Multiple sequence alignment - TraesCS2D01G557300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G557300 chr2D 100.000 3549 0 0 1 3549 630349943 630346395 0.000000e+00 6554.0
1 TraesCS2D01G557300 chr2D 90.157 955 51 13 2619 3549 62065529 62066464 0.000000e+00 1203.0
2 TraesCS2D01G557300 chr2D 92.237 541 36 1 2620 3154 113483193 113482653 0.000000e+00 761.0
3 TraesCS2D01G557300 chr2D 96.399 361 12 1 1 360 597705274 597705634 8.480000e-166 593.0
4 TraesCS2D01G557300 chr2D 94.475 362 19 1 1 361 638541792 638541431 1.110000e-154 556.0
5 TraesCS2D01G557300 chr2D 83.178 107 18 0 670 776 2956435 2956329 8.110000e-17 99.0
6 TraesCS2D01G557300 chr2A 94.168 1852 88 13 766 2601 760551994 760550147 0.000000e+00 2804.0
7 TraesCS2D01G557300 chr2A 79.176 461 50 21 779 1196 760564564 760564107 9.700000e-71 278.0
8 TraesCS2D01G557300 chr2A 91.758 182 15 0 362 543 760552476 760552295 1.640000e-63 254.0
9 TraesCS2D01G557300 chr2A 95.333 150 5 1 458 607 760552173 760552026 1.650000e-58 237.0
10 TraesCS2D01G557300 chr2A 100.000 31 0 0 640 670 760552025 760551995 1.380000e-04 58.4
11 TraesCS2D01G557300 chr2B 91.075 1860 103 28 781 2601 773090442 773088607 0.000000e+00 2457.0
12 TraesCS2D01G557300 chr2B 85.145 276 29 7 401 667 773090717 773090445 4.510000e-69 272.0
13 TraesCS2D01G557300 chr7D 91.432 957 42 13 2620 3549 445905237 445906180 0.000000e+00 1277.0
14 TraesCS2D01G557300 chr7D 92.844 545 31 6 2616 3154 116127772 116128314 0.000000e+00 784.0
15 TraesCS2D01G557300 chr7D 91.525 413 26 1 3146 3549 116128361 116128773 8.600000e-156 560.0
16 TraesCS2D01G557300 chr7D 94.490 363 18 2 1 361 3449765 3449403 3.090000e-155 558.0
17 TraesCS2D01G557300 chr7D 89.926 407 14 8 3146 3549 557947826 557947444 1.900000e-137 499.0
18 TraesCS2D01G557300 chr7D 83.763 388 60 3 3164 3549 66594363 66594749 7.240000e-97 364.0
19 TraesCS2D01G557300 chr7D 80.296 406 72 8 3147 3549 429073238 429073638 2.070000e-77 300.0
20 TraesCS2D01G557300 chr7D 87.368 95 12 0 666 760 62261043 62261137 3.750000e-20 110.0
21 TraesCS2D01G557300 chr3B 93.161 541 31 1 2620 3154 730173055 730173595 0.000000e+00 789.0
22 TraesCS2D01G557300 chr3B 94.022 368 20 2 1 366 707455829 707455462 1.110000e-154 556.0
23 TraesCS2D01G557300 chr3B 86.139 404 43 6 3146 3549 488547873 488548263 1.180000e-114 424.0
24 TraesCS2D01G557300 chr3B 81.233 373 50 7 1142 1514 572078028 572077676 2.090000e-72 283.0
25 TraesCS2D01G557300 chr3B 88.281 128 15 0 1309 1436 83330622 83330495 1.710000e-33 154.0
26 TraesCS2D01G557300 chr1D 93.161 541 31 1 2620 3154 474017247 474017787 0.000000e+00 789.0
27 TraesCS2D01G557300 chr1D 85.468 406 53 6 3146 3549 382776902 382776501 5.480000e-113 418.0
28 TraesCS2D01G557300 chr7A 93.135 539 32 5 2620 3154 679239875 679240412 0.000000e+00 785.0
29 TraesCS2D01G557300 chr3A 92.579 539 32 3 2622 3154 741736678 741737214 0.000000e+00 767.0
30 TraesCS2D01G557300 chr3A 89.851 404 26 1 3146 3549 741737242 741737630 4.090000e-139 505.0
31 TraesCS2D01G557300 chr5D 92.066 542 35 3 2620 3154 292684327 292683787 0.000000e+00 756.0
32 TraesCS2D01G557300 chr5D 93.827 405 22 3 3146 3549 292683746 292683344 1.090000e-169 606.0
33 TraesCS2D01G557300 chr5D 94.751 362 17 2 1 360 378851203 378851564 2.390000e-156 562.0
34 TraesCS2D01G557300 chr6D 95.304 362 15 2 1 360 876765 877126 1.110000e-159 573.0
35 TraesCS2D01G557300 chr6D 92.105 76 4 2 1441 1514 205266365 205266440 4.850000e-19 106.0
36 TraesCS2D01G557300 chr7B 94.580 369 17 3 1 366 739512738 739512370 5.140000e-158 568.0
37 TraesCS2D01G557300 chr7B 89.247 93 10 0 668 760 680913470 680913378 2.240000e-22 117.0
38 TraesCS2D01G557300 chr7B 87.629 97 12 0 664 760 693255220 693255316 2.900000e-21 113.0
39 TraesCS2D01G557300 chr6B 94.766 363 17 2 1 361 18530371 18530733 6.650000e-157 564.0
40 TraesCS2D01G557300 chrUn 94.751 362 17 2 1 360 16170496 16170135 2.390000e-156 562.0
41 TraesCS2D01G557300 chrUn 83.178 107 18 0 670 776 328262880 328262774 8.110000e-17 99.0
42 TraesCS2D01G557300 chr6A 93.005 386 26 1 3165 3549 171450911 171451296 2.390000e-156 562.0
43 TraesCS2D01G557300 chr4B 89.367 395 30 4 3128 3511 28948075 28947682 1.480000e-133 486.0
44 TraesCS2D01G557300 chr4B 87.778 90 11 0 671 760 364682611 364682700 4.850000e-19 106.0
45 TraesCS2D01G557300 chr5B 80.144 418 67 13 3143 3549 42740650 42740238 7.450000e-77 298.0
46 TraesCS2D01G557300 chr5B 88.043 92 11 0 669 760 50233983 50234074 3.750000e-20 110.0
47 TraesCS2D01G557300 chr3D 85.039 127 12 3 1142 1268 155157462 155157343 4.810000e-24 122.0
48 TraesCS2D01G557300 chr3D 88.372 86 10 0 669 754 5241416 5241501 1.740000e-18 104.0
49 TraesCS2D01G557300 chr5A 88.043 92 11 0 669 760 32129231 32129140 3.750000e-20 110.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G557300 chr2D 630346395 630349943 3548 True 6554.00 6554 100.00000 1 3549 1 chr2D.!!$R3 3548
1 TraesCS2D01G557300 chr2D 62065529 62066464 935 False 1203.00 1203 90.15700 2619 3549 1 chr2D.!!$F1 930
2 TraesCS2D01G557300 chr2D 113482653 113483193 540 True 761.00 761 92.23700 2620 3154 1 chr2D.!!$R2 534
3 TraesCS2D01G557300 chr2A 760550147 760552476 2329 True 838.35 2804 95.31475 362 2601 4 chr2A.!!$R2 2239
4 TraesCS2D01G557300 chr2B 773088607 773090717 2110 True 1364.50 2457 88.11000 401 2601 2 chr2B.!!$R1 2200
5 TraesCS2D01G557300 chr7D 445905237 445906180 943 False 1277.00 1277 91.43200 2620 3549 1 chr7D.!!$F4 929
6 TraesCS2D01G557300 chr7D 116127772 116128773 1001 False 672.00 784 92.18450 2616 3549 2 chr7D.!!$F5 933
7 TraesCS2D01G557300 chr3B 730173055 730173595 540 False 789.00 789 93.16100 2620 3154 1 chr3B.!!$F2 534
8 TraesCS2D01G557300 chr1D 474017247 474017787 540 False 789.00 789 93.16100 2620 3154 1 chr1D.!!$F1 534
9 TraesCS2D01G557300 chr7A 679239875 679240412 537 False 785.00 785 93.13500 2620 3154 1 chr7A.!!$F1 534
10 TraesCS2D01G557300 chr3A 741736678 741737630 952 False 636.00 767 91.21500 2622 3549 2 chr3A.!!$F1 927
11 TraesCS2D01G557300 chr5D 292683344 292684327 983 True 681.00 756 92.94650 2620 3549 2 chr5D.!!$R1 929

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
150 151 0.034574 CCACCAATCGGGACCAATGA 60.035 55.0 0.00 0.0 41.15 2.57 F
226 227 0.036671 AAATCCAGACGAACCGGGAC 60.037 55.0 6.32 0.0 31.04 4.46 F
352 353 0.178932 GGACCAAAGCCCCCTTTTCT 60.179 55.0 0.00 0.0 39.20 2.52 F
1862 2124 0.318120 TCGTGAACATGCTCTGCTCA 59.682 50.0 0.00 0.0 0.00 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1635 1895 0.459063 GGTCCGACCGTTCCACATAC 60.459 60.000 0.65 0.0 0.00 2.39 R
2066 2328 1.073199 CGGGGTCAGCCACTTCTTT 59.927 57.895 0.00 0.0 35.54 2.52 R
2067 2329 2.113243 GACGGGGTCAGCCACTTCTT 62.113 60.000 0.00 0.0 33.98 2.52 R
2925 3203 0.248289 GACACCGATCGAAGGGGAAA 59.752 55.000 18.66 0.0 35.74 3.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.465446 CCTCCCCGGCCAGAGAGA 62.465 72.222 14.46 0.00 31.43 3.10
18 19 2.364317 CTCCCCGGCCAGAGAGAA 60.364 66.667 2.24 0.00 31.43 2.87
19 20 1.990060 CTCCCCGGCCAGAGAGAAA 60.990 63.158 2.24 0.00 31.43 2.52
20 21 2.245438 CTCCCCGGCCAGAGAGAAAC 62.245 65.000 2.24 0.00 31.43 2.78
21 22 2.592993 CCCCGGCCAGAGAGAAACA 61.593 63.158 2.24 0.00 0.00 2.83
22 23 1.078848 CCCGGCCAGAGAGAAACAG 60.079 63.158 2.24 0.00 0.00 3.16
23 24 1.544825 CCCGGCCAGAGAGAAACAGA 61.545 60.000 2.24 0.00 0.00 3.41
24 25 0.108424 CCGGCCAGAGAGAAACAGAG 60.108 60.000 2.24 0.00 0.00 3.35
25 26 0.739112 CGGCCAGAGAGAAACAGAGC 60.739 60.000 2.24 0.00 0.00 4.09
26 27 0.322975 GGCCAGAGAGAAACAGAGCA 59.677 55.000 0.00 0.00 0.00 4.26
27 28 1.437625 GCCAGAGAGAAACAGAGCAC 58.562 55.000 0.00 0.00 0.00 4.40
28 29 1.001860 GCCAGAGAGAAACAGAGCACT 59.998 52.381 0.00 0.00 0.00 4.40
42 43 4.594367 CACTGGAGTGCTCTGCTC 57.406 61.111 8.78 0.00 39.39 4.26
43 44 1.445754 CACTGGAGTGCTCTGCTCG 60.446 63.158 8.78 2.80 39.39 5.03
44 45 2.508887 CTGGAGTGCTCTGCTCGC 60.509 66.667 8.78 0.00 34.00 5.03
45 46 4.426112 TGGAGTGCTCTGCTCGCG 62.426 66.667 0.00 0.00 34.00 5.87
58 59 4.584518 TCGCGGGCGAGGGGTATA 62.585 66.667 12.26 0.00 44.01 1.47
59 60 3.379445 CGCGGGCGAGGGGTATAT 61.379 66.667 7.38 0.00 42.83 0.86
60 61 2.048023 CGCGGGCGAGGGGTATATA 61.048 63.158 7.38 0.00 42.83 0.86
61 62 1.389609 CGCGGGCGAGGGGTATATAT 61.390 60.000 7.38 0.00 42.83 0.86
62 63 1.696063 GCGGGCGAGGGGTATATATA 58.304 55.000 0.00 0.00 0.00 0.86
63 64 1.612463 GCGGGCGAGGGGTATATATAG 59.388 57.143 0.00 0.00 0.00 1.31
64 65 2.236766 CGGGCGAGGGGTATATATAGG 58.763 57.143 0.00 0.00 0.00 2.57
65 66 1.969208 GGGCGAGGGGTATATATAGGC 59.031 57.143 0.00 0.00 0.00 3.93
66 67 1.612463 GGCGAGGGGTATATATAGGCG 59.388 57.143 0.00 0.00 0.00 5.52
67 68 1.000496 GCGAGGGGTATATATAGGCGC 60.000 57.143 0.00 0.00 35.08 6.53
68 69 1.612463 CGAGGGGTATATATAGGCGCC 59.388 57.143 21.89 21.89 0.00 6.53
69 70 2.752154 CGAGGGGTATATATAGGCGCCT 60.752 54.545 34.85 34.85 45.16 5.52
70 71 2.960163 AGGGGTATATATAGGCGCCTC 58.040 52.381 36.73 17.12 39.62 4.70
71 72 2.246588 AGGGGTATATATAGGCGCCTCA 59.753 50.000 36.73 23.29 39.62 3.86
72 73 3.036091 GGGGTATATATAGGCGCCTCAA 58.964 50.000 36.73 23.23 0.00 3.02
73 74 3.646637 GGGGTATATATAGGCGCCTCAAT 59.353 47.826 36.73 28.13 0.00 2.57
74 75 4.503296 GGGGTATATATAGGCGCCTCAATG 60.503 50.000 36.73 0.00 0.00 2.82
75 76 4.503296 GGGTATATATAGGCGCCTCAATGG 60.503 50.000 36.73 0.00 39.35 3.16
76 77 4.101119 GGTATATATAGGCGCCTCAATGGT 59.899 45.833 36.73 20.65 38.35 3.55
77 78 2.770164 ATATAGGCGCCTCAATGGTC 57.230 50.000 36.73 0.00 38.35 4.02
78 79 0.685097 TATAGGCGCCTCAATGGTCC 59.315 55.000 36.73 0.00 38.35 4.46
79 80 2.056906 ATAGGCGCCTCAATGGTCCC 62.057 60.000 36.73 0.00 38.35 4.46
82 83 4.096003 CGCCTCAATGGTCCCGGT 62.096 66.667 0.00 0.00 38.35 5.28
83 84 2.355115 GCCTCAATGGTCCCGGTT 59.645 61.111 0.00 0.00 38.35 4.44
84 85 1.749258 GCCTCAATGGTCCCGGTTC 60.749 63.158 0.00 0.00 38.35 3.62
85 86 1.449601 CCTCAATGGTCCCGGTTCG 60.450 63.158 0.00 0.00 0.00 3.95
86 87 1.295423 CTCAATGGTCCCGGTTCGT 59.705 57.895 0.00 0.00 0.00 3.85
87 88 1.004320 TCAATGGTCCCGGTTCGTG 60.004 57.895 0.00 0.00 0.00 4.35
88 89 2.038269 CAATGGTCCCGGTTCGTGG 61.038 63.158 0.00 0.00 0.00 4.94
89 90 3.912745 AATGGTCCCGGTTCGTGGC 62.913 63.158 0.00 0.00 0.00 5.01
102 103 4.309950 GTGGCACGAACCGGGACT 62.310 66.667 6.32 0.00 40.06 3.85
103 104 2.601067 TGGCACGAACCGGGACTA 60.601 61.111 6.32 0.00 40.06 2.59
104 105 2.208619 TGGCACGAACCGGGACTAA 61.209 57.895 6.32 0.00 40.06 2.24
105 106 1.004679 GGCACGAACCGGGACTAAA 60.005 57.895 6.32 0.00 34.24 1.85
106 107 1.017701 GGCACGAACCGGGACTAAAG 61.018 60.000 6.32 0.00 34.24 1.85
107 108 1.017701 GCACGAACCGGGACTAAAGG 61.018 60.000 6.32 0.00 28.17 3.11
108 109 0.390735 CACGAACCGGGACTAAAGGG 60.391 60.000 6.32 0.00 28.17 3.95
109 110 1.449070 CGAACCGGGACTAAAGGGC 60.449 63.158 6.32 0.00 0.00 5.19
110 111 1.681076 GAACCGGGACTAAAGGGCA 59.319 57.895 6.32 0.00 0.00 5.36
111 112 0.392595 GAACCGGGACTAAAGGGCAG 60.393 60.000 6.32 0.00 0.00 4.85
112 113 2.124695 CCGGGACTAAAGGGCAGC 60.125 66.667 0.00 0.00 0.00 5.25
113 114 2.124695 CGGGACTAAAGGGCAGCC 60.125 66.667 1.26 1.26 0.00 4.85
114 115 2.670148 CGGGACTAAAGGGCAGCCT 61.670 63.158 12.43 0.00 0.00 4.58
115 116 1.077429 GGGACTAAAGGGCAGCCTG 60.077 63.158 12.43 0.00 0.00 4.85
116 117 1.685820 GGACTAAAGGGCAGCCTGT 59.314 57.895 12.43 2.90 0.00 4.00
117 118 0.038310 GGACTAAAGGGCAGCCTGTT 59.962 55.000 12.43 8.36 0.00 3.16
118 119 1.168714 GACTAAAGGGCAGCCTGTTG 58.831 55.000 12.43 0.54 0.00 3.33
119 120 0.478507 ACTAAAGGGCAGCCTGTTGT 59.521 50.000 12.43 1.19 0.00 3.32
120 121 1.168714 CTAAAGGGCAGCCTGTTGTC 58.831 55.000 12.43 0.00 0.00 3.18
121 122 0.251165 TAAAGGGCAGCCTGTTGTCC 60.251 55.000 12.43 0.00 43.30 4.02
122 123 3.513750 AAGGGCAGCCTGTTGTCCC 62.514 63.158 12.43 3.63 44.04 4.46
125 126 4.643387 GCAGCCTGTTGTCCCGGT 62.643 66.667 0.00 0.00 0.00 5.28
126 127 2.113139 CAGCCTGTTGTCCCGGTT 59.887 61.111 0.00 0.00 0.00 4.44
127 128 1.966451 CAGCCTGTTGTCCCGGTTC 60.966 63.158 0.00 0.00 0.00 3.62
128 129 2.112297 GCCTGTTGTCCCGGTTCA 59.888 61.111 0.00 0.00 0.00 3.18
129 130 1.527380 GCCTGTTGTCCCGGTTCAA 60.527 57.895 0.00 2.23 0.00 2.69
130 131 1.515521 GCCTGTTGTCCCGGTTCAAG 61.516 60.000 0.00 0.00 0.00 3.02
131 132 1.515521 CCTGTTGTCCCGGTTCAAGC 61.516 60.000 0.00 1.86 0.00 4.01
132 133 1.515521 CTGTTGTCCCGGTTCAAGCC 61.516 60.000 0.00 0.00 0.00 4.35
133 134 1.527380 GTTGTCCCGGTTCAAGCCA 60.527 57.895 0.00 0.00 0.00 4.75
134 135 1.527380 TTGTCCCGGTTCAAGCCAC 60.527 57.895 0.00 0.00 0.00 5.01
135 136 2.671963 GTCCCGGTTCAAGCCACC 60.672 66.667 0.00 0.00 0.00 4.61
136 137 3.172106 TCCCGGTTCAAGCCACCA 61.172 61.111 0.00 0.00 33.36 4.17
137 138 2.203422 CCCGGTTCAAGCCACCAA 60.203 61.111 0.00 0.00 33.36 3.67
138 139 1.606313 CCCGGTTCAAGCCACCAAT 60.606 57.895 0.00 0.00 33.36 3.16
139 140 1.595093 CCCGGTTCAAGCCACCAATC 61.595 60.000 0.00 0.00 33.36 2.67
140 141 1.501741 CGGTTCAAGCCACCAATCG 59.498 57.895 0.00 0.00 33.36 3.34
141 142 1.883021 GGTTCAAGCCACCAATCGG 59.117 57.895 0.00 0.00 34.04 4.18
142 143 1.595093 GGTTCAAGCCACCAATCGGG 61.595 60.000 0.00 0.00 44.81 5.14
143 144 0.608035 GTTCAAGCCACCAATCGGGA 60.608 55.000 0.00 0.00 41.15 5.14
144 145 0.608035 TTCAAGCCACCAATCGGGAC 60.608 55.000 0.00 0.00 41.15 4.46
145 146 2.046285 CAAGCCACCAATCGGGACC 61.046 63.158 0.00 0.00 41.15 4.46
146 147 2.534396 AAGCCACCAATCGGGACCA 61.534 57.895 0.00 0.00 41.15 4.02
147 148 2.034999 GCCACCAATCGGGACCAA 59.965 61.111 0.00 0.00 41.15 3.67
148 149 1.379843 GCCACCAATCGGGACCAAT 60.380 57.895 0.00 0.00 41.15 3.16
149 150 1.666209 GCCACCAATCGGGACCAATG 61.666 60.000 0.00 0.00 41.15 2.82
150 151 0.034574 CCACCAATCGGGACCAATGA 60.035 55.000 0.00 0.00 41.15 2.57
151 152 1.410083 CCACCAATCGGGACCAATGAT 60.410 52.381 0.00 0.00 41.15 2.45
152 153 1.677576 CACCAATCGGGACCAATGATG 59.322 52.381 0.00 0.00 41.15 3.07
153 154 1.410083 ACCAATCGGGACCAATGATGG 60.410 52.381 0.00 0.00 46.38 3.51
174 175 2.679716 GCCAGGAGCCAGGTTCAT 59.320 61.111 5.55 0.00 34.35 2.57
175 176 1.000396 GCCAGGAGCCAGGTTCATT 60.000 57.895 5.55 0.00 34.35 2.57
176 177 1.318158 GCCAGGAGCCAGGTTCATTG 61.318 60.000 5.55 3.14 34.35 2.82
177 178 0.682209 CCAGGAGCCAGGTTCATTGG 60.682 60.000 5.55 8.45 38.78 3.16
178 179 0.038744 CAGGAGCCAGGTTCATTGGT 59.961 55.000 5.55 0.00 38.02 3.67
179 180 0.329596 AGGAGCCAGGTTCATTGGTC 59.670 55.000 5.55 0.00 38.02 4.02
180 181 0.681243 GGAGCCAGGTTCATTGGTCC 60.681 60.000 5.55 0.00 38.02 4.46
181 182 0.681243 GAGCCAGGTTCATTGGTCCC 60.681 60.000 0.00 0.00 38.02 4.46
182 183 2.046285 GCCAGGTTCATTGGTCCCG 61.046 63.158 0.00 0.00 38.02 5.14
183 184 1.378514 CCAGGTTCATTGGTCCCGG 60.379 63.158 0.00 0.00 0.00 5.73
184 185 1.378762 CAGGTTCATTGGTCCCGGT 59.621 57.895 0.00 0.00 0.00 5.28
185 186 0.251165 CAGGTTCATTGGTCCCGGTT 60.251 55.000 0.00 0.00 0.00 4.44
186 187 0.037734 AGGTTCATTGGTCCCGGTTC 59.962 55.000 0.00 0.00 0.00 3.62
187 188 1.303091 GGTTCATTGGTCCCGGTTCG 61.303 60.000 0.00 0.00 0.00 3.95
188 189 0.604511 GTTCATTGGTCCCGGTTCGT 60.605 55.000 0.00 0.00 0.00 3.85
189 190 0.320946 TTCATTGGTCCCGGTTCGTC 60.321 55.000 0.00 0.00 0.00 4.20
190 191 1.743995 CATTGGTCCCGGTTCGTCC 60.744 63.158 0.00 0.00 0.00 4.79
191 192 2.963101 ATTGGTCCCGGTTCGTCCC 61.963 63.158 0.00 0.00 0.00 4.46
192 193 4.938074 TGGTCCCGGTTCGTCCCA 62.938 66.667 0.00 0.00 0.00 4.37
193 194 4.383861 GGTCCCGGTTCGTCCCAC 62.384 72.222 0.00 0.00 0.00 4.61
194 195 4.383861 GTCCCGGTTCGTCCCACC 62.384 72.222 0.00 0.00 0.00 4.61
195 196 4.938074 TCCCGGTTCGTCCCACCA 62.938 66.667 0.00 0.00 33.36 4.17
196 197 3.943691 CCCGGTTCGTCCCACCAA 61.944 66.667 0.00 0.00 33.36 3.67
197 198 2.667199 CCGGTTCGTCCCACCAAC 60.667 66.667 0.00 0.00 33.36 3.77
198 199 2.667199 CGGTTCGTCCCACCAACC 60.667 66.667 0.00 0.00 36.91 3.77
199 200 2.667199 GGTTCGTCCCACCAACCG 60.667 66.667 0.00 0.00 34.04 4.44
200 201 2.667199 GTTCGTCCCACCAACCGG 60.667 66.667 0.00 0.00 38.77 5.28
201 202 3.943691 TTCGTCCCACCAACCGGG 61.944 66.667 6.32 0.00 46.03 5.73
207 208 2.196229 CCACCAACCGGGACCAAA 59.804 61.111 6.32 0.00 41.15 3.28
208 209 1.455959 CCACCAACCGGGACCAAAA 60.456 57.895 6.32 0.00 41.15 2.44
209 210 1.043673 CCACCAACCGGGACCAAAAA 61.044 55.000 6.32 0.00 41.15 1.94
210 211 1.044611 CACCAACCGGGACCAAAAAT 58.955 50.000 6.32 0.00 41.15 1.82
211 212 1.000394 CACCAACCGGGACCAAAAATC 60.000 52.381 6.32 0.00 41.15 2.17
212 213 0.606096 CCAACCGGGACCAAAAATCC 59.394 55.000 6.32 0.00 40.01 3.01
213 214 1.333177 CAACCGGGACCAAAAATCCA 58.667 50.000 6.32 0.00 38.06 3.41
214 215 1.272212 CAACCGGGACCAAAAATCCAG 59.728 52.381 6.32 0.00 38.06 3.86
215 216 0.774908 ACCGGGACCAAAAATCCAGA 59.225 50.000 6.32 0.00 38.06 3.86
216 217 1.173913 CCGGGACCAAAAATCCAGAC 58.826 55.000 0.00 0.00 38.06 3.51
217 218 0.802494 CGGGACCAAAAATCCAGACG 59.198 55.000 0.00 0.00 38.06 4.18
218 219 1.609580 CGGGACCAAAAATCCAGACGA 60.610 52.381 0.00 0.00 38.06 4.20
219 220 2.510613 GGGACCAAAAATCCAGACGAA 58.489 47.619 0.00 0.00 38.06 3.85
220 221 2.228103 GGGACCAAAAATCCAGACGAAC 59.772 50.000 0.00 0.00 38.06 3.95
221 222 2.228103 GGACCAAAAATCCAGACGAACC 59.772 50.000 0.00 0.00 36.15 3.62
222 223 1.877443 ACCAAAAATCCAGACGAACCG 59.123 47.619 0.00 0.00 0.00 4.44
223 224 1.199097 CCAAAAATCCAGACGAACCGG 59.801 52.381 0.00 0.00 0.00 5.28
224 225 1.199097 CAAAAATCCAGACGAACCGGG 59.801 52.381 6.32 0.00 0.00 5.73
225 226 0.688487 AAAATCCAGACGAACCGGGA 59.312 50.000 6.32 0.00 0.00 5.14
226 227 0.036671 AAATCCAGACGAACCGGGAC 60.037 55.000 6.32 0.00 31.04 4.46
227 228 1.896122 AATCCAGACGAACCGGGACC 61.896 60.000 6.32 0.00 31.04 4.46
228 229 3.307906 CCAGACGAACCGGGACCA 61.308 66.667 6.32 0.00 0.00 4.02
229 230 2.738480 CAGACGAACCGGGACCAA 59.262 61.111 6.32 0.00 0.00 3.67
230 231 1.295423 CAGACGAACCGGGACCAAT 59.705 57.895 6.32 0.00 0.00 3.16
231 232 1.019278 CAGACGAACCGGGACCAATG 61.019 60.000 6.32 0.00 0.00 2.82
232 233 1.743995 GACGAACCGGGACCAATGG 60.744 63.158 6.32 0.00 0.00 3.16
233 234 3.131478 CGAACCGGGACCAATGGC 61.131 66.667 6.32 0.00 0.00 4.40
234 235 2.355115 GAACCGGGACCAATGGCT 59.645 61.111 6.32 0.00 0.00 4.75
235 236 1.749258 GAACCGGGACCAATGGCTC 60.749 63.158 6.32 0.00 0.00 4.70
236 237 2.478335 GAACCGGGACCAATGGCTCA 62.478 60.000 6.32 0.00 0.00 4.26
237 238 2.438434 CCGGGACCAATGGCTCAC 60.438 66.667 0.00 0.00 0.00 3.51
238 239 2.819595 CGGGACCAATGGCTCACG 60.820 66.667 10.95 10.95 0.00 4.35
239 240 2.351276 GGGACCAATGGCTCACGT 59.649 61.111 0.00 0.00 0.00 4.49
240 241 2.040544 GGGACCAATGGCTCACGTG 61.041 63.158 9.94 9.94 0.00 4.49
241 242 2.040544 GGACCAATGGCTCACGTGG 61.041 63.158 17.00 7.71 0.00 4.94
242 243 2.672996 ACCAATGGCTCACGTGGC 60.673 61.111 17.00 17.27 0.00 5.01
268 269 2.276740 CCCCCTGGGCTCATGAAC 59.723 66.667 7.39 0.00 35.35 3.18
269 270 2.276740 CCCCTGGGCTCATGAACC 59.723 66.667 7.39 6.60 0.00 3.62
270 271 2.124570 CCCTGGGCTCATGAACCG 60.125 66.667 9.03 5.35 0.00 4.44
271 272 2.124570 CCTGGGCTCATGAACCGG 60.125 66.667 15.05 15.05 0.00 5.28
272 273 2.124570 CTGGGCTCATGAACCGGG 60.125 66.667 6.32 0.00 0.00 5.73
273 274 2.933287 TGGGCTCATGAACCGGGT 60.933 61.111 6.32 0.00 0.00 5.28
274 275 2.124695 GGGCTCATGAACCGGGTC 60.125 66.667 14.24 14.24 0.00 4.46
275 276 2.124695 GGCTCATGAACCGGGTCC 60.125 66.667 19.01 0.00 0.00 4.46
276 277 2.668632 GCTCATGAACCGGGTCCA 59.331 61.111 19.01 5.46 0.00 4.02
277 278 1.002624 GCTCATGAACCGGGTCCAA 60.003 57.895 19.01 0.00 0.00 3.53
278 279 0.394352 GCTCATGAACCGGGTCCAAT 60.394 55.000 19.01 0.74 0.00 3.16
279 280 1.382522 CTCATGAACCGGGTCCAATG 58.617 55.000 19.01 15.27 0.00 2.82
280 281 0.679640 TCATGAACCGGGTCCAATGC 60.680 55.000 19.01 0.00 0.00 3.56
281 282 1.379843 ATGAACCGGGTCCAATGCC 60.380 57.895 19.01 0.00 0.00 4.40
282 283 2.754254 GAACCGGGTCCAATGCCC 60.754 66.667 8.85 0.00 42.68 5.36
283 284 4.376170 AACCGGGTCCAATGCCCC 62.376 66.667 6.32 0.00 43.18 5.80
285 286 4.141876 CCGGGTCCAATGCCCCAT 62.142 66.667 0.00 0.00 43.18 4.00
286 287 2.834505 CGGGTCCAATGCCCCATG 60.835 66.667 6.95 0.00 43.18 3.66
287 288 2.444517 GGGTCCAATGCCCCATGG 60.445 66.667 4.14 4.14 40.88 3.66
289 290 2.364160 GTCCAATGCCCCATGGGT 59.636 61.111 29.33 8.46 46.51 4.51
290 291 1.758122 GTCCAATGCCCCATGGGTC 60.758 63.158 29.33 18.61 46.51 4.46
291 292 2.444517 CCAATGCCCCATGGGTCC 60.445 66.667 29.33 19.48 46.51 4.46
292 293 2.444517 CAATGCCCCATGGGTCCC 60.445 66.667 29.33 16.98 46.51 4.46
293 294 4.141876 AATGCCCCATGGGTCCCG 62.142 66.667 29.33 14.98 46.51 5.14
297 298 4.123545 CCCCATGGGTCCCGGTTC 62.124 72.222 29.33 0.00 38.25 3.62
298 299 3.015145 CCCATGGGTCCCGGTTCT 61.015 66.667 23.93 0.00 0.00 3.01
299 300 2.272146 CCATGGGTCCCGGTTCTG 59.728 66.667 2.85 0.00 0.00 3.02
300 301 2.272146 CATGGGTCCCGGTTCTGG 59.728 66.667 2.65 0.00 0.00 3.86
301 302 2.124085 ATGGGTCCCGGTTCTGGA 59.876 61.111 2.65 0.00 0.00 3.86
306 307 4.631493 TCCCGGTTCTGGACTGAA 57.369 55.556 0.00 0.00 36.72 3.02
307 308 2.055299 TCCCGGTTCTGGACTGAAC 58.945 57.895 12.04 12.04 43.88 3.18
311 312 4.695560 GTTCTGGACTGAACCGGG 57.304 61.111 6.32 0.00 40.10 5.73
312 313 2.055299 GTTCTGGACTGAACCGGGA 58.945 57.895 6.32 0.00 40.10 5.14
313 314 0.320508 GTTCTGGACTGAACCGGGAC 60.321 60.000 6.32 0.00 40.10 4.46
314 315 0.471211 TTCTGGACTGAACCGGGACT 60.471 55.000 6.32 0.00 36.97 3.85
315 316 0.406750 TCTGGACTGAACCGGGACTA 59.593 55.000 6.32 0.00 36.97 2.59
316 317 1.203087 TCTGGACTGAACCGGGACTAA 60.203 52.381 6.32 0.00 36.97 2.24
317 318 1.831736 CTGGACTGAACCGGGACTAAT 59.168 52.381 6.32 0.00 33.06 1.73
318 319 1.553248 TGGACTGAACCGGGACTAATG 59.447 52.381 6.32 0.00 0.00 1.90
319 320 1.134491 GGACTGAACCGGGACTAATGG 60.134 57.143 6.32 0.00 0.00 3.16
320 321 0.909623 ACTGAACCGGGACTAATGGG 59.090 55.000 6.32 0.00 0.00 4.00
321 322 0.463833 CTGAACCGGGACTAATGGGC 60.464 60.000 6.32 0.00 0.00 5.36
322 323 0.912487 TGAACCGGGACTAATGGGCT 60.912 55.000 6.32 0.00 0.00 5.19
323 324 0.463833 GAACCGGGACTAATGGGCTG 60.464 60.000 6.32 0.00 0.00 4.85
324 325 0.912487 AACCGGGACTAATGGGCTGA 60.912 55.000 6.32 0.00 0.00 4.26
325 326 1.146263 CCGGGACTAATGGGCTGAC 59.854 63.158 0.00 0.00 0.00 3.51
326 327 1.146263 CGGGACTAATGGGCTGACC 59.854 63.158 0.00 0.00 40.81 4.02
336 337 4.083862 GGCTGACCCGACCTGGAC 62.084 72.222 0.00 0.00 42.00 4.02
337 338 4.083862 GCTGACCCGACCTGGACC 62.084 72.222 0.00 0.00 42.00 4.46
338 339 2.603473 CTGACCCGACCTGGACCA 60.603 66.667 0.00 0.00 42.00 4.02
339 340 2.122769 TGACCCGACCTGGACCAA 60.123 61.111 0.00 0.00 42.00 3.67
340 341 1.764571 CTGACCCGACCTGGACCAAA 61.765 60.000 0.00 0.00 42.00 3.28
341 342 1.003718 GACCCGACCTGGACCAAAG 60.004 63.158 0.00 0.00 42.00 2.77
342 343 2.359975 CCCGACCTGGACCAAAGC 60.360 66.667 0.00 0.00 42.00 3.51
343 344 2.359975 CCGACCTGGACCAAAGCC 60.360 66.667 0.00 0.00 42.00 4.35
344 345 2.359975 CGACCTGGACCAAAGCCC 60.360 66.667 0.00 0.00 0.00 5.19
345 346 2.035783 GACCTGGACCAAAGCCCC 59.964 66.667 0.00 0.00 0.00 5.80
346 347 3.585525 GACCTGGACCAAAGCCCCC 62.586 68.421 0.00 0.00 0.00 5.40
347 348 3.268032 CCTGGACCAAAGCCCCCT 61.268 66.667 0.00 0.00 0.00 4.79
348 349 2.854076 CTGGACCAAAGCCCCCTT 59.146 61.111 0.00 0.00 0.00 3.95
349 350 1.156095 CTGGACCAAAGCCCCCTTT 59.844 57.895 0.00 0.00 41.86 3.11
350 351 0.471780 CTGGACCAAAGCCCCCTTTT 60.472 55.000 0.00 0.00 39.20 2.27
351 352 0.471022 TGGACCAAAGCCCCCTTTTC 60.471 55.000 0.00 0.00 39.20 2.29
352 353 0.178932 GGACCAAAGCCCCCTTTTCT 60.179 55.000 0.00 0.00 39.20 2.52
353 354 1.076513 GGACCAAAGCCCCCTTTTCTA 59.923 52.381 0.00 0.00 39.20 2.10
354 355 2.168496 GACCAAAGCCCCCTTTTCTAC 58.832 52.381 0.00 0.00 39.20 2.59
355 356 1.787058 ACCAAAGCCCCCTTTTCTACT 59.213 47.619 0.00 0.00 39.20 2.57
356 357 2.990998 ACCAAAGCCCCCTTTTCTACTA 59.009 45.455 0.00 0.00 39.20 1.82
357 358 3.010250 ACCAAAGCCCCCTTTTCTACTAG 59.990 47.826 0.00 0.00 39.20 2.57
358 359 3.010250 CCAAAGCCCCCTTTTCTACTAGT 59.990 47.826 0.00 0.00 39.20 2.57
359 360 4.010349 CAAAGCCCCCTTTTCTACTAGTG 58.990 47.826 5.39 0.00 39.20 2.74
360 361 3.200958 AGCCCCCTTTTCTACTAGTGA 57.799 47.619 5.39 0.00 0.00 3.41
448 449 0.904865 ATGTCCTGGCTCCGTTGAGA 60.905 55.000 0.00 0.00 41.42 3.27
464 465 4.686972 GTTGAGAGATGGACGATGATGAA 58.313 43.478 0.00 0.00 0.00 2.57
469 477 4.648762 AGAGATGGACGATGATGAACTTCT 59.351 41.667 0.00 0.00 0.00 2.85
474 482 5.651530 TGGACGATGATGAACTTCTACTTC 58.348 41.667 0.00 0.00 0.00 3.01
487 702 6.006759 ACTTCTACTTCTTTCAATGCTTGC 57.993 37.500 0.00 0.00 0.00 4.01
622 837 0.396435 AAATCACGGAGCAGTCACCA 59.604 50.000 0.00 0.00 0.00 4.17
633 848 1.267806 GCAGTCACCACCTCATGTTTG 59.732 52.381 0.00 0.00 0.00 2.93
638 853 3.380004 GTCACCACCTCATGTTTGTTTCA 59.620 43.478 0.00 0.00 0.00 2.69
672 887 8.667592 ACAGAAGAAAATCCCTACTAGTACTT 57.332 34.615 0.00 0.00 0.00 2.24
673 888 8.751242 ACAGAAGAAAATCCCTACTAGTACTTC 58.249 37.037 0.00 13.67 0.00 3.01
674 889 8.198778 CAGAAGAAAATCCCTACTAGTACTTCC 58.801 40.741 16.19 5.31 33.11 3.46
675 890 8.123780 AGAAGAAAATCCCTACTAGTACTTCCT 58.876 37.037 16.19 6.78 33.11 3.36
676 891 7.901283 AGAAAATCCCTACTAGTACTTCCTC 57.099 40.000 0.00 0.00 0.00 3.71
677 892 6.840181 AGAAAATCCCTACTAGTACTTCCTCC 59.160 42.308 0.00 0.00 0.00 4.30
678 893 3.853355 TCCCTACTAGTACTTCCTCCG 57.147 52.381 0.00 0.00 0.00 4.63
679 894 3.118531 TCCCTACTAGTACTTCCTCCGT 58.881 50.000 0.00 0.00 0.00 4.69
680 895 3.525199 TCCCTACTAGTACTTCCTCCGTT 59.475 47.826 0.00 0.00 0.00 4.44
681 896 3.882288 CCCTACTAGTACTTCCTCCGTTC 59.118 52.174 0.00 0.00 0.00 3.95
683 898 4.575645 CCTACTAGTACTTCCTCCGTTCAG 59.424 50.000 0.00 0.00 0.00 3.02
684 899 4.298103 ACTAGTACTTCCTCCGTTCAGA 57.702 45.455 0.00 0.00 0.00 3.27
685 900 4.660168 ACTAGTACTTCCTCCGTTCAGAA 58.340 43.478 0.00 0.00 0.00 3.02
686 901 5.262804 ACTAGTACTTCCTCCGTTCAGAAT 58.737 41.667 0.00 0.00 0.00 2.40
687 902 5.715753 ACTAGTACTTCCTCCGTTCAGAATT 59.284 40.000 0.00 0.00 0.00 2.17
688 903 6.888632 ACTAGTACTTCCTCCGTTCAGAATTA 59.111 38.462 0.00 0.00 0.00 1.40
689 904 6.600882 AGTACTTCCTCCGTTCAGAATTAA 57.399 37.500 0.00 0.00 0.00 1.40
690 905 7.184067 AGTACTTCCTCCGTTCAGAATTAAT 57.816 36.000 0.00 0.00 0.00 1.40
691 906 7.621796 AGTACTTCCTCCGTTCAGAATTAATT 58.378 34.615 0.00 0.00 0.00 1.40
692 907 6.743575 ACTTCCTCCGTTCAGAATTAATTG 57.256 37.500 5.17 0.00 0.00 2.32
693 908 6.238648 ACTTCCTCCGTTCAGAATTAATTGT 58.761 36.000 5.17 0.00 0.00 2.71
694 909 6.715264 ACTTCCTCCGTTCAGAATTAATTGTT 59.285 34.615 5.17 0.00 0.00 2.83
695 910 7.881232 ACTTCCTCCGTTCAGAATTAATTGTTA 59.119 33.333 5.17 0.00 0.00 2.41
696 911 7.605410 TCCTCCGTTCAGAATTAATTGTTAC 57.395 36.000 5.17 1.83 0.00 2.50
697 912 7.162761 TCCTCCGTTCAGAATTAATTGTTACA 58.837 34.615 5.17 0.00 0.00 2.41
698 913 7.333423 TCCTCCGTTCAGAATTAATTGTTACAG 59.667 37.037 5.17 0.00 0.00 2.74
699 914 7.333423 CCTCCGTTCAGAATTAATTGTTACAGA 59.667 37.037 5.17 0.28 0.00 3.41
700 915 8.610248 TCCGTTCAGAATTAATTGTTACAGAA 57.390 30.769 5.17 0.00 0.00 3.02
701 916 9.058174 TCCGTTCAGAATTAATTGTTACAGAAA 57.942 29.630 5.17 0.00 0.00 2.52
702 917 9.840427 CCGTTCAGAATTAATTGTTACAGAAAT 57.160 29.630 5.17 0.00 0.00 2.17
717 932 9.093970 TGTTACAGAAATGGATGTATTTAGACG 57.906 33.333 0.00 0.00 32.24 4.18
718 933 9.095065 GTTACAGAAATGGATGTATTTAGACGT 57.905 33.333 0.00 0.00 32.24 4.34
721 936 9.832445 ACAGAAATGGATGTATTTAGACGTATT 57.168 29.630 0.00 0.00 30.78 1.89
754 969 9.798994 ATAGATACGTCTATTTTCGAAACAAGT 57.201 29.630 10.79 7.78 43.53 3.16
756 971 9.630098 AGATACGTCTATTTTCGAAACAAGTAA 57.370 29.630 10.79 0.00 31.36 2.24
760 975 8.767085 ACGTCTATTTTCGAAACAAGTAATTCA 58.233 29.630 10.79 0.00 0.00 2.57
761 976 9.250986 CGTCTATTTTCGAAACAAGTAATTCAG 57.749 33.333 10.79 0.00 0.00 3.02
762 977 9.543018 GTCTATTTTCGAAACAAGTAATTCAGG 57.457 33.333 10.79 0.00 0.00 3.86
763 978 8.726988 TCTATTTTCGAAACAAGTAATTCAGGG 58.273 33.333 10.79 0.00 0.00 4.45
764 979 4.759516 TTCGAAACAAGTAATTCAGGGC 57.240 40.909 0.00 0.00 0.00 5.19
765 980 2.739913 TCGAAACAAGTAATTCAGGGCG 59.260 45.455 0.00 0.00 0.00 6.13
766 981 2.482721 CGAAACAAGTAATTCAGGGCGT 59.517 45.455 0.00 0.00 0.00 5.68
767 982 3.680937 CGAAACAAGTAATTCAGGGCGTA 59.319 43.478 0.00 0.00 0.00 4.42
768 983 4.201685 CGAAACAAGTAATTCAGGGCGTAG 60.202 45.833 0.00 0.00 0.00 3.51
769 984 3.975168 ACAAGTAATTCAGGGCGTAGT 57.025 42.857 0.00 0.00 0.00 2.73
770 985 5.410355 AACAAGTAATTCAGGGCGTAGTA 57.590 39.130 0.00 0.00 0.00 1.82
771 986 5.410355 ACAAGTAATTCAGGGCGTAGTAA 57.590 39.130 0.00 0.00 0.00 2.24
772 987 5.416947 ACAAGTAATTCAGGGCGTAGTAAG 58.583 41.667 0.00 0.00 0.00 2.34
773 988 5.046807 ACAAGTAATTCAGGGCGTAGTAAGT 60.047 40.000 0.00 0.00 0.00 2.24
774 989 6.153340 ACAAGTAATTCAGGGCGTAGTAAGTA 59.847 38.462 0.00 0.00 0.00 2.24
775 990 6.973460 AGTAATTCAGGGCGTAGTAAGTAT 57.027 37.500 0.00 0.00 0.00 2.12
776 991 6.746120 AGTAATTCAGGGCGTAGTAAGTATG 58.254 40.000 0.00 0.00 0.00 2.39
777 992 4.602340 ATTCAGGGCGTAGTAAGTATGG 57.398 45.455 0.00 0.00 0.00 2.74
778 993 3.301794 TCAGGGCGTAGTAAGTATGGA 57.698 47.619 0.00 0.00 0.00 3.41
779 994 3.220110 TCAGGGCGTAGTAAGTATGGAG 58.780 50.000 0.00 0.00 0.00 3.86
800 1015 2.327200 ACCTTATTTCTGGCGCCTAC 57.673 50.000 29.70 0.50 0.00 3.18
804 1019 0.825410 TATTTCTGGCGCCTACCGAA 59.175 50.000 29.70 20.34 40.02 4.30
869 1085 2.799978 CCGGTAAAAGGCAAAGCAAAAG 59.200 45.455 0.00 0.00 0.00 2.27
870 1086 2.799978 CGGTAAAAGGCAAAGCAAAAGG 59.200 45.455 0.00 0.00 0.00 3.11
871 1087 2.548057 GGTAAAAGGCAAAGCAAAAGGC 59.452 45.455 0.00 0.00 45.30 4.35
1091 1342 4.100084 CCACCGCCTCAGATGCCA 62.100 66.667 0.00 0.00 0.00 4.92
1635 1895 2.278206 CCCGTCGACTGCATCTCG 60.278 66.667 14.70 7.45 0.00 4.04
1644 1904 2.479560 CGACTGCATCTCGTATGTGGAA 60.480 50.000 5.90 0.00 0.00 3.53
1647 1907 1.209128 GCATCTCGTATGTGGAACGG 58.791 55.000 0.00 0.00 42.39 4.44
1862 2124 0.318120 TCGTGAACATGCTCTGCTCA 59.682 50.000 0.00 0.00 0.00 4.26
1866 2128 1.551883 TGAACATGCTCTGCTCAGCTA 59.448 47.619 0.00 0.00 40.39 3.32
1867 2129 2.027837 TGAACATGCTCTGCTCAGCTAA 60.028 45.455 0.00 0.00 40.39 3.09
1868 2130 3.204526 GAACATGCTCTGCTCAGCTAAT 58.795 45.455 0.00 0.00 40.39 1.73
1870 2132 2.169978 ACATGCTCTGCTCAGCTAATCA 59.830 45.455 0.00 0.00 40.39 2.57
1871 2133 2.306341 TGCTCTGCTCAGCTAATCAC 57.694 50.000 0.00 0.00 40.39 3.06
1875 2137 3.740452 GCTCTGCTCAGCTAATCACATCA 60.740 47.826 0.00 0.00 36.38 3.07
2066 2328 4.124351 CGTCACCGCCGCCTTCTA 62.124 66.667 0.00 0.00 0.00 2.10
2067 2329 2.263540 GTCACCGCCGCCTTCTAA 59.736 61.111 0.00 0.00 0.00 2.10
2070 2332 1.079405 CACCGCCGCCTTCTAAAGA 60.079 57.895 0.00 0.00 0.00 2.52
2071 2333 0.672401 CACCGCCGCCTTCTAAAGAA 60.672 55.000 0.00 0.00 0.00 2.52
2104 2366 0.541998 TCACGGAGAGGCTCAAGGAA 60.542 55.000 18.26 0.00 31.08 3.36
2461 2723 4.003788 CAGGTCGTCTTGGCCGGT 62.004 66.667 1.90 0.00 0.00 5.28
2474 2736 2.107343 CCGGTGTGACGTGGTTCA 59.893 61.111 0.00 0.00 0.00 3.18
2482 2744 0.108377 TGACGTGGTTCATCATCGGG 60.108 55.000 0.00 0.00 0.00 5.14
2524 2786 0.111253 AGGTGGTGCTTGGAAGAAGG 59.889 55.000 0.00 0.00 0.00 3.46
2530 2792 1.531578 GTGCTTGGAAGAAGGAACGAC 59.468 52.381 0.00 0.00 0.00 4.34
2531 2793 1.157585 GCTTGGAAGAAGGAACGACC 58.842 55.000 0.00 0.00 39.35 4.79
2564 2827 0.734597 ATGAATGTGCACGCGACGTA 60.735 50.000 15.93 0.00 38.32 3.57
2602 2880 8.773404 ACAAAGCTGTAATTTGTAGTACTAGG 57.227 34.615 1.87 0.00 46.27 3.02
2603 2881 8.373220 ACAAAGCTGTAATTTGTAGTACTAGGT 58.627 33.333 1.87 0.00 46.27 3.08
2604 2882 9.865321 CAAAGCTGTAATTTGTAGTACTAGGTA 57.135 33.333 1.87 0.00 33.82 3.08
2611 2889 9.617975 GTAATTTGTAGTACTAGGTAATAGCCG 57.382 37.037 1.87 0.00 34.56 5.52
2612 2890 7.830099 ATTTGTAGTACTAGGTAATAGCCGT 57.170 36.000 1.87 0.00 34.56 5.68
2613 2891 6.624352 TTGTAGTACTAGGTAATAGCCGTG 57.376 41.667 1.87 0.00 34.56 4.94
2614 2892 4.516698 TGTAGTACTAGGTAATAGCCGTGC 59.483 45.833 1.87 0.00 34.56 5.34
2615 2893 2.551459 AGTACTAGGTAATAGCCGTGCG 59.449 50.000 0.00 0.00 34.56 5.34
2616 2894 1.396653 ACTAGGTAATAGCCGTGCGT 58.603 50.000 0.00 0.00 34.56 5.24
2617 2895 1.336125 ACTAGGTAATAGCCGTGCGTC 59.664 52.381 0.00 0.00 34.56 5.19
2658 2936 2.035632 TGGTTCAAAATTTGGCGGTCT 58.964 42.857 5.83 0.00 0.00 3.85
2848 3126 2.038269 GCCGCCTTCGTCAAATCCA 61.038 57.895 0.00 0.00 0.00 3.41
2919 3197 0.399806 GAGCTCCTCTCCCAATCCCT 60.400 60.000 0.87 0.00 35.77 4.20
2925 3203 4.238669 CTCCTCTCCCAATCCCTCTATTT 58.761 47.826 0.00 0.00 0.00 1.40
3215 3560 4.875713 GGCGCCGAATCCCACCAT 62.876 66.667 12.58 0.00 0.00 3.55
3525 3896 2.188469 GAGGCCGCGGTCCAAATA 59.812 61.111 31.19 0.00 0.00 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.984186 TTCTCTCTGGCCGGGGAGG 62.984 68.421 36.27 20.49 44.97 4.30
1 2 1.990060 TTTCTCTCTGGCCGGGGAG 60.990 63.158 32.88 32.88 0.00 4.30
2 3 2.121832 TTTCTCTCTGGCCGGGGA 59.878 61.111 15.16 15.16 0.00 4.81
3 4 2.269241 GTTTCTCTCTGGCCGGGG 59.731 66.667 12.87 8.98 0.00 5.73
4 5 1.078848 CTGTTTCTCTCTGGCCGGG 60.079 63.158 12.87 2.35 0.00 5.73
5 6 0.108424 CTCTGTTTCTCTCTGGCCGG 60.108 60.000 4.71 4.71 0.00 6.13
6 7 0.739112 GCTCTGTTTCTCTCTGGCCG 60.739 60.000 0.00 0.00 0.00 6.13
7 8 0.322975 TGCTCTGTTTCTCTCTGGCC 59.677 55.000 0.00 0.00 0.00 5.36
8 9 1.001860 AGTGCTCTGTTTCTCTCTGGC 59.998 52.381 0.00 0.00 0.00 4.85
9 10 2.612471 CCAGTGCTCTGTTTCTCTCTGG 60.612 54.545 14.31 0.00 39.82 3.86
10 11 2.298446 TCCAGTGCTCTGTTTCTCTCTG 59.702 50.000 14.31 0.00 39.82 3.35
11 12 2.562298 CTCCAGTGCTCTGTTTCTCTCT 59.438 50.000 14.31 0.00 39.82 3.10
12 13 2.298729 ACTCCAGTGCTCTGTTTCTCTC 59.701 50.000 14.31 0.00 39.82 3.20
13 14 2.036992 CACTCCAGTGCTCTGTTTCTCT 59.963 50.000 14.31 0.00 39.39 3.10
14 15 2.411904 CACTCCAGTGCTCTGTTTCTC 58.588 52.381 14.31 0.00 39.39 2.87
15 16 2.540265 CACTCCAGTGCTCTGTTTCT 57.460 50.000 14.31 0.00 39.39 2.52
26 27 2.969016 CGAGCAGAGCACTCCAGT 59.031 61.111 0.00 0.00 0.00 4.00
27 28 2.508887 GCGAGCAGAGCACTCCAG 60.509 66.667 0.00 0.00 34.19 3.86
28 29 4.426112 CGCGAGCAGAGCACTCCA 62.426 66.667 0.00 0.00 34.19 3.86
41 42 2.482796 TATATACCCCTCGCCCGCGA 62.483 60.000 8.23 11.79 46.87 5.87
42 43 1.389609 ATATATACCCCTCGCCCGCG 61.390 60.000 0.00 0.00 41.35 6.46
43 44 1.612463 CTATATATACCCCTCGCCCGC 59.388 57.143 0.00 0.00 0.00 6.13
44 45 2.236766 CCTATATATACCCCTCGCCCG 58.763 57.143 0.00 0.00 0.00 6.13
45 46 1.969208 GCCTATATATACCCCTCGCCC 59.031 57.143 0.00 0.00 0.00 6.13
46 47 1.612463 CGCCTATATATACCCCTCGCC 59.388 57.143 0.00 0.00 0.00 5.54
47 48 1.000496 GCGCCTATATATACCCCTCGC 60.000 57.143 0.00 0.00 0.00 5.03
48 49 1.612463 GGCGCCTATATATACCCCTCG 59.388 57.143 22.15 0.00 0.00 4.63
49 50 2.892215 GAGGCGCCTATATATACCCCTC 59.108 54.545 32.97 8.53 0.00 4.30
50 51 2.246588 TGAGGCGCCTATATATACCCCT 59.753 50.000 32.97 1.08 0.00 4.79
51 52 2.674420 TGAGGCGCCTATATATACCCC 58.326 52.381 32.97 13.59 0.00 4.95
52 53 4.503296 CCATTGAGGCGCCTATATATACCC 60.503 50.000 32.97 14.43 0.00 3.69
53 54 4.101119 ACCATTGAGGCGCCTATATATACC 59.899 45.833 32.97 15.25 43.14 2.73
54 55 5.277857 ACCATTGAGGCGCCTATATATAC 57.722 43.478 32.97 16.10 43.14 1.47
55 56 4.344102 GGACCATTGAGGCGCCTATATATA 59.656 45.833 32.97 11.51 43.14 0.86
56 57 3.134804 GGACCATTGAGGCGCCTATATAT 59.865 47.826 32.97 17.12 43.14 0.86
57 58 2.500098 GGACCATTGAGGCGCCTATATA 59.500 50.000 32.97 15.44 43.14 0.86
58 59 1.279271 GGACCATTGAGGCGCCTATAT 59.721 52.381 32.97 22.53 43.14 0.86
59 60 0.685097 GGACCATTGAGGCGCCTATA 59.315 55.000 32.97 21.14 43.14 1.31
60 61 1.451936 GGACCATTGAGGCGCCTAT 59.548 57.895 32.97 18.61 43.14 2.57
61 62 2.742116 GGGACCATTGAGGCGCCTA 61.742 63.158 32.97 16.75 43.14 3.93
62 63 4.115199 GGGACCATTGAGGCGCCT 62.115 66.667 33.48 33.48 43.14 5.52
65 66 3.622060 AACCGGGACCATTGAGGCG 62.622 63.158 6.32 0.00 43.14 5.52
66 67 1.749258 GAACCGGGACCATTGAGGC 60.749 63.158 6.32 0.00 43.14 4.70
67 68 1.449601 CGAACCGGGACCATTGAGG 60.450 63.158 6.32 0.00 45.67 3.86
68 69 1.019278 CACGAACCGGGACCATTGAG 61.019 60.000 6.32 0.00 28.17 3.02
69 70 1.004320 CACGAACCGGGACCATTGA 60.004 57.895 6.32 0.00 28.17 2.57
70 71 2.038269 CCACGAACCGGGACCATTG 61.038 63.158 6.32 0.00 28.17 2.82
71 72 2.349755 CCACGAACCGGGACCATT 59.650 61.111 6.32 0.00 28.17 3.16
72 73 4.404098 GCCACGAACCGGGACCAT 62.404 66.667 6.32 0.00 28.17 3.55
85 86 2.438951 TTAGTCCCGGTTCGTGCCAC 62.439 60.000 0.00 0.00 0.00 5.01
86 87 1.756408 TTTAGTCCCGGTTCGTGCCA 61.756 55.000 0.00 0.00 0.00 4.92
87 88 1.004679 TTTAGTCCCGGTTCGTGCC 60.005 57.895 0.00 0.00 0.00 5.01
88 89 1.017701 CCTTTAGTCCCGGTTCGTGC 61.018 60.000 0.00 0.00 0.00 5.34
89 90 0.390735 CCCTTTAGTCCCGGTTCGTG 60.391 60.000 0.00 0.00 0.00 4.35
90 91 1.977685 CCCTTTAGTCCCGGTTCGT 59.022 57.895 0.00 0.00 0.00 3.85
91 92 1.449070 GCCCTTTAGTCCCGGTTCG 60.449 63.158 0.00 0.00 0.00 3.95
92 93 0.392595 CTGCCCTTTAGTCCCGGTTC 60.393 60.000 0.00 0.00 0.00 3.62
93 94 1.683441 CTGCCCTTTAGTCCCGGTT 59.317 57.895 0.00 0.00 0.00 4.44
94 95 2.967946 GCTGCCCTTTAGTCCCGGT 61.968 63.158 0.00 0.00 0.00 5.28
95 96 2.124695 GCTGCCCTTTAGTCCCGG 60.125 66.667 0.00 0.00 0.00 5.73
96 97 2.124695 GGCTGCCCTTTAGTCCCG 60.125 66.667 7.66 0.00 0.00 5.14
97 98 1.077429 CAGGCTGCCCTTTAGTCCC 60.077 63.158 16.57 0.00 40.33 4.46
98 99 0.038310 AACAGGCTGCCCTTTAGTCC 59.962 55.000 16.57 0.00 40.33 3.85
99 100 1.168714 CAACAGGCTGCCCTTTAGTC 58.831 55.000 16.57 0.00 40.33 2.59
100 101 0.478507 ACAACAGGCTGCCCTTTAGT 59.521 50.000 16.57 5.30 40.33 2.24
101 102 1.168714 GACAACAGGCTGCCCTTTAG 58.831 55.000 16.57 4.61 40.33 1.85
102 103 0.251165 GGACAACAGGCTGCCCTTTA 60.251 55.000 16.57 0.00 40.33 1.85
103 104 1.531602 GGACAACAGGCTGCCCTTT 60.532 57.895 16.57 5.74 40.33 3.11
104 105 2.116125 GGACAACAGGCTGCCCTT 59.884 61.111 16.57 4.02 40.33 3.95
105 106 3.971702 GGGACAACAGGCTGCCCT 61.972 66.667 16.57 0.00 44.25 5.19
108 109 4.643387 ACCGGGACAACAGGCTGC 62.643 66.667 15.89 0.00 0.00 5.25
109 110 1.966451 GAACCGGGACAACAGGCTG 60.966 63.158 14.16 14.16 0.00 4.85
110 111 1.990160 TTGAACCGGGACAACAGGCT 61.990 55.000 6.32 0.00 0.00 4.58
111 112 1.515521 CTTGAACCGGGACAACAGGC 61.516 60.000 6.32 0.00 0.00 4.85
112 113 1.515521 GCTTGAACCGGGACAACAGG 61.516 60.000 6.32 1.61 0.00 4.00
113 114 1.515521 GGCTTGAACCGGGACAACAG 61.516 60.000 6.32 2.03 0.00 3.16
114 115 1.527380 GGCTTGAACCGGGACAACA 60.527 57.895 6.32 0.00 0.00 3.33
115 116 1.527380 TGGCTTGAACCGGGACAAC 60.527 57.895 6.32 6.65 0.00 3.32
116 117 1.527380 GTGGCTTGAACCGGGACAA 60.527 57.895 6.32 10.87 0.00 3.18
117 118 2.112297 GTGGCTTGAACCGGGACA 59.888 61.111 6.32 1.89 0.00 4.02
118 119 2.671963 GGTGGCTTGAACCGGGAC 60.672 66.667 6.32 0.00 0.00 4.46
119 120 2.075355 ATTGGTGGCTTGAACCGGGA 62.075 55.000 6.32 0.00 40.86 5.14
120 121 1.595093 GATTGGTGGCTTGAACCGGG 61.595 60.000 6.32 0.00 40.86 5.73
121 122 1.883021 GATTGGTGGCTTGAACCGG 59.117 57.895 0.00 0.00 40.86 5.28
122 123 1.501741 CGATTGGTGGCTTGAACCG 59.498 57.895 0.00 0.00 40.86 4.44
123 124 1.595093 CCCGATTGGTGGCTTGAACC 61.595 60.000 0.00 0.00 38.26 3.62
124 125 0.608035 TCCCGATTGGTGGCTTGAAC 60.608 55.000 0.00 0.00 34.77 3.18
125 126 0.608035 GTCCCGATTGGTGGCTTGAA 60.608 55.000 0.00 0.00 34.77 2.69
126 127 1.002624 GTCCCGATTGGTGGCTTGA 60.003 57.895 0.00 0.00 34.77 3.02
127 128 2.046285 GGTCCCGATTGGTGGCTTG 61.046 63.158 0.00 0.00 34.77 4.01
128 129 2.075355 TTGGTCCCGATTGGTGGCTT 62.075 55.000 0.00 0.00 34.77 4.35
129 130 1.863155 ATTGGTCCCGATTGGTGGCT 61.863 55.000 0.00 0.00 34.77 4.75
130 131 1.379843 ATTGGTCCCGATTGGTGGC 60.380 57.895 0.00 0.00 34.77 5.01
131 132 0.034574 TCATTGGTCCCGATTGGTGG 60.035 55.000 0.00 0.00 34.77 4.61
132 133 1.677576 CATCATTGGTCCCGATTGGTG 59.322 52.381 0.00 0.00 34.77 4.17
133 134 1.410083 CCATCATTGGTCCCGATTGGT 60.410 52.381 0.00 0.00 38.30 3.67
134 135 1.321474 CCATCATTGGTCCCGATTGG 58.679 55.000 0.00 0.00 38.30 3.16
157 158 1.000396 AATGAACCTGGCTCCTGGC 60.000 57.895 11.23 0.00 38.41 4.85
158 159 0.682209 CCAATGAACCTGGCTCCTGG 60.682 60.000 9.92 9.92 40.33 4.45
159 160 0.038744 ACCAATGAACCTGGCTCCTG 59.961 55.000 0.00 0.00 37.48 3.86
160 161 0.329596 GACCAATGAACCTGGCTCCT 59.670 55.000 0.00 0.00 37.48 3.69
161 162 0.681243 GGACCAATGAACCTGGCTCC 60.681 60.000 0.00 0.00 37.48 4.70
162 163 0.681243 GGGACCAATGAACCTGGCTC 60.681 60.000 0.00 0.00 37.48 4.70
163 164 1.384191 GGGACCAATGAACCTGGCT 59.616 57.895 0.00 0.00 37.48 4.75
164 165 2.046285 CGGGACCAATGAACCTGGC 61.046 63.158 0.00 0.00 37.48 4.85
165 166 1.378514 CCGGGACCAATGAACCTGG 60.379 63.158 8.56 8.56 42.70 4.45
166 167 0.251165 AACCGGGACCAATGAACCTG 60.251 55.000 6.32 0.00 0.00 4.00
167 168 0.037734 GAACCGGGACCAATGAACCT 59.962 55.000 6.32 0.00 0.00 3.50
168 169 1.303091 CGAACCGGGACCAATGAACC 61.303 60.000 6.32 0.00 0.00 3.62
169 170 0.604511 ACGAACCGGGACCAATGAAC 60.605 55.000 6.32 0.00 0.00 3.18
170 171 0.320946 GACGAACCGGGACCAATGAA 60.321 55.000 6.32 0.00 0.00 2.57
171 172 1.294138 GACGAACCGGGACCAATGA 59.706 57.895 6.32 0.00 0.00 2.57
172 173 1.743995 GGACGAACCGGGACCAATG 60.744 63.158 6.32 0.00 0.00 2.82
173 174 2.666812 GGACGAACCGGGACCAAT 59.333 61.111 6.32 0.00 0.00 3.16
174 175 3.628982 GGGACGAACCGGGACCAA 61.629 66.667 6.32 0.00 40.11 3.67
175 176 4.938074 TGGGACGAACCGGGACCA 62.938 66.667 6.32 1.29 40.11 4.02
176 177 4.383861 GTGGGACGAACCGGGACC 62.384 72.222 6.32 0.00 40.11 4.46
177 178 4.383861 GGTGGGACGAACCGGGAC 62.384 72.222 6.32 0.00 40.11 4.46
178 179 4.938074 TGGTGGGACGAACCGGGA 62.938 66.667 6.32 0.00 40.86 5.14
179 180 3.943691 TTGGTGGGACGAACCGGG 61.944 66.667 6.32 0.00 40.86 5.73
180 181 2.667199 GTTGGTGGGACGAACCGG 60.667 66.667 0.00 0.00 40.86 5.28
181 182 2.667199 GGTTGGTGGGACGAACCG 60.667 66.667 5.08 0.00 44.79 4.44
183 184 2.667199 CCGGTTGGTGGGACGAAC 60.667 66.667 0.00 0.00 36.30 3.95
190 191 1.043673 TTTTTGGTCCCGGTTGGTGG 61.044 55.000 0.00 0.00 34.77 4.61
191 192 1.000394 GATTTTTGGTCCCGGTTGGTG 60.000 52.381 0.00 0.00 34.77 4.17
192 193 1.334160 GATTTTTGGTCCCGGTTGGT 58.666 50.000 0.00 0.00 34.77 3.67
193 194 0.606096 GGATTTTTGGTCCCGGTTGG 59.394 55.000 0.00 0.00 0.00 3.77
194 195 1.272212 CTGGATTTTTGGTCCCGGTTG 59.728 52.381 0.00 0.00 34.76 3.77
195 196 1.146152 TCTGGATTTTTGGTCCCGGTT 59.854 47.619 0.00 0.00 34.76 4.44
196 197 0.774908 TCTGGATTTTTGGTCCCGGT 59.225 50.000 0.00 0.00 34.76 5.28
197 198 1.173913 GTCTGGATTTTTGGTCCCGG 58.826 55.000 0.00 0.00 34.76 5.73
198 199 0.802494 CGTCTGGATTTTTGGTCCCG 59.198 55.000 0.00 0.00 34.76 5.14
199 200 2.194201 TCGTCTGGATTTTTGGTCCC 57.806 50.000 0.00 0.00 34.76 4.46
200 201 2.228103 GGTTCGTCTGGATTTTTGGTCC 59.772 50.000 0.00 0.00 36.26 4.46
201 202 2.095919 CGGTTCGTCTGGATTTTTGGTC 60.096 50.000 0.00 0.00 0.00 4.02
202 203 1.877443 CGGTTCGTCTGGATTTTTGGT 59.123 47.619 0.00 0.00 0.00 3.67
203 204 1.199097 CCGGTTCGTCTGGATTTTTGG 59.801 52.381 0.00 0.00 45.09 3.28
204 205 1.199097 CCCGGTTCGTCTGGATTTTTG 59.801 52.381 0.00 0.00 45.09 2.44
205 206 1.072648 TCCCGGTTCGTCTGGATTTTT 59.927 47.619 0.00 0.00 45.09 1.94
206 207 0.688487 TCCCGGTTCGTCTGGATTTT 59.312 50.000 0.00 0.00 45.09 1.82
207 208 0.036671 GTCCCGGTTCGTCTGGATTT 60.037 55.000 0.00 0.00 45.09 2.17
208 209 1.595357 GTCCCGGTTCGTCTGGATT 59.405 57.895 0.00 0.00 45.09 3.01
209 210 2.356780 GGTCCCGGTTCGTCTGGAT 61.357 63.158 0.00 0.00 45.09 3.41
210 211 2.993264 GGTCCCGGTTCGTCTGGA 60.993 66.667 0.00 0.00 45.09 3.86
211 212 2.180159 ATTGGTCCCGGTTCGTCTGG 62.180 60.000 0.00 2.18 42.06 3.86
212 213 1.019278 CATTGGTCCCGGTTCGTCTG 61.019 60.000 0.00 0.00 0.00 3.51
213 214 1.295423 CATTGGTCCCGGTTCGTCT 59.705 57.895 0.00 0.00 0.00 4.18
214 215 1.743995 CCATTGGTCCCGGTTCGTC 60.744 63.158 0.00 0.00 0.00 4.20
215 216 2.349755 CCATTGGTCCCGGTTCGT 59.650 61.111 0.00 0.00 0.00 3.85
216 217 3.131478 GCCATTGGTCCCGGTTCG 61.131 66.667 0.00 0.00 0.00 3.95
217 218 1.749258 GAGCCATTGGTCCCGGTTC 60.749 63.158 0.00 0.00 32.76 3.62
218 219 2.355115 GAGCCATTGGTCCCGGTT 59.645 61.111 0.00 0.00 32.76 4.44
219 220 2.933287 TGAGCCATTGGTCCCGGT 60.933 61.111 0.00 0.00 38.24 5.28
220 221 2.438434 GTGAGCCATTGGTCCCGG 60.438 66.667 4.26 0.00 38.24 5.73
221 222 2.819595 CGTGAGCCATTGGTCCCG 60.820 66.667 4.26 0.70 38.24 5.14
222 223 2.040544 CACGTGAGCCATTGGTCCC 61.041 63.158 10.90 0.00 38.24 4.46
223 224 2.040544 CCACGTGAGCCATTGGTCC 61.041 63.158 19.30 0.00 38.24 4.46
224 225 2.690778 GCCACGTGAGCCATTGGTC 61.691 63.158 19.30 1.77 39.48 4.02
225 226 2.672996 GCCACGTGAGCCATTGGT 60.673 61.111 19.30 0.00 0.00 3.67
252 253 2.276740 GGTTCATGAGCCCAGGGG 59.723 66.667 17.35 3.48 38.57 4.79
253 254 2.124570 CGGTTCATGAGCCCAGGG 60.125 66.667 21.54 0.00 0.00 4.45
254 255 2.124570 CCGGTTCATGAGCCCAGG 60.125 66.667 21.54 14.43 0.00 4.45
255 256 2.124570 CCCGGTTCATGAGCCCAG 60.125 66.667 21.54 13.50 0.00 4.45
256 257 2.933287 ACCCGGTTCATGAGCCCA 60.933 61.111 21.54 0.00 0.00 5.36
257 258 2.124695 GACCCGGTTCATGAGCCC 60.125 66.667 21.54 12.43 0.00 5.19
258 259 2.124695 GGACCCGGTTCATGAGCC 60.125 66.667 18.11 18.11 0.00 4.70
259 260 0.394352 ATTGGACCCGGTTCATGAGC 60.394 55.000 0.00 0.04 0.00 4.26
260 261 1.382522 CATTGGACCCGGTTCATGAG 58.617 55.000 0.00 0.00 0.00 2.90
261 262 0.679640 GCATTGGACCCGGTTCATGA 60.680 55.000 0.00 0.00 0.00 3.07
262 263 1.666209 GGCATTGGACCCGGTTCATG 61.666 60.000 0.00 1.98 0.00 3.07
263 264 1.379843 GGCATTGGACCCGGTTCAT 60.380 57.895 0.00 0.00 0.00 2.57
264 265 2.034999 GGCATTGGACCCGGTTCA 59.965 61.111 0.00 0.00 0.00 3.18
265 266 2.754254 GGGCATTGGACCCGGTTC 60.754 66.667 0.00 0.00 37.67 3.62
271 272 2.444517 CCCATGGGGCATTGGACC 60.445 66.667 24.53 0.00 43.93 4.46
281 282 3.015145 AGAACCGGGACCCATGGG 61.015 66.667 30.23 30.23 42.03 4.00
282 283 2.272146 CAGAACCGGGACCCATGG 59.728 66.667 12.15 4.14 0.00 3.66
283 284 2.272146 CCAGAACCGGGACCCATG 59.728 66.667 12.15 3.12 0.00 3.66
284 285 2.124085 TCCAGAACCGGGACCCAT 59.876 61.111 12.15 0.00 0.00 4.00
289 290 2.055299 GTTCAGTCCAGAACCGGGA 58.945 57.895 6.32 0.00 41.52 5.14
290 291 4.695560 GTTCAGTCCAGAACCGGG 57.304 61.111 6.32 0.00 41.52 5.73
294 295 0.320508 GTCCCGGTTCAGTCCAGAAC 60.321 60.000 0.00 0.00 45.50 3.01
295 296 0.471211 AGTCCCGGTTCAGTCCAGAA 60.471 55.000 0.00 0.00 0.00 3.02
296 297 0.406750 TAGTCCCGGTTCAGTCCAGA 59.593 55.000 0.00 0.00 0.00 3.86
297 298 1.263356 TTAGTCCCGGTTCAGTCCAG 58.737 55.000 0.00 0.00 0.00 3.86
298 299 1.553248 CATTAGTCCCGGTTCAGTCCA 59.447 52.381 0.00 0.00 0.00 4.02
299 300 1.134491 CCATTAGTCCCGGTTCAGTCC 60.134 57.143 0.00 0.00 0.00 3.85
300 301 1.134491 CCCATTAGTCCCGGTTCAGTC 60.134 57.143 0.00 0.00 0.00 3.51
301 302 0.909623 CCCATTAGTCCCGGTTCAGT 59.090 55.000 0.00 0.00 0.00 3.41
302 303 0.463833 GCCCATTAGTCCCGGTTCAG 60.464 60.000 0.00 0.00 0.00 3.02
303 304 0.912487 AGCCCATTAGTCCCGGTTCA 60.912 55.000 0.00 0.00 0.00 3.18
304 305 0.463833 CAGCCCATTAGTCCCGGTTC 60.464 60.000 0.00 0.00 0.00 3.62
305 306 0.912487 TCAGCCCATTAGTCCCGGTT 60.912 55.000 0.00 0.00 0.00 4.44
306 307 1.306654 TCAGCCCATTAGTCCCGGT 60.307 57.895 0.00 0.00 0.00 5.28
307 308 1.146263 GTCAGCCCATTAGTCCCGG 59.854 63.158 0.00 0.00 0.00 5.73
308 309 1.146263 GGTCAGCCCATTAGTCCCG 59.854 63.158 0.00 0.00 0.00 5.14
319 320 4.083862 GTCCAGGTCGGGTCAGCC 62.084 72.222 0.00 0.00 34.36 4.85
320 321 4.083862 GGTCCAGGTCGGGTCAGC 62.084 72.222 0.00 0.00 34.36 4.26
321 322 1.764571 TTTGGTCCAGGTCGGGTCAG 61.765 60.000 0.00 0.00 34.36 3.51
322 323 1.764571 CTTTGGTCCAGGTCGGGTCA 61.765 60.000 0.00 0.00 34.36 4.02
323 324 1.003718 CTTTGGTCCAGGTCGGGTC 60.004 63.158 0.00 0.00 34.36 4.46
324 325 3.157680 CTTTGGTCCAGGTCGGGT 58.842 61.111 0.00 0.00 34.36 5.28
325 326 2.359975 GCTTTGGTCCAGGTCGGG 60.360 66.667 0.00 0.00 34.36 5.14
326 327 2.359975 GGCTTTGGTCCAGGTCGG 60.360 66.667 0.00 0.00 0.00 4.79
327 328 2.359975 GGGCTTTGGTCCAGGTCG 60.360 66.667 0.00 0.00 37.14 4.79
328 329 2.035783 GGGGCTTTGGTCCAGGTC 59.964 66.667 0.00 0.00 39.39 3.85
329 330 3.590574 GGGGGCTTTGGTCCAGGT 61.591 66.667 0.00 0.00 39.39 4.00
330 331 2.386391 AAAGGGGGCTTTGGTCCAGG 62.386 60.000 0.00 0.00 39.39 4.45
331 332 0.471780 AAAAGGGGGCTTTGGTCCAG 60.472 55.000 0.00 0.00 39.39 3.86
332 333 0.471022 GAAAAGGGGGCTTTGGTCCA 60.471 55.000 0.00 0.00 39.39 4.02
333 334 0.178932 AGAAAAGGGGGCTTTGGTCC 60.179 55.000 0.00 0.00 36.26 4.46
334 335 2.168496 GTAGAAAAGGGGGCTTTGGTC 58.832 52.381 0.00 0.00 0.00 4.02
335 336 1.787058 AGTAGAAAAGGGGGCTTTGGT 59.213 47.619 0.00 0.00 0.00 3.67
336 337 2.604912 AGTAGAAAAGGGGGCTTTGG 57.395 50.000 0.00 0.00 0.00 3.28
337 338 4.010349 CACTAGTAGAAAAGGGGGCTTTG 58.990 47.826 3.59 0.00 0.00 2.77
338 339 3.914435 TCACTAGTAGAAAAGGGGGCTTT 59.086 43.478 3.59 0.00 0.00 3.51
339 340 3.519913 CTCACTAGTAGAAAAGGGGGCTT 59.480 47.826 3.59 0.00 0.00 4.35
340 341 3.108376 CTCACTAGTAGAAAAGGGGGCT 58.892 50.000 3.59 0.00 0.00 5.19
341 342 2.838813 ACTCACTAGTAGAAAAGGGGGC 59.161 50.000 3.59 0.00 32.84 5.80
342 343 5.500546 AAACTCACTAGTAGAAAAGGGGG 57.499 43.478 3.59 0.00 33.75 5.40
343 344 9.163899 GATTAAAACTCACTAGTAGAAAAGGGG 57.836 37.037 3.59 0.00 33.75 4.79
344 345 9.163899 GGATTAAAACTCACTAGTAGAAAAGGG 57.836 37.037 3.59 0.00 33.75 3.95
345 346 9.945904 AGGATTAAAACTCACTAGTAGAAAAGG 57.054 33.333 3.59 0.00 33.75 3.11
429 430 0.904865 TCTCAACGGAGCCAGGACAT 60.905 55.000 0.00 0.00 41.13 3.06
448 449 5.596361 AGTAGAAGTTCATCATCGTCCATCT 59.404 40.000 5.50 0.00 0.00 2.90
487 702 0.591170 ATTTCAACCAGCGACAACCG 59.409 50.000 0.00 0.00 42.21 4.44
560 775 1.072648 CCGGTACTTGGTTGGAAGGAA 59.927 52.381 0.00 0.00 0.00 3.36
561 776 0.688487 CCGGTACTTGGTTGGAAGGA 59.312 55.000 0.00 0.00 0.00 3.36
622 837 7.920160 AAACAAATTGAAACAAACATGAGGT 57.080 28.000 0.00 0.00 0.00 3.85
670 885 6.743575 ACAATTAATTCTGAACGGAGGAAG 57.256 37.500 0.00 0.00 0.00 3.46
672 887 7.162761 TGTAACAATTAATTCTGAACGGAGGA 58.837 34.615 0.00 0.00 0.00 3.71
673 888 7.333423 TCTGTAACAATTAATTCTGAACGGAGG 59.667 37.037 0.00 0.00 0.00 4.30
674 889 8.251750 TCTGTAACAATTAATTCTGAACGGAG 57.748 34.615 0.00 0.00 0.00 4.63
675 890 8.610248 TTCTGTAACAATTAATTCTGAACGGA 57.390 30.769 0.00 2.93 0.00 4.69
676 891 9.840427 ATTTCTGTAACAATTAATTCTGAACGG 57.160 29.630 0.00 0.70 0.00 4.44
691 906 9.093970 CGTCTAAATACATCCATTTCTGTAACA 57.906 33.333 0.00 0.00 32.02 2.41
692 907 9.095065 ACGTCTAAATACATCCATTTCTGTAAC 57.905 33.333 0.00 0.00 32.02 2.50
695 910 9.832445 AATACGTCTAAATACATCCATTTCTGT 57.168 29.630 0.00 0.00 30.84 3.41
730 945 9.630098 TTACTTGTTTCGAAAATAGACGTATCT 57.370 29.630 20.98 5.60 39.15 1.98
734 949 8.767085 TGAATTACTTGTTTCGAAAATAGACGT 58.233 29.630 20.98 12.09 0.00 4.34
735 950 9.250986 CTGAATTACTTGTTTCGAAAATAGACG 57.749 33.333 20.98 7.92 0.00 4.18
736 951 9.543018 CCTGAATTACTTGTTTCGAAAATAGAC 57.457 33.333 20.98 8.37 0.00 2.59
737 952 8.726988 CCCTGAATTACTTGTTTCGAAAATAGA 58.273 33.333 20.98 6.13 0.00 1.98
738 953 7.484959 GCCCTGAATTACTTGTTTCGAAAATAG 59.515 37.037 13.10 14.47 0.00 1.73
739 954 7.309920 GCCCTGAATTACTTGTTTCGAAAATA 58.690 34.615 13.10 1.85 0.00 1.40
740 955 6.156519 GCCCTGAATTACTTGTTTCGAAAAT 58.843 36.000 13.10 0.00 0.00 1.82
741 956 5.525199 GCCCTGAATTACTTGTTTCGAAAA 58.475 37.500 13.10 0.00 0.00 2.29
742 957 4.319911 CGCCCTGAATTACTTGTTTCGAAA 60.320 41.667 6.47 6.47 0.00 3.46
743 958 3.187637 CGCCCTGAATTACTTGTTTCGAA 59.812 43.478 0.00 0.00 0.00 3.71
744 959 2.739913 CGCCCTGAATTACTTGTTTCGA 59.260 45.455 0.00 0.00 0.00 3.71
745 960 2.482721 ACGCCCTGAATTACTTGTTTCG 59.517 45.455 0.00 0.00 0.00 3.46
746 961 4.694037 ACTACGCCCTGAATTACTTGTTTC 59.306 41.667 0.00 0.00 0.00 2.78
747 962 4.648651 ACTACGCCCTGAATTACTTGTTT 58.351 39.130 0.00 0.00 0.00 2.83
748 963 4.281898 ACTACGCCCTGAATTACTTGTT 57.718 40.909 0.00 0.00 0.00 2.83
749 964 3.975168 ACTACGCCCTGAATTACTTGT 57.025 42.857 0.00 0.00 0.00 3.16
750 965 5.416947 ACTTACTACGCCCTGAATTACTTG 58.583 41.667 0.00 0.00 0.00 3.16
751 966 5.672421 ACTTACTACGCCCTGAATTACTT 57.328 39.130 0.00 0.00 0.00 2.24
752 967 6.239232 CCATACTTACTACGCCCTGAATTACT 60.239 42.308 0.00 0.00 0.00 2.24
753 968 5.924825 CCATACTTACTACGCCCTGAATTAC 59.075 44.000 0.00 0.00 0.00 1.89
754 969 5.834742 TCCATACTTACTACGCCCTGAATTA 59.165 40.000 0.00 0.00 0.00 1.40
755 970 4.652421 TCCATACTTACTACGCCCTGAATT 59.348 41.667 0.00 0.00 0.00 2.17
756 971 4.220724 TCCATACTTACTACGCCCTGAAT 58.779 43.478 0.00 0.00 0.00 2.57
757 972 3.634504 TCCATACTTACTACGCCCTGAA 58.365 45.455 0.00 0.00 0.00 3.02
758 973 3.220110 CTCCATACTTACTACGCCCTGA 58.780 50.000 0.00 0.00 0.00 3.86
759 974 2.957006 ACTCCATACTTACTACGCCCTG 59.043 50.000 0.00 0.00 0.00 4.45
760 975 3.309600 ACTCCATACTTACTACGCCCT 57.690 47.619 0.00 0.00 0.00 5.19
761 976 3.254411 GGTACTCCATACTTACTACGCCC 59.746 52.174 0.00 0.00 33.87 6.13
762 977 4.140536 AGGTACTCCATACTTACTACGCC 58.859 47.826 0.00 0.00 33.87 5.68
763 978 5.764487 AAGGTACTCCATACTTACTACGC 57.236 43.478 0.00 0.00 38.49 4.42
764 979 9.890352 GAAATAAGGTACTCCATACTTACTACG 57.110 37.037 0.00 0.00 38.49 3.51
767 982 8.925338 CCAGAAATAAGGTACTCCATACTTACT 58.075 37.037 0.00 0.00 38.49 2.24
768 983 7.656542 GCCAGAAATAAGGTACTCCATACTTAC 59.343 40.741 0.00 0.00 38.49 2.34
769 984 7.470981 CGCCAGAAATAAGGTACTCCATACTTA 60.471 40.741 0.00 0.00 38.49 2.24
770 985 6.592870 GCCAGAAATAAGGTACTCCATACTT 58.407 40.000 0.00 0.00 38.49 2.24
771 986 5.221461 CGCCAGAAATAAGGTACTCCATACT 60.221 44.000 0.00 0.00 38.49 2.12
772 987 4.989168 CGCCAGAAATAAGGTACTCCATAC 59.011 45.833 0.00 0.00 38.49 2.39
773 988 4.502604 GCGCCAGAAATAAGGTACTCCATA 60.503 45.833 0.00 0.00 38.49 2.74
774 989 3.744530 GCGCCAGAAATAAGGTACTCCAT 60.745 47.826 0.00 0.00 38.49 3.41
775 990 2.419574 GCGCCAGAAATAAGGTACTCCA 60.420 50.000 0.00 0.00 38.49 3.86
776 991 2.210961 GCGCCAGAAATAAGGTACTCC 58.789 52.381 0.00 0.00 38.49 3.85
777 992 2.158943 AGGCGCCAGAAATAAGGTACTC 60.159 50.000 31.54 0.00 38.49 2.59
779 994 2.327200 AGGCGCCAGAAATAAGGTAC 57.673 50.000 31.54 0.00 0.00 3.34
800 1015 4.396166 ACTGATATTTTGGACAAGCTTCGG 59.604 41.667 0.00 0.00 0.00 4.30
804 1019 3.445096 GGCACTGATATTTTGGACAAGCT 59.555 43.478 0.00 0.00 0.00 3.74
1635 1895 0.459063 GGTCCGACCGTTCCACATAC 60.459 60.000 0.65 0.00 0.00 2.39
1862 2124 5.298527 CACCATTGATGTGATGTGATTAGCT 59.701 40.000 0.00 0.00 0.00 3.32
1866 2128 6.406512 CCATTCACCATTGATGTGATGTGATT 60.407 38.462 0.00 0.00 0.00 2.57
1867 2129 5.068591 CCATTCACCATTGATGTGATGTGAT 59.931 40.000 0.00 0.00 0.00 3.06
1868 2130 4.399934 CCATTCACCATTGATGTGATGTGA 59.600 41.667 0.00 0.00 0.00 3.58
1870 2132 4.158949 CACCATTCACCATTGATGTGATGT 59.841 41.667 0.00 0.00 32.11 3.06
1871 2133 4.399934 TCACCATTCACCATTGATGTGATG 59.600 41.667 0.00 0.00 33.55 3.07
1875 2137 3.191162 CGTTCACCATTCACCATTGATGT 59.809 43.478 0.00 0.00 0.00 3.06
1939 2201 2.171237 GGACATGGACATGATGGTCTGA 59.829 50.000 18.38 0.00 41.20 3.27
2063 2325 1.628846 GGGGTCAGCCACTTCTTTAGA 59.371 52.381 0.00 0.00 34.61 2.10
2066 2328 1.073199 CGGGGTCAGCCACTTCTTT 59.927 57.895 0.00 0.00 35.54 2.52
2067 2329 2.113243 GACGGGGTCAGCCACTTCTT 62.113 60.000 0.00 0.00 33.98 2.52
2070 2332 2.847234 TGACGGGGTCAGCCACTT 60.847 61.111 0.00 0.00 37.67 3.16
2071 2333 3.626924 GTGACGGGGTCAGCCACT 61.627 66.667 0.00 0.00 43.57 4.00
2285 2547 2.937959 ATCCTCACCCTCCTCTCGGC 62.938 65.000 0.00 0.00 0.00 5.54
2443 2705 3.691342 CCGGCCAAGACGACCTGA 61.691 66.667 2.24 0.00 35.20 3.86
2449 2711 3.041940 GTCACACCGGCCAAGACG 61.042 66.667 0.00 0.00 0.00 4.18
2461 2723 1.671556 CCGATGATGAACCACGTCACA 60.672 52.381 0.00 0.00 45.61 3.58
2524 2786 1.825474 TCTCTGGATTCCTGGTCGTTC 59.175 52.381 9.46 0.00 0.00 3.95
2530 2792 4.579340 CACATTCATTCTCTGGATTCCTGG 59.421 45.833 9.46 0.00 0.00 4.45
2531 2793 4.036498 GCACATTCATTCTCTGGATTCCTG 59.964 45.833 3.95 3.59 0.00 3.86
2592 2870 4.377841 CGCACGGCTATTACCTAGTACTAC 60.378 50.000 0.00 0.00 0.00 2.73
2601 2879 3.609258 CGACGCACGGCTATTACC 58.391 61.111 0.00 0.00 38.46 2.85
2611 2889 1.192793 GAGATGCTCTTACGACGCAC 58.807 55.000 0.00 0.00 36.37 5.34
2612 2890 0.100682 GGAGATGCTCTTACGACGCA 59.899 55.000 0.00 0.00 38.14 5.24
2613 2891 0.100682 TGGAGATGCTCTTACGACGC 59.899 55.000 0.00 0.00 0.00 5.19
2614 2892 2.561733 TTGGAGATGCTCTTACGACG 57.438 50.000 0.00 0.00 0.00 5.12
2615 2893 5.440234 TCTATTGGAGATGCTCTTACGAC 57.560 43.478 0.00 0.00 0.00 4.34
2658 2936 8.083462 GGTCCAAATTTTACATCTTCGGTTTTA 58.917 33.333 0.00 0.00 0.00 1.52
2734 3012 5.147032 TCTTTTGGACCATCAATTTGGACT 58.853 37.500 3.10 0.00 39.25 3.85
2848 3126 1.449353 GGGAGAGCTTGATGGCGAT 59.551 57.895 0.00 0.00 37.29 4.58
2884 3162 1.402896 GCTCATCACGGGGAGGATGA 61.403 60.000 0.00 0.00 45.55 2.92
2919 3197 3.453353 ACCGATCGAAGGGGAAAAATAGA 59.547 43.478 18.66 0.00 0.00 1.98
2925 3203 0.248289 GACACCGATCGAAGGGGAAA 59.752 55.000 18.66 0.00 35.74 3.13
3052 3333 2.970324 TTGCTCGTGGTGTTCGCC 60.970 61.111 0.00 0.00 0.00 5.54
3154 3441 3.537874 CCTCCGCCGGGTCCTTAG 61.538 72.222 1.90 0.00 33.83 2.18
3214 3559 2.512896 GAATCGGGAGGCAGCCAT 59.487 61.111 15.80 0.00 0.00 4.40
3215 3560 4.161295 CGAATCGGGAGGCAGCCA 62.161 66.667 15.80 0.00 0.00 4.75
3350 3720 4.143333 CAGTCGGCCGGAATCCGT 62.143 66.667 27.83 0.00 46.80 4.69
3443 3813 1.667724 CGAGATGCATCTGGTCCAAAC 59.332 52.381 33.33 14.93 37.25 2.93


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.