Multiple sequence alignment - TraesCS2D01G556900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G556900 chr2D 100.000 4342 0 0 1 4342 630099924 630095583 0.000000e+00 8019
1 TraesCS2D01G556900 chr2D 93.886 2486 107 33 946 3401 630620966 630623436 0.000000e+00 3707
2 TraesCS2D01G556900 chr2D 86.774 1807 199 30 1028 2826 629735649 629733875 0.000000e+00 1977
3 TraesCS2D01G556900 chr2D 87.881 1510 167 12 1325 2826 630066574 630068075 0.000000e+00 1760
4 TraesCS2D01G556900 chr2D 85.978 1355 180 9 1320 2667 630034004 630035355 0.000000e+00 1441
5 TraesCS2D01G556900 chr2D 86.540 1263 157 9 1574 2825 629975379 629976639 0.000000e+00 1378
6 TraesCS2D01G556900 chr2D 95.332 707 32 1 238 944 564133258 564132553 0.000000e+00 1122
7 TraesCS2D01G556900 chr2D 83.472 841 72 31 3376 4182 630623472 630624279 0.000000e+00 721
8 TraesCS2D01G556900 chr2D 97.095 241 7 0 1 241 39887520 39887280 1.450000e-109 407
9 TraesCS2D01G556900 chr2D 92.825 223 14 2 1028 1248 630066307 630066529 5.420000e-84 322
10 TraesCS2D01G556900 chr2D 95.429 175 8 0 1028 1202 629974961 629975135 3.310000e-71 279
11 TraesCS2D01G556900 chr2D 89.286 224 22 2 1030 1251 630033725 630033948 3.310000e-71 279
12 TraesCS2D01G556900 chr2D 82.079 279 27 12 1590 1864 630697281 630697540 2.630000e-52 217
13 TraesCS2D01G556900 chr2D 90.780 141 12 1 1343 1482 629975233 629975373 2.060000e-43 187
14 TraesCS2D01G556900 chr2D 85.119 168 15 6 2840 2999 630125861 630125696 3.470000e-36 163
15 TraesCS2D01G556900 chr2D 93.506 77 5 0 4266 4342 336960670 336960746 9.870000e-22 115
16 TraesCS2D01G556900 chr2D 91.566 83 2 3 1388 1465 630638146 630638064 4.590000e-20 110
17 TraesCS2D01G556900 chr2B 95.761 1840 64 7 1001 2834 773722795 773724626 0.000000e+00 2953
18 TraesCS2D01G556900 chr2B 86.865 1515 179 10 1328 2826 773004643 773006153 0.000000e+00 1677
19 TraesCS2D01G556900 chr2B 83.095 1396 113 41 2845 4182 773724707 773726037 0.000000e+00 1157
20 TraesCS2D01G556900 chr2B 91.593 226 17 2 1028 1251 773004354 773004579 1.170000e-80 311
21 TraesCS2D01G556900 chr2B 93.902 82 5 0 4184 4265 773728351 773728432 1.640000e-24 124
22 TraesCS2D01G556900 chr2B 94.805 77 4 0 4266 4342 404411945 404412021 2.120000e-23 121
23 TraesCS2D01G556900 chr2A 94.406 1895 90 10 946 2834 760761613 760763497 0.000000e+00 2898
24 TraesCS2D01G556900 chr2A 86.608 1807 202 28 1028 2826 760776447 760774673 0.000000e+00 1960
25 TraesCS2D01G556900 chr2A 90.672 268 24 1 3128 3394 760763827 760764094 5.340000e-94 355
26 TraesCS2D01G556900 chr2A 94.419 215 10 2 3376 3589 760764136 760764349 3.240000e-86 329
27 TraesCS2D01G556900 chr2A 89.604 202 11 4 2846 3043 760763580 760763775 9.320000e-62 248
28 TraesCS2D01G556900 chr2A 91.406 128 11 0 3237 3364 760765256 760765383 4.460000e-40 176
29 TraesCS2D01G556900 chr2A 93.976 83 4 1 4261 4342 608600795 608600713 1.640000e-24 124
30 TraesCS2D01G556900 chr2A 91.304 92 4 3 2942 3032 760764623 760764711 5.900000e-24 122
31 TraesCS2D01G556900 chr2A 94.805 77 4 0 4266 4342 447139979 447140055 2.120000e-23 121
32 TraesCS2D01G556900 chr2A 94.805 77 4 0 4266 4342 594585298 594585222 2.120000e-23 121
33 TraesCS2D01G556900 chr6A 81.930 1461 232 24 1385 2821 15628586 15627134 0.000000e+00 1206
34 TraesCS2D01G556900 chr5D 95.352 710 29 3 238 944 451669896 451669188 0.000000e+00 1125
35 TraesCS2D01G556900 chr5D 73.419 1091 231 49 1717 2779 442893999 442892940 1.920000e-93 353
36 TraesCS2D01G556900 chr5D 70.291 929 242 30 1717 2631 449688248 449687340 5.810000e-34 156
37 TraesCS2D01G556900 chr5D 91.358 81 6 1 4263 4342 191705327 191705407 4.590000e-20 110
38 TraesCS2D01G556900 chr1D 95.339 708 31 2 238 944 42338759 42339465 0.000000e+00 1123
39 TraesCS2D01G556900 chr1D 95.319 705 33 0 240 944 252474934 252475638 0.000000e+00 1120
40 TraesCS2D01G556900 chr1D 97.095 241 7 0 1 241 409102658 409102418 1.450000e-109 407
41 TraesCS2D01G556900 chr7D 95.198 708 32 2 238 944 468534630 468535336 0.000000e+00 1118
42 TraesCS2D01G556900 chr7D 95.050 707 35 0 238 944 432678783 432679489 0.000000e+00 1112
43 TraesCS2D01G556900 chr7D 95.056 708 34 1 238 944 574250383 574249676 0.000000e+00 1112
44 TraesCS2D01G556900 chr7D 97.095 241 7 0 1 241 396956533 396956773 1.450000e-109 407
45 TraesCS2D01G556900 chr7D 97.095 241 7 0 1 241 460682257 460682017 1.450000e-109 407
46 TraesCS2D01G556900 chr6D 95.211 710 29 4 238 944 33095341 33096048 0.000000e+00 1118
47 TraesCS2D01G556900 chr6D 97.095 241 7 0 1 241 83290489 83290249 1.450000e-109 407
48 TraesCS2D01G556900 chr3D 95.198 708 33 1 238 944 182383236 182383943 0.000000e+00 1118
49 TraesCS2D01G556900 chr3D 97.095 241 7 0 1 241 103552019 103551779 1.450000e-109 407
50 TraesCS2D01G556900 chr3D 93.506 77 5 0 4266 4342 245135853 245135777 9.870000e-22 115
51 TraesCS2D01G556900 chr3D 90.909 77 7 0 4266 4342 386614300 386614224 2.140000e-18 104
52 TraesCS2D01G556900 chr4D 97.510 241 6 0 1 241 285754327 285754087 3.120000e-111 412
53 TraesCS2D01G556900 chr4D 93.827 81 4 1 4263 4342 461108887 461108807 2.120000e-23 121
54 TraesCS2D01G556900 chr5A 97.510 241 5 1 1 241 471310162 471309923 1.120000e-110 411
55 TraesCS2D01G556900 chr7B 97.107 242 6 1 1 241 618320032 618320273 1.450000e-109 407
56 TraesCS2D01G556900 chr5B 95.062 81 4 0 4262 4342 339296363 339296283 1.270000e-25 128
57 TraesCS2D01G556900 chr1B 96.104 77 3 0 4266 4342 50558326 50558402 4.560000e-25 126
58 TraesCS2D01G556900 chr1B 93.506 77 5 0 4266 4342 418414776 418414700 9.870000e-22 115
59 TraesCS2D01G556900 chr3B 94.805 77 4 0 4266 4342 803665811 803665887 2.120000e-23 121
60 TraesCS2D01G556900 chr3B 94.737 76 4 0 4267 4342 674876069 674875994 7.630000e-23 119
61 TraesCS2D01G556900 chr4A 93.506 77 4 1 4266 4342 589511378 589511303 3.550000e-21 113
62 TraesCS2D01G556900 chr1A 93.333 75 5 0 4268 4342 324524047 324523973 1.280000e-20 111


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G556900 chr2D 630095583 630099924 4341 True 8019.000000 8019 100.000000 1 4342 1 chr2D.!!$R4 4341
1 TraesCS2D01G556900 chr2D 630620966 630624279 3313 False 2214.000000 3707 88.679000 946 4182 2 chr2D.!!$F6 3236
2 TraesCS2D01G556900 chr2D 629733875 629735649 1774 True 1977.000000 1977 86.774000 1028 2826 1 chr2D.!!$R3 1798
3 TraesCS2D01G556900 chr2D 564132553 564133258 705 True 1122.000000 1122 95.332000 238 944 1 chr2D.!!$R2 706
4 TraesCS2D01G556900 chr2D 630066307 630068075 1768 False 1041.000000 1760 90.353000 1028 2826 2 chr2D.!!$F5 1798
5 TraesCS2D01G556900 chr2D 630033725 630035355 1630 False 860.000000 1441 87.632000 1030 2667 2 chr2D.!!$F4 1637
6 TraesCS2D01G556900 chr2D 629974961 629976639 1678 False 614.666667 1378 90.916333 1028 2825 3 chr2D.!!$F3 1797
7 TraesCS2D01G556900 chr2B 773722795 773728432 5637 False 1411.333333 2953 90.919333 1001 4265 3 chr2B.!!$F3 3264
8 TraesCS2D01G556900 chr2B 773004354 773006153 1799 False 994.000000 1677 89.229000 1028 2826 2 chr2B.!!$F2 1798
9 TraesCS2D01G556900 chr2A 760774673 760776447 1774 True 1960.000000 1960 86.608000 1028 2826 1 chr2A.!!$R3 1798
10 TraesCS2D01G556900 chr2A 760761613 760765383 3770 False 688.000000 2898 91.968500 946 3589 6 chr2A.!!$F2 2643
11 TraesCS2D01G556900 chr6A 15627134 15628586 1452 True 1206.000000 1206 81.930000 1385 2821 1 chr6A.!!$R1 1436
12 TraesCS2D01G556900 chr5D 451669188 451669896 708 True 1125.000000 1125 95.352000 238 944 1 chr5D.!!$R3 706
13 TraesCS2D01G556900 chr5D 442892940 442893999 1059 True 353.000000 353 73.419000 1717 2779 1 chr5D.!!$R1 1062
14 TraesCS2D01G556900 chr1D 42338759 42339465 706 False 1123.000000 1123 95.339000 238 944 1 chr1D.!!$F1 706
15 TraesCS2D01G556900 chr1D 252474934 252475638 704 False 1120.000000 1120 95.319000 240 944 1 chr1D.!!$F2 704
16 TraesCS2D01G556900 chr7D 468534630 468535336 706 False 1118.000000 1118 95.198000 238 944 1 chr7D.!!$F3 706
17 TraesCS2D01G556900 chr7D 432678783 432679489 706 False 1112.000000 1112 95.050000 238 944 1 chr7D.!!$F2 706
18 TraesCS2D01G556900 chr7D 574249676 574250383 707 True 1112.000000 1112 95.056000 238 944 1 chr7D.!!$R2 706
19 TraesCS2D01G556900 chr6D 33095341 33096048 707 False 1118.000000 1118 95.211000 238 944 1 chr6D.!!$F1 706
20 TraesCS2D01G556900 chr3D 182383236 182383943 707 False 1118.000000 1118 95.198000 238 944 1 chr3D.!!$F1 706

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
65 66 0.034896 CAACAAGGACTGGGCGTAGT 59.965 55.0 0.0 0.0 0.00 2.73 F
73 74 0.038526 ACTGGGCGTAGTCAAACTCG 60.039 55.0 0.0 0.0 0.00 4.18 F
141 142 0.038526 AAGCACGTCGGTAGAACCAG 60.039 55.0 0.0 0.0 38.47 4.00 F
190 191 0.107703 CTAGGCCGCTTCATCCAACA 60.108 55.0 0.0 0.0 0.00 3.33 F
192 193 0.323725 AGGCCGCTTCATCCAACAAT 60.324 50.0 0.0 0.0 0.00 2.71 F
200 201 0.537653 TCATCCAACAATACCGCCGA 59.462 50.0 0.0 0.0 0.00 5.54 F
985 995 0.806102 CAACCACGAGATAGGTGCCG 60.806 60.0 0.0 0.0 38.37 5.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1347 1384 1.066303 GTTTGTTGGTTCACGCCATGA 59.934 47.619 0.00 0.00 38.48 3.07 R
1363 1400 1.656441 GGACACCTGCAGCAGTTTG 59.344 57.895 21.26 18.53 0.00 2.93 R
1596 1727 3.429141 TCCTCGACGAGCACGACC 61.429 66.667 19.55 0.51 42.66 4.79 R
3031 3280 9.979578 ATGCAAATTCTTAGTTTTATCACAACA 57.020 25.926 0.00 0.00 0.00 3.33 R
3047 3321 9.182214 ACTTTCAGTCACATATATGCAAATTCT 57.818 29.630 12.79 1.05 0.00 2.40 R
3089 3367 0.742505 ATCAATGGCATGTTCCTGCG 59.257 50.000 0.00 0.00 43.23 5.18 R
3457 3862 0.458543 CATTGGGGTCTCTGACGTCG 60.459 60.000 11.62 6.07 32.65 5.12 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 8.775527 CATCAAAACCACAATGATTTTTCATCA 58.224 29.630 0.00 0.00 31.65 3.07
27 28 8.728337 TCAAAACCACAATGATTTTTCATCAA 57.272 26.923 0.00 0.00 0.00 2.57
28 29 8.828644 TCAAAACCACAATGATTTTTCATCAAG 58.171 29.630 0.00 0.00 0.00 3.02
29 30 8.614346 CAAAACCACAATGATTTTTCATCAAGT 58.386 29.630 0.00 0.00 0.00 3.16
30 31 7.718272 AACCACAATGATTTTTCATCAAGTG 57.282 32.000 11.14 11.14 37.62 3.16
31 32 6.819284 ACCACAATGATTTTTCATCAAGTGT 58.181 32.000 14.52 8.41 36.89 3.55
32 33 6.702723 ACCACAATGATTTTTCATCAAGTGTG 59.297 34.615 17.26 17.26 42.06 3.82
33 34 6.702723 CCACAATGATTTTTCATCAAGTGTGT 59.297 34.615 20.00 8.47 41.51 3.72
34 35 7.225145 CCACAATGATTTTTCATCAAGTGTGTT 59.775 33.333 20.00 0.00 41.51 3.32
35 36 8.059502 CACAATGATTTTTCATCAAGTGTGTTG 58.940 33.333 16.55 7.48 40.02 3.33
36 37 7.765360 ACAATGATTTTTCATCAAGTGTGTTGT 59.235 29.630 0.00 0.00 32.58 3.32
37 38 8.605746 CAATGATTTTTCATCAAGTGTGTTGTT 58.394 29.630 0.00 0.00 0.00 2.83
38 39 8.721019 ATGATTTTTCATCAAGTGTGTTGTTT 57.279 26.923 0.00 0.00 0.00 2.83
39 40 8.545229 TGATTTTTCATCAAGTGTGTTGTTTT 57.455 26.923 0.00 0.00 0.00 2.43
40 41 9.645059 TGATTTTTCATCAAGTGTGTTGTTTTA 57.355 25.926 0.00 0.00 0.00 1.52
43 44 7.820044 TTTCATCAAGTGTGTTGTTTTAACC 57.180 32.000 0.00 0.00 0.00 2.85
44 45 6.767524 TCATCAAGTGTGTTGTTTTAACCT 57.232 33.333 0.00 0.00 0.00 3.50
45 46 7.164230 TCATCAAGTGTGTTGTTTTAACCTT 57.836 32.000 0.00 0.00 0.00 3.50
46 47 7.254852 TCATCAAGTGTGTTGTTTTAACCTTC 58.745 34.615 0.00 0.00 0.00 3.46
47 48 6.576662 TCAAGTGTGTTGTTTTAACCTTCA 57.423 33.333 0.00 0.00 0.00 3.02
48 49 6.982852 TCAAGTGTGTTGTTTTAACCTTCAA 58.017 32.000 0.00 0.00 0.00 2.69
49 50 6.864165 TCAAGTGTGTTGTTTTAACCTTCAAC 59.136 34.615 0.00 0.00 40.03 3.18
50 51 6.334102 AGTGTGTTGTTTTAACCTTCAACA 57.666 33.333 5.64 5.64 44.70 3.33
51 52 6.750148 AGTGTGTTGTTTTAACCTTCAACAA 58.250 32.000 10.38 6.83 47.00 2.83
52 53 6.866248 AGTGTGTTGTTTTAACCTTCAACAAG 59.134 34.615 10.38 0.00 47.00 3.16
61 62 2.247790 CTTCAACAAGGACTGGGCG 58.752 57.895 0.00 0.00 0.00 6.13
62 63 0.535102 CTTCAACAAGGACTGGGCGT 60.535 55.000 0.00 0.00 0.00 5.68
63 64 0.759959 TTCAACAAGGACTGGGCGTA 59.240 50.000 0.00 0.00 0.00 4.42
64 65 0.320374 TCAACAAGGACTGGGCGTAG 59.680 55.000 0.00 0.00 0.00 3.51
65 66 0.034896 CAACAAGGACTGGGCGTAGT 59.965 55.000 0.00 0.00 0.00 2.73
66 67 0.320697 AACAAGGACTGGGCGTAGTC 59.679 55.000 10.91 10.91 44.96 2.59
67 68 0.830444 ACAAGGACTGGGCGTAGTCA 60.830 55.000 18.31 0.00 46.97 3.41
68 69 0.320374 CAAGGACTGGGCGTAGTCAA 59.680 55.000 18.31 0.00 46.97 3.18
69 70 1.053424 AAGGACTGGGCGTAGTCAAA 58.947 50.000 18.31 0.00 46.97 2.69
70 71 0.320697 AGGACTGGGCGTAGTCAAAC 59.679 55.000 18.31 5.44 46.97 2.93
71 72 0.320697 GGACTGGGCGTAGTCAAACT 59.679 55.000 18.31 0.00 46.97 2.66
72 73 1.672145 GGACTGGGCGTAGTCAAACTC 60.672 57.143 18.31 1.93 46.97 3.01
73 74 0.038526 ACTGGGCGTAGTCAAACTCG 60.039 55.000 0.00 0.00 0.00 4.18
74 75 0.242825 CTGGGCGTAGTCAAACTCGA 59.757 55.000 0.00 0.00 0.00 4.04
75 76 0.892755 TGGGCGTAGTCAAACTCGAT 59.107 50.000 0.00 0.00 0.00 3.59
76 77 1.274167 TGGGCGTAGTCAAACTCGATT 59.726 47.619 0.00 0.00 0.00 3.34
77 78 1.925185 GGGCGTAGTCAAACTCGATTC 59.075 52.381 0.00 0.00 0.00 2.52
78 79 2.602878 GGCGTAGTCAAACTCGATTCA 58.397 47.619 0.00 0.00 0.00 2.57
79 80 2.991190 GGCGTAGTCAAACTCGATTCAA 59.009 45.455 0.00 0.00 0.00 2.69
80 81 3.181533 GGCGTAGTCAAACTCGATTCAAC 60.182 47.826 0.00 0.00 0.00 3.18
81 82 3.673809 GCGTAGTCAAACTCGATTCAACT 59.326 43.478 0.00 0.00 0.00 3.16
82 83 4.855388 GCGTAGTCAAACTCGATTCAACTA 59.145 41.667 0.00 0.00 0.00 2.24
83 84 5.344128 GCGTAGTCAAACTCGATTCAACTAA 59.656 40.000 0.00 0.00 0.00 2.24
84 85 6.129009 GCGTAGTCAAACTCGATTCAACTAAA 60.129 38.462 0.00 0.00 0.00 1.85
85 86 7.437912 CGTAGTCAAACTCGATTCAACTAAAG 58.562 38.462 0.00 0.00 0.00 1.85
86 87 7.114529 CGTAGTCAAACTCGATTCAACTAAAGT 59.885 37.037 0.00 0.00 0.00 2.66
87 88 7.787725 AGTCAAACTCGATTCAACTAAAGTT 57.212 32.000 0.00 0.00 39.12 2.66
101 102 6.679327 AACTAAAGTTGGAGAAACAGACAC 57.321 37.500 0.00 0.00 41.61 3.67
102 103 5.123936 ACTAAAGTTGGAGAAACAGACACC 58.876 41.667 0.00 0.00 41.61 4.16
103 104 2.640316 AGTTGGAGAAACAGACACCC 57.360 50.000 0.00 0.00 41.61 4.61
104 105 1.843851 AGTTGGAGAAACAGACACCCA 59.156 47.619 0.00 0.00 41.61 4.51
105 106 1.947456 GTTGGAGAAACAGACACCCAC 59.053 52.381 0.00 0.00 38.75 4.61
106 107 1.507140 TGGAGAAACAGACACCCACT 58.493 50.000 0.00 0.00 0.00 4.00
107 108 2.684943 TGGAGAAACAGACACCCACTA 58.315 47.619 0.00 0.00 0.00 2.74
108 109 2.632996 TGGAGAAACAGACACCCACTAG 59.367 50.000 0.00 0.00 0.00 2.57
109 110 2.613223 GGAGAAACAGACACCCACTAGC 60.613 54.545 0.00 0.00 0.00 3.42
110 111 1.348036 AGAAACAGACACCCACTAGCC 59.652 52.381 0.00 0.00 0.00 3.93
111 112 1.071699 GAAACAGACACCCACTAGCCA 59.928 52.381 0.00 0.00 0.00 4.75
112 113 0.396811 AACAGACACCCACTAGCCAC 59.603 55.000 0.00 0.00 0.00 5.01
113 114 1.296715 CAGACACCCACTAGCCACC 59.703 63.158 0.00 0.00 0.00 4.61
114 115 1.158705 AGACACCCACTAGCCACCT 59.841 57.895 0.00 0.00 0.00 4.00
115 116 0.412244 AGACACCCACTAGCCACCTA 59.588 55.000 0.00 0.00 0.00 3.08
116 117 1.008449 AGACACCCACTAGCCACCTAT 59.992 52.381 0.00 0.00 0.00 2.57
117 118 1.139058 GACACCCACTAGCCACCTATG 59.861 57.143 0.00 0.00 0.00 2.23
118 119 1.204146 CACCCACTAGCCACCTATGT 58.796 55.000 0.00 0.00 0.00 2.29
119 120 1.134401 CACCCACTAGCCACCTATGTG 60.134 57.143 0.00 0.00 42.39 3.21
120 121 0.179045 CCCACTAGCCACCTATGTGC 60.179 60.000 0.00 0.00 41.35 4.57
121 122 0.530650 CCACTAGCCACCTATGTGCG 60.531 60.000 0.00 0.00 41.35 5.34
122 123 0.459899 CACTAGCCACCTATGTGCGA 59.540 55.000 0.00 0.00 41.35 5.10
123 124 1.134818 CACTAGCCACCTATGTGCGAA 60.135 52.381 0.00 0.00 41.35 4.70
124 125 1.137086 ACTAGCCACCTATGTGCGAAG 59.863 52.381 0.00 0.00 41.35 3.79
137 138 4.853507 CGAAGCACGTCGGTAGAA 57.146 55.556 0.00 0.00 37.37 2.10
138 139 2.346884 CGAAGCACGTCGGTAGAAC 58.653 57.895 0.00 0.00 37.37 3.01
139 140 1.069378 CGAAGCACGTCGGTAGAACC 61.069 60.000 0.00 0.00 37.37 3.62
140 141 0.038892 GAAGCACGTCGGTAGAACCA 60.039 55.000 0.00 0.00 38.47 3.67
141 142 0.038526 AAGCACGTCGGTAGAACCAG 60.039 55.000 0.00 0.00 38.47 4.00
142 143 1.177256 AGCACGTCGGTAGAACCAGT 61.177 55.000 0.00 0.00 38.47 4.00
143 144 0.731855 GCACGTCGGTAGAACCAGTC 60.732 60.000 0.00 0.00 38.47 3.51
144 145 0.879765 CACGTCGGTAGAACCAGTCT 59.120 55.000 0.00 0.00 38.47 3.24
145 146 1.135746 CACGTCGGTAGAACCAGTCTC 60.136 57.143 0.00 0.00 38.47 3.36
146 147 1.162698 CGTCGGTAGAACCAGTCTCA 58.837 55.000 0.00 0.00 38.47 3.27
147 148 1.743958 CGTCGGTAGAACCAGTCTCAT 59.256 52.381 0.00 0.00 38.47 2.90
148 149 2.478031 CGTCGGTAGAACCAGTCTCATG 60.478 54.545 0.00 0.00 38.47 3.07
149 150 2.753452 GTCGGTAGAACCAGTCTCATGA 59.247 50.000 0.00 0.00 38.47 3.07
150 151 3.192844 GTCGGTAGAACCAGTCTCATGAA 59.807 47.826 0.00 0.00 38.47 2.57
151 152 3.192844 TCGGTAGAACCAGTCTCATGAAC 59.807 47.826 0.00 0.00 38.47 3.18
152 153 3.512680 GGTAGAACCAGTCTCATGAACG 58.487 50.000 0.00 0.00 38.42 3.95
153 154 3.056749 GGTAGAACCAGTCTCATGAACGT 60.057 47.826 0.00 0.00 38.42 3.99
154 155 3.032017 AGAACCAGTCTCATGAACGTG 57.968 47.619 0.00 0.00 0.00 4.49
155 156 2.069273 GAACCAGTCTCATGAACGTGG 58.931 52.381 13.06 13.06 0.00 4.94
156 157 1.048601 ACCAGTCTCATGAACGTGGT 58.951 50.000 14.12 14.12 31.78 4.16
157 158 1.000955 ACCAGTCTCATGAACGTGGTC 59.999 52.381 14.12 0.00 31.27 4.02
158 159 1.000843 CCAGTCTCATGAACGTGGTCA 59.999 52.381 0.00 0.00 0.00 4.02
159 160 2.354103 CCAGTCTCATGAACGTGGTCAT 60.354 50.000 0.00 0.00 38.84 3.06
166 167 4.944962 CATGAACGTGGTCATGTAATGT 57.055 40.909 17.70 0.00 46.55 2.71
167 168 4.897224 CATGAACGTGGTCATGTAATGTC 58.103 43.478 17.70 0.00 46.55 3.06
168 169 2.990514 TGAACGTGGTCATGTAATGTCG 59.009 45.455 0.00 0.00 46.80 4.35
169 170 2.004583 ACGTGGTCATGTAATGTCGG 57.995 50.000 0.00 0.00 46.80 4.79
170 171 1.274167 ACGTGGTCATGTAATGTCGGT 59.726 47.619 0.00 0.00 46.80 4.69
171 172 1.924524 CGTGGTCATGTAATGTCGGTC 59.075 52.381 0.00 0.00 46.80 4.79
172 173 2.416836 CGTGGTCATGTAATGTCGGTCT 60.417 50.000 0.00 0.00 46.80 3.85
173 174 3.181494 CGTGGTCATGTAATGTCGGTCTA 60.181 47.826 0.00 0.00 46.80 2.59
174 175 4.360563 GTGGTCATGTAATGTCGGTCTAG 58.639 47.826 0.00 0.00 46.80 2.43
175 176 3.383505 TGGTCATGTAATGTCGGTCTAGG 59.616 47.826 0.00 0.00 46.80 3.02
176 177 3.381949 GTCATGTAATGTCGGTCTAGGC 58.618 50.000 0.00 0.00 46.80 3.93
177 178 2.364324 TCATGTAATGTCGGTCTAGGCC 59.636 50.000 2.21 2.21 46.80 5.19
178 179 2.862530 CATGTAATGTCGGTCTAGGCCG 60.863 54.545 29.94 29.94 44.06 6.13
184 185 2.815308 CGGTCTAGGCCGCTTCAT 59.185 61.111 24.91 0.00 45.47 2.57
185 186 1.300233 CGGTCTAGGCCGCTTCATC 60.300 63.158 24.91 0.00 45.47 2.92
186 187 1.069935 GGTCTAGGCCGCTTCATCC 59.930 63.158 0.00 0.00 0.00 3.51
187 188 1.686325 GGTCTAGGCCGCTTCATCCA 61.686 60.000 0.00 0.00 0.00 3.41
188 189 0.178068 GTCTAGGCCGCTTCATCCAA 59.822 55.000 0.00 0.00 0.00 3.53
189 190 0.178068 TCTAGGCCGCTTCATCCAAC 59.822 55.000 0.00 0.00 0.00 3.77
190 191 0.107703 CTAGGCCGCTTCATCCAACA 60.108 55.000 0.00 0.00 0.00 3.33
191 192 0.326595 TAGGCCGCTTCATCCAACAA 59.673 50.000 0.00 0.00 0.00 2.83
192 193 0.323725 AGGCCGCTTCATCCAACAAT 60.324 50.000 0.00 0.00 0.00 2.71
193 194 1.064758 AGGCCGCTTCATCCAACAATA 60.065 47.619 0.00 0.00 0.00 1.90
194 195 1.065551 GGCCGCTTCATCCAACAATAC 59.934 52.381 0.00 0.00 0.00 1.89
195 196 1.065551 GCCGCTTCATCCAACAATACC 59.934 52.381 0.00 0.00 0.00 2.73
196 197 1.330521 CCGCTTCATCCAACAATACCG 59.669 52.381 0.00 0.00 0.00 4.02
197 198 1.268032 CGCTTCATCCAACAATACCGC 60.268 52.381 0.00 0.00 0.00 5.68
198 199 1.065551 GCTTCATCCAACAATACCGCC 59.934 52.381 0.00 0.00 0.00 6.13
199 200 1.330521 CTTCATCCAACAATACCGCCG 59.669 52.381 0.00 0.00 0.00 6.46
200 201 0.537653 TCATCCAACAATACCGCCGA 59.462 50.000 0.00 0.00 0.00 5.54
201 202 1.066071 TCATCCAACAATACCGCCGAA 60.066 47.619 0.00 0.00 0.00 4.30
202 203 1.946768 CATCCAACAATACCGCCGAAT 59.053 47.619 0.00 0.00 0.00 3.34
203 204 1.658994 TCCAACAATACCGCCGAATC 58.341 50.000 0.00 0.00 0.00 2.52
204 205 1.066071 TCCAACAATACCGCCGAATCA 60.066 47.619 0.00 0.00 0.00 2.57
205 206 1.740585 CCAACAATACCGCCGAATCAA 59.259 47.619 0.00 0.00 0.00 2.57
206 207 2.162608 CCAACAATACCGCCGAATCAAA 59.837 45.455 0.00 0.00 0.00 2.69
207 208 3.425404 CAACAATACCGCCGAATCAAAG 58.575 45.455 0.00 0.00 0.00 2.77
208 209 2.706890 ACAATACCGCCGAATCAAAGT 58.293 42.857 0.00 0.00 0.00 2.66
209 210 3.864243 ACAATACCGCCGAATCAAAGTA 58.136 40.909 0.00 0.00 0.00 2.24
210 211 4.448210 ACAATACCGCCGAATCAAAGTAT 58.552 39.130 0.00 0.00 0.00 2.12
211 212 4.272504 ACAATACCGCCGAATCAAAGTATG 59.727 41.667 0.00 0.00 0.00 2.39
212 213 2.684001 ACCGCCGAATCAAAGTATGA 57.316 45.000 0.00 0.00 43.67 2.15
213 214 2.277084 ACCGCCGAATCAAAGTATGAC 58.723 47.619 0.00 0.00 41.93 3.06
214 215 2.276201 CCGCCGAATCAAAGTATGACA 58.724 47.619 0.00 0.00 41.93 3.58
215 216 2.872245 CCGCCGAATCAAAGTATGACAT 59.128 45.455 0.00 0.00 41.93 3.06
216 217 3.303329 CCGCCGAATCAAAGTATGACATG 60.303 47.826 0.00 0.00 41.93 3.21
217 218 3.621794 GCCGAATCAAAGTATGACATGC 58.378 45.455 0.00 0.00 41.93 4.06
218 219 3.313526 GCCGAATCAAAGTATGACATGCT 59.686 43.478 0.00 0.00 41.93 3.79
219 220 4.787563 GCCGAATCAAAGTATGACATGCTG 60.788 45.833 6.82 0.00 41.93 4.41
220 221 4.260907 CCGAATCAAAGTATGACATGCTGG 60.261 45.833 6.82 3.31 41.93 4.85
221 222 4.333649 CGAATCAAAGTATGACATGCTGGT 59.666 41.667 6.82 0.00 41.93 4.00
222 223 5.523552 CGAATCAAAGTATGACATGCTGGTA 59.476 40.000 6.82 0.00 41.93 3.25
223 224 6.037062 CGAATCAAAGTATGACATGCTGGTAA 59.963 38.462 6.82 0.00 41.93 2.85
224 225 6.932356 ATCAAAGTATGACATGCTGGTAAG 57.068 37.500 6.82 0.00 41.93 2.34
225 226 4.635765 TCAAAGTATGACATGCTGGTAAGC 59.364 41.667 6.82 0.00 40.78 3.09
249 250 6.295123 GCAGTATGACTATTATCTTTCCCCGA 60.295 42.308 0.00 0.00 39.69 5.14
399 402 2.305928 CGTGATCTCATCCAGGACTCT 58.694 52.381 0.00 0.00 0.00 3.24
447 452 8.964150 TCACATAACTCATAATACAAATCGTCG 58.036 33.333 0.00 0.00 0.00 5.12
553 558 3.181440 GGAACCTGGATGCTCATATTGGA 60.181 47.826 0.00 0.00 0.00 3.53
555 560 4.736611 ACCTGGATGCTCATATTGGATT 57.263 40.909 0.00 0.00 0.00 3.01
558 563 5.163012 ACCTGGATGCTCATATTGGATTCTT 60.163 40.000 0.00 0.00 0.00 2.52
720 725 3.181475 ACTCGTTCCGTAATGCATCATCT 60.181 43.478 0.00 0.00 0.00 2.90
826 831 4.138487 ACGGAGTGACAAATCCTAATCC 57.862 45.455 6.43 0.00 42.51 3.01
855 860 1.757699 GCCAACCCAACAAACACCTTA 59.242 47.619 0.00 0.00 0.00 2.69
857 862 3.292460 CCAACCCAACAAACACCTTAGA 58.708 45.455 0.00 0.00 0.00 2.10
859 864 4.160626 CCAACCCAACAAACACCTTAGAAA 59.839 41.667 0.00 0.00 0.00 2.52
955 960 0.875059 CGGGAGTTTTGCTCTGTTCC 59.125 55.000 0.00 0.00 43.62 3.62
981 991 1.278127 CCCAACAACCACGAGATAGGT 59.722 52.381 0.00 0.00 40.61 3.08
985 995 0.806102 CAACCACGAGATAGGTGCCG 60.806 60.000 0.00 0.00 38.37 5.69
1012 1022 2.583593 GGCGACTGAAGCTAGCCG 60.584 66.667 12.13 7.81 38.28 5.52
1347 1384 1.750399 GGGCTGGTGCGTGATGATT 60.750 57.895 0.00 0.00 40.82 2.57
1464 1506 3.780925 GCTCAACAGCATCAACACC 57.219 52.632 0.00 0.00 46.06 4.16
1557 1599 2.970324 GTGCCGGTGCTTGACGAA 60.970 61.111 1.90 0.00 38.71 3.85
2403 2564 2.600769 AAGGACGAGGACGCCACT 60.601 61.111 0.00 0.00 43.96 4.00
2985 3230 5.768662 AGCTGCAAGATTCTATTATGTGCAT 59.231 36.000 8.48 0.00 34.07 3.96
3031 3280 5.181748 GGTTATGTGAGAAATGAGAGCACT 58.818 41.667 0.00 0.00 0.00 4.40
3032 3281 5.064452 GGTTATGTGAGAAATGAGAGCACTG 59.936 44.000 0.00 0.00 0.00 3.66
3047 3321 6.989759 TGAGAGCACTGTTGTGATAAAACTAA 59.010 34.615 0.00 0.00 43.46 2.24
3057 3331 9.979578 TGTTGTGATAAAACTAAGAATTTGCAT 57.020 25.926 0.00 0.00 0.00 3.96
3087 3365 3.458189 CTGAAAGTCTGAAACTGACGGT 58.542 45.455 0.00 0.00 38.58 4.83
3088 3366 3.194861 TGAAAGTCTGAAACTGACGGTG 58.805 45.455 0.00 0.00 38.58 4.94
3089 3367 1.583054 AAGTCTGAAACTGACGGTGC 58.417 50.000 0.00 0.00 38.58 5.01
3090 3368 0.597637 AGTCTGAAACTGACGGTGCG 60.598 55.000 0.00 0.00 36.65 5.34
3091 3369 1.954146 TCTGAAACTGACGGTGCGC 60.954 57.895 0.00 0.00 0.00 6.09
3092 3370 2.202946 TGAAACTGACGGTGCGCA 60.203 55.556 5.66 5.66 0.00 6.09
3093 3371 2.162921 CTGAAACTGACGGTGCGCAG 62.163 60.000 12.22 1.57 37.17 5.18
3094 3372 2.954753 GAAACTGACGGTGCGCAGG 61.955 63.158 12.22 8.92 36.14 4.85
3095 3373 3.454587 AAACTGACGGTGCGCAGGA 62.455 57.895 12.22 0.00 36.14 3.86
3096 3374 2.933878 AAACTGACGGTGCGCAGGAA 62.934 55.000 12.22 0.00 36.14 3.36
3097 3375 3.414700 CTGACGGTGCGCAGGAAC 61.415 66.667 12.22 3.75 31.35 3.62
3098 3376 4.228567 TGACGGTGCGCAGGAACA 62.229 61.111 12.22 6.77 32.10 3.18
3099 3377 2.742372 GACGGTGCGCAGGAACAT 60.742 61.111 12.22 0.00 32.10 2.71
3100 3378 3.027170 GACGGTGCGCAGGAACATG 62.027 63.158 12.22 0.00 32.10 3.21
3101 3379 4.465512 CGGTGCGCAGGAACATGC 62.466 66.667 12.22 0.00 32.10 4.06
3102 3380 4.120331 GGTGCGCAGGAACATGCC 62.120 66.667 12.22 0.84 43.49 4.40
3103 3381 3.364441 GTGCGCAGGAACATGCCA 61.364 61.111 12.22 2.83 43.49 4.92
3104 3382 2.361483 TGCGCAGGAACATGCCAT 60.361 55.556 5.66 0.00 43.49 4.40
3105 3383 1.978080 TGCGCAGGAACATGCCATT 60.978 52.632 5.66 0.00 43.49 3.16
3106 3384 1.517694 GCGCAGGAACATGCCATTG 60.518 57.895 0.30 0.00 43.49 2.82
3107 3385 1.936436 GCGCAGGAACATGCCATTGA 61.936 55.000 0.30 0.00 43.49 2.57
3108 3386 0.742505 CGCAGGAACATGCCATTGAT 59.257 50.000 5.90 0.00 43.49 2.57
3109 3387 1.948834 CGCAGGAACATGCCATTGATA 59.051 47.619 5.90 0.00 43.49 2.15
3110 3388 2.031420 CGCAGGAACATGCCATTGATAG 60.031 50.000 5.90 0.00 43.49 2.08
3111 3389 2.288030 GCAGGAACATGCCATTGATAGC 60.288 50.000 0.00 0.00 40.43 2.97
3112 3390 2.295349 CAGGAACATGCCATTGATAGCC 59.705 50.000 0.00 0.00 0.00 3.93
3113 3391 2.091720 AGGAACATGCCATTGATAGCCA 60.092 45.455 0.00 0.00 0.00 4.75
3343 3685 3.060230 TCATCGTGTCTTTGTAATTCGCG 59.940 43.478 0.00 0.00 0.00 5.87
3348 3690 1.840141 GTCTTTGTAATTCGCGCATGC 59.160 47.619 7.91 7.91 37.91 4.06
3443 3848 1.071107 TCGCGTTGCAAAGTAAGAACG 60.071 47.619 13.93 6.59 43.11 3.95
3517 3922 2.291741 CCTTCCGCCTTTCATATTCAGC 59.708 50.000 0.00 0.00 0.00 4.26
3757 4193 6.814644 TCTGCAAATCCTAAAAATGCATGAAG 59.185 34.615 0.00 0.00 45.03 3.02
3804 4240 6.094464 TGGATTCAGAAGAGTATGCACATTTG 59.906 38.462 0.00 0.00 0.00 2.32
3842 4278 6.521151 TTGAAAAATGGTTGCAAATTTGGT 57.479 29.167 19.47 0.00 0.00 3.67
3846 4282 8.522830 TGAAAAATGGTTGCAAATTTGGTAAAA 58.477 25.926 19.47 0.56 0.00 1.52
4124 4568 3.320826 AGCAATAGGAACCAAACCACAAC 59.679 43.478 0.00 0.00 0.00 3.32
4125 4569 3.855524 GCAATAGGAACCAAACCACAACG 60.856 47.826 0.00 0.00 0.00 4.10
4129 4577 1.000612 AACCAAACCACAACGGGGT 59.999 52.632 0.00 0.00 41.41 4.95
4172 4620 2.669569 GAGGGTGTGCGCATGTGT 60.670 61.111 15.91 0.00 0.00 3.72
4192 6952 6.772605 TGTGTGCTATCCAATATTGCTAGAT 58.227 36.000 19.59 14.94 0.00 1.98
4259 7019 2.200067 CGCCAATCACTCATCTCAGAC 58.800 52.381 0.00 0.00 0.00 3.51
4265 7025 3.303881 TCACTCATCTCAGACGGTTTG 57.696 47.619 0.00 0.00 0.00 2.93
4268 7028 0.036388 TCATCTCAGACGGTTTGGCC 60.036 55.000 0.00 0.00 0.00 5.36
4269 7029 0.036010 CATCTCAGACGGTTTGGCCT 60.036 55.000 3.32 0.00 34.25 5.19
4270 7030 0.250513 ATCTCAGACGGTTTGGCCTC 59.749 55.000 3.32 0.00 34.25 4.70
4272 7032 1.831652 CTCAGACGGTTTGGCCTCCT 61.832 60.000 3.32 0.00 34.25 3.69
4273 7033 1.073199 CAGACGGTTTGGCCTCCTT 59.927 57.895 3.32 0.00 34.25 3.36
4274 7034 0.537371 CAGACGGTTTGGCCTCCTTT 60.537 55.000 3.32 0.00 34.25 3.11
4275 7035 0.537371 AGACGGTTTGGCCTCCTTTG 60.537 55.000 3.32 0.00 34.25 2.77
4277 7037 1.530655 CGGTTTGGCCTCCTTTGGT 60.531 57.895 3.32 0.00 34.25 3.67
4279 7039 0.679505 GGTTTGGCCTCCTTTGGTTC 59.320 55.000 3.32 0.00 0.00 3.62
4280 7040 1.408969 GTTTGGCCTCCTTTGGTTCA 58.591 50.000 3.32 0.00 0.00 3.18
4281 7041 1.970640 GTTTGGCCTCCTTTGGTTCAT 59.029 47.619 3.32 0.00 0.00 2.57
4282 7042 3.161866 GTTTGGCCTCCTTTGGTTCATA 58.838 45.455 3.32 0.00 0.00 2.15
4283 7043 3.756082 TTGGCCTCCTTTGGTTCATAT 57.244 42.857 3.32 0.00 0.00 1.78
4284 7044 3.017048 TGGCCTCCTTTGGTTCATATG 57.983 47.619 3.32 0.00 0.00 1.78
4285 7045 2.580322 TGGCCTCCTTTGGTTCATATGA 59.420 45.455 3.32 0.00 0.00 2.15
4286 7046 3.011144 TGGCCTCCTTTGGTTCATATGAA 59.989 43.478 14.23 14.23 0.00 2.57
4288 7048 5.103728 TGGCCTCCTTTGGTTCATATGAATA 60.104 40.000 20.65 10.73 36.33 1.75
4290 7050 7.175104 GGCCTCCTTTGGTTCATATGAATATA 58.825 38.462 20.65 8.06 36.33 0.86
4291 7051 7.337942 GGCCTCCTTTGGTTCATATGAATATAG 59.662 40.741 20.65 15.43 36.33 1.31
4292 7052 7.885399 GCCTCCTTTGGTTCATATGAATATAGT 59.115 37.037 20.65 0.00 36.33 2.12
4311 7071 9.965902 AATATAGTAGGAATTGCAAAGGATAGG 57.034 33.333 1.71 0.00 0.00 2.57
4312 7072 5.975988 AGTAGGAATTGCAAAGGATAGGA 57.024 39.130 1.71 0.00 0.00 2.94
4313 7073 6.327386 AGTAGGAATTGCAAAGGATAGGAA 57.673 37.500 1.71 0.00 0.00 3.36
4314 7074 6.122964 AGTAGGAATTGCAAAGGATAGGAAC 58.877 40.000 1.71 0.00 0.00 3.62
4315 7075 5.198602 AGGAATTGCAAAGGATAGGAACT 57.801 39.130 1.71 0.00 46.37 3.01
4316 7076 5.583932 AGGAATTGCAAAGGATAGGAACTT 58.416 37.500 1.71 0.00 41.75 2.66
4317 7077 6.019108 AGGAATTGCAAAGGATAGGAACTTT 58.981 36.000 1.71 0.00 41.75 2.66
4331 7091 9.803315 GGATAGGAACTTTGTATGAAAAATTCC 57.197 33.333 6.93 6.93 41.75 3.01
4335 7095 9.546428 AGGAACTTTGTATGAAAAATTCCTTTG 57.454 29.630 10.29 0.00 41.47 2.77
4337 7097 9.541143 GAACTTTGTATGAAAAATTCCTTTGGA 57.459 29.630 0.00 0.00 0.00 3.53
4338 7098 9.546428 AACTTTGTATGAAAAATTCCTTTGGAG 57.454 29.630 0.00 0.00 31.21 3.86
4339 7099 7.657354 ACTTTGTATGAAAAATTCCTTTGGAGC 59.343 33.333 0.00 0.00 31.21 4.70
4340 7100 6.036577 TGTATGAAAAATTCCTTTGGAGCC 57.963 37.500 0.00 0.00 31.21 4.70
4341 7101 4.558226 ATGAAAAATTCCTTTGGAGCCC 57.442 40.909 0.00 0.00 31.21 5.19
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.775527 TGATGAAAAATCATTGTGGTTTTGATG 58.224 29.630 2.05 0.00 39.54 3.07
4 5 8.614346 CACTTGATGAAAAATCATTGTGGTTTT 58.386 29.630 11.13 0.00 41.99 2.43
5 6 7.769970 ACACTTGATGAAAAATCATTGTGGTTT 59.230 29.630 17.91 0.00 37.28 3.27
6 7 7.225145 CACACTTGATGAAAAATCATTGTGGTT 59.775 33.333 17.91 4.50 38.00 3.67
7 8 6.702723 CACACTTGATGAAAAATCATTGTGGT 59.297 34.615 17.91 7.99 38.00 4.16
8 9 6.702723 ACACACTTGATGAAAAATCATTGTGG 59.297 34.615 22.09 14.71 41.66 4.17
9 10 7.703298 ACACACTTGATGAAAAATCATTGTG 57.297 32.000 19.26 19.26 42.30 3.33
10 11 7.765360 ACAACACACTTGATGAAAAATCATTGT 59.235 29.630 0.00 0.00 30.22 2.71
11 12 8.133754 ACAACACACTTGATGAAAAATCATTG 57.866 30.769 0.00 0.00 30.22 2.82
12 13 8.721019 AACAACACACTTGATGAAAAATCATT 57.279 26.923 0.00 0.00 30.22 2.57
13 14 8.721019 AAACAACACACTTGATGAAAAATCAT 57.279 26.923 0.00 0.00 30.22 2.45
14 15 8.545229 AAAACAACACACTTGATGAAAAATCA 57.455 26.923 0.00 0.00 30.22 2.57
17 18 8.713271 GGTTAAAACAACACACTTGATGAAAAA 58.287 29.630 0.00 0.00 30.22 1.94
18 19 8.091449 AGGTTAAAACAACACACTTGATGAAAA 58.909 29.630 0.00 0.00 30.22 2.29
19 20 7.607250 AGGTTAAAACAACACACTTGATGAAA 58.393 30.769 0.00 0.00 30.22 2.69
20 21 7.164230 AGGTTAAAACAACACACTTGATGAA 57.836 32.000 0.00 0.00 30.22 2.57
21 22 6.767524 AGGTTAAAACAACACACTTGATGA 57.232 33.333 0.00 0.00 30.22 2.92
22 23 7.032580 TGAAGGTTAAAACAACACACTTGATG 58.967 34.615 0.00 0.00 0.00 3.07
23 24 7.164230 TGAAGGTTAAAACAACACACTTGAT 57.836 32.000 0.00 0.00 0.00 2.57
24 25 6.576662 TGAAGGTTAAAACAACACACTTGA 57.423 33.333 0.00 0.00 0.00 3.02
25 26 6.642950 TGTTGAAGGTTAAAACAACACACTTG 59.357 34.615 0.00 0.00 44.50 3.16
26 27 6.750148 TGTTGAAGGTTAAAACAACACACTT 58.250 32.000 0.00 0.00 44.50 3.16
27 28 6.334102 TGTTGAAGGTTAAAACAACACACT 57.666 33.333 0.00 0.00 44.50 3.55
43 44 0.535102 ACGCCCAGTCCTTGTTGAAG 60.535 55.000 0.00 0.00 0.00 3.02
44 45 0.759959 TACGCCCAGTCCTTGTTGAA 59.240 50.000 0.00 0.00 0.00 2.69
45 46 0.320374 CTACGCCCAGTCCTTGTTGA 59.680 55.000 0.00 0.00 0.00 3.18
46 47 0.034896 ACTACGCCCAGTCCTTGTTG 59.965 55.000 0.00 0.00 0.00 3.33
47 48 0.320697 GACTACGCCCAGTCCTTGTT 59.679 55.000 1.66 0.00 39.26 2.83
48 49 0.830444 TGACTACGCCCAGTCCTTGT 60.830 55.000 9.27 0.00 43.63 3.16
49 50 0.320374 TTGACTACGCCCAGTCCTTG 59.680 55.000 9.27 0.00 43.63 3.61
50 51 1.053424 TTTGACTACGCCCAGTCCTT 58.947 50.000 9.27 0.00 43.63 3.36
51 52 0.320697 GTTTGACTACGCCCAGTCCT 59.679 55.000 9.27 0.00 43.63 3.85
52 53 0.320697 AGTTTGACTACGCCCAGTCC 59.679 55.000 9.27 0.00 43.63 3.85
53 54 1.711206 GAGTTTGACTACGCCCAGTC 58.289 55.000 5.58 5.58 44.37 3.51
54 55 0.038526 CGAGTTTGACTACGCCCAGT 60.039 55.000 0.00 0.00 0.00 4.00
55 56 0.242825 TCGAGTTTGACTACGCCCAG 59.757 55.000 0.00 0.00 0.00 4.45
56 57 0.892755 ATCGAGTTTGACTACGCCCA 59.107 50.000 0.00 0.00 0.00 5.36
57 58 1.925185 GAATCGAGTTTGACTACGCCC 59.075 52.381 0.00 0.00 0.00 6.13
58 59 2.602878 TGAATCGAGTTTGACTACGCC 58.397 47.619 0.00 0.00 0.00 5.68
59 60 3.673809 AGTTGAATCGAGTTTGACTACGC 59.326 43.478 0.00 0.00 0.00 4.42
60 61 6.922980 TTAGTTGAATCGAGTTTGACTACG 57.077 37.500 0.00 0.00 0.00 3.51
61 62 8.295569 ACTTTAGTTGAATCGAGTTTGACTAC 57.704 34.615 0.00 0.00 0.00 2.73
62 63 8.882415 AACTTTAGTTGAATCGAGTTTGACTA 57.118 30.769 0.00 0.00 36.80 2.59
63 64 7.787725 AACTTTAGTTGAATCGAGTTTGACT 57.212 32.000 0.00 0.00 36.80 3.41
78 79 5.589050 GGTGTCTGTTTCTCCAACTTTAGTT 59.411 40.000 0.00 0.00 39.12 2.24
79 80 5.123936 GGTGTCTGTTTCTCCAACTTTAGT 58.876 41.667 0.00 0.00 36.21 2.24
80 81 4.515567 GGGTGTCTGTTTCTCCAACTTTAG 59.484 45.833 0.00 0.00 36.21 1.85
81 82 4.080243 TGGGTGTCTGTTTCTCCAACTTTA 60.080 41.667 0.00 0.00 36.21 1.85
82 83 3.288092 GGGTGTCTGTTTCTCCAACTTT 58.712 45.455 0.00 0.00 36.21 2.66
83 84 2.241176 TGGGTGTCTGTTTCTCCAACTT 59.759 45.455 0.00 0.00 36.21 2.66
84 85 1.843851 TGGGTGTCTGTTTCTCCAACT 59.156 47.619 0.00 0.00 36.21 3.16
85 86 1.947456 GTGGGTGTCTGTTTCTCCAAC 59.053 52.381 0.00 0.00 35.71 3.77
86 87 1.843851 AGTGGGTGTCTGTTTCTCCAA 59.156 47.619 0.00 0.00 0.00 3.53
87 88 1.507140 AGTGGGTGTCTGTTTCTCCA 58.493 50.000 0.00 0.00 0.00 3.86
88 89 2.613223 GCTAGTGGGTGTCTGTTTCTCC 60.613 54.545 0.00 0.00 0.00 3.71
89 90 2.613223 GGCTAGTGGGTGTCTGTTTCTC 60.613 54.545 0.00 0.00 0.00 2.87
90 91 1.348036 GGCTAGTGGGTGTCTGTTTCT 59.652 52.381 0.00 0.00 0.00 2.52
91 92 1.071699 TGGCTAGTGGGTGTCTGTTTC 59.928 52.381 0.00 0.00 0.00 2.78
92 93 1.136828 TGGCTAGTGGGTGTCTGTTT 58.863 50.000 0.00 0.00 0.00 2.83
93 94 0.396811 GTGGCTAGTGGGTGTCTGTT 59.603 55.000 0.00 0.00 0.00 3.16
94 95 1.481056 GGTGGCTAGTGGGTGTCTGT 61.481 60.000 0.00 0.00 0.00 3.41
95 96 1.194781 AGGTGGCTAGTGGGTGTCTG 61.195 60.000 0.00 0.00 0.00 3.51
96 97 0.412244 TAGGTGGCTAGTGGGTGTCT 59.588 55.000 0.00 0.00 0.00 3.41
97 98 1.139058 CATAGGTGGCTAGTGGGTGTC 59.861 57.143 0.00 0.00 0.00 3.67
98 99 1.204146 CATAGGTGGCTAGTGGGTGT 58.796 55.000 0.00 0.00 0.00 4.16
99 100 1.134401 CACATAGGTGGCTAGTGGGTG 60.134 57.143 0.00 0.00 41.45 4.61
100 101 1.204146 CACATAGGTGGCTAGTGGGT 58.796 55.000 0.00 0.00 41.45 4.51
101 102 0.179045 GCACATAGGTGGCTAGTGGG 60.179 60.000 9.91 0.00 45.38 4.61
102 103 0.530650 CGCACATAGGTGGCTAGTGG 60.531 60.000 9.91 0.00 45.38 4.00
103 104 0.459899 TCGCACATAGGTGGCTAGTG 59.540 55.000 9.91 0.00 45.38 2.74
104 105 1.137086 CTTCGCACATAGGTGGCTAGT 59.863 52.381 9.91 0.00 45.38 2.57
105 106 1.858091 CTTCGCACATAGGTGGCTAG 58.142 55.000 9.91 0.00 45.38 3.42
106 107 0.179084 GCTTCGCACATAGGTGGCTA 60.179 55.000 9.91 0.00 45.38 3.93
107 108 1.450312 GCTTCGCACATAGGTGGCT 60.450 57.895 9.91 0.00 45.38 4.75
108 109 1.745115 TGCTTCGCACATAGGTGGC 60.745 57.895 9.91 4.65 45.38 5.01
109 110 4.615901 TGCTTCGCACATAGGTGG 57.384 55.556 9.91 0.00 45.38 4.61
118 119 2.126618 CTACCGACGTGCTTCGCA 60.127 61.111 0.00 0.00 44.19 5.10
119 120 1.443194 TTCTACCGACGTGCTTCGC 60.443 57.895 0.00 0.00 44.19 4.70
120 121 1.069378 GGTTCTACCGACGTGCTTCG 61.069 60.000 0.00 0.00 46.00 3.79
121 122 0.038892 TGGTTCTACCGACGTGCTTC 60.039 55.000 0.00 0.00 42.58 3.86
122 123 0.038526 CTGGTTCTACCGACGTGCTT 60.039 55.000 0.00 0.00 42.58 3.91
123 124 1.177256 ACTGGTTCTACCGACGTGCT 61.177 55.000 0.00 0.00 42.58 4.40
124 125 0.731855 GACTGGTTCTACCGACGTGC 60.732 60.000 0.00 0.00 42.58 5.34
125 126 0.879765 AGACTGGTTCTACCGACGTG 59.120 55.000 0.00 0.00 42.58 4.49
126 127 1.163554 GAGACTGGTTCTACCGACGT 58.836 55.000 0.00 0.00 42.58 4.34
127 128 1.162698 TGAGACTGGTTCTACCGACG 58.837 55.000 0.00 0.00 42.58 5.12
128 129 2.753452 TCATGAGACTGGTTCTACCGAC 59.247 50.000 0.00 0.00 42.58 4.79
129 130 3.081710 TCATGAGACTGGTTCTACCGA 57.918 47.619 0.00 0.00 42.58 4.69
130 131 3.512680 GTTCATGAGACTGGTTCTACCG 58.487 50.000 0.00 0.00 42.58 4.02
131 132 3.056749 ACGTTCATGAGACTGGTTCTACC 60.057 47.826 0.00 0.00 39.22 3.18
132 133 3.921021 CACGTTCATGAGACTGGTTCTAC 59.079 47.826 0.00 0.00 33.22 2.59
133 134 3.056821 CCACGTTCATGAGACTGGTTCTA 60.057 47.826 0.00 0.00 33.22 2.10
134 135 2.289072 CCACGTTCATGAGACTGGTTCT 60.289 50.000 0.00 0.00 37.23 3.01
135 136 2.069273 CCACGTTCATGAGACTGGTTC 58.931 52.381 0.00 0.00 0.00 3.62
136 137 1.416401 ACCACGTTCATGAGACTGGTT 59.584 47.619 12.32 1.39 0.00 3.67
137 138 1.000955 GACCACGTTCATGAGACTGGT 59.999 52.381 16.26 16.26 34.64 4.00
138 139 1.000843 TGACCACGTTCATGAGACTGG 59.999 52.381 11.30 11.30 0.00 4.00
139 140 2.438868 TGACCACGTTCATGAGACTG 57.561 50.000 0.00 0.00 0.00 3.51
146 147 3.616821 CGACATTACATGACCACGTTCAT 59.383 43.478 0.00 0.00 36.62 2.57
147 148 2.990514 CGACATTACATGACCACGTTCA 59.009 45.455 0.00 0.00 0.00 3.18
148 149 2.347452 CCGACATTACATGACCACGTTC 59.653 50.000 0.00 0.00 0.00 3.95
149 150 2.289195 ACCGACATTACATGACCACGTT 60.289 45.455 0.00 0.00 0.00 3.99
150 151 1.274167 ACCGACATTACATGACCACGT 59.726 47.619 0.00 0.00 0.00 4.49
151 152 1.924524 GACCGACATTACATGACCACG 59.075 52.381 0.00 0.00 0.00 4.94
152 153 3.247006 AGACCGACATTACATGACCAC 57.753 47.619 0.00 0.00 0.00 4.16
153 154 3.383505 CCTAGACCGACATTACATGACCA 59.616 47.826 0.00 0.00 0.00 4.02
154 155 3.799232 GCCTAGACCGACATTACATGACC 60.799 52.174 0.00 0.00 0.00 4.02
155 156 3.381949 GCCTAGACCGACATTACATGAC 58.618 50.000 0.00 0.00 0.00 3.06
156 157 2.364324 GGCCTAGACCGACATTACATGA 59.636 50.000 0.00 0.00 0.00 3.07
157 158 2.755650 GGCCTAGACCGACATTACATG 58.244 52.381 0.00 0.00 0.00 3.21
168 169 1.069935 GGATGAAGCGGCCTAGACC 59.930 63.158 0.00 0.00 0.00 3.85
169 170 0.178068 TTGGATGAAGCGGCCTAGAC 59.822 55.000 0.00 0.00 0.00 2.59
170 171 0.178068 GTTGGATGAAGCGGCCTAGA 59.822 55.000 0.00 0.00 0.00 2.43
171 172 0.107703 TGTTGGATGAAGCGGCCTAG 60.108 55.000 0.00 0.00 0.00 3.02
172 173 0.326595 TTGTTGGATGAAGCGGCCTA 59.673 50.000 0.00 0.00 0.00 3.93
173 174 0.323725 ATTGTTGGATGAAGCGGCCT 60.324 50.000 0.00 0.00 0.00 5.19
174 175 1.065551 GTATTGTTGGATGAAGCGGCC 59.934 52.381 0.00 0.00 0.00 6.13
175 176 1.065551 GGTATTGTTGGATGAAGCGGC 59.934 52.381 0.00 0.00 0.00 6.53
176 177 1.330521 CGGTATTGTTGGATGAAGCGG 59.669 52.381 0.00 0.00 0.00 5.52
177 178 1.268032 GCGGTATTGTTGGATGAAGCG 60.268 52.381 0.00 0.00 0.00 4.68
178 179 1.065551 GGCGGTATTGTTGGATGAAGC 59.934 52.381 0.00 0.00 0.00 3.86
179 180 1.330521 CGGCGGTATTGTTGGATGAAG 59.669 52.381 0.00 0.00 0.00 3.02
180 181 1.066071 TCGGCGGTATTGTTGGATGAA 60.066 47.619 7.21 0.00 0.00 2.57
181 182 0.537653 TCGGCGGTATTGTTGGATGA 59.462 50.000 7.21 0.00 0.00 2.92
182 183 1.374560 TTCGGCGGTATTGTTGGATG 58.625 50.000 7.21 0.00 0.00 3.51
183 184 2.218603 GATTCGGCGGTATTGTTGGAT 58.781 47.619 7.21 0.00 0.00 3.41
184 185 1.066071 TGATTCGGCGGTATTGTTGGA 60.066 47.619 7.21 0.00 0.00 3.53
185 186 1.374560 TGATTCGGCGGTATTGTTGG 58.625 50.000 7.21 0.00 0.00 3.77
186 187 3.119990 ACTTTGATTCGGCGGTATTGTTG 60.120 43.478 7.21 0.00 0.00 3.33
187 188 3.078837 ACTTTGATTCGGCGGTATTGTT 58.921 40.909 7.21 0.00 0.00 2.83
188 189 2.706890 ACTTTGATTCGGCGGTATTGT 58.293 42.857 7.21 0.00 0.00 2.71
189 190 4.509970 TCATACTTTGATTCGGCGGTATTG 59.490 41.667 7.21 1.15 0.00 1.90
190 191 4.510340 GTCATACTTTGATTCGGCGGTATT 59.490 41.667 7.21 0.00 36.54 1.89
191 192 4.056050 GTCATACTTTGATTCGGCGGTAT 58.944 43.478 7.21 1.72 36.54 2.73
192 193 3.119065 TGTCATACTTTGATTCGGCGGTA 60.119 43.478 7.21 0.00 36.54 4.02
193 194 2.277084 GTCATACTTTGATTCGGCGGT 58.723 47.619 7.21 0.00 36.54 5.68
194 195 2.276201 TGTCATACTTTGATTCGGCGG 58.724 47.619 7.21 0.00 36.54 6.13
195 196 3.846023 GCATGTCATACTTTGATTCGGCG 60.846 47.826 0.00 0.00 36.54 6.46
196 197 3.313526 AGCATGTCATACTTTGATTCGGC 59.686 43.478 0.00 0.00 36.54 5.54
197 198 4.260907 CCAGCATGTCATACTTTGATTCGG 60.261 45.833 0.00 0.00 36.54 4.30
198 199 4.333649 ACCAGCATGTCATACTTTGATTCG 59.666 41.667 0.00 0.00 36.54 3.34
199 200 5.824904 ACCAGCATGTCATACTTTGATTC 57.175 39.130 0.00 0.00 36.54 2.52
200 201 6.183360 GCTTACCAGCATGTCATACTTTGATT 60.183 38.462 0.00 0.00 46.49 2.57
201 202 5.297776 GCTTACCAGCATGTCATACTTTGAT 59.702 40.000 0.00 0.00 46.49 2.57
202 203 4.635765 GCTTACCAGCATGTCATACTTTGA 59.364 41.667 0.00 0.00 46.49 2.69
203 204 4.913376 GCTTACCAGCATGTCATACTTTG 58.087 43.478 0.00 0.00 46.49 2.77
216 217 7.607250 AGATAATAGTCATACTGCTTACCAGC 58.393 38.462 0.00 0.00 45.78 4.85
218 219 9.982651 GAAAGATAATAGTCATACTGCTTACCA 57.017 33.333 0.00 0.00 0.00 3.25
219 220 9.425577 GGAAAGATAATAGTCATACTGCTTACC 57.574 37.037 0.00 0.00 0.00 2.85
220 221 9.425577 GGGAAAGATAATAGTCATACTGCTTAC 57.574 37.037 0.00 0.00 0.00 2.34
221 222 8.594550 GGGGAAAGATAATAGTCATACTGCTTA 58.405 37.037 0.00 0.00 0.00 3.09
222 223 7.454225 GGGGAAAGATAATAGTCATACTGCTT 58.546 38.462 0.00 0.00 0.00 3.91
223 224 6.295349 CGGGGAAAGATAATAGTCATACTGCT 60.295 42.308 0.00 0.00 0.00 4.24
224 225 5.869888 CGGGGAAAGATAATAGTCATACTGC 59.130 44.000 0.00 0.00 0.00 4.40
225 226 7.228314 TCGGGGAAAGATAATAGTCATACTG 57.772 40.000 0.00 0.00 0.00 2.74
226 227 6.437793 CCTCGGGGAAAGATAATAGTCATACT 59.562 42.308 0.00 0.00 33.58 2.12
227 228 6.631962 CCTCGGGGAAAGATAATAGTCATAC 58.368 44.000 0.00 0.00 33.58 2.39
228 229 6.852420 CCTCGGGGAAAGATAATAGTCATA 57.148 41.667 0.00 0.00 33.58 2.15
229 230 5.746990 CCTCGGGGAAAGATAATAGTCAT 57.253 43.478 0.00 0.00 33.58 3.06
399 402 5.298026 TGATTTGATGACCGAAGTTTGTTCA 59.702 36.000 0.00 0.00 0.00 3.18
558 563 9.011095 ACCGATAAAGATCTTCGTAGAATATGA 57.989 33.333 8.78 0.00 45.90 2.15
771 776 1.830408 CTCTGGGCCCTCTCGGTAG 60.830 68.421 25.70 10.33 0.00 3.18
826 831 1.308998 GTTGGGTTGGCATAGATCGG 58.691 55.000 0.00 0.00 0.00 4.18
944 949 1.671742 GGGAGACGGAACAGAGCAA 59.328 57.895 0.00 0.00 0.00 3.91
955 960 1.959226 CGTGGTTGTTGGGGAGACG 60.959 63.158 0.00 0.00 0.00 4.18
1347 1384 1.066303 GTTTGTTGGTTCACGCCATGA 59.934 47.619 0.00 0.00 38.48 3.07
1363 1400 1.656441 GGACACCTGCAGCAGTTTG 59.344 57.895 21.26 18.53 0.00 2.93
1596 1727 3.429141 TCCTCGACGAGCACGACC 61.429 66.667 19.55 0.51 42.66 4.79
3031 3280 9.979578 ATGCAAATTCTTAGTTTTATCACAACA 57.020 25.926 0.00 0.00 0.00 3.33
3047 3321 9.182214 ACTTTCAGTCACATATATGCAAATTCT 57.818 29.630 12.79 1.05 0.00 2.40
3081 3359 3.529341 ATGTTCCTGCGCACCGTCA 62.529 57.895 5.66 4.39 0.00 4.35
3082 3360 2.742372 ATGTTCCTGCGCACCGTC 60.742 61.111 5.66 0.00 0.00 4.79
3083 3361 3.049674 CATGTTCCTGCGCACCGT 61.050 61.111 5.66 0.00 0.00 4.83
3085 3363 4.120331 GGCATGTTCCTGCGCACC 62.120 66.667 5.66 0.00 43.23 5.01
3086 3364 2.216750 AATGGCATGTTCCTGCGCAC 62.217 55.000 5.66 0.00 43.23 5.34
3087 3365 1.978080 AATGGCATGTTCCTGCGCA 60.978 52.632 10.98 10.98 43.23 6.09
3088 3366 1.517694 CAATGGCATGTTCCTGCGC 60.518 57.895 0.00 0.00 43.23 6.09
3089 3367 0.742505 ATCAATGGCATGTTCCTGCG 59.257 50.000 0.00 0.00 43.23 5.18
3090 3368 2.288030 GCTATCAATGGCATGTTCCTGC 60.288 50.000 0.00 0.00 41.53 4.85
3091 3369 2.295349 GGCTATCAATGGCATGTTCCTG 59.705 50.000 0.00 0.00 35.81 3.86
3092 3370 2.091720 TGGCTATCAATGGCATGTTCCT 60.092 45.455 0.00 0.00 35.81 3.36
3093 3371 2.035066 GTGGCTATCAATGGCATGTTCC 59.965 50.000 0.00 0.00 41.85 3.62
3094 3372 2.954318 AGTGGCTATCAATGGCATGTTC 59.046 45.455 0.00 0.00 41.85 3.18
3095 3373 2.691526 CAGTGGCTATCAATGGCATGTT 59.308 45.455 0.00 0.00 41.85 2.71
3096 3374 2.092267 TCAGTGGCTATCAATGGCATGT 60.092 45.455 0.00 0.00 41.35 3.21
3097 3375 2.578786 TCAGTGGCTATCAATGGCATG 58.421 47.619 0.00 0.00 41.35 4.06
3098 3376 2.954318 GTTCAGTGGCTATCAATGGCAT 59.046 45.455 0.00 0.00 41.35 4.40
3099 3377 2.368439 GTTCAGTGGCTATCAATGGCA 58.632 47.619 0.00 0.00 41.35 4.92
3100 3378 1.678101 GGTTCAGTGGCTATCAATGGC 59.322 52.381 0.00 0.00 41.35 4.40
3101 3379 1.942657 CGGTTCAGTGGCTATCAATGG 59.057 52.381 0.00 0.00 41.35 3.16
3102 3380 2.868583 CTCGGTTCAGTGGCTATCAATG 59.131 50.000 0.00 0.00 42.27 2.82
3103 3381 2.766263 TCTCGGTTCAGTGGCTATCAAT 59.234 45.455 0.00 0.00 0.00 2.57
3104 3382 2.176045 TCTCGGTTCAGTGGCTATCAA 58.824 47.619 0.00 0.00 0.00 2.57
3105 3383 1.847328 TCTCGGTTCAGTGGCTATCA 58.153 50.000 0.00 0.00 0.00 2.15
3106 3384 2.961526 TTCTCGGTTCAGTGGCTATC 57.038 50.000 0.00 0.00 0.00 2.08
3107 3385 3.914426 AATTCTCGGTTCAGTGGCTAT 57.086 42.857 0.00 0.00 0.00 2.97
3108 3386 3.132289 CCTAATTCTCGGTTCAGTGGCTA 59.868 47.826 0.00 0.00 0.00 3.93
3109 3387 2.093447 CCTAATTCTCGGTTCAGTGGCT 60.093 50.000 0.00 0.00 0.00 4.75
3110 3388 2.280628 CCTAATTCTCGGTTCAGTGGC 58.719 52.381 0.00 0.00 0.00 5.01
3111 3389 2.280628 GCCTAATTCTCGGTTCAGTGG 58.719 52.381 0.00 0.00 0.00 4.00
3112 3390 2.280628 GGCCTAATTCTCGGTTCAGTG 58.719 52.381 0.00 0.00 0.00 3.66
3113 3391 1.134788 CGGCCTAATTCTCGGTTCAGT 60.135 52.381 0.00 0.00 0.00 3.41
3268 3609 4.525024 CCCAAGCAGAGATGAAGAGAAAT 58.475 43.478 0.00 0.00 0.00 2.17
3343 3685 1.523154 TTTCAGGTTCGGTGGCATGC 61.523 55.000 9.90 9.90 0.00 4.06
3348 3690 4.048504 GTCAAAATTTTCAGGTTCGGTGG 58.951 43.478 0.00 0.00 0.00 4.61
3443 3848 6.143438 TCTCTGACGTCGTTCAATAACTTTTC 59.857 38.462 11.62 0.00 33.15 2.29
3457 3862 0.458543 CATTGGGGTCTCTGACGTCG 60.459 60.000 11.62 6.07 32.65 5.12
3757 4193 6.044682 CCAAGTCTCATGGCCATTTTAAATC 58.955 40.000 17.92 3.29 0.00 2.17
3769 4205 5.095145 TCTTCTGAATCCAAGTCTCATGG 57.905 43.478 0.00 0.00 39.41 3.66
4095 4539 5.924254 GGTTTGGTTCCTATTGCTTTTACAC 59.076 40.000 0.00 0.00 0.00 2.90
4108 4552 0.753848 CCCGTTGTGGTTTGGTTCCT 60.754 55.000 0.00 0.00 35.15 3.36
4124 4568 0.762418 TGCCACTTATATGGACCCCG 59.238 55.000 0.00 0.00 43.02 5.73
4125 4569 1.542547 CGTGCCACTTATATGGACCCC 60.543 57.143 0.00 0.00 43.02 4.95
4129 4577 1.269569 CGCTCGTGCCACTTATATGGA 60.270 52.381 3.52 0.00 43.02 3.41
4172 4620 8.094284 ACCATATCTAGCAATATTGGATAGCA 57.906 34.615 17.02 0.00 0.00 3.49
4182 4630 6.538945 TTATGCCGACCATATCTAGCAATA 57.461 37.500 0.00 0.00 37.67 1.90
4183 4631 3.988976 ATGCCGACCATATCTAGCAAT 57.011 42.857 0.00 0.00 37.67 3.56
4184 4632 4.882842 TTATGCCGACCATATCTAGCAA 57.117 40.909 0.00 0.00 37.67 3.91
4185 4633 4.039852 TGTTTATGCCGACCATATCTAGCA 59.960 41.667 0.00 0.00 38.27 3.49
4186 4634 4.389077 GTGTTTATGCCGACCATATCTAGC 59.611 45.833 0.00 0.00 36.35 3.42
4187 4635 4.621460 CGTGTTTATGCCGACCATATCTAG 59.379 45.833 0.00 0.00 36.35 2.43
4192 6952 2.963548 TCGTGTTTATGCCGACCATA 57.036 45.000 0.00 0.00 35.34 2.74
4243 7003 4.248859 CAAACCGTCTGAGATGAGTGATT 58.751 43.478 2.61 0.00 0.00 2.57
4259 7019 1.112916 AACCAAAGGAGGCCAAACCG 61.113 55.000 5.01 0.00 46.52 4.44
4265 7025 3.297134 TCATATGAACCAAAGGAGGCC 57.703 47.619 1.98 0.00 0.00 5.19
4285 7045 9.965902 CCTATCCTTTGCAATTCCTACTATATT 57.034 33.333 0.00 0.00 0.00 1.28
4286 7046 9.338968 TCCTATCCTTTGCAATTCCTACTATAT 57.661 33.333 0.00 0.00 0.00 0.86
4288 7048 7.633018 TCCTATCCTTTGCAATTCCTACTAT 57.367 36.000 0.00 0.00 0.00 2.12
4290 7050 5.975988 TCCTATCCTTTGCAATTCCTACT 57.024 39.130 0.00 0.00 0.00 2.57
4291 7051 6.122964 AGTTCCTATCCTTTGCAATTCCTAC 58.877 40.000 0.00 0.00 0.00 3.18
4292 7052 6.327386 AGTTCCTATCCTTTGCAATTCCTA 57.673 37.500 0.00 0.00 0.00 2.94
4293 7053 5.198602 AGTTCCTATCCTTTGCAATTCCT 57.801 39.130 0.00 0.00 0.00 3.36
4294 7054 5.921962 AAGTTCCTATCCTTTGCAATTCC 57.078 39.130 0.00 0.00 0.00 3.01
4305 7065 9.803315 GGAATTTTTCATACAAAGTTCCTATCC 57.197 33.333 11.29 0.00 43.91 2.59
4311 7071 9.541143 TCCAAAGGAATTTTTCATACAAAGTTC 57.459 29.630 0.00 0.00 33.67 3.01
4312 7072 9.546428 CTCCAAAGGAATTTTTCATACAAAGTT 57.454 29.630 0.00 0.00 0.00 2.66
4313 7073 7.657354 GCTCCAAAGGAATTTTTCATACAAAGT 59.343 33.333 0.00 0.00 0.00 2.66
4314 7074 7.118245 GGCTCCAAAGGAATTTTTCATACAAAG 59.882 37.037 0.00 0.00 0.00 2.77
4315 7075 6.934083 GGCTCCAAAGGAATTTTTCATACAAA 59.066 34.615 0.00 0.00 0.00 2.83
4316 7076 6.463360 GGCTCCAAAGGAATTTTTCATACAA 58.537 36.000 0.00 0.00 0.00 2.41
4317 7077 5.046663 GGGCTCCAAAGGAATTTTTCATACA 60.047 40.000 0.00 0.00 0.00 2.29
4318 7078 5.419542 GGGCTCCAAAGGAATTTTTCATAC 58.580 41.667 0.00 0.00 0.00 2.39
4319 7079 5.675684 GGGCTCCAAAGGAATTTTTCATA 57.324 39.130 0.00 0.00 0.00 2.15
4320 7080 4.558226 GGGCTCCAAAGGAATTTTTCAT 57.442 40.909 0.00 0.00 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.