Multiple sequence alignment - TraesCS2D01G557900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G557900 chr2D 100.000 3948 0 0 1 3948 630619918 630623865 0.000000e+00 7291.0
1 TraesCS2D01G557900 chr2D 93.886 2486 107 33 1049 3519 630098979 630096524 0.000000e+00 3707.0
2 TraesCS2D01G557900 chr2D 86.663 1807 199 31 1136 2932 629735649 629733875 0.000000e+00 1964.0
3 TraesCS2D01G557900 chr2D 87.915 1506 171 10 1434 2932 630066574 630068075 0.000000e+00 1762.0
4 TraesCS2D01G557900 chr2D 84.936 1653 210 24 1138 2773 630033725 630035355 0.000000e+00 1637.0
5 TraesCS2D01G557900 chr2D 90.754 411 32 5 24 428 44612078 44611668 9.650000e-151 544.0
6 TraesCS2D01G557900 chr2D 92.340 235 14 3 3555 3788 630096549 630096318 8.180000e-87 331.0
7 TraesCS2D01G557900 chr2D 92.377 223 16 1 1136 1357 630066307 630066529 2.290000e-82 316.0
8 TraesCS2D01G557900 chr2D 83.333 168 18 7 2946 3105 630125861 630125696 3.180000e-31 147.0
9 TraesCS2D01G557900 chr2A 94.222 2077 86 22 873 2940 760761446 760763497 0.000000e+00 3140.0
10 TraesCS2D01G557900 chr2A 86.814 1805 200 24 1136 2932 760776447 760774673 0.000000e+00 1980.0
11 TraesCS2D01G557900 chr2A 84.980 992 85 30 2952 3931 760763580 760764519 0.000000e+00 948.0
12 TraesCS2D01G557900 chr2A 90.196 204 19 1 628 830 760761145 760761348 8.410000e-67 265.0
13 TraesCS2D01G557900 chr2A 87.121 132 6 5 3048 3172 760764623 760764750 5.320000e-29 139.0
14 TraesCS2D01G557900 chr2A 92.308 52 4 0 2952 3003 760764552 760764603 1.520000e-09 75.0
15 TraesCS2D01G557900 chr2B 96.623 1836 54 3 1109 2940 773722795 773724626 0.000000e+00 3040.0
16 TraesCS2D01G557900 chr2B 85.730 1822 213 28 1136 2932 773004354 773006153 0.000000e+00 1881.0
17 TraesCS2D01G557900 chr2B 85.039 508 50 8 2420 2917 774682284 774682775 9.860000e-136 494.0
18 TraesCS2D01G557900 chr2B 81.739 575 67 26 2951 3515 773724707 773725253 2.800000e-121 446.0
19 TraesCS2D01G557900 chr2B 86.103 331 34 9 528 848 773678463 773678791 2.920000e-91 346.0
20 TraesCS2D01G557900 chr2B 81.798 445 43 17 630 1043 773722103 773722540 4.890000e-89 339.0
21 TraesCS2D01G557900 chr2B 84.091 132 14 3 502 631 773721575 773721701 1.930000e-23 121.0
22 TraesCS2D01G557900 chr5D 84.740 1481 211 11 1480 2948 409014111 409012634 0.000000e+00 1469.0
23 TraesCS2D01G557900 chr5D 88.443 424 43 4 19 437 8634254 8633832 1.270000e-139 507.0
24 TraesCS2D01G557900 chr5D 88.592 412 35 7 24 429 286194025 286194430 1.270000e-134 490.0
25 TraesCS2D01G557900 chr5B 89.216 408 38 5 26 429 655193886 655194291 4.550000e-139 505.0
26 TraesCS2D01G557900 chr4A 89.104 413 36 6 25 429 620428306 620428717 4.550000e-139 505.0
27 TraesCS2D01G557900 chr7B 88.480 408 41 5 19 421 205770054 205769648 4.590000e-134 488.0
28 TraesCS2D01G557900 chr7B 100.000 29 0 0 3902 3930 601130581 601130553 2.000000e-03 54.7
29 TraesCS2D01G557900 chr6A 88.293 410 43 4 24 429 116810796 116810388 1.650000e-133 486.0
30 TraesCS2D01G557900 chr6A 87.981 416 39 5 24 430 185636684 185636271 7.670000e-132 481.0
31 TraesCS2D01G557900 chr7A 88.670 406 35 7 24 428 57025558 57025953 5.930000e-133 484.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G557900 chr2D 630619918 630623865 3947 False 7291.0 7291 100.00000 1 3948 1 chr2D.!!$F2 3947
1 TraesCS2D01G557900 chr2D 630096318 630098979 2661 True 2019.0 3707 93.11300 1049 3788 2 chr2D.!!$R4 2739
2 TraesCS2D01G557900 chr2D 629733875 629735649 1774 True 1964.0 1964 86.66300 1136 2932 1 chr2D.!!$R2 1796
3 TraesCS2D01G557900 chr2D 630033725 630035355 1630 False 1637.0 1637 84.93600 1138 2773 1 chr2D.!!$F1 1635
4 TraesCS2D01G557900 chr2D 630066307 630068075 1768 False 1039.0 1762 90.14600 1136 2932 2 chr2D.!!$F3 1796
5 TraesCS2D01G557900 chr2A 760774673 760776447 1774 True 1980.0 1980 86.81400 1136 2932 1 chr2A.!!$R1 1796
6 TraesCS2D01G557900 chr2A 760761145 760764750 3605 False 913.4 3140 89.76540 628 3931 5 chr2A.!!$F1 3303
7 TraesCS2D01G557900 chr2B 773004354 773006153 1799 False 1881.0 1881 85.73000 1136 2932 1 chr2B.!!$F1 1796
8 TraesCS2D01G557900 chr2B 773721575 773725253 3678 False 986.5 3040 86.06275 502 3515 4 chr2B.!!$F4 3013
9 TraesCS2D01G557900 chr5D 409012634 409014111 1477 True 1469.0 1469 84.74000 1480 2948 1 chr5D.!!$R2 1468

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
66 67 0.320374 TACCAGCGCACCCTATATGC 59.680 55.0 11.47 0.0 39.81 3.14 F
1046 1523 0.108424 GTCACTTGCTCTGCTCCGAT 60.108 55.0 0.00 0.0 0.00 4.18 F
1047 1524 0.174389 TCACTTGCTCTGCTCCGATC 59.826 55.0 0.00 0.0 0.00 3.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1075 1552 0.034059 CGGGCGCCTATCTCTTGAAT 59.966 55.000 28.56 0.0 0.00 2.57 R
2485 3184 1.068055 GCGTCCTCGTCCTTGAAGTAA 60.068 52.381 0.00 0.0 39.49 2.24 R
3038 3815 2.294979 CAGGCTTGCTGAATGCTGATA 58.705 47.619 0.00 0.0 43.37 2.15 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 2.636647 AAAAAGGCATGGTTTGGTGG 57.363 45.000 0.00 0.00 0.00 4.61
25 26 1.799933 AAAAGGCATGGTTTGGTGGA 58.200 45.000 0.00 0.00 0.00 4.02
26 27 1.799933 AAAGGCATGGTTTGGTGGAA 58.200 45.000 0.00 0.00 0.00 3.53
27 28 1.799933 AAGGCATGGTTTGGTGGAAA 58.200 45.000 0.00 0.00 0.00 3.13
28 29 1.799933 AGGCATGGTTTGGTGGAAAA 58.200 45.000 0.00 0.00 0.00 2.29
29 30 2.337849 AGGCATGGTTTGGTGGAAAAT 58.662 42.857 0.00 0.00 0.00 1.82
30 31 3.515562 AGGCATGGTTTGGTGGAAAATA 58.484 40.909 0.00 0.00 0.00 1.40
31 32 4.103342 AGGCATGGTTTGGTGGAAAATAT 58.897 39.130 0.00 0.00 0.00 1.28
32 33 4.080975 AGGCATGGTTTGGTGGAAAATATG 60.081 41.667 0.00 0.00 0.00 1.78
33 34 4.081198 GGCATGGTTTGGTGGAAAATATGA 60.081 41.667 0.00 0.00 0.00 2.15
34 35 5.486526 GCATGGTTTGGTGGAAAATATGAA 58.513 37.500 0.00 0.00 0.00 2.57
35 36 5.581874 GCATGGTTTGGTGGAAAATATGAAG 59.418 40.000 0.00 0.00 0.00 3.02
36 37 5.736951 TGGTTTGGTGGAAAATATGAAGG 57.263 39.130 0.00 0.00 0.00 3.46
37 38 5.398236 TGGTTTGGTGGAAAATATGAAGGA 58.602 37.500 0.00 0.00 0.00 3.36
38 39 5.480073 TGGTTTGGTGGAAAATATGAAGGAG 59.520 40.000 0.00 0.00 0.00 3.69
39 40 5.714806 GGTTTGGTGGAAAATATGAAGGAGA 59.285 40.000 0.00 0.00 0.00 3.71
40 41 6.210584 GGTTTGGTGGAAAATATGAAGGAGAA 59.789 38.462 0.00 0.00 0.00 2.87
41 42 6.834168 TTGGTGGAAAATATGAAGGAGAAC 57.166 37.500 0.00 0.00 0.00 3.01
42 43 5.261216 TGGTGGAAAATATGAAGGAGAACC 58.739 41.667 0.00 0.00 0.00 3.62
59 60 2.746277 CTGGTTACCAGCGCACCC 60.746 66.667 19.16 0.00 45.13 4.61
60 61 3.246112 TGGTTACCAGCGCACCCT 61.246 61.111 11.47 0.00 0.00 4.34
61 62 1.895020 CTGGTTACCAGCGCACCCTA 61.895 60.000 19.16 0.00 45.13 3.53
62 63 1.268992 TGGTTACCAGCGCACCCTAT 61.269 55.000 11.47 0.00 0.00 2.57
63 64 0.754472 GGTTACCAGCGCACCCTATA 59.246 55.000 11.47 0.00 0.00 1.31
64 65 1.346722 GGTTACCAGCGCACCCTATAT 59.653 52.381 11.47 0.00 0.00 0.86
65 66 2.413837 GTTACCAGCGCACCCTATATG 58.586 52.381 11.47 0.00 0.00 1.78
66 67 0.320374 TACCAGCGCACCCTATATGC 59.680 55.000 11.47 0.00 39.81 3.14
67 68 1.071299 CCAGCGCACCCTATATGCA 59.929 57.895 11.47 0.00 43.57 3.96
68 69 0.534877 CCAGCGCACCCTATATGCAA 60.535 55.000 11.47 0.00 43.57 4.08
69 70 1.308047 CAGCGCACCCTATATGCAAA 58.692 50.000 11.47 0.00 43.57 3.68
70 71 1.675483 CAGCGCACCCTATATGCAAAA 59.325 47.619 11.47 0.00 43.57 2.44
71 72 2.098934 CAGCGCACCCTATATGCAAAAA 59.901 45.455 11.47 0.00 43.57 1.94
162 163 8.969121 TTGTAGTCGTATAAAAAGATTCGTCA 57.031 30.769 0.00 0.00 0.00 4.35
163 164 8.610855 TGTAGTCGTATAAAAAGATTCGTCAG 57.389 34.615 0.00 0.00 0.00 3.51
164 165 8.453320 TGTAGTCGTATAAAAAGATTCGTCAGA 58.547 33.333 0.00 0.00 0.00 3.27
165 166 7.972623 AGTCGTATAAAAAGATTCGTCAGAG 57.027 36.000 0.00 0.00 0.00 3.35
166 167 7.759465 AGTCGTATAAAAAGATTCGTCAGAGA 58.241 34.615 0.00 0.00 0.00 3.10
167 168 8.242053 AGTCGTATAAAAAGATTCGTCAGAGAA 58.758 33.333 0.00 0.00 34.31 2.87
168 169 9.021863 GTCGTATAAAAAGATTCGTCAGAGAAT 57.978 33.333 0.00 0.00 42.92 2.40
169 170 9.020813 TCGTATAAAAAGATTCGTCAGAGAATG 57.979 33.333 0.00 0.00 40.58 2.67
170 171 9.020813 CGTATAAAAAGATTCGTCAGAGAATGA 57.979 33.333 0.00 0.00 40.58 2.57
181 182 4.341366 TCAGAGAATGACTTCTGTTGCA 57.659 40.909 1.90 0.00 41.87 4.08
182 183 4.903054 TCAGAGAATGACTTCTGTTGCAT 58.097 39.130 0.00 0.00 41.87 3.96
183 184 4.934001 TCAGAGAATGACTTCTGTTGCATC 59.066 41.667 0.00 0.00 41.87 3.91
184 185 4.094590 CAGAGAATGACTTCTGTTGCATCC 59.905 45.833 0.00 0.00 41.87 3.51
185 186 4.019501 AGAGAATGACTTCTGTTGCATCCT 60.020 41.667 0.00 0.00 41.87 3.24
186 187 4.008330 AGAATGACTTCTGTTGCATCCTG 58.992 43.478 0.00 0.00 40.28 3.86
187 188 2.189594 TGACTTCTGTTGCATCCTGG 57.810 50.000 0.00 0.00 0.00 4.45
188 189 1.699083 TGACTTCTGTTGCATCCTGGA 59.301 47.619 0.00 0.00 0.00 3.86
189 190 2.306805 TGACTTCTGTTGCATCCTGGAT 59.693 45.455 2.57 2.57 0.00 3.41
190 191 2.941720 GACTTCTGTTGCATCCTGGATC 59.058 50.000 6.13 2.88 0.00 3.36
191 192 1.938577 CTTCTGTTGCATCCTGGATCG 59.061 52.381 6.13 4.11 0.00 3.69
192 193 1.194218 TCTGTTGCATCCTGGATCGA 58.806 50.000 6.13 0.00 0.00 3.59
193 194 1.554617 TCTGTTGCATCCTGGATCGAA 59.445 47.619 6.13 0.00 0.00 3.71
194 195 1.938577 CTGTTGCATCCTGGATCGAAG 59.061 52.381 6.13 0.00 0.00 3.79
195 196 1.554617 TGTTGCATCCTGGATCGAAGA 59.445 47.619 6.13 0.00 45.75 2.87
196 197 2.171237 TGTTGCATCCTGGATCGAAGAT 59.829 45.455 6.13 0.00 45.12 2.40
197 198 3.209410 GTTGCATCCTGGATCGAAGATT 58.791 45.455 6.13 0.00 45.12 2.40
198 199 3.117491 TGCATCCTGGATCGAAGATTC 57.883 47.619 6.13 0.00 45.12 2.52
227 228 7.969387 AAAAACGCTATGTACAAGCATTATG 57.031 32.000 21.73 12.21 40.08 1.90
228 229 4.732285 ACGCTATGTACAAGCATTATGC 57.268 40.909 21.73 9.46 45.46 3.14
242 243 5.980324 GCATTATGCACGCTATATTGTTG 57.020 39.130 12.80 0.00 44.26 3.33
243 244 5.451908 GCATTATGCACGCTATATTGTTGT 58.548 37.500 12.80 0.00 44.26 3.32
244 245 5.565259 GCATTATGCACGCTATATTGTTGTC 59.435 40.000 12.80 0.00 44.26 3.18
245 246 6.657888 CATTATGCACGCTATATTGTTGTCA 58.342 36.000 0.00 0.00 0.00 3.58
246 247 6.859420 TTATGCACGCTATATTGTTGTCAT 57.141 33.333 0.00 0.00 0.00 3.06
247 248 7.954788 TTATGCACGCTATATTGTTGTCATA 57.045 32.000 0.00 0.00 0.00 2.15
248 249 6.859420 ATGCACGCTATATTGTTGTCATAA 57.141 33.333 0.00 0.00 0.00 1.90
249 250 6.670077 TGCACGCTATATTGTTGTCATAAA 57.330 33.333 0.00 0.00 0.00 1.40
250 251 6.482835 TGCACGCTATATTGTTGTCATAAAC 58.517 36.000 0.00 0.00 0.00 2.01
251 252 6.315144 TGCACGCTATATTGTTGTCATAAACT 59.685 34.615 0.00 0.00 0.00 2.66
252 253 7.148323 TGCACGCTATATTGTTGTCATAAACTT 60.148 33.333 0.00 0.00 0.00 2.66
253 254 7.164171 GCACGCTATATTGTTGTCATAAACTTG 59.836 37.037 0.00 0.00 0.00 3.16
254 255 8.175069 CACGCTATATTGTTGTCATAAACTTGT 58.825 33.333 0.00 0.00 0.00 3.16
255 256 8.388103 ACGCTATATTGTTGTCATAAACTTGTC 58.612 33.333 0.00 0.00 0.00 3.18
256 257 8.604035 CGCTATATTGTTGTCATAAACTTGTCT 58.396 33.333 0.00 0.00 0.00 3.41
294 295 9.690913 AAGTCAATATGAATCATTTCTTCTCCA 57.309 29.630 0.00 0.00 32.78 3.86
295 296 9.690913 AGTCAATATGAATCATTTCTTCTCCAA 57.309 29.630 0.00 0.00 32.78 3.53
310 311 8.897872 TTCTTCTCCAAACTTTTTATACGAGT 57.102 30.769 0.00 0.00 0.00 4.18
311 312 9.985730 TTCTTCTCCAAACTTTTTATACGAGTA 57.014 29.630 0.00 0.00 0.00 2.59
312 313 9.415544 TCTTCTCCAAACTTTTTATACGAGTAC 57.584 33.333 0.00 0.00 0.00 2.73
313 314 9.199982 CTTCTCCAAACTTTTTATACGAGTACA 57.800 33.333 0.00 0.00 0.00 2.90
314 315 9.545105 TTCTCCAAACTTTTTATACGAGTACAA 57.455 29.630 0.00 0.00 0.00 2.41
315 316 9.715121 TCTCCAAACTTTTTATACGAGTACAAT 57.285 29.630 0.00 0.00 0.00 2.71
330 331 8.357796 ACGAGTACAATATCTGATCATGTTTG 57.642 34.615 11.85 5.51 0.00 2.93
331 332 8.197439 ACGAGTACAATATCTGATCATGTTTGA 58.803 33.333 11.85 0.00 36.00 2.69
332 333 9.201127 CGAGTACAATATCTGATCATGTTTGAT 57.799 33.333 11.85 2.41 45.39 2.57
336 337 8.756486 ACAATATCTGATCATGTTTGATTCCA 57.244 30.769 0.00 0.00 42.73 3.53
337 338 9.192642 ACAATATCTGATCATGTTTGATTCCAA 57.807 29.630 0.00 0.00 42.73 3.53
397 398 1.588674 TTTTCGGCATATAGGGTGCG 58.411 50.000 0.00 0.00 43.40 5.34
398 399 0.882927 TTTCGGCATATAGGGTGCGC 60.883 55.000 0.00 0.00 43.40 6.09
399 400 3.112075 CGGCATATAGGGTGCGCG 61.112 66.667 0.00 0.00 43.40 6.86
400 401 2.742372 GGCATATAGGGTGCGCGG 60.742 66.667 8.83 0.00 43.40 6.46
401 402 2.742372 GCATATAGGGTGCGCGGG 60.742 66.667 8.83 0.00 32.29 6.13
402 403 2.741092 CATATAGGGTGCGCGGGT 59.259 61.111 8.83 0.00 0.00 5.28
403 404 1.969085 CATATAGGGTGCGCGGGTA 59.031 57.895 8.83 0.00 0.00 3.69
404 405 0.389426 CATATAGGGTGCGCGGGTAC 60.389 60.000 12.29 12.29 0.00 3.34
417 418 3.384348 GGTACCCGAGAGCACCAA 58.616 61.111 0.00 0.00 0.00 3.67
418 419 1.218316 GGTACCCGAGAGCACCAAG 59.782 63.158 0.00 0.00 0.00 3.61
419 420 1.542187 GGTACCCGAGAGCACCAAGT 61.542 60.000 0.00 0.00 0.00 3.16
420 421 0.320697 GTACCCGAGAGCACCAAGTT 59.679 55.000 0.00 0.00 0.00 2.66
421 422 0.606604 TACCCGAGAGCACCAAGTTC 59.393 55.000 0.00 0.00 0.00 3.01
422 423 1.738099 CCCGAGAGCACCAAGTTCG 60.738 63.158 0.00 0.00 31.99 3.95
423 424 2.383527 CCGAGAGCACCAAGTTCGC 61.384 63.158 0.00 0.00 31.99 4.70
424 425 2.720758 CGAGAGCACCAAGTTCGCG 61.721 63.158 0.00 0.00 43.11 5.87
425 426 3.016474 GAGAGCACCAAGTTCGCGC 62.016 63.158 0.00 0.00 31.99 6.86
426 427 4.090057 GAGCACCAAGTTCGCGCC 62.090 66.667 0.00 0.00 0.00 6.53
429 430 3.055719 CACCAAGTTCGCGCCCAT 61.056 61.111 0.00 0.00 0.00 4.00
430 431 3.055719 ACCAAGTTCGCGCCCATG 61.056 61.111 0.00 0.00 0.00 3.66
431 432 3.814268 CCAAGTTCGCGCCCATGG 61.814 66.667 4.14 4.14 0.00 3.66
432 433 3.055719 CAAGTTCGCGCCCATGGT 61.056 61.111 11.73 0.00 0.00 3.55
433 434 2.282180 AAGTTCGCGCCCATGGTT 60.282 55.556 11.73 0.00 0.00 3.67
434 435 2.625823 AAGTTCGCGCCCATGGTTG 61.626 57.895 11.73 3.32 0.00 3.77
435 436 4.114997 GTTCGCGCCCATGGTTGG 62.115 66.667 11.73 0.00 43.23 3.77
446 447 3.525268 CCATGGTTGGGTCTATTTTGC 57.475 47.619 2.57 0.00 39.56 3.68
447 448 2.830923 CCATGGTTGGGTCTATTTTGCA 59.169 45.455 2.57 0.00 39.56 4.08
448 449 3.451902 CCATGGTTGGGTCTATTTTGCAT 59.548 43.478 2.57 0.00 39.56 3.96
449 450 4.435425 CATGGTTGGGTCTATTTTGCATG 58.565 43.478 0.00 0.00 0.00 4.06
450 451 3.772387 TGGTTGGGTCTATTTTGCATGA 58.228 40.909 0.00 0.00 0.00 3.07
451 452 4.155709 TGGTTGGGTCTATTTTGCATGAA 58.844 39.130 0.00 0.00 0.00 2.57
452 453 4.021544 TGGTTGGGTCTATTTTGCATGAAC 60.022 41.667 0.00 0.00 0.00 3.18
453 454 4.021544 GGTTGGGTCTATTTTGCATGAACA 60.022 41.667 0.00 0.00 0.00 3.18
454 455 4.782019 TGGGTCTATTTTGCATGAACAC 57.218 40.909 0.00 0.00 0.00 3.32
455 456 4.148079 TGGGTCTATTTTGCATGAACACA 58.852 39.130 0.00 0.00 0.00 3.72
456 457 4.022416 TGGGTCTATTTTGCATGAACACAC 60.022 41.667 0.00 0.00 0.00 3.82
457 458 4.218417 GGGTCTATTTTGCATGAACACACT 59.782 41.667 0.00 0.00 0.00 3.55
458 459 5.414454 GGGTCTATTTTGCATGAACACACTA 59.586 40.000 0.00 0.00 0.00 2.74
459 460 6.314784 GGTCTATTTTGCATGAACACACTAC 58.685 40.000 0.00 0.00 0.00 2.73
460 461 6.072728 GGTCTATTTTGCATGAACACACTACA 60.073 38.462 0.00 0.00 0.00 2.74
461 462 7.362056 GGTCTATTTTGCATGAACACACTACAT 60.362 37.037 0.00 0.00 0.00 2.29
462 463 7.482743 GTCTATTTTGCATGAACACACTACATG 59.517 37.037 0.00 0.00 42.60 3.21
463 464 4.502171 TTTGCATGAACACACTACATGG 57.498 40.909 0.00 0.00 40.83 3.66
464 465 3.415457 TGCATGAACACACTACATGGA 57.585 42.857 0.00 0.00 40.83 3.41
465 466 3.749226 TGCATGAACACACTACATGGAA 58.251 40.909 0.00 0.00 38.84 3.53
466 467 4.334552 TGCATGAACACACTACATGGAAT 58.665 39.130 0.00 0.00 38.84 3.01
467 468 4.766373 TGCATGAACACACTACATGGAATT 59.234 37.500 0.00 0.00 38.84 2.17
468 469 5.243507 TGCATGAACACACTACATGGAATTT 59.756 36.000 0.00 0.00 38.84 1.82
469 470 6.158598 GCATGAACACACTACATGGAATTTT 58.841 36.000 0.00 0.00 40.83 1.82
470 471 6.308766 GCATGAACACACTACATGGAATTTTC 59.691 38.462 0.00 0.00 40.83 2.29
485 486 5.816682 GGAATTTTCCTAGGTCTCCTTTGA 58.183 41.667 9.08 0.00 44.11 2.69
486 487 6.246163 GGAATTTTCCTAGGTCTCCTTTGAA 58.754 40.000 9.08 0.00 44.11 2.69
487 488 6.151312 GGAATTTTCCTAGGTCTCCTTTGAAC 59.849 42.308 9.08 0.00 44.11 3.18
488 489 4.635699 TTTCCTAGGTCTCCTTTGAACC 57.364 45.455 9.08 0.00 34.61 3.62
489 490 3.269592 TCCTAGGTCTCCTTTGAACCA 57.730 47.619 9.08 0.00 34.61 3.67
490 491 2.904434 TCCTAGGTCTCCTTTGAACCAC 59.096 50.000 9.08 0.00 34.61 4.16
491 492 2.907042 CCTAGGTCTCCTTTGAACCACT 59.093 50.000 0.00 0.00 34.61 4.00
492 493 3.328050 CCTAGGTCTCCTTTGAACCACTT 59.672 47.826 0.00 0.00 34.61 3.16
493 494 3.214696 AGGTCTCCTTTGAACCACTTG 57.785 47.619 0.00 0.00 0.00 3.16
494 495 2.509964 AGGTCTCCTTTGAACCACTTGT 59.490 45.455 0.00 0.00 0.00 3.16
495 496 3.714798 AGGTCTCCTTTGAACCACTTGTA 59.285 43.478 0.00 0.00 0.00 2.41
496 497 4.165372 AGGTCTCCTTTGAACCACTTGTAA 59.835 41.667 0.00 0.00 0.00 2.41
497 498 4.885325 GGTCTCCTTTGAACCACTTGTAAA 59.115 41.667 0.00 0.00 0.00 2.01
498 499 7.904276 TAGGTCTCCTTTGAACCACTTGTAAAG 60.904 40.741 0.00 0.00 42.03 1.85
513 514 4.903045 TGTAAAGGGAGGTGTTCCTAAG 57.097 45.455 0.00 0.00 45.24 2.18
522 523 4.041815 GGAGGTGTTCCTAAGTCTCCTTTT 59.958 45.833 0.00 0.00 45.24 2.27
523 524 5.456330 GGAGGTGTTCCTAAGTCTCCTTTTT 60.456 44.000 0.00 0.00 45.24 1.94
524 525 6.239800 GGAGGTGTTCCTAAGTCTCCTTTTTA 60.240 42.308 0.00 0.00 45.24 1.52
525 526 6.531923 AGGTGTTCCTAAGTCTCCTTTTTAC 58.468 40.000 0.00 0.00 43.12 2.01
526 527 5.407691 GGTGTTCCTAAGTCTCCTTTTTACG 59.592 44.000 0.00 0.00 31.89 3.18
545 546 4.499037 ACGTATGTGGAAAAAGAAAGCC 57.501 40.909 0.00 0.00 0.00 4.35
550 551 6.089417 CGTATGTGGAAAAAGAAAGCCAAATC 59.911 38.462 0.00 0.00 31.18 2.17
564 565 0.323360 CAAATCTTTCGGGCTCCCCA 60.323 55.000 0.00 0.00 45.83 4.96
570 571 1.211949 CTTTCGGGCTCCCCATCTTAA 59.788 52.381 0.00 0.00 45.83 1.85
572 573 1.054406 TCGGGCTCCCCATCTTAAGG 61.054 60.000 1.85 0.00 45.83 2.69
575 576 1.227973 GCTCCCCATCTTAAGGCCG 60.228 63.158 1.85 0.00 0.00 6.13
587 588 5.284861 TCTTAAGGCCGCACTATCATAAA 57.715 39.130 1.85 0.00 0.00 1.40
593 594 5.665459 AGGCCGCACTATCATAAATCTATC 58.335 41.667 0.00 0.00 0.00 2.08
596 597 6.183360 GGCCGCACTATCATAAATCTATCAAC 60.183 42.308 0.00 0.00 0.00 3.18
618 621 8.081633 TCAACAAATGCTTAACCTACAAAGATG 58.918 33.333 0.00 0.00 0.00 2.90
663 1070 6.791303 TGGTCACTAACATTTCAAAGTCAAC 58.209 36.000 0.00 0.00 0.00 3.18
671 1078 4.141756 ACATTTCAAAGTCAACATGGCCAA 60.142 37.500 10.96 0.00 0.00 4.52
684 1091 3.896888 ACATGGCCAATGAGTCAAAAGAA 59.103 39.130 10.96 0.00 38.72 2.52
693 1100 7.307573 GCCAATGAGTCAAAAGAAATTTCAAGG 60.308 37.037 19.99 6.85 0.00 3.61
696 1103 4.620982 AGTCAAAAGAAATTTCAAGGCCG 58.379 39.130 19.99 3.90 0.00 6.13
781 1188 1.578926 CCGAAATGGCACGAGCAAA 59.421 52.632 7.26 0.00 44.61 3.68
852 1300 0.321122 CCTGTCAGTCAGCTCCAACC 60.321 60.000 0.00 0.00 42.38 3.77
947 1417 1.153289 CGCCTCTTGACCCCATCAG 60.153 63.158 0.00 0.00 38.99 2.90
1043 1520 1.287730 CGTGTCACTTGCTCTGCTCC 61.288 60.000 0.65 0.00 0.00 4.70
1044 1521 1.005748 TGTCACTTGCTCTGCTCCG 60.006 57.895 0.00 0.00 0.00 4.63
1045 1522 1.290324 GTCACTTGCTCTGCTCCGA 59.710 57.895 0.00 0.00 0.00 4.55
1046 1523 0.108424 GTCACTTGCTCTGCTCCGAT 60.108 55.000 0.00 0.00 0.00 4.18
1047 1524 0.174389 TCACTTGCTCTGCTCCGATC 59.826 55.000 0.00 0.00 0.00 3.69
1059 1536 1.678627 GCTCCGATCTGCTCTGTTCTA 59.321 52.381 0.00 0.00 0.00 2.10
1067 1544 2.246067 TCTGCTCTGTTCTATCTCCCCT 59.754 50.000 0.00 0.00 0.00 4.79
1070 1547 2.894765 GCTCTGTTCTATCTCCCCTACC 59.105 54.545 0.00 0.00 0.00 3.18
1072 1549 4.547671 CTCTGTTCTATCTCCCCTACCAA 58.452 47.826 0.00 0.00 0.00 3.67
1073 1550 4.955335 TCTGTTCTATCTCCCCTACCAAA 58.045 43.478 0.00 0.00 0.00 3.28
1074 1551 4.715297 TCTGTTCTATCTCCCCTACCAAAC 59.285 45.833 0.00 0.00 0.00 2.93
1075 1552 4.431378 TGTTCTATCTCCCCTACCAAACA 58.569 43.478 0.00 0.00 0.00 2.83
1076 1553 5.036916 TGTTCTATCTCCCCTACCAAACAT 58.963 41.667 0.00 0.00 0.00 2.71
1077 1554 5.491078 TGTTCTATCTCCCCTACCAAACATT 59.509 40.000 0.00 0.00 0.00 2.71
1080 1557 4.946160 ATCTCCCCTACCAAACATTCAA 57.054 40.909 0.00 0.00 0.00 2.69
1350 2032 2.084681 CGACGTCGTAAGCACCCAC 61.085 63.158 29.08 0.00 37.18 4.61
1402 2084 2.389866 GATCGCCTCCGTCGTCGATT 62.390 60.000 2.98 0.00 41.11 3.34
1403 2085 2.663630 ATCGCCTCCGTCGTCGATTG 62.664 60.000 2.98 0.00 38.34 2.67
1427 2109 3.680789 CCGCGACAAGGTGAATTTAATC 58.319 45.455 8.23 0.00 0.00 1.75
1534 2224 4.699522 GAGGCGCACTTCGGGGTT 62.700 66.667 10.83 0.00 38.94 4.11
1573 2263 1.157257 TCAACAGCATCAACACGCGT 61.157 50.000 5.58 5.58 0.00 6.01
1963 2662 2.117156 GGAGCAGCCGACGTACCTA 61.117 63.158 0.00 0.00 0.00 3.08
2988 3765 0.307760 GGGTTGTGTCGTCTTGCTTG 59.692 55.000 0.00 0.00 0.00 4.01
3087 3868 4.474113 GCAGCTGCAAGATTCTATTATGC 58.526 43.478 33.36 0.00 41.59 3.14
3091 3872 4.709640 CTGCAAGATTCTATTATGCGCAG 58.290 43.478 18.32 0.74 39.81 5.18
3186 4011 9.860898 AATCAACTGATAAAACTAGGAATTTGC 57.139 29.630 0.00 0.00 33.73 3.68
3187 4012 8.402798 TCAACTGATAAAACTAGGAATTTGCA 57.597 30.769 0.00 0.00 0.00 4.08
3188 4013 8.855110 TCAACTGATAAAACTAGGAATTTGCAA 58.145 29.630 0.00 0.00 0.00 4.08
3189 4014 9.474920 CAACTGATAAAACTAGGAATTTGCAAA 57.525 29.630 15.44 15.44 0.00 3.68
3193 4018 9.781834 TGATAAAACTAGGAATTTGCAAATACG 57.218 29.630 24.35 13.09 0.00 3.06
3194 4019 9.783256 GATAAAACTAGGAATTTGCAAATACGT 57.217 29.630 24.35 9.80 0.00 3.57
3197 4022 9.567848 AAAACTAGGAATTTGCAAATACGTATG 57.432 29.630 24.35 14.86 0.00 2.39
3198 4023 7.859325 ACTAGGAATTTGCAAATACGTATGT 57.141 32.000 24.35 15.42 0.00 2.29
3199 4024 7.693952 ACTAGGAATTTGCAAATACGTATGTG 58.306 34.615 24.35 19.62 0.00 3.21
3200 4025 6.751514 AGGAATTTGCAAATACGTATGTGA 57.248 33.333 26.58 8.76 0.00 3.58
3201 4026 6.551736 AGGAATTTGCAAATACGTATGTGAC 58.448 36.000 26.58 18.02 0.00 3.67
3202 4027 6.374333 AGGAATTTGCAAATACGTATGTGACT 59.626 34.615 26.58 10.55 0.00 3.41
3203 4028 6.468956 GGAATTTGCAAATACGTATGTGACTG 59.531 38.462 26.58 12.11 0.00 3.51
3204 4029 6.735678 ATTTGCAAATACGTATGTGACTGA 57.264 33.333 26.58 10.88 0.00 3.41
3205 4030 6.546972 TTTGCAAATACGTATGTGACTGAA 57.453 33.333 26.58 12.72 0.00 3.02
3206 4031 6.546972 TTGCAAATACGTATGTGACTGAAA 57.453 33.333 26.58 10.75 0.00 2.69
3207 4032 6.164408 TGCAAATACGTATGTGACTGAAAG 57.836 37.500 26.58 0.95 42.29 2.62
3363 4203 3.823304 GGAGAAAGGTGAATCTGTGCTTT 59.177 43.478 0.00 0.00 0.00 3.51
3364 4204 4.320788 GGAGAAAGGTGAATCTGTGCTTTG 60.321 45.833 0.00 0.00 0.00 2.77
3365 4205 4.210331 AGAAAGGTGAATCTGTGCTTTGT 58.790 39.130 0.00 0.00 0.00 2.83
3367 4207 1.610522 AGGTGAATCTGTGCTTTGTGC 59.389 47.619 0.00 0.00 43.25 4.57
3368 4208 1.664016 GGTGAATCTGTGCTTTGTGCG 60.664 52.381 0.00 0.00 46.63 5.34
3377 4217 0.667453 TGCTTTGTGCGCATTTCTGA 59.333 45.000 15.91 0.00 46.63 3.27
3378 4218 1.270274 TGCTTTGTGCGCATTTCTGAT 59.730 42.857 15.91 0.00 46.63 2.90
3379 4219 2.288334 TGCTTTGTGCGCATTTCTGATT 60.288 40.909 15.91 0.00 46.63 2.57
3380 4220 2.343544 GCTTTGTGCGCATTTCTGATTC 59.656 45.455 15.91 0.00 0.00 2.52
3381 4221 3.567530 CTTTGTGCGCATTTCTGATTCA 58.432 40.909 15.91 0.00 0.00 2.57
3390 4230 4.437930 CGCATTTCTGATTCACCTTTCTCC 60.438 45.833 0.00 0.00 0.00 3.71
3395 4235 5.095145 TCTGATTCACCTTTCTCCTCATG 57.905 43.478 0.00 0.00 0.00 3.07
3403 4243 3.840666 ACCTTTCTCCTCATGTCTGCTTA 59.159 43.478 0.00 0.00 0.00 3.09
3414 4254 3.402628 TGTCTGCTTAGGGTTCAGTTC 57.597 47.619 0.00 0.00 0.00 3.01
3424 4264 0.094730 GGTTCAGTTCGGATTTCGCG 59.905 55.000 0.00 0.00 39.05 5.87
3433 4273 2.592194 TCGGATTTCGCGTATGCTATC 58.408 47.619 5.77 5.36 39.65 2.08
3464 4304 4.091365 CGTGTCTTTGTAATTCGCTCATGA 59.909 41.667 0.00 0.00 0.00 3.07
3478 4318 2.341257 CTCATGACACCGAACCTGAAG 58.659 52.381 0.00 0.00 0.00 3.02
3483 4323 3.138304 TGACACCGAACCTGAAGATTTG 58.862 45.455 0.00 0.00 0.00 2.32
3539 4379 1.464608 GCAAGCGTTGAACATGAGCTA 59.535 47.619 0.00 0.00 37.15 3.32
3602 4442 4.443881 CCAGTGCTCTGTATGATTCCATCA 60.444 45.833 14.31 0.00 40.62 3.07
3631 4471 7.253519 CGTTGCAAAGTAAGAACCAAAAGTTAC 60.254 37.037 0.00 0.00 39.40 2.50
3644 4484 5.587043 ACCAAAAGTTACTGAATGACGTCAA 59.413 36.000 24.13 5.15 0.00 3.18
3655 4495 3.992943 ATGACGTCAAAGACCCCAATA 57.007 42.857 24.13 0.00 0.00 1.90
3872 4720 7.164226 TGAATTTTTCATCGCAACTTGAAAG 57.836 32.000 0.00 0.00 41.42 2.62
3873 4721 6.756074 TGAATTTTTCATCGCAACTTGAAAGT 59.244 30.769 0.00 0.00 41.42 2.66
3874 4722 7.277539 TGAATTTTTCATCGCAACTTGAAAGTT 59.722 29.630 2.56 2.56 41.42 2.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 2.122768 TCCACCAAACCATGCCTTTTT 58.877 42.857 0.00 0.00 0.00 1.94
6 7 1.799933 TCCACCAAACCATGCCTTTT 58.200 45.000 0.00 0.00 0.00 2.27
7 8 1.799933 TTCCACCAAACCATGCCTTT 58.200 45.000 0.00 0.00 0.00 3.11
8 9 1.799933 TTTCCACCAAACCATGCCTT 58.200 45.000 0.00 0.00 0.00 4.35
9 10 1.799933 TTTTCCACCAAACCATGCCT 58.200 45.000 0.00 0.00 0.00 4.75
10 11 2.857186 ATTTTCCACCAAACCATGCC 57.143 45.000 0.00 0.00 0.00 4.40
11 12 5.083533 TCATATTTTCCACCAAACCATGC 57.916 39.130 0.00 0.00 0.00 4.06
12 13 6.070881 TCCTTCATATTTTCCACCAAACCATG 60.071 38.462 0.00 0.00 0.00 3.66
13 14 6.022315 TCCTTCATATTTTCCACCAAACCAT 58.978 36.000 0.00 0.00 0.00 3.55
14 15 5.398236 TCCTTCATATTTTCCACCAAACCA 58.602 37.500 0.00 0.00 0.00 3.67
15 16 5.714806 TCTCCTTCATATTTTCCACCAAACC 59.285 40.000 0.00 0.00 0.00 3.27
16 17 6.834168 TCTCCTTCATATTTTCCACCAAAC 57.166 37.500 0.00 0.00 0.00 2.93
17 18 6.210584 GGTTCTCCTTCATATTTTCCACCAAA 59.789 38.462 0.00 0.00 0.00 3.28
18 19 5.714806 GGTTCTCCTTCATATTTTCCACCAA 59.285 40.000 0.00 0.00 0.00 3.67
19 20 5.015178 AGGTTCTCCTTCATATTTTCCACCA 59.985 40.000 0.00 0.00 42.12 4.17
20 21 5.358160 CAGGTTCTCCTTCATATTTTCCACC 59.642 44.000 0.00 0.00 43.07 4.61
21 22 5.358160 CCAGGTTCTCCTTCATATTTTCCAC 59.642 44.000 0.00 0.00 43.07 4.02
22 23 5.015178 ACCAGGTTCTCCTTCATATTTTCCA 59.985 40.000 0.00 0.00 43.07 3.53
23 24 5.510430 ACCAGGTTCTCCTTCATATTTTCC 58.490 41.667 0.00 0.00 43.07 3.13
24 25 7.067129 GGTAACCAGGTTCTCCTTCATATTTTC 59.933 40.741 8.57 0.00 43.07 2.29
25 26 6.890268 GGTAACCAGGTTCTCCTTCATATTTT 59.110 38.462 8.57 0.00 43.07 1.82
26 27 6.011981 TGGTAACCAGGTTCTCCTTCATATTT 60.012 38.462 20.59 0.00 43.07 1.40
27 28 5.491078 TGGTAACCAGGTTCTCCTTCATATT 59.509 40.000 20.59 0.00 43.07 1.28
28 29 5.036916 TGGTAACCAGGTTCTCCTTCATAT 58.963 41.667 20.59 0.00 43.07 1.78
29 30 4.431378 TGGTAACCAGGTTCTCCTTCATA 58.569 43.478 20.59 4.52 43.07 2.15
30 31 3.256704 TGGTAACCAGGTTCTCCTTCAT 58.743 45.455 20.59 0.00 43.07 2.57
31 32 2.696775 TGGTAACCAGGTTCTCCTTCA 58.303 47.619 20.59 6.57 43.07 3.02
43 44 1.268992 ATAGGGTGCGCTGGTAACCA 61.269 55.000 14.96 0.00 38.24 3.67
44 45 0.754472 TATAGGGTGCGCTGGTAACC 59.246 55.000 9.73 7.20 35.55 2.85
45 46 2.413837 CATATAGGGTGCGCTGGTAAC 58.586 52.381 9.73 0.00 0.00 2.50
46 47 1.270625 GCATATAGGGTGCGCTGGTAA 60.271 52.381 9.73 0.00 32.29 2.85
47 48 0.320374 GCATATAGGGTGCGCTGGTA 59.680 55.000 9.73 0.00 32.29 3.25
48 49 1.071471 GCATATAGGGTGCGCTGGT 59.929 57.895 9.73 0.00 32.29 4.00
49 50 0.534877 TTGCATATAGGGTGCGCTGG 60.535 55.000 9.73 0.00 45.37 4.85
50 51 1.308047 TTTGCATATAGGGTGCGCTG 58.692 50.000 9.73 0.00 45.37 5.18
51 52 2.051334 TTTTGCATATAGGGTGCGCT 57.949 45.000 9.73 0.00 45.37 5.92
52 53 2.861462 TTTTTGCATATAGGGTGCGC 57.139 45.000 0.00 0.00 45.37 6.09
120 121 9.647797 ACGACTACAATACTTGATCATGTTTAA 57.352 29.630 18.30 2.69 0.00 1.52
122 123 9.817809 ATACGACTACAATACTTGATCATGTTT 57.182 29.630 18.30 8.93 0.00 2.83
136 137 9.577110 TGACGAATCTTTTTATACGACTACAAT 57.423 29.630 0.00 0.00 0.00 2.71
137 138 8.969121 TGACGAATCTTTTTATACGACTACAA 57.031 30.769 0.00 0.00 0.00 2.41
138 139 8.453320 TCTGACGAATCTTTTTATACGACTACA 58.547 33.333 0.00 0.00 0.00 2.74
139 140 8.832487 TCTGACGAATCTTTTTATACGACTAC 57.168 34.615 0.00 0.00 0.00 2.73
140 141 8.886719 TCTCTGACGAATCTTTTTATACGACTA 58.113 33.333 0.00 0.00 0.00 2.59
141 142 7.759465 TCTCTGACGAATCTTTTTATACGACT 58.241 34.615 0.00 0.00 0.00 4.18
142 143 7.966157 TCTCTGACGAATCTTTTTATACGAC 57.034 36.000 0.00 0.00 0.00 4.34
143 144 9.020813 CATTCTCTGACGAATCTTTTTATACGA 57.979 33.333 0.00 0.00 31.52 3.43
144 145 9.020813 TCATTCTCTGACGAATCTTTTTATACG 57.979 33.333 0.00 0.00 31.52 3.06
160 161 4.341366 TGCAACAGAAGTCATTCTCTGA 57.659 40.909 6.10 0.00 44.15 3.27
161 162 4.094590 GGATGCAACAGAAGTCATTCTCTG 59.905 45.833 0.00 0.00 44.15 3.35
162 163 4.019501 AGGATGCAACAGAAGTCATTCTCT 60.020 41.667 0.00 0.00 44.15 3.10
163 164 4.094590 CAGGATGCAACAGAAGTCATTCTC 59.905 45.833 0.00 0.00 44.15 2.87
164 165 5.106617 CCAGGATGCAACAGAAGTCATTCT 61.107 45.833 0.00 0.00 40.01 2.40
165 166 3.128242 CCAGGATGCAACAGAAGTCATTC 59.872 47.826 0.00 0.00 32.45 2.67
166 167 3.087031 CCAGGATGCAACAGAAGTCATT 58.913 45.455 0.00 0.00 31.97 2.57
167 168 2.306805 TCCAGGATGCAACAGAAGTCAT 59.693 45.455 0.00 0.00 31.97 3.06
168 169 1.699083 TCCAGGATGCAACAGAAGTCA 59.301 47.619 0.00 0.00 31.97 3.41
169 170 2.479566 TCCAGGATGCAACAGAAGTC 57.520 50.000 0.00 0.00 31.97 3.01
170 171 2.679059 CGATCCAGGATGCAACAGAAGT 60.679 50.000 6.70 0.00 31.97 3.01
171 172 1.938577 CGATCCAGGATGCAACAGAAG 59.061 52.381 6.70 0.00 31.97 2.85
172 173 1.554617 TCGATCCAGGATGCAACAGAA 59.445 47.619 6.70 0.00 31.97 3.02
173 174 1.194218 TCGATCCAGGATGCAACAGA 58.806 50.000 6.70 0.00 31.97 3.41
174 175 1.938577 CTTCGATCCAGGATGCAACAG 59.061 52.381 6.70 0.00 31.97 3.16
175 176 1.554617 TCTTCGATCCAGGATGCAACA 59.445 47.619 6.70 0.00 31.97 3.33
176 177 2.315925 TCTTCGATCCAGGATGCAAC 57.684 50.000 6.70 0.00 31.97 4.17
177 178 3.470709 GAATCTTCGATCCAGGATGCAA 58.529 45.455 6.70 0.00 31.97 4.08
178 179 3.117491 GAATCTTCGATCCAGGATGCA 57.883 47.619 6.70 0.00 31.97 3.96
203 204 6.472163 GCATAATGCTTGTACATAGCGTTTTT 59.528 34.615 27.24 18.60 43.40 1.94
204 205 5.971202 GCATAATGCTTGTACATAGCGTTTT 59.029 36.000 27.24 21.23 43.40 2.43
205 206 5.065859 TGCATAATGCTTGTACATAGCGTTT 59.934 36.000 27.24 21.07 43.40 3.60
206 207 4.574421 TGCATAATGCTTGTACATAGCGTT 59.426 37.500 26.21 26.21 46.50 4.84
207 208 4.024893 GTGCATAATGCTTGTACATAGCGT 60.025 41.667 18.69 16.87 45.31 5.07
208 209 4.457810 GTGCATAATGCTTGTACATAGCG 58.542 43.478 18.69 9.74 45.31 4.26
209 210 4.457810 CGTGCATAATGCTTGTACATAGC 58.542 43.478 17.75 17.75 45.31 2.97
210 211 4.457810 GCGTGCATAATGCTTGTACATAG 58.542 43.478 0.00 0.00 45.31 2.23
211 212 4.466567 GCGTGCATAATGCTTGTACATA 57.533 40.909 0.00 0.00 45.31 2.29
212 213 3.338818 GCGTGCATAATGCTTGTACAT 57.661 42.857 0.00 0.00 45.31 2.29
213 214 2.823196 GCGTGCATAATGCTTGTACA 57.177 45.000 0.00 0.00 45.31 2.90
220 221 5.451908 ACAACAATATAGCGTGCATAATGC 58.548 37.500 0.00 0.00 45.29 3.56
221 222 6.657888 TGACAACAATATAGCGTGCATAATG 58.342 36.000 0.00 0.00 0.00 1.90
222 223 6.859420 TGACAACAATATAGCGTGCATAAT 57.141 33.333 0.00 0.00 0.00 1.28
223 224 6.859420 ATGACAACAATATAGCGTGCATAA 57.141 33.333 0.00 0.00 0.00 1.90
224 225 7.954788 TTATGACAACAATATAGCGTGCATA 57.045 32.000 0.00 0.00 0.00 3.14
225 226 6.859420 TTATGACAACAATATAGCGTGCAT 57.141 33.333 0.00 0.00 0.00 3.96
226 227 6.315144 AGTTTATGACAACAATATAGCGTGCA 59.685 34.615 0.00 0.00 0.00 4.57
227 228 6.715464 AGTTTATGACAACAATATAGCGTGC 58.285 36.000 0.00 0.00 0.00 5.34
228 229 8.175069 ACAAGTTTATGACAACAATATAGCGTG 58.825 33.333 0.00 0.00 0.00 5.34
229 230 8.263940 ACAAGTTTATGACAACAATATAGCGT 57.736 30.769 0.00 0.00 0.00 5.07
230 231 8.604035 AGACAAGTTTATGACAACAATATAGCG 58.396 33.333 0.00 0.00 0.00 4.26
268 269 9.690913 TGGAGAAGAAATGATTCATATTGACTT 57.309 29.630 0.00 2.37 38.06 3.01
269 270 9.690913 TTGGAGAAGAAATGATTCATATTGACT 57.309 29.630 0.00 0.00 38.06 3.41
284 285 9.333724 ACTCGTATAAAAAGTTTGGAGAAGAAA 57.666 29.630 0.00 0.00 0.00 2.52
285 286 8.897872 ACTCGTATAAAAAGTTTGGAGAAGAA 57.102 30.769 0.00 0.00 0.00 2.52
286 287 9.415544 GTACTCGTATAAAAAGTTTGGAGAAGA 57.584 33.333 0.00 0.00 0.00 2.87
287 288 9.199982 TGTACTCGTATAAAAAGTTTGGAGAAG 57.800 33.333 0.00 0.00 0.00 2.85
288 289 9.545105 TTGTACTCGTATAAAAAGTTTGGAGAA 57.455 29.630 0.00 0.00 0.00 2.87
289 290 9.715121 ATTGTACTCGTATAAAAAGTTTGGAGA 57.285 29.630 0.00 0.00 0.00 3.71
304 305 9.463443 CAAACATGATCAGATATTGTACTCGTA 57.537 33.333 0.00 0.00 0.00 3.43
305 306 8.197439 TCAAACATGATCAGATATTGTACTCGT 58.803 33.333 0.00 0.00 0.00 4.18
306 307 8.579682 TCAAACATGATCAGATATTGTACTCG 57.420 34.615 0.00 0.00 0.00 4.18
310 311 9.850198 TGGAATCAAACATGATCAGATATTGTA 57.150 29.630 0.00 0.00 0.00 2.41
311 312 8.756486 TGGAATCAAACATGATCAGATATTGT 57.244 30.769 0.00 0.00 0.00 2.71
377 378 1.944024 CGCACCCTATATGCCGAAAAA 59.056 47.619 0.00 0.00 40.09 1.94
378 379 1.588674 CGCACCCTATATGCCGAAAA 58.411 50.000 0.00 0.00 40.09 2.29
379 380 0.882927 GCGCACCCTATATGCCGAAA 60.883 55.000 0.30 0.00 40.09 3.46
380 381 1.301401 GCGCACCCTATATGCCGAA 60.301 57.895 0.30 0.00 40.09 4.30
381 382 2.342279 GCGCACCCTATATGCCGA 59.658 61.111 0.30 0.00 40.09 5.54
382 383 3.112075 CGCGCACCCTATATGCCG 61.112 66.667 8.75 0.00 40.09 5.69
383 384 2.742372 CCGCGCACCCTATATGCC 60.742 66.667 8.75 0.00 40.09 4.40
384 385 2.162338 TACCCGCGCACCCTATATGC 62.162 60.000 8.75 0.00 39.81 3.14
385 386 0.389426 GTACCCGCGCACCCTATATG 60.389 60.000 8.75 0.00 0.00 1.78
386 387 1.538687 GGTACCCGCGCACCCTATAT 61.539 60.000 8.75 0.00 0.00 0.86
387 388 2.202395 GGTACCCGCGCACCCTATA 61.202 63.158 8.75 0.00 0.00 1.31
388 389 3.543641 GGTACCCGCGCACCCTAT 61.544 66.667 8.75 0.00 0.00 2.57
401 402 0.320697 AACTTGGTGCTCTCGGGTAC 59.679 55.000 0.00 0.00 0.00 3.34
402 403 0.606604 GAACTTGGTGCTCTCGGGTA 59.393 55.000 0.00 0.00 0.00 3.69
403 404 1.371558 GAACTTGGTGCTCTCGGGT 59.628 57.895 0.00 0.00 0.00 5.28
404 405 1.738099 CGAACTTGGTGCTCTCGGG 60.738 63.158 0.00 0.00 0.00 5.14
405 406 2.383527 GCGAACTTGGTGCTCTCGG 61.384 63.158 0.00 0.00 0.00 4.63
406 407 2.720758 CGCGAACTTGGTGCTCTCG 61.721 63.158 0.00 0.00 0.00 4.04
407 408 3.016474 GCGCGAACTTGGTGCTCTC 62.016 63.158 12.10 0.00 37.89 3.20
408 409 3.044305 GCGCGAACTTGGTGCTCT 61.044 61.111 12.10 0.00 37.89 4.09
409 410 4.090057 GGCGCGAACTTGGTGCTC 62.090 66.667 12.10 0.00 40.61 4.26
412 413 3.055719 ATGGGCGCGAACTTGGTG 61.056 61.111 12.10 0.00 0.00 4.17
413 414 3.055719 CATGGGCGCGAACTTGGT 61.056 61.111 12.10 0.00 0.00 3.67
414 415 3.814268 CCATGGGCGCGAACTTGG 61.814 66.667 12.10 15.26 0.00 3.61
415 416 2.625823 AACCATGGGCGCGAACTTG 61.626 57.895 18.09 9.80 0.00 3.16
416 417 2.282180 AACCATGGGCGCGAACTT 60.282 55.556 18.09 0.00 0.00 2.66
417 418 3.055719 CAACCATGGGCGCGAACT 61.056 61.111 18.09 0.00 0.00 3.01
418 419 4.114997 CCAACCATGGGCGCGAAC 62.115 66.667 18.09 0.74 43.51 3.95
427 428 4.160065 TCATGCAAAATAGACCCAACCATG 59.840 41.667 0.00 0.00 0.00 3.66
428 429 4.352009 TCATGCAAAATAGACCCAACCAT 58.648 39.130 0.00 0.00 0.00 3.55
429 430 3.772387 TCATGCAAAATAGACCCAACCA 58.228 40.909 0.00 0.00 0.00 3.67
430 431 4.021544 TGTTCATGCAAAATAGACCCAACC 60.022 41.667 0.00 0.00 0.00 3.77
431 432 4.923281 GTGTTCATGCAAAATAGACCCAAC 59.077 41.667 0.00 0.00 0.00 3.77
432 433 4.586421 TGTGTTCATGCAAAATAGACCCAA 59.414 37.500 0.00 0.00 0.00 4.12
433 434 4.022416 GTGTGTTCATGCAAAATAGACCCA 60.022 41.667 0.00 0.00 0.00 4.51
434 435 4.218417 AGTGTGTTCATGCAAAATAGACCC 59.782 41.667 0.00 0.00 0.00 4.46
435 436 5.376854 AGTGTGTTCATGCAAAATAGACC 57.623 39.130 0.00 0.00 0.00 3.85
436 437 6.898041 TGTAGTGTGTTCATGCAAAATAGAC 58.102 36.000 0.00 0.00 0.00 2.59
437 438 7.361971 CCATGTAGTGTGTTCATGCAAAATAGA 60.362 37.037 0.00 0.00 37.99 1.98
438 439 6.748658 CCATGTAGTGTGTTCATGCAAAATAG 59.251 38.462 0.00 0.00 37.99 1.73
439 440 6.432472 TCCATGTAGTGTGTTCATGCAAAATA 59.568 34.615 0.00 0.00 37.99 1.40
440 441 5.243507 TCCATGTAGTGTGTTCATGCAAAAT 59.756 36.000 0.00 0.00 37.99 1.82
441 442 4.582240 TCCATGTAGTGTGTTCATGCAAAA 59.418 37.500 0.00 0.00 37.99 2.44
442 443 4.140536 TCCATGTAGTGTGTTCATGCAAA 58.859 39.130 0.00 0.00 37.99 3.68
443 444 3.749226 TCCATGTAGTGTGTTCATGCAA 58.251 40.909 0.00 0.00 37.99 4.08
444 445 3.415457 TCCATGTAGTGTGTTCATGCA 57.585 42.857 0.00 0.00 37.99 3.96
445 446 4.970662 ATTCCATGTAGTGTGTTCATGC 57.029 40.909 0.00 0.00 37.99 4.06
446 447 6.808212 GGAAAATTCCATGTAGTGTGTTCATG 59.192 38.462 7.32 0.00 46.76 3.07
447 448 6.924111 GGAAAATTCCATGTAGTGTGTTCAT 58.076 36.000 7.32 0.00 46.76 2.57
448 449 6.325919 GGAAAATTCCATGTAGTGTGTTCA 57.674 37.500 7.32 0.00 46.76 3.18
456 457 7.366011 AAGGAGACCTAGGAAAATTCCATGTAG 60.366 40.741 17.98 7.31 40.84 2.74
457 458 6.447084 AAGGAGACCTAGGAAAATTCCATGTA 59.553 38.462 17.98 0.00 40.84 2.29
458 459 5.254032 AAGGAGACCTAGGAAAATTCCATGT 59.746 40.000 17.98 7.75 40.84 3.21
459 460 5.760131 AAGGAGACCTAGGAAAATTCCATG 58.240 41.667 17.98 6.28 40.84 3.66
460 461 6.011628 TCAAAGGAGACCTAGGAAAATTCCAT 60.012 38.462 17.98 4.90 40.84 3.41
461 462 5.312178 TCAAAGGAGACCTAGGAAAATTCCA 59.688 40.000 17.98 0.47 40.84 3.53
462 463 5.816682 TCAAAGGAGACCTAGGAAAATTCC 58.183 41.667 17.98 13.65 39.45 3.01
463 464 6.151312 GGTTCAAAGGAGACCTAGGAAAATTC 59.849 42.308 17.98 1.34 31.07 2.17
464 465 6.010850 GGTTCAAAGGAGACCTAGGAAAATT 58.989 40.000 17.98 0.35 31.07 1.82
465 466 5.074515 TGGTTCAAAGGAGACCTAGGAAAAT 59.925 40.000 17.98 0.00 31.07 1.82
466 467 4.414182 TGGTTCAAAGGAGACCTAGGAAAA 59.586 41.667 17.98 0.00 31.07 2.29
467 468 3.977999 TGGTTCAAAGGAGACCTAGGAAA 59.022 43.478 17.98 0.00 31.07 3.13
468 469 3.326880 GTGGTTCAAAGGAGACCTAGGAA 59.673 47.826 17.98 0.00 31.13 3.36
469 470 2.904434 GTGGTTCAAAGGAGACCTAGGA 59.096 50.000 17.98 0.00 31.13 2.94
470 471 2.907042 AGTGGTTCAAAGGAGACCTAGG 59.093 50.000 7.41 7.41 31.13 3.02
471 472 4.202367 ACAAGTGGTTCAAAGGAGACCTAG 60.202 45.833 0.00 0.00 31.13 3.02
472 473 3.714798 ACAAGTGGTTCAAAGGAGACCTA 59.285 43.478 0.00 0.00 31.13 3.08
473 474 2.509964 ACAAGTGGTTCAAAGGAGACCT 59.490 45.455 0.00 0.00 33.87 3.85
474 475 2.932261 ACAAGTGGTTCAAAGGAGACC 58.068 47.619 0.00 0.00 0.00 3.85
475 476 5.008712 CCTTTACAAGTGGTTCAAAGGAGAC 59.991 44.000 6.18 0.00 45.29 3.36
476 477 5.130350 CCTTTACAAGTGGTTCAAAGGAGA 58.870 41.667 6.18 0.00 45.29 3.71
477 478 4.278419 CCCTTTACAAGTGGTTCAAAGGAG 59.722 45.833 12.04 1.52 45.29 3.69
478 479 4.079672 TCCCTTTACAAGTGGTTCAAAGGA 60.080 41.667 12.04 0.00 45.29 3.36
479 480 4.211920 TCCCTTTACAAGTGGTTCAAAGG 58.788 43.478 5.29 5.29 43.15 3.11
480 481 4.278419 CCTCCCTTTACAAGTGGTTCAAAG 59.722 45.833 0.00 0.00 0.00 2.77
481 482 4.211920 CCTCCCTTTACAAGTGGTTCAAA 58.788 43.478 0.00 0.00 0.00 2.69
482 483 3.203487 ACCTCCCTTTACAAGTGGTTCAA 59.797 43.478 0.00 0.00 0.00 2.69
483 484 2.781174 ACCTCCCTTTACAAGTGGTTCA 59.219 45.455 0.00 0.00 0.00 3.18
484 485 3.146847 CACCTCCCTTTACAAGTGGTTC 58.853 50.000 0.00 0.00 0.00 3.62
485 486 2.512476 ACACCTCCCTTTACAAGTGGTT 59.488 45.455 0.00 0.00 0.00 3.67
486 487 2.132686 ACACCTCCCTTTACAAGTGGT 58.867 47.619 0.00 0.00 0.00 4.16
487 488 2.951229 ACACCTCCCTTTACAAGTGG 57.049 50.000 0.00 0.00 0.00 4.00
488 489 3.146847 GGAACACCTCCCTTTACAAGTG 58.853 50.000 0.00 0.00 38.44 3.16
489 490 3.053826 AGGAACACCTCCCTTTACAAGT 58.946 45.455 0.00 0.00 46.81 3.16
490 491 3.790089 AGGAACACCTCCCTTTACAAG 57.210 47.619 0.00 0.00 46.81 3.16
491 492 4.661709 ACTTAGGAACACCTCCCTTTACAA 59.338 41.667 0.00 0.00 46.81 2.41
492 493 4.237018 ACTTAGGAACACCTCCCTTTACA 58.763 43.478 0.00 0.00 46.81 2.41
493 494 4.531339 AGACTTAGGAACACCTCCCTTTAC 59.469 45.833 0.00 0.00 46.81 2.01
494 495 4.759953 AGACTTAGGAACACCTCCCTTTA 58.240 43.478 0.00 0.00 46.81 1.85
495 496 3.583526 GAGACTTAGGAACACCTCCCTTT 59.416 47.826 0.00 0.00 46.81 3.11
496 497 3.174779 GAGACTTAGGAACACCTCCCTT 58.825 50.000 0.00 0.00 46.81 3.95
497 498 2.560158 GGAGACTTAGGAACACCTCCCT 60.560 54.545 0.00 0.00 46.81 4.20
498 499 1.832366 GGAGACTTAGGAACACCTCCC 59.168 57.143 0.00 0.00 46.81 4.30
499 500 2.822697 AGGAGACTTAGGAACACCTCC 58.177 52.381 0.00 0.00 41.20 4.30
513 514 6.790285 TTTCCACATACGTAAAAAGGAGAC 57.210 37.500 0.00 0.00 0.00 3.36
522 523 5.531659 TGGCTTTCTTTTTCCACATACGTAA 59.468 36.000 0.00 0.00 0.00 3.18
523 524 5.064558 TGGCTTTCTTTTTCCACATACGTA 58.935 37.500 0.00 0.00 0.00 3.57
524 525 3.886505 TGGCTTTCTTTTTCCACATACGT 59.113 39.130 0.00 0.00 0.00 3.57
525 526 4.497473 TGGCTTTCTTTTTCCACATACG 57.503 40.909 0.00 0.00 0.00 3.06
526 527 7.154656 AGATTTGGCTTTCTTTTTCCACATAC 58.845 34.615 0.00 0.00 0.00 2.39
545 546 2.493547 GGGGAGCCCGAAAGATTTG 58.506 57.895 0.00 0.00 36.85 2.32
564 565 5.483685 TTATGATAGTGCGGCCTTAAGAT 57.516 39.130 3.36 0.00 0.00 2.40
570 571 5.187772 TGATAGATTTATGATAGTGCGGCCT 59.812 40.000 0.00 0.00 0.00 5.19
572 573 6.368791 TGTTGATAGATTTATGATAGTGCGGC 59.631 38.462 0.00 0.00 0.00 6.53
587 588 9.461312 TTGTAGGTTAAGCATTTGTTGATAGAT 57.539 29.630 7.52 0.00 0.00 1.98
593 594 7.867403 ACATCTTTGTAGGTTAAGCATTTGTTG 59.133 33.333 7.52 0.00 33.16 3.33
633 1039 5.856126 TGAAATGTTAGTGACCATTCGAC 57.144 39.130 0.00 0.00 0.00 4.20
663 1070 4.524316 TTCTTTTGACTCATTGGCCATG 57.476 40.909 6.09 7.61 0.00 3.66
671 1078 6.226052 GGCCTTGAAATTTCTTTTGACTCAT 58.774 36.000 18.64 0.00 0.00 2.90
684 1091 7.607250 TCAACATTTTATACGGCCTTGAAATT 58.393 30.769 0.00 0.00 0.00 1.82
693 1100 6.020678 GCAGACATTTCAACATTTTATACGGC 60.021 38.462 0.00 0.00 0.00 5.68
696 1103 6.472163 CCGGCAGACATTTCAACATTTTATAC 59.528 38.462 0.00 0.00 0.00 1.47
744 1151 2.267642 CGAGATGCCAAACCCGGA 59.732 61.111 0.73 0.00 0.00 5.14
781 1188 3.593442 TCCAACTTGGATTCCACTTGT 57.407 42.857 4.45 2.23 42.67 3.16
852 1300 5.121925 ACGTGTATACAGTCGCTATAGGATG 59.878 44.000 5.62 1.89 0.00 3.51
896 1362 0.179000 GCGGGGCCATGATATCTAGG 59.821 60.000 4.39 6.94 0.00 3.02
985 1455 2.092968 ACGGCATAAGAAGATGAAGCCA 60.093 45.455 0.00 0.00 40.58 4.75
986 1456 2.289002 CACGGCATAAGAAGATGAAGCC 59.711 50.000 0.00 0.00 37.32 4.35
1014 1484 3.050275 GTGACACGAGGGCTTGGC 61.050 66.667 0.00 0.00 0.00 4.52
1015 1485 1.071471 AAGTGACACGAGGGCTTGG 59.929 57.895 0.00 0.00 0.00 3.61
1016 1486 1.845809 GCAAGTGACACGAGGGCTTG 61.846 60.000 0.00 0.00 39.40 4.01
1017 1487 1.598130 GCAAGTGACACGAGGGCTT 60.598 57.895 0.00 0.00 0.00 4.35
1020 1490 0.668706 CAGAGCAAGTGACACGAGGG 60.669 60.000 0.00 0.00 0.00 4.30
1043 1520 3.057596 GGGAGATAGAACAGAGCAGATCG 60.058 52.174 0.00 0.00 0.00 3.69
1044 1521 3.258123 GGGGAGATAGAACAGAGCAGATC 59.742 52.174 0.00 0.00 0.00 2.75
1045 1522 3.116784 AGGGGAGATAGAACAGAGCAGAT 60.117 47.826 0.00 0.00 0.00 2.90
1046 1523 2.246067 AGGGGAGATAGAACAGAGCAGA 59.754 50.000 0.00 0.00 0.00 4.26
1047 1524 2.676748 AGGGGAGATAGAACAGAGCAG 58.323 52.381 0.00 0.00 0.00 4.24
1059 1536 4.540099 TCTTGAATGTTTGGTAGGGGAGAT 59.460 41.667 0.00 0.00 0.00 2.75
1067 1544 5.116180 CGCCTATCTCTTGAATGTTTGGTA 58.884 41.667 0.00 0.00 0.00 3.25
1070 1547 3.242870 GGCGCCTATCTCTTGAATGTTTG 60.243 47.826 22.15 0.00 0.00 2.93
1072 1549 2.565841 GGCGCCTATCTCTTGAATGTT 58.434 47.619 22.15 0.00 0.00 2.71
1073 1550 1.202698 GGGCGCCTATCTCTTGAATGT 60.203 52.381 28.56 0.00 0.00 2.71
1074 1551 1.517242 GGGCGCCTATCTCTTGAATG 58.483 55.000 28.56 0.00 0.00 2.67
1075 1552 0.034059 CGGGCGCCTATCTCTTGAAT 59.966 55.000 28.56 0.00 0.00 2.57
1076 1553 1.441729 CGGGCGCCTATCTCTTGAA 59.558 57.895 28.56 0.00 0.00 2.69
1077 1554 3.129300 CGGGCGCCTATCTCTTGA 58.871 61.111 28.56 0.00 0.00 3.02
1350 2032 0.684153 TAAGTTAGGGGACGGACGGG 60.684 60.000 0.00 0.00 0.00 5.28
1427 2109 0.457035 CACCAGCCCAATTCAATCCG 59.543 55.000 0.00 0.00 0.00 4.18
2485 3184 1.068055 GCGTCCTCGTCCTTGAAGTAA 60.068 52.381 0.00 0.00 39.49 2.24
2988 3765 3.885521 GGCGCTGCAGATCAAGCC 61.886 66.667 20.43 18.38 39.97 4.35
3012 3789 3.839654 CAGACATGCCAATGCGATC 57.160 52.632 0.00 0.00 41.78 3.69
3038 3815 2.294979 CAGGCTTGCTGAATGCTGATA 58.705 47.619 0.00 0.00 43.37 2.15
3087 3868 1.008881 GACATGCATCATGCCTGCG 60.009 57.895 14.28 0.00 44.80 5.18
3091 3872 0.178998 AGGGAGACATGCATCATGCC 60.179 55.000 7.30 0.00 44.80 4.40
3116 3897 3.873952 GGGTGCTCTCATTTCTCACATAC 59.126 47.826 0.00 0.00 0.00 2.39
3172 3997 8.736244 ACATACGTATTTGCAAATTCCTAGTTT 58.264 29.630 28.45 13.60 0.00 2.66
3173 3998 8.181573 CACATACGTATTTGCAAATTCCTAGTT 58.818 33.333 28.45 6.44 0.00 2.24
3174 3999 7.551262 TCACATACGTATTTGCAAATTCCTAGT 59.449 33.333 28.45 20.85 0.00 2.57
3175 4000 7.850982 GTCACATACGTATTTGCAAATTCCTAG 59.149 37.037 28.45 16.99 0.00 3.02
3176 4001 7.551262 AGTCACATACGTATTTGCAAATTCCTA 59.449 33.333 28.45 17.29 0.00 2.94
3177 4002 6.374333 AGTCACATACGTATTTGCAAATTCCT 59.626 34.615 28.45 15.81 0.00 3.36
3178 4003 6.468956 CAGTCACATACGTATTTGCAAATTCC 59.531 38.462 28.45 18.08 0.00 3.01
3179 4004 7.240674 TCAGTCACATACGTATTTGCAAATTC 58.759 34.615 28.45 21.98 0.00 2.17
3180 4005 7.139896 TCAGTCACATACGTATTTGCAAATT 57.860 32.000 28.45 14.26 0.00 1.82
3181 4006 6.735678 TCAGTCACATACGTATTTGCAAAT 57.264 33.333 26.72 26.72 0.00 2.32
3182 4007 6.546972 TTCAGTCACATACGTATTTGCAAA 57.453 33.333 15.44 15.44 0.00 3.68
3183 4008 6.203915 ACTTTCAGTCACATACGTATTTGCAA 59.796 34.615 15.38 0.00 0.00 4.08
3184 4009 5.699001 ACTTTCAGTCACATACGTATTTGCA 59.301 36.000 15.38 3.92 0.00 4.08
3185 4010 6.165659 ACTTTCAGTCACATACGTATTTGC 57.834 37.500 15.38 11.05 0.00 3.68
3199 4024 4.025647 CGGTTCAGTTTCAGACTTTCAGTC 60.026 45.833 0.00 0.00 45.38 3.51
3200 4025 3.871594 CGGTTCAGTTTCAGACTTTCAGT 59.128 43.478 0.00 0.00 36.10 3.41
3201 4026 4.119862 TCGGTTCAGTTTCAGACTTTCAG 58.880 43.478 0.00 0.00 36.10 3.02
3202 4027 4.119862 CTCGGTTCAGTTTCAGACTTTCA 58.880 43.478 0.00 0.00 36.10 2.69
3203 4028 4.369182 TCTCGGTTCAGTTTCAGACTTTC 58.631 43.478 0.00 0.00 36.10 2.62
3204 4029 4.402056 TCTCGGTTCAGTTTCAGACTTT 57.598 40.909 0.00 0.00 36.10 2.66
3205 4030 4.402056 TTCTCGGTTCAGTTTCAGACTT 57.598 40.909 0.00 0.00 36.10 3.01
3206 4031 4.608948 ATTCTCGGTTCAGTTTCAGACT 57.391 40.909 0.00 0.00 39.89 3.24
3207 4032 5.348997 CCTAATTCTCGGTTCAGTTTCAGAC 59.651 44.000 0.00 0.00 0.00 3.51
3208 4033 5.479306 CCTAATTCTCGGTTCAGTTTCAGA 58.521 41.667 0.00 0.00 0.00 3.27
3209 4034 4.093556 GCCTAATTCTCGGTTCAGTTTCAG 59.906 45.833 0.00 0.00 0.00 3.02
3210 4035 4.000988 GCCTAATTCTCGGTTCAGTTTCA 58.999 43.478 0.00 0.00 0.00 2.69
3211 4036 3.374367 GGCCTAATTCTCGGTTCAGTTTC 59.626 47.826 0.00 0.00 0.00 2.78
3212 4037 3.344515 GGCCTAATTCTCGGTTCAGTTT 58.655 45.455 0.00 0.00 0.00 2.66
3213 4038 2.677037 CGGCCTAATTCTCGGTTCAGTT 60.677 50.000 0.00 0.00 0.00 3.16
3363 4203 1.199789 GGTGAATCAGAAATGCGCACA 59.800 47.619 14.90 0.00 0.00 4.57
3364 4204 1.470098 AGGTGAATCAGAAATGCGCAC 59.530 47.619 14.90 0.00 0.00 5.34
3365 4205 1.825090 AGGTGAATCAGAAATGCGCA 58.175 45.000 14.96 14.96 0.00 6.09
3367 4207 4.437930 GGAGAAAGGTGAATCAGAAATGCG 60.438 45.833 0.00 0.00 0.00 4.73
3368 4208 4.704057 AGGAGAAAGGTGAATCAGAAATGC 59.296 41.667 0.00 0.00 0.00 3.56
3369 4209 5.942236 TGAGGAGAAAGGTGAATCAGAAATG 59.058 40.000 0.00 0.00 0.00 2.32
3370 4210 6.131972 TGAGGAGAAAGGTGAATCAGAAAT 57.868 37.500 0.00 0.00 0.00 2.17
3373 4213 4.533707 ACATGAGGAGAAAGGTGAATCAGA 59.466 41.667 0.00 0.00 0.00 3.27
3375 4215 4.533707 AGACATGAGGAGAAAGGTGAATCA 59.466 41.667 0.00 0.00 0.00 2.57
3377 4217 4.841422 CAGACATGAGGAGAAAGGTGAAT 58.159 43.478 0.00 0.00 0.00 2.57
3378 4218 3.557898 GCAGACATGAGGAGAAAGGTGAA 60.558 47.826 0.00 0.00 0.00 3.18
3379 4219 2.027745 GCAGACATGAGGAGAAAGGTGA 60.028 50.000 0.00 0.00 0.00 4.02
3380 4220 2.027377 AGCAGACATGAGGAGAAAGGTG 60.027 50.000 0.00 0.00 0.00 4.00
3381 4221 2.264455 AGCAGACATGAGGAGAAAGGT 58.736 47.619 0.00 0.00 0.00 3.50
3390 4230 3.055530 ACTGAACCCTAAGCAGACATGAG 60.056 47.826 0.00 0.00 33.94 2.90
3395 4235 2.338500 CGAACTGAACCCTAAGCAGAC 58.662 52.381 0.00 0.00 33.94 3.51
3403 4243 1.944430 GCGAAATCCGAACTGAACCCT 60.944 52.381 0.00 0.00 41.76 4.34
3414 4254 1.654105 GGATAGCATACGCGAAATCCG 59.346 52.381 15.93 0.00 45.49 4.18
3424 4264 5.533482 AGACACGATGAAAGGATAGCATAC 58.467 41.667 0.00 0.00 0.00 2.39
3433 4273 6.015504 CGAATTACAAAGACACGATGAAAGG 58.984 40.000 0.00 0.00 0.00 3.11
3464 4304 3.485463 TCAAATCTTCAGGTTCGGTGT 57.515 42.857 0.00 0.00 0.00 4.16
3478 4318 9.458374 TTTACTTTTCGAAATGGAGTTCAAATC 57.542 29.630 23.03 0.00 0.00 2.17
3518 4358 1.061799 GCTCATGTTCAACGCTTGCG 61.062 55.000 13.70 13.70 0.00 4.85
3578 4418 4.202295 GATGGAATCATACAGAGCACTGGA 60.202 45.833 15.83 7.39 44.79 3.86
3602 4442 1.003223 GGTTCTTACTTTGCAACGCGT 60.003 47.619 5.58 5.58 0.00 6.01
3631 4471 2.076863 GGGGTCTTTGACGTCATTCAG 58.923 52.381 20.80 15.35 32.65 3.02
3668 4508 0.887933 GAAAGGCGGAAGGATGCAAA 59.112 50.000 0.00 0.00 0.00 3.68


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.