGTCCG 60.405 57.143 0.00 0.00 41.99 4.79
2820 3188 6.816134 AAAACAAACACAAGCAAGGAAATT 57.184 29.167 0.00 0.00 0.00 1.82
2844 3212 2.028112 GGTAACTGGCTCATCTGTGTGA 60.028 50.000 0.00 0.00 0.00 3.58
2847 3215 1.204704 TCGGTAACTGGCTCATCTGTG 59.795 52.381 0.00 0.00 0.00 3.66
2865 3236 2.604614 GCCAAACAAACTGTAGGCTTCG 60.605 50.000 13.14 0.00 43.83 3.79
3103 3485 1.614996 AATGTCCACACGGAAATGCA 58.385 45.000 0.00 0.00 45.20 3.96
3187 3573 6.791775 GTCATCATTTTCCAAACGCAAATTTC 59.208 34.615 0.00 0.00 0.00 2.17
3361 3759 0.537600 ATGCCAGAGCCATCATCTGC 60.538 55.000 0.00 0.00 42.36 4.26
3465 3871 7.441017 ACATGAGCTATAAGAAGATCCAAGAC 58.559 38.462 0.00 0.00 30.73 3.01
3470 3876 8.802267 AGTAAGACATGAGCTATAAGAAGATCC 58.198 37.037 0.00 0.00 30.73 3.36
3800 4231 3.953612 TCAGTTTGTCAAATCTGCCACTT 59.046 39.130 16.63 0.00 0.00 3.16
4021 4452 3.475575 TGTTGTGTAAGATGAGCAGCAA 58.524 40.909 0.00 0.00 0.00 3.91
4078 4509 5.742063 ACTTATAAAAAGGAACGGAGGGAG 58.258 41.667 0.00 0.00 0.00 4.30
4085 4516 8.582096 GTCTAGAACGACTTATAAAAAGGAACG 58.418 37.037 0.00 0.00 0.00 3.95
4106 4537 4.673441 ACGGTTCGAAATCATCTGTCTAG 58.327 43.478 0.00 0.00 0.00 2.43
4121 4552 1.164041 ACAGCTCCCAAAACGGTTCG 61.164 55.000 0.00 0.00 0.00 3.95
4122 4553 0.591659 GACAGCTCCCAAAACGGTTC 59.408 55.000 0.00 0.00 0.00 3.62
4127 4558 1.609072 GGTTCAGACAGCTCCCAAAAC 59.391 52.381 0.00 0.00 0.00 2.43
4138 4569 3.572682 AGACGTTGTAGATGGTTCAGACA 59.427 43.478 0.00 0.00 0.00 3.41
4139 4570 4.175787 AGACGTTGTAGATGGTTCAGAC 57.824 45.455 0.00 0.00 0.00 3.51
4140 4571 4.866508 AAGACGTTGTAGATGGTTCAGA 57.133 40.909 0.00 0.00 0.00 3.27
4141 4572 7.704271 TCTATAAGACGTTGTAGATGGTTCAG 58.296 38.462 0.00 0.00 32.93 3.02
4142 4573 7.634671 TCTATAAGACGTTGTAGATGGTTCA 57.365 36.000 0.00 0.00 32.93 3.18
4148 4579 8.683615 TGTTCACATCTATAAGACGTTGTAGAT 58.316 33.333 0.00 0.00 43.98 1.98
4149 4580 8.047413 TGTTCACATCTATAAGACGTTGTAGA 57.953 34.615 0.00 0.00 39.78 2.59
4150 4581 8.683550 TTGTTCACATCTATAAGACGTTGTAG 57.316 34.615 0.00 0.00 0.00 2.74
4151 4582 9.135843 CTTTGTTCACATCTATAAGACGTTGTA 57.864 33.333 0.00 0.00 0.00 2.41
4152 4583 7.117812 CCTTTGTTCACATCTATAAGACGTTGT 59.882 37.037 0.00 0.00 0.00 3.32
4153 4584 7.413000 CCCTTTGTTCACATCTATAAGACGTTG 60.413 40.741 0.00 0.00 0.00 4.10
4154 4585 6.594159 CCCTTTGTTCACATCTATAAGACGTT 59.406 38.462 0.00 0.00 0.00 3.99
4155 4586 6.070995 TCCCTTTGTTCACATCTATAAGACGT 60.071 38.462 0.00 0.00 0.00 4.34
4156 4587 6.338146 TCCCTTTGTTCACATCTATAAGACG 58.662 40.000 0.00 0.00 0.00 4.18
4157 4588 7.331791 ACTCCCTTTGTTCACATCTATAAGAC 58.668 38.462 0.00 0.00 0.00 3.01
4158 4589 7.496346 ACTCCCTTTGTTCACATCTATAAGA 57.504 36.000 0.00 0.00 0.00 2.10
4159 4590 9.667107 TTTACTCCCTTTGTTCACATCTATAAG 57.333 33.333 0.00 0.00 0.00 1.73
4164 4595 8.934023 TTATTTTACTCCCTTTGTTCACATCT 57.066 30.769 0.00 0.00 0.00 2.90
4165 4596 9.974980 TTTTATTTTACTCCCTTTGTTCACATC 57.025 29.630 0.00 0.00 0.00 3.06
4166 4597 9.758651 GTTTTATTTTACTCCCTTTGTTCACAT 57.241 29.630 0.00 0.00 0.00 3.21
4167 4598 7.916450 CGTTTTATTTTACTCCCTTTGTTCACA 59.084 33.333 0.00 0.00 0.00 3.58
4168 4599 7.096353 GCGTTTTATTTTACTCCCTTTGTTCAC 60.096 37.037 0.00 0.00 0.00 3.18
4169 4600 6.919115 GCGTTTTATTTTACTCCCTTTGTTCA 59.081 34.615 0.00 0.00 0.00 3.18
4170 4601 7.114388 CAGCGTTTTATTTTACTCCCTTTGTTC 59.886 37.037 0.00 0.00 0.00 3.18
4171 4602 6.921307 CAGCGTTTTATTTTACTCCCTTTGTT 59.079 34.615 0.00 0.00 0.00 2.83
4172 4603 6.443792 CAGCGTTTTATTTTACTCCCTTTGT 58.556 36.000 0.00 0.00 0.00 2.83
4173 4604 5.861787 CCAGCGTTTTATTTTACTCCCTTTG 59.138 40.000 0.00 0.00 0.00 2.77
4174 4605 5.537295 ACCAGCGTTTTATTTTACTCCCTTT 59.463 36.000 0.00 0.00 0.00 3.11
4175 4606 5.074804 ACCAGCGTTTTATTTTACTCCCTT 58.925 37.500 0.00 0.00 0.00 3.95
4176 4607 4.659115 ACCAGCGTTTTATTTTACTCCCT 58.341 39.130 0.00 0.00 0.00 4.20
4177 4608 6.492254 CATACCAGCGTTTTATTTTACTCCC 58.508 40.000 0.00 0.00 0.00 4.30
4178 4609 5.969435 GCATACCAGCGTTTTATTTTACTCC 59.031 40.000 0.00 0.00 0.00 3.85
4179 4610 6.548171 TGCATACCAGCGTTTTATTTTACTC 58.452 36.000 0.00 0.00 37.31 2.59
4180 4611 6.503589 TGCATACCAGCGTTTTATTTTACT 57.496 33.333 0.00 0.00 37.31 2.24
4181 4612 6.750039 ACATGCATACCAGCGTTTTATTTTAC 59.250 34.615 0.00 0.00 37.31 2.01
4182 4613 6.857956 ACATGCATACCAGCGTTTTATTTTA 58.142 32.000 0.00 0.00 37.31 1.52
4183 4614 5.719173 ACATGCATACCAGCGTTTTATTTT 58.281 33.333 0.00 0.00 37.31 1.82
4184 4615 5.323371 ACATGCATACCAGCGTTTTATTT 57.677 34.783 0.00 0.00 37.31 1.40
4185 4616 4.981806 ACATGCATACCAGCGTTTTATT 57.018 36.364 0.00 0.00 37.31 1.40
4186 4617 4.920376 GAACATGCATACCAGCGTTTTAT 58.080 39.130 0.00 0.00 37.31 1.40
4187 4618 4.349663 GAACATGCATACCAGCGTTTTA 57.650 40.909 0.00 0.00 37.31 1.52
4188 4619 3.216147 GAACATGCATACCAGCGTTTT 57.784 42.857 0.00 0.00 37.31 2.43
4189 4620 2.919666 GAACATGCATACCAGCGTTT 57.080 45.000 0.00 0.00 37.31 3.60


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.