Multiple sequence alignment - TraesCS2D01G556300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G556300 chr2D 100.000 3366 0 0 1 3366 630012204 630008839 0.000000e+00 6216.0
1 TraesCS2D01G556300 chr2D 90.992 1543 118 11 1000 2531 2770638 2769106 0.000000e+00 2060.0
2 TraesCS2D01G556300 chr2D 82.168 1402 206 30 976 2351 13508825 13510208 0.000000e+00 1164.0
3 TraesCS2D01G556300 chr2D 77.573 1409 249 41 976 2362 13483015 13481652 0.000000e+00 789.0
4 TraesCS2D01G556300 chr2D 97.248 436 12 0 354 789 537439235 537438800 0.000000e+00 739.0
5 TraesCS2D01G556300 chr2D 96.970 297 9 0 1 297 578644771 578644475 1.800000e-137 499.0
6 TraesCS2D01G556300 chr2D 96.633 297 7 2 1 297 630014374 630014667 1.090000e-134 490.0
7 TraesCS2D01G556300 chr2D 95.623 297 12 1 1 297 194678174 194677879 3.040000e-130 475.0
8 TraesCS2D01G556300 chr2D 89.286 252 18 5 1000 1242 13439674 13439423 1.170000e-79 307.0
9 TraesCS2D01G556300 chr2D 84.848 297 41 4 4 298 128971219 128971513 2.540000e-76 296.0
10 TraesCS2D01G556300 chr2D 93.827 81 5 0 811 891 537438677 537438597 4.560000e-24 122.0
11 TraesCS2D01G556300 chr2B 97.355 1815 41 3 890 2702 772982357 772980548 0.000000e+00 3079.0
12 TraesCS2D01G556300 chr2B 93.962 1093 63 3 1207 2297 8507286 8508377 0.000000e+00 1650.0
13 TraesCS2D01G556300 chr2B 84.225 1439 182 25 951 2366 24098731 24097315 0.000000e+00 1358.0
14 TraesCS2D01G556300 chr2B 81.766 1404 211 30 976 2351 24217012 24218398 0.000000e+00 1133.0
15 TraesCS2D01G556300 chr2B 89.127 653 56 7 1279 1927 7805544 7806185 0.000000e+00 798.0
16 TraesCS2D01G556300 chr2B 89.127 653 56 7 1279 1927 8241071 8241712 0.000000e+00 798.0
17 TraesCS2D01G556300 chr2B 97.333 450 11 1 2918 3366 772980503 772980054 0.000000e+00 763.0
18 TraesCS2D01G556300 chr2B 89.418 378 35 2 1279 1652 7927682 7928058 3.930000e-129 472.0
19 TraesCS2D01G556300 chr2B 87.335 379 41 6 2990 3366 7813284 7813657 8.630000e-116 427.0
20 TraesCS2D01G556300 chr2B 86.280 379 37 9 2990 3366 8248716 8249081 6.770000e-107 398.0
21 TraesCS2D01G556300 chr2B 92.202 218 16 1 985 1202 8500491 8500707 1.170000e-79 307.0
22 TraesCS2D01G556300 chr2B 81.934 393 27 17 2456 2840 7811458 7811814 3.280000e-75 292.0
23 TraesCS2D01G556300 chr2B 80.662 393 29 19 2456 2840 8247021 8247374 9.260000e-66 261.0
24 TraesCS2D01G556300 chr2B 87.442 215 20 4 2590 2800 9108612 9108401 1.210000e-59 241.0
25 TraesCS2D01G556300 chr2B 80.453 353 30 14 2482 2820 8508479 8508806 2.020000e-57 233.0
26 TraesCS2D01G556300 chr2B 90.323 93 9 0 3229 3321 9108401 9108309 4.560000e-24 122.0
27 TraesCS2D01G556300 chr2B 98.361 61 1 0 297 357 772982416 772982356 1.280000e-19 108.0
28 TraesCS2D01G556300 chr2B 91.228 57 3 1 2408 2462 8241859 8241915 3.600000e-10 76.8
29 TraesCS2D01G556300 chr2A 93.291 954 55 2 1000 1953 2895356 2896300 0.000000e+00 1399.0
30 TraesCS2D01G556300 chr2A 81.922 1405 207 33 976 2351 15602437 15603823 0.000000e+00 1144.0
31 TraesCS2D01G556300 chr2A 91.386 743 49 4 1000 1730 2839125 2839864 0.000000e+00 1003.0
32 TraesCS2D01G556300 chr2A 84.359 991 135 12 1384 2366 15449657 15448679 0.000000e+00 953.0
33 TraesCS2D01G556300 chr2A 79.672 1402 223 42 1000 2357 15460259 15458876 0.000000e+00 953.0
34 TraesCS2D01G556300 chr2A 90.853 645 42 11 1720 2362 2854082 2854711 0.000000e+00 848.0
35 TraesCS2D01G556300 chr2A 93.349 436 29 0 354 789 4364970 4365405 0.000000e+00 645.0
36 TraesCS2D01G556300 chr2A 95.531 358 15 1 1998 2355 2896308 2896664 3.770000e-159 571.0
37 TraesCS2D01G556300 chr2A 80.742 701 67 31 2590 3271 2856238 2856889 5.050000e-133 484.0
38 TraesCS2D01G556300 chr2A 82.379 454 49 21 2933 3366 2897226 2897668 1.910000e-97 366.0
39 TraesCS2D01G556300 chr2A 86.864 236 22 4 2590 2821 2896976 2897206 4.310000e-64 255.0
40 TraesCS2D01G556300 chr2A 89.412 85 5 1 811 891 4365526 4365610 1.650000e-18 104.0
41 TraesCS2D01G556300 chr6D 97.477 436 11 0 354 789 452111072 452110637 0.000000e+00 745.0
42 TraesCS2D01G556300 chr6D 89.474 437 45 1 354 789 70785205 70784769 4.910000e-153 551.0
43 TraesCS2D01G556300 chr6D 97.651 298 7 0 2 299 97224030 97224327 2.320000e-141 512.0
44 TraesCS2D01G556300 chr6D 95.062 81 4 0 811 891 452110514 452110434 9.800000e-26 128.0
45 TraesCS2D01G556300 chr6D 100.000 30 0 0 2496 2525 217961431 217961402 4.690000e-04 56.5
46 TraesCS2D01G556300 chr1D 97.248 436 12 0 354 789 427373017 427372582 0.000000e+00 739.0
47 TraesCS2D01G556300 chr1D 97.531 81 2 0 811 891 427372459 427372379 4.530000e-29 139.0
48 TraesCS2D01G556300 chr7D 97.018 436 13 0 354 789 84170764 84170329 0.000000e+00 734.0
49 TraesCS2D01G556300 chr7D 96.560 436 14 1 354 789 23072903 23072469 0.000000e+00 721.0
50 TraesCS2D01G556300 chr7D 89.701 301 26 5 1 298 234186414 234186116 2.450000e-101 379.0
51 TraesCS2D01G556300 chr7D 100.000 30 0 0 2496 2525 202243572 202243543 4.690000e-04 56.5
52 TraesCS2D01G556300 chr6A 95.872 436 18 0 354 789 13361906 13361471 0.000000e+00 706.0
53 TraesCS2D01G556300 chr7A 94.725 436 23 0 354 789 730799181 730799616 0.000000e+00 678.0
54 TraesCS2D01G556300 chrUn 83.357 709 72 19 2145 2824 15427749 15428440 6.170000e-172 614.0
55 TraesCS2D01G556300 chrUn 83.239 710 71 26 2145 2824 15736523 15735832 2.870000e-170 608.0
56 TraesCS2D01G556300 chrUn 83.239 710 71 26 2145 2824 274166999 274167690 2.870000e-170 608.0
57 TraesCS2D01G556300 chrUn 83.099 710 72 26 2145 2824 15585363 15586054 1.340000e-168 603.0
58 TraesCS2D01G556300 chrUn 85.609 271 19 9 2933 3187 15428502 15428768 1.990000e-67 267.0
59 TraesCS2D01G556300 chrUn 85.609 271 19 9 2933 3187 274167752 274168018 1.990000e-67 267.0
60 TraesCS2D01G556300 chrUn 85.240 271 20 9 2933 3187 15586116 15586382 9.260000e-66 261.0
61 TraesCS2D01G556300 chrUn 85.240 271 20 9 2933 3187 15735770 15735504 9.260000e-66 261.0
62 TraesCS2D01G556300 chrUn 89.474 76 7 1 3291 3366 15586395 15586469 9.940000e-16 95.3
63 TraesCS2D01G556300 chrUn 89.474 76 7 1 3291 3366 15735491 15735417 9.940000e-16 95.3
64 TraesCS2D01G556300 chrUn 89.474 76 7 1 3291 3366 274168031 274168105 9.940000e-16 95.3
65 TraesCS2D01G556300 chr1A 87.625 299 34 3 1 298 575629963 575630259 8.940000e-91 344.0
66 TraesCS2D01G556300 chr5A 86.913 298 38 1 1 297 528951741 528952038 1.940000e-87 333.0
67 TraesCS2D01G556300 chr5A 86.333 300 36 4 1 297 35062663 35062366 4.190000e-84 322.0
68 TraesCS2D01G556300 chr7B 81.538 260 31 6 1071 1330 25067016 25066774 7.370000e-47 198.0
69 TraesCS2D01G556300 chr1B 89.873 79 8 0 811 889 464117787 464117709 5.940000e-18 102.0
70 TraesCS2D01G556300 chr3A 100.000 30 0 0 2496 2525 371735843 371735872 4.690000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G556300 chr2D 630008839 630012204 3365 True 6216.000000 6216 100.000000 1 3366 1 chr2D.!!$R6 3365
1 TraesCS2D01G556300 chr2D 2769106 2770638 1532 True 2060.000000 2060 90.992000 1000 2531 1 chr2D.!!$R1 1531
2 TraesCS2D01G556300 chr2D 13508825 13510208 1383 False 1164.000000 1164 82.168000 976 2351 1 chr2D.!!$F1 1375
3 TraesCS2D01G556300 chr2D 13481652 13483015 1363 True 789.000000 789 77.573000 976 2362 1 chr2D.!!$R3 1386
4 TraesCS2D01G556300 chr2D 537438597 537439235 638 True 430.500000 739 95.537500 354 891 2 chr2D.!!$R7 537
5 TraesCS2D01G556300 chr2B 24097315 24098731 1416 True 1358.000000 1358 84.225000 951 2366 1 chr2B.!!$R1 1415
6 TraesCS2D01G556300 chr2B 772980054 772982416 2362 True 1316.666667 3079 97.683000 297 3366 3 chr2B.!!$R3 3069
7 TraesCS2D01G556300 chr2B 24217012 24218398 1386 False 1133.000000 1133 81.766000 976 2351 1 chr2B.!!$F4 1375
8 TraesCS2D01G556300 chr2B 8507286 8508806 1520 False 941.500000 1650 87.207500 1207 2820 2 chr2B.!!$F8 1613
9 TraesCS2D01G556300 chr2B 7805544 7806185 641 False 798.000000 798 89.127000 1279 1927 1 chr2B.!!$F1 648
10 TraesCS2D01G556300 chr2B 8241071 8241915 844 False 437.400000 798 90.177500 1279 2462 2 chr2B.!!$F6 1183
11 TraesCS2D01G556300 chr2B 7811458 7813657 2199 False 359.500000 427 84.634500 2456 3366 2 chr2B.!!$F5 910
12 TraesCS2D01G556300 chr2B 8247021 8249081 2060 False 329.500000 398 83.471000 2456 3366 2 chr2B.!!$F7 910
13 TraesCS2D01G556300 chr2A 15602437 15603823 1386 False 1144.000000 1144 81.922000 976 2351 1 chr2A.!!$F2 1375
14 TraesCS2D01G556300 chr2A 2839125 2839864 739 False 1003.000000 1003 91.386000 1000 1730 1 chr2A.!!$F1 730
15 TraesCS2D01G556300 chr2A 15448679 15449657 978 True 953.000000 953 84.359000 1384 2366 1 chr2A.!!$R1 982
16 TraesCS2D01G556300 chr2A 15458876 15460259 1383 True 953.000000 953 79.672000 1000 2357 1 chr2A.!!$R2 1357
17 TraesCS2D01G556300 chr2A 2854082 2856889 2807 False 666.000000 848 85.797500 1720 3271 2 chr2A.!!$F3 1551
18 TraesCS2D01G556300 chr2A 2895356 2897668 2312 False 647.750000 1399 89.516250 1000 3366 4 chr2A.!!$F4 2366
19 TraesCS2D01G556300 chr2A 4364970 4365610 640 False 374.500000 645 91.380500 354 891 2 chr2A.!!$F5 537
20 TraesCS2D01G556300 chr6D 452110434 452111072 638 True 436.500000 745 96.269500 354 891 2 chr6D.!!$R3 537
21 TraesCS2D01G556300 chr1D 427372379 427373017 638 True 439.000000 739 97.389500 354 891 2 chr1D.!!$R1 537
22 TraesCS2D01G556300 chrUn 15427749 15428768 1019 False 440.500000 614 84.483000 2145 3187 2 chrUn.!!$F1 1042
23 TraesCS2D01G556300 chrUn 274166999 274168105 1106 False 323.433333 608 86.107333 2145 3366 3 chrUn.!!$F3 1221
24 TraesCS2D01G556300 chrUn 15735417 15736523 1106 True 321.433333 608 85.984333 2145 3366 3 chrUn.!!$R1 1221
25 TraesCS2D01G556300 chrUn 15585363 15586469 1106 False 319.766667 603 85.937667 2145 3366 3 chrUn.!!$F2 1221

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
259 260 0.106918 ACGAGTGGTCCTTTTTGGCA 60.107 50.0 0.0 0.0 35.26 4.92 F
679 680 0.450583 CTACGGCGCTCTTACAGTCA 59.549 55.0 6.9 0.0 0.00 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1933 2002 1.697082 TTGCCCACGTAACCCTGTGA 61.697 55.000 0.0 0.0 38.36 3.58 R
2567 4049 1.936547 CTAAGACGCTGGGCTGATTTC 59.063 52.381 0.0 0.0 0.00 2.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
80 81 4.410400 CCACTCCTGGCCCGTTCC 62.410 72.222 0.00 0.00 0.00 3.62
81 82 4.760047 CACTCCTGGCCCGTTCCG 62.760 72.222 0.00 0.00 0.00 4.30
83 84 4.016706 CTCCTGGCCCGTTCCGTT 62.017 66.667 0.00 0.00 0.00 4.44
84 85 3.952628 CTCCTGGCCCGTTCCGTTC 62.953 68.421 0.00 0.00 0.00 3.95
86 87 4.323477 CTGGCCCGTTCCGTTCCA 62.323 66.667 0.00 0.00 0.00 3.53
87 88 4.323477 TGGCCCGTTCCGTTCCAG 62.323 66.667 0.00 0.00 0.00 3.86
90 91 4.323477 CCCGTTCCGTTCCAGCCA 62.323 66.667 0.00 0.00 0.00 4.75
91 92 3.047877 CCGTTCCGTTCCAGCCAC 61.048 66.667 0.00 0.00 0.00 5.01
92 93 3.411351 CGTTCCGTTCCAGCCACG 61.411 66.667 0.00 0.00 37.39 4.94
93 94 3.723348 GTTCCGTTCCAGCCACGC 61.723 66.667 0.00 0.00 36.27 5.34
97 98 4.988598 CGTTCCAGCCACGCCACT 62.989 66.667 0.00 0.00 0.00 4.00
98 99 3.357079 GTTCCAGCCACGCCACTG 61.357 66.667 0.00 0.00 0.00 3.66
99 100 3.872603 TTCCAGCCACGCCACTGT 61.873 61.111 0.00 0.00 31.76 3.55
100 101 4.624364 TCCAGCCACGCCACTGTG 62.624 66.667 0.00 0.00 39.60 3.66
109 110 2.890474 GCCACTGTGCGATACCCG 60.890 66.667 1.29 0.00 42.21 5.28
110 111 2.577059 CCACTGTGCGATACCCGT 59.423 61.111 1.29 0.00 41.15 5.28
111 112 1.079405 CCACTGTGCGATACCCGTT 60.079 57.895 1.29 0.00 41.15 4.44
112 113 1.358725 CCACTGTGCGATACCCGTTG 61.359 60.000 1.29 0.00 41.15 4.10
113 114 0.669318 CACTGTGCGATACCCGTTGT 60.669 55.000 0.00 0.00 41.15 3.32
114 115 0.669318 ACTGTGCGATACCCGTTGTG 60.669 55.000 0.00 0.00 41.15 3.33
115 116 0.389296 CTGTGCGATACCCGTTGTGA 60.389 55.000 0.00 0.00 41.15 3.58
116 117 0.668096 TGTGCGATACCCGTTGTGAC 60.668 55.000 0.00 0.00 41.15 3.67
117 118 1.079681 TGCGATACCCGTTGTGACC 60.080 57.895 0.00 0.00 41.15 4.02
118 119 1.812507 GCGATACCCGTTGTGACCC 60.813 63.158 0.00 0.00 41.15 4.46
119 120 1.517694 CGATACCCGTTGTGACCCG 60.518 63.158 0.00 0.00 0.00 5.28
120 121 1.812507 GATACCCGTTGTGACCCGC 60.813 63.158 0.00 0.00 0.00 6.13
121 122 3.652539 ATACCCGTTGTGACCCGCG 62.653 63.158 0.00 0.00 0.00 6.46
186 187 2.587753 CGACAGGTGCCACGTGTT 60.588 61.111 22.53 8.23 45.85 3.32
187 188 2.881266 CGACAGGTGCCACGTGTTG 61.881 63.158 22.53 21.23 45.85 3.33
188 189 3.181169 GACAGGTGCCACGTGTTGC 62.181 63.158 22.53 12.30 45.85 4.17
189 190 3.964875 CAGGTGCCACGTGTTGCC 61.965 66.667 15.65 12.56 0.00 4.52
190 191 4.189580 AGGTGCCACGTGTTGCCT 62.190 61.111 15.65 14.61 0.00 4.75
191 192 3.964875 GGTGCCACGTGTTGCCTG 61.965 66.667 15.65 0.00 0.00 4.85
192 193 4.629115 GTGCCACGTGTTGCCTGC 62.629 66.667 15.65 9.99 0.00 4.85
212 213 4.760047 CGCCTGCCGCCACTAGTT 62.760 66.667 0.00 0.00 0.00 2.24
213 214 2.582436 GCCTGCCGCCACTAGTTA 59.418 61.111 0.00 0.00 0.00 2.24
214 215 1.521681 GCCTGCCGCCACTAGTTAG 60.522 63.158 0.00 0.00 0.00 2.34
215 216 1.144057 CCTGCCGCCACTAGTTAGG 59.856 63.158 0.00 0.00 0.00 2.69
216 217 1.144057 CTGCCGCCACTAGTTAGGG 59.856 63.158 0.00 0.00 0.00 3.53
223 224 2.265526 CCACTAGTTAGGGGGTCCTT 57.734 55.000 0.00 0.00 43.33 3.36
224 225 2.558974 CCACTAGTTAGGGGGTCCTTT 58.441 52.381 0.00 0.00 43.33 3.11
225 226 2.917600 CCACTAGTTAGGGGGTCCTTTT 59.082 50.000 0.00 0.00 43.33 2.27
226 227 3.332783 CCACTAGTTAGGGGGTCCTTTTT 59.667 47.826 0.00 0.00 43.33 1.94
227 228 4.332828 CACTAGTTAGGGGGTCCTTTTTG 58.667 47.826 0.00 0.00 41.56 2.44
228 229 3.985452 ACTAGTTAGGGGGTCCTTTTTGT 59.015 43.478 0.00 0.00 41.56 2.83
229 230 3.520691 AGTTAGGGGGTCCTTTTTGTC 57.479 47.619 0.00 0.00 41.56 3.18
230 231 2.109480 AGTTAGGGGGTCCTTTTTGTCC 59.891 50.000 0.00 0.00 41.56 4.02
231 232 1.835895 TAGGGGGTCCTTTTTGTCCA 58.164 50.000 0.00 0.00 41.56 4.02
232 233 1.167033 AGGGGGTCCTTTTTGTCCAT 58.833 50.000 0.00 0.00 41.56 3.41
233 234 2.364190 AGGGGGTCCTTTTTGTCCATA 58.636 47.619 0.00 0.00 41.56 2.74
234 235 2.933139 AGGGGGTCCTTTTTGTCCATAT 59.067 45.455 0.00 0.00 41.56 1.78
235 236 3.339742 AGGGGGTCCTTTTTGTCCATATT 59.660 43.478 0.00 0.00 41.56 1.28
236 237 4.101114 GGGGGTCCTTTTTGTCCATATTT 58.899 43.478 0.00 0.00 0.00 1.40
237 238 4.534500 GGGGGTCCTTTTTGTCCATATTTT 59.466 41.667 0.00 0.00 0.00 1.82
238 239 5.338056 GGGGGTCCTTTTTGTCCATATTTTC 60.338 44.000 0.00 0.00 0.00 2.29
239 240 5.407502 GGGTCCTTTTTGTCCATATTTTCG 58.592 41.667 0.00 0.00 0.00 3.46
240 241 5.184287 GGGTCCTTTTTGTCCATATTTTCGA 59.816 40.000 0.00 0.00 0.00 3.71
241 242 6.090783 GGTCCTTTTTGTCCATATTTTCGAC 58.909 40.000 0.00 0.00 0.00 4.20
242 243 5.793457 GTCCTTTTTGTCCATATTTTCGACG 59.207 40.000 0.00 0.00 0.00 5.12
243 244 5.701750 TCCTTTTTGTCCATATTTTCGACGA 59.298 36.000 0.00 0.00 0.00 4.20
244 245 6.021596 CCTTTTTGTCCATATTTTCGACGAG 58.978 40.000 0.00 0.00 0.00 4.18
245 246 6.348213 CCTTTTTGTCCATATTTTCGACGAGT 60.348 38.462 0.00 0.00 0.00 4.18
246 247 5.524511 TTTGTCCATATTTTCGACGAGTG 57.475 39.130 0.00 0.00 0.00 3.51
247 248 3.517602 TGTCCATATTTTCGACGAGTGG 58.482 45.455 0.00 3.63 0.00 4.00
248 249 3.056393 TGTCCATATTTTCGACGAGTGGT 60.056 43.478 0.00 0.00 0.00 4.16
249 250 3.550678 GTCCATATTTTCGACGAGTGGTC 59.449 47.826 0.00 0.00 42.48 4.02
250 251 2.864343 CCATATTTTCGACGAGTGGTCC 59.136 50.000 0.00 0.00 42.99 4.46
251 252 3.430374 CCATATTTTCGACGAGTGGTCCT 60.430 47.826 0.00 0.00 42.99 3.85
252 253 2.833631 ATTTTCGACGAGTGGTCCTT 57.166 45.000 0.00 0.00 42.99 3.36
253 254 2.607631 TTTTCGACGAGTGGTCCTTT 57.392 45.000 0.00 0.00 42.99 3.11
254 255 2.607631 TTTCGACGAGTGGTCCTTTT 57.392 45.000 0.00 0.00 42.99 2.27
255 256 2.607631 TTCGACGAGTGGTCCTTTTT 57.392 45.000 0.00 0.00 42.99 1.94
256 257 1.860676 TCGACGAGTGGTCCTTTTTG 58.139 50.000 0.00 0.00 42.99 2.44
257 258 0.865769 CGACGAGTGGTCCTTTTTGG 59.134 55.000 0.00 0.00 42.99 3.28
258 259 0.591659 GACGAGTGGTCCTTTTTGGC 59.408 55.000 0.00 0.00 39.90 4.52
259 260 0.106918 ACGAGTGGTCCTTTTTGGCA 60.107 50.000 0.00 0.00 35.26 4.92
260 261 1.028905 CGAGTGGTCCTTTTTGGCAA 58.971 50.000 0.00 0.00 35.26 4.52
261 262 1.613437 CGAGTGGTCCTTTTTGGCAAT 59.387 47.619 0.00 0.00 35.26 3.56
262 263 2.035832 CGAGTGGTCCTTTTTGGCAATT 59.964 45.455 0.00 0.00 35.26 2.32
263 264 3.653344 GAGTGGTCCTTTTTGGCAATTC 58.347 45.455 0.00 0.00 35.26 2.17
264 265 3.308401 AGTGGTCCTTTTTGGCAATTCT 58.692 40.909 0.00 0.00 35.26 2.40
265 266 3.070015 AGTGGTCCTTTTTGGCAATTCTG 59.930 43.478 0.00 0.00 35.26 3.02
266 267 3.037549 TGGTCCTTTTTGGCAATTCTGT 58.962 40.909 0.00 0.00 35.26 3.41
267 268 3.454082 TGGTCCTTTTTGGCAATTCTGTT 59.546 39.130 0.00 0.00 35.26 3.16
268 269 3.809279 GGTCCTTTTTGGCAATTCTGTTG 59.191 43.478 0.00 0.00 35.26 3.33
269 270 3.809279 GTCCTTTTTGGCAATTCTGTTGG 59.191 43.478 0.00 0.00 35.26 3.77
270 271 2.549329 CCTTTTTGGCAATTCTGTTGGC 59.451 45.455 0.00 7.31 44.16 4.52
271 272 2.252976 TTTTGGCAATTCTGTTGGCC 57.747 45.000 0.00 0.00 46.58 5.36
274 275 1.593265 GGCAATTCTGTTGGCCAGG 59.407 57.895 5.11 0.23 45.70 4.45
275 276 1.593265 GCAATTCTGTTGGCCAGGG 59.407 57.895 5.11 0.00 41.83 4.45
276 277 1.891722 GCAATTCTGTTGGCCAGGGG 61.892 60.000 5.11 0.00 41.83 4.79
277 278 1.079073 AATTCTGTTGGCCAGGGGG 59.921 57.895 5.11 0.00 41.83 5.40
278 279 1.739608 AATTCTGTTGGCCAGGGGGT 61.740 55.000 5.11 0.00 41.83 4.95
279 280 2.155197 ATTCTGTTGGCCAGGGGGTC 62.155 60.000 5.11 0.00 41.83 4.46
280 281 4.366684 CTGTTGGCCAGGGGGTCC 62.367 72.222 5.11 0.00 38.32 4.46
281 282 4.938756 TGTTGGCCAGGGGGTCCT 62.939 66.667 5.11 0.00 46.26 3.85
282 283 3.590574 GTTGGCCAGGGGGTCCTT 61.591 66.667 5.11 0.00 42.67 3.36
283 284 2.785389 TTGGCCAGGGGGTCCTTT 60.785 61.111 5.11 0.00 42.67 3.11
284 285 2.408203 TTGGCCAGGGGGTCCTTTT 61.408 57.895 5.11 0.00 42.67 2.27
285 286 2.283894 GGCCAGGGGGTCCTTTTG 60.284 66.667 0.00 0.00 42.67 2.44
286 287 2.283894 GCCAGGGGGTCCTTTTGG 60.284 66.667 0.00 0.00 42.67 3.28
287 288 2.852281 GCCAGGGGGTCCTTTTGGA 61.852 63.158 9.40 0.00 42.67 3.53
374 375 8.398665 GTGGGCTAAATTAGATAAAACTCAGTG 58.601 37.037 3.88 0.00 0.00 3.66
410 411 6.808008 TGCTGAAAGGAAAAGAAGTCATAG 57.192 37.500 0.00 0.00 0.00 2.23
426 427 2.313749 ATAGGACAGGAGGGGTCGGG 62.314 65.000 0.00 0.00 36.12 5.14
465 466 4.627058 GGAAAGAGTATTCAGGAGCTAGC 58.373 47.826 6.62 6.62 0.00 3.42
543 544 3.799755 GGAATCACACACGGCGGC 61.800 66.667 13.24 0.00 0.00 6.53
663 664 0.527169 GCTCGGGAAGGCGTTACTAC 60.527 60.000 0.64 0.00 0.00 2.73
672 673 4.779819 CGTTACTACGGCGCTCTT 57.220 55.556 6.90 0.00 43.94 2.85
673 674 3.903876 CGTTACTACGGCGCTCTTA 57.096 52.632 6.90 0.00 43.94 2.10
674 675 1.460766 CGTTACTACGGCGCTCTTAC 58.539 55.000 6.90 0.00 43.94 2.34
675 676 1.202065 CGTTACTACGGCGCTCTTACA 60.202 52.381 6.90 0.00 43.94 2.41
676 677 2.448219 GTTACTACGGCGCTCTTACAG 58.552 52.381 6.90 0.00 0.00 2.74
677 678 1.742761 TACTACGGCGCTCTTACAGT 58.257 50.000 6.90 5.18 0.00 3.55
678 679 0.450983 ACTACGGCGCTCTTACAGTC 59.549 55.000 6.90 0.00 0.00 3.51
679 680 0.450583 CTACGGCGCTCTTACAGTCA 59.549 55.000 6.90 0.00 0.00 3.41
680 681 0.883153 TACGGCGCTCTTACAGTCAA 59.117 50.000 6.90 0.00 0.00 3.18
681 682 0.666577 ACGGCGCTCTTACAGTCAAC 60.667 55.000 6.90 0.00 0.00 3.18
682 683 0.666274 CGGCGCTCTTACAGTCAACA 60.666 55.000 7.64 0.00 0.00 3.33
683 684 0.790814 GGCGCTCTTACAGTCAACAC 59.209 55.000 7.64 0.00 0.00 3.32
684 685 1.605712 GGCGCTCTTACAGTCAACACT 60.606 52.381 7.64 0.00 0.00 3.55
693 694 1.959042 CAGTCAACACTGCCTCTTGT 58.041 50.000 0.00 0.00 43.77 3.16
694 695 2.292267 CAGTCAACACTGCCTCTTGTT 58.708 47.619 0.00 0.00 43.77 2.83
695 696 3.466836 CAGTCAACACTGCCTCTTGTTA 58.533 45.455 0.00 0.00 43.77 2.41
696 697 4.067896 CAGTCAACACTGCCTCTTGTTAT 58.932 43.478 0.00 0.00 43.77 1.89
697 698 4.516698 CAGTCAACACTGCCTCTTGTTATT 59.483 41.667 0.00 0.00 43.77 1.40
698 699 4.757149 AGTCAACACTGCCTCTTGTTATTC 59.243 41.667 0.00 0.00 34.12 1.75
699 700 4.515191 GTCAACACTGCCTCTTGTTATTCA 59.485 41.667 0.00 0.00 34.12 2.57
700 701 4.756642 TCAACACTGCCTCTTGTTATTCAG 59.243 41.667 0.00 0.00 34.12 3.02
701 702 4.623932 ACACTGCCTCTTGTTATTCAGA 57.376 40.909 0.00 0.00 0.00 3.27
702 703 4.319177 ACACTGCCTCTTGTTATTCAGAC 58.681 43.478 0.00 0.00 0.00 3.51
703 704 4.040952 ACACTGCCTCTTGTTATTCAGACT 59.959 41.667 0.00 0.00 0.00 3.24
704 705 4.391216 CACTGCCTCTTGTTATTCAGACTG 59.609 45.833 0.00 0.00 0.00 3.51
705 706 4.284490 ACTGCCTCTTGTTATTCAGACTGA 59.716 41.667 0.00 0.00 0.00 3.41
706 707 5.046014 ACTGCCTCTTGTTATTCAGACTGAT 60.046 40.000 5.87 0.00 0.00 2.90
707 708 5.809001 TGCCTCTTGTTATTCAGACTGATT 58.191 37.500 5.87 5.53 0.00 2.57
708 709 5.645067 TGCCTCTTGTTATTCAGACTGATTG 59.355 40.000 5.87 0.00 0.00 2.67
709 710 5.645497 GCCTCTTGTTATTCAGACTGATTGT 59.355 40.000 5.87 0.00 0.00 2.71
710 711 6.402983 GCCTCTTGTTATTCAGACTGATTGTG 60.403 42.308 5.87 0.00 0.00 3.33
711 712 6.652481 CCTCTTGTTATTCAGACTGATTGTGT 59.348 38.462 5.87 0.00 0.00 3.72
712 713 7.819415 CCTCTTGTTATTCAGACTGATTGTGTA 59.181 37.037 5.87 0.00 0.00 2.90
713 714 9.376075 CTCTTGTTATTCAGACTGATTGTGTAT 57.624 33.333 5.87 0.00 0.00 2.29
714 715 9.371136 TCTTGTTATTCAGACTGATTGTGTATC 57.629 33.333 5.87 0.00 0.00 2.24
715 716 8.492673 TTGTTATTCAGACTGATTGTGTATCC 57.507 34.615 5.87 0.00 31.87 2.59
716 717 7.047891 TGTTATTCAGACTGATTGTGTATCCC 58.952 38.462 5.87 0.00 31.87 3.85
717 718 5.965033 ATTCAGACTGATTGTGTATCCCT 57.035 39.130 5.87 0.00 31.87 4.20
718 719 4.743057 TCAGACTGATTGTGTATCCCTG 57.257 45.455 0.00 0.00 31.87 4.45
719 720 3.452264 TCAGACTGATTGTGTATCCCTGG 59.548 47.826 0.00 0.00 31.87 4.45
720 721 3.198635 CAGACTGATTGTGTATCCCTGGT 59.801 47.826 0.00 0.00 31.87 4.00
721 722 4.405680 CAGACTGATTGTGTATCCCTGGTA 59.594 45.833 0.00 0.00 31.87 3.25
722 723 5.030147 AGACTGATTGTGTATCCCTGGTAA 58.970 41.667 0.00 0.00 31.87 2.85
723 724 5.487488 AGACTGATTGTGTATCCCTGGTAAA 59.513 40.000 0.00 0.00 31.87 2.01
724 725 5.745227 ACTGATTGTGTATCCCTGGTAAAG 58.255 41.667 0.00 0.00 31.87 1.85
725 726 5.110814 TGATTGTGTATCCCTGGTAAAGG 57.889 43.478 0.00 0.00 46.94 3.11
726 727 4.538490 TGATTGTGTATCCCTGGTAAAGGT 59.462 41.667 0.00 0.00 45.78 3.50
727 728 5.014755 TGATTGTGTATCCCTGGTAAAGGTT 59.985 40.000 0.00 0.00 45.78 3.50
728 729 5.327737 TTGTGTATCCCTGGTAAAGGTTT 57.672 39.130 0.00 0.00 45.78 3.27
729 730 5.327737 TGTGTATCCCTGGTAAAGGTTTT 57.672 39.130 0.00 0.00 45.78 2.43
730 731 5.074115 TGTGTATCCCTGGTAAAGGTTTTG 58.926 41.667 0.00 0.00 45.78 2.44
731 732 4.461431 GTGTATCCCTGGTAAAGGTTTTGG 59.539 45.833 0.00 0.00 45.78 3.28
732 733 4.354387 TGTATCCCTGGTAAAGGTTTTGGA 59.646 41.667 0.00 0.00 45.78 3.53
733 734 3.232720 TCCCTGGTAAAGGTTTTGGAC 57.767 47.619 0.00 0.00 45.78 4.02
734 735 2.514582 TCCCTGGTAAAGGTTTTGGACA 59.485 45.455 0.00 0.00 45.78 4.02
735 736 2.890945 CCCTGGTAAAGGTTTTGGACAG 59.109 50.000 0.00 0.00 45.78 3.51
736 737 3.562182 CCTGGTAAAGGTTTTGGACAGT 58.438 45.455 0.00 0.00 41.74 3.55
737 738 3.958147 CCTGGTAAAGGTTTTGGACAGTT 59.042 43.478 0.00 0.00 41.74 3.16
738 739 4.037565 CCTGGTAAAGGTTTTGGACAGTTC 59.962 45.833 0.00 0.00 41.74 3.01
739 740 4.601084 TGGTAAAGGTTTTGGACAGTTCA 58.399 39.130 0.00 0.00 0.00 3.18
740 741 4.642885 TGGTAAAGGTTTTGGACAGTTCAG 59.357 41.667 0.00 0.00 0.00 3.02
741 742 4.885325 GGTAAAGGTTTTGGACAGTTCAGA 59.115 41.667 0.00 0.00 0.00 3.27
742 743 5.008712 GGTAAAGGTTTTGGACAGTTCAGAG 59.991 44.000 0.00 0.00 0.00 3.35
743 744 4.503714 AAGGTTTTGGACAGTTCAGAGA 57.496 40.909 0.00 0.00 0.00 3.10
744 745 3.809905 AGGTTTTGGACAGTTCAGAGAC 58.190 45.455 0.00 0.00 0.00 3.36
745 746 3.199946 AGGTTTTGGACAGTTCAGAGACA 59.800 43.478 0.00 0.00 0.00 3.41
746 747 3.561725 GGTTTTGGACAGTTCAGAGACAG 59.438 47.826 0.00 0.00 0.00 3.51
747 748 4.442706 GTTTTGGACAGTTCAGAGACAGA 58.557 43.478 0.00 0.00 0.00 3.41
748 749 4.963318 TTTGGACAGTTCAGAGACAGAT 57.037 40.909 0.00 0.00 0.00 2.90
749 750 6.223852 GTTTTGGACAGTTCAGAGACAGATA 58.776 40.000 0.00 0.00 0.00 1.98
750 751 5.651387 TTGGACAGTTCAGAGACAGATAG 57.349 43.478 0.00 0.00 0.00 2.08
751 752 4.019858 TGGACAGTTCAGAGACAGATAGG 58.980 47.826 0.00 0.00 0.00 2.57
752 753 4.020543 GGACAGTTCAGAGACAGATAGGT 58.979 47.826 0.00 0.00 0.00 3.08
753 754 4.097286 GGACAGTTCAGAGACAGATAGGTC 59.903 50.000 0.00 0.00 38.08 3.85
754 755 3.692101 ACAGTTCAGAGACAGATAGGTCG 59.308 47.826 0.00 0.00 42.62 4.79
755 756 3.066064 CAGTTCAGAGACAGATAGGTCGG 59.934 52.174 0.00 0.00 42.62 4.79
756 757 2.350057 TCAGAGACAGATAGGTCGGG 57.650 55.000 0.00 0.00 42.62 5.14
757 758 1.844497 TCAGAGACAGATAGGTCGGGA 59.156 52.381 0.00 0.00 42.62 5.14
758 759 2.158740 TCAGAGACAGATAGGTCGGGAG 60.159 54.545 0.00 0.00 42.62 4.30
759 760 1.847737 AGAGACAGATAGGTCGGGAGT 59.152 52.381 0.00 0.00 42.62 3.85
760 761 3.047115 AGAGACAGATAGGTCGGGAGTA 58.953 50.000 0.00 0.00 42.62 2.59
761 762 3.458857 AGAGACAGATAGGTCGGGAGTAA 59.541 47.826 0.00 0.00 42.62 2.24
762 763 3.816523 GAGACAGATAGGTCGGGAGTAAG 59.183 52.174 0.00 0.00 42.62 2.34
763 764 3.202595 AGACAGATAGGTCGGGAGTAAGT 59.797 47.826 0.00 0.00 42.62 2.24
764 765 3.553904 ACAGATAGGTCGGGAGTAAGTC 58.446 50.000 0.00 0.00 0.00 3.01
765 766 3.053842 ACAGATAGGTCGGGAGTAAGTCA 60.054 47.826 0.00 0.00 0.00 3.41
766 767 4.145807 CAGATAGGTCGGGAGTAAGTCAT 58.854 47.826 0.00 0.00 0.00 3.06
767 768 4.216687 CAGATAGGTCGGGAGTAAGTCATC 59.783 50.000 0.00 0.00 0.00 2.92
768 769 2.830651 AGGTCGGGAGTAAGTCATCT 57.169 50.000 0.00 0.00 0.00 2.90
769 770 2.379972 AGGTCGGGAGTAAGTCATCTG 58.620 52.381 0.00 0.00 0.00 2.90
770 771 1.409427 GGTCGGGAGTAAGTCATCTGG 59.591 57.143 0.00 0.00 0.00 3.86
771 772 2.100989 GTCGGGAGTAAGTCATCTGGT 58.899 52.381 0.00 0.00 0.00 4.00
772 773 3.285484 GTCGGGAGTAAGTCATCTGGTA 58.715 50.000 0.00 0.00 0.00 3.25
773 774 3.698040 GTCGGGAGTAAGTCATCTGGTAA 59.302 47.826 0.00 0.00 0.00 2.85
774 775 4.159135 GTCGGGAGTAAGTCATCTGGTAAA 59.841 45.833 0.00 0.00 0.00 2.01
775 776 4.960469 TCGGGAGTAAGTCATCTGGTAAAT 59.040 41.667 0.00 0.00 0.00 1.40
776 777 5.050490 CGGGAGTAAGTCATCTGGTAAATG 58.950 45.833 0.00 0.00 0.00 2.32
777 778 5.163447 CGGGAGTAAGTCATCTGGTAAATGA 60.163 44.000 0.00 0.00 0.00 2.57
778 779 6.284459 GGGAGTAAGTCATCTGGTAAATGAG 58.716 44.000 0.00 0.00 33.94 2.90
779 780 6.098409 GGGAGTAAGTCATCTGGTAAATGAGA 59.902 42.308 0.00 0.00 33.94 3.27
780 781 6.981559 GGAGTAAGTCATCTGGTAAATGAGAC 59.018 42.308 0.00 0.00 33.94 3.36
781 782 7.147811 GGAGTAAGTCATCTGGTAAATGAGACT 60.148 40.741 0.00 0.00 33.94 3.24
782 783 8.824756 AGTAAGTCATCTGGTAAATGAGACTA 57.175 34.615 0.00 0.00 33.94 2.59
783 784 9.256228 AGTAAGTCATCTGGTAAATGAGACTAA 57.744 33.333 0.00 0.00 33.94 2.24
784 785 9.522804 GTAAGTCATCTGGTAAATGAGACTAAG 57.477 37.037 0.00 0.00 33.94 2.18
785 786 7.118496 AGTCATCTGGTAAATGAGACTAAGG 57.882 40.000 0.00 0.00 33.94 2.69
786 787 6.897966 AGTCATCTGGTAAATGAGACTAAGGA 59.102 38.462 0.00 0.00 33.94 3.36
787 788 7.069331 AGTCATCTGGTAAATGAGACTAAGGAG 59.931 40.741 0.00 0.00 33.94 3.69
788 789 5.599999 TCTGGTAAATGAGACTAAGGAGC 57.400 43.478 0.00 0.00 0.00 4.70
789 790 4.406003 TCTGGTAAATGAGACTAAGGAGCC 59.594 45.833 0.00 0.00 0.00 4.70
790 791 4.362677 TGGTAAATGAGACTAAGGAGCCT 58.637 43.478 0.00 0.00 0.00 4.58
791 792 4.783227 TGGTAAATGAGACTAAGGAGCCTT 59.217 41.667 7.01 7.01 39.83 4.35
792 793 5.119694 GGTAAATGAGACTAAGGAGCCTTG 58.880 45.833 11.94 4.89 37.47 3.61
793 794 2.998316 ATGAGACTAAGGAGCCTTGC 57.002 50.000 11.94 1.92 37.47 4.01
794 795 1.944177 TGAGACTAAGGAGCCTTGCT 58.056 50.000 11.94 6.46 43.88 3.91
795 796 3.101643 TGAGACTAAGGAGCCTTGCTA 57.898 47.619 11.94 0.00 39.88 3.49
796 797 3.441101 TGAGACTAAGGAGCCTTGCTAA 58.559 45.455 11.94 0.00 39.88 3.09
797 798 4.033709 TGAGACTAAGGAGCCTTGCTAAT 58.966 43.478 11.94 0.00 39.88 1.73
798 799 4.100189 TGAGACTAAGGAGCCTTGCTAATC 59.900 45.833 11.94 4.67 39.88 1.75
799 800 4.294347 AGACTAAGGAGCCTTGCTAATCT 58.706 43.478 11.94 4.83 39.88 2.40
800 801 4.100808 AGACTAAGGAGCCTTGCTAATCTG 59.899 45.833 11.94 0.00 39.88 2.90
801 802 3.777522 ACTAAGGAGCCTTGCTAATCTGT 59.222 43.478 11.94 0.00 39.88 3.41
802 803 2.998316 AGGAGCCTTGCTAATCTGTC 57.002 50.000 0.00 0.00 39.88 3.51
803 804 2.191400 AGGAGCCTTGCTAATCTGTCA 58.809 47.619 0.00 0.00 39.88 3.58
804 805 2.573462 AGGAGCCTTGCTAATCTGTCAA 59.427 45.455 0.00 0.00 39.88 3.18
805 806 2.941720 GGAGCCTTGCTAATCTGTCAAG 59.058 50.000 0.00 0.00 39.88 3.02
806 807 3.369892 GGAGCCTTGCTAATCTGTCAAGA 60.370 47.826 3.09 0.00 39.88 3.02
807 808 3.870419 GAGCCTTGCTAATCTGTCAAGAG 59.130 47.826 3.09 0.00 39.88 2.85
808 809 3.262915 AGCCTTGCTAATCTGTCAAGAGT 59.737 43.478 3.09 0.00 39.48 3.24
809 810 3.373439 GCCTTGCTAATCTGTCAAGAGTG 59.627 47.826 3.09 0.00 39.48 3.51
810 811 3.937706 CCTTGCTAATCTGTCAAGAGTGG 59.062 47.826 3.09 0.00 39.48 4.00
811 812 4.323028 CCTTGCTAATCTGTCAAGAGTGGA 60.323 45.833 3.09 0.00 39.48 4.02
812 813 5.426504 CTTGCTAATCTGTCAAGAGTGGAT 58.573 41.667 0.00 0.00 39.48 3.41
813 814 4.763073 TGCTAATCTGTCAAGAGTGGATG 58.237 43.478 0.00 0.00 35.37 3.51
814 815 3.559242 GCTAATCTGTCAAGAGTGGATGC 59.441 47.826 0.00 0.00 35.37 3.91
815 816 3.996921 AATCTGTCAAGAGTGGATGCT 57.003 42.857 0.00 0.00 35.37 3.79
816 817 3.540314 ATCTGTCAAGAGTGGATGCTC 57.460 47.619 0.00 0.00 35.37 4.26
817 818 2.533916 TCTGTCAAGAGTGGATGCTCT 58.466 47.619 0.00 0.00 46.82 4.09
824 825 1.484240 AGAGTGGATGCTCTTAGGTGC 59.516 52.381 0.00 0.00 42.69 5.01
825 826 1.484240 GAGTGGATGCTCTTAGGTGCT 59.516 52.381 0.47 0.00 33.63 4.40
826 827 2.695666 GAGTGGATGCTCTTAGGTGCTA 59.304 50.000 0.47 0.00 33.63 3.49
827 828 3.312890 AGTGGATGCTCTTAGGTGCTAT 58.687 45.455 0.47 0.00 33.63 2.97
828 829 3.323403 AGTGGATGCTCTTAGGTGCTATC 59.677 47.826 0.47 2.67 33.63 2.08
829 830 3.323403 GTGGATGCTCTTAGGTGCTATCT 59.677 47.826 0.47 0.00 33.63 1.98
830 831 3.323115 TGGATGCTCTTAGGTGCTATCTG 59.677 47.826 0.47 0.00 33.63 2.90
831 832 3.306641 GGATGCTCTTAGGTGCTATCTGG 60.307 52.174 0.47 0.00 33.63 3.86
832 833 1.414181 TGCTCTTAGGTGCTATCTGGC 59.586 52.381 0.47 0.00 33.63 4.85
833 834 1.414181 GCTCTTAGGTGCTATCTGGCA 59.586 52.381 0.00 0.00 40.15 4.92
834 835 2.547642 GCTCTTAGGTGCTATCTGGCAG 60.548 54.545 8.58 8.58 43.25 4.85
835 836 2.036992 CTCTTAGGTGCTATCTGGCAGG 59.963 54.545 15.73 0.00 43.25 4.85
836 837 1.765314 CTTAGGTGCTATCTGGCAGGT 59.235 52.381 15.73 10.75 43.25 4.00
837 838 1.123077 TAGGTGCTATCTGGCAGGTG 58.877 55.000 15.73 6.32 43.25 4.00
838 839 0.618680 AGGTGCTATCTGGCAGGTGA 60.619 55.000 15.73 0.00 43.25 4.02
839 840 0.462759 GGTGCTATCTGGCAGGTGAC 60.463 60.000 15.73 6.27 43.25 3.67
840 841 0.539051 GTGCTATCTGGCAGGTGACT 59.461 55.000 15.73 0.00 43.25 3.41
881 882 7.778470 ATTAATAAAGCTCTCTTTCCAGTCG 57.222 36.000 0.00 0.00 41.34 4.18
882 883 1.802069 AAAGCTCTCTTTCCAGTCGC 58.198 50.000 0.00 0.00 38.03 5.19
883 884 0.681733 AAGCTCTCTTTCCAGTCGCA 59.318 50.000 0.00 0.00 0.00 5.10
884 885 0.681733 AGCTCTCTTTCCAGTCGCAA 59.318 50.000 0.00 0.00 0.00 4.85
885 886 1.070758 AGCTCTCTTTCCAGTCGCAAA 59.929 47.619 0.00 0.00 0.00 3.68
886 887 1.873591 GCTCTCTTTCCAGTCGCAAAA 59.126 47.619 0.00 0.00 0.00 2.44
887 888 2.290641 GCTCTCTTTCCAGTCGCAAAAA 59.709 45.455 0.00 0.00 0.00 1.94
1067 1071 3.131223 CCGGAGTATCAAAAGAGCTCAGA 59.869 47.826 17.77 8.51 36.25 3.27
1111 1115 2.927856 TGACGCCATGGGACCTGT 60.928 61.111 15.13 0.00 0.00 4.00
1625 1673 2.837883 CGCCATTGCCTCCATTCGG 61.838 63.158 0.00 0.00 0.00 4.30
1696 1744 3.002583 TGCAGGACATGGCGAGGA 61.003 61.111 0.00 0.00 0.00 3.71
1704 1752 1.330655 ACATGGCGAGGAGGTTCGAT 61.331 55.000 0.00 0.00 43.03 3.59
1933 2002 0.893727 GACACGGGTGAAGGGCATTT 60.894 55.000 0.00 0.00 0.00 2.32
2381 2522 3.011257 GGTCTAGAGGAGGGCAGAGATAT 59.989 52.174 0.00 0.00 0.00 1.63
2382 2523 4.016444 GTCTAGAGGAGGGCAGAGATATG 58.984 52.174 0.00 0.00 0.00 1.78
2549 4031 3.876914 CAGGTTGCACTTTTGAGTCTGTA 59.123 43.478 0.00 0.00 0.00 2.74
2636 4124 7.438160 TCTTCGCCTAATTCATACTAACACATG 59.562 37.037 0.00 0.00 0.00 3.21
2685 4174 9.743937 CAAAATTTCCACACATAATTTTCGATG 57.256 29.630 0.00 0.00 38.63 3.84
2687 4176 6.825944 TTTCCACACATAATTTTCGATGGA 57.174 33.333 0.00 0.00 33.21 3.41
2689 4178 6.375945 TCCACACATAATTTTCGATGGATG 57.624 37.500 0.00 0.00 30.08 3.51
2709 4198 5.391629 GGATGTACCAATCAAAAGGACGAAC 60.392 44.000 0.00 0.00 38.79 3.95
2891 4391 4.783227 TCTATGCTCTAAAAGTCCCAACCT 59.217 41.667 0.00 0.00 0.00 3.50
2910 4410 1.672356 CTTCAGGTCAAGGCCCACG 60.672 63.158 0.00 0.00 0.00 4.94
3099 5950 4.242475 TCGTTAATCTCTGTGCATTTCGT 58.758 39.130 0.00 0.00 0.00 3.85
3120 5971 1.939934 TGGAGCGCGATGAAAATTAGG 59.060 47.619 12.10 0.00 0.00 2.69
3218 6074 8.546083 TGGCTTATATACAAAAACAATCCCAT 57.454 30.769 0.00 0.00 0.00 4.00
3225 6081 3.390639 ACAAAAACAATCCCATCTTGCCA 59.609 39.130 0.00 0.00 0.00 4.92
3236 6092 2.492881 CCATCTTGCCACAACAATAGCA 59.507 45.455 0.00 0.00 0.00 3.49
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
76 77 3.723348 GCGTGGCTGGAACGGAAC 61.723 66.667 0.00 0.00 41.31 3.62
80 81 4.988598 AGTGGCGTGGCTGGAACG 62.989 66.667 0.00 0.00 43.81 3.95
81 82 3.357079 CAGTGGCGTGGCTGGAAC 61.357 66.667 0.00 0.00 0.00 3.62
82 83 3.872603 ACAGTGGCGTGGCTGGAA 61.873 61.111 0.00 0.00 37.07 3.53
83 84 4.624364 CACAGTGGCGTGGCTGGA 62.624 66.667 0.00 0.00 37.07 3.86
92 93 2.890474 CGGGTATCGCACAGTGGC 60.890 66.667 1.84 0.00 0.00 5.01
93 94 1.079405 AACGGGTATCGCACAGTGG 60.079 57.895 1.84 0.00 43.89 4.00
94 95 0.669318 ACAACGGGTATCGCACAGTG 60.669 55.000 0.00 0.00 43.89 3.66
95 96 0.669318 CACAACGGGTATCGCACAGT 60.669 55.000 0.00 0.00 43.89 3.55
96 97 0.389296 TCACAACGGGTATCGCACAG 60.389 55.000 0.00 0.00 43.89 3.66
97 98 0.668096 GTCACAACGGGTATCGCACA 60.668 55.000 0.00 0.00 43.89 4.57
98 99 1.356527 GGTCACAACGGGTATCGCAC 61.357 60.000 0.00 0.00 43.89 5.34
99 100 1.079681 GGTCACAACGGGTATCGCA 60.080 57.895 0.00 0.00 43.89 5.10
100 101 1.812507 GGGTCACAACGGGTATCGC 60.813 63.158 0.00 0.00 43.89 4.58
101 102 1.517694 CGGGTCACAACGGGTATCG 60.518 63.158 0.00 0.00 45.88 2.92
102 103 1.812507 GCGGGTCACAACGGGTATC 60.813 63.158 0.00 0.00 0.00 2.24
103 104 2.266689 GCGGGTCACAACGGGTAT 59.733 61.111 0.00 0.00 0.00 2.73
104 105 4.360964 CGCGGGTCACAACGGGTA 62.361 66.667 0.00 0.00 38.10 3.69
169 170 2.587753 AACACGTGGCACCTGTCG 60.588 61.111 21.57 7.74 0.00 4.35
170 171 3.022287 CAACACGTGGCACCTGTC 58.978 61.111 21.57 0.00 0.00 3.51
171 172 3.209097 GCAACACGTGGCACCTGT 61.209 61.111 21.57 15.19 0.00 4.00
196 197 1.521681 CTAACTAGTGGCGGCAGGC 60.522 63.158 13.91 2.73 44.11 4.85
197 198 1.144057 CCTAACTAGTGGCGGCAGG 59.856 63.158 13.91 3.97 0.00 4.85
198 199 1.144057 CCCTAACTAGTGGCGGCAG 59.856 63.158 13.91 2.93 0.00 4.85
199 200 2.363975 CCCCTAACTAGTGGCGGCA 61.364 63.158 7.97 7.97 0.00 5.69
200 201 2.504519 CCCCTAACTAGTGGCGGC 59.495 66.667 0.00 0.00 0.00 6.53
201 202 1.683418 GACCCCCTAACTAGTGGCGG 61.683 65.000 0.00 0.00 0.00 6.13
202 203 1.683418 GGACCCCCTAACTAGTGGCG 61.683 65.000 0.00 0.00 0.00 5.69
203 204 0.326332 AGGACCCCCTAACTAGTGGC 60.326 60.000 0.00 0.00 42.15 5.01
204 205 2.265526 AAGGACCCCCTAACTAGTGG 57.734 55.000 0.00 0.00 43.48 4.00
205 206 4.202535 ACAAAAAGGACCCCCTAACTAGTG 60.203 45.833 0.00 0.00 43.48 2.74
206 207 3.985452 ACAAAAAGGACCCCCTAACTAGT 59.015 43.478 0.00 0.00 43.48 2.57
207 208 4.567116 GGACAAAAAGGACCCCCTAACTAG 60.567 50.000 0.00 0.00 43.48 2.57
208 209 3.331591 GGACAAAAAGGACCCCCTAACTA 59.668 47.826 0.00 0.00 43.48 2.24
209 210 2.109480 GGACAAAAAGGACCCCCTAACT 59.891 50.000 0.00 0.00 43.48 2.24
210 211 2.158430 TGGACAAAAAGGACCCCCTAAC 60.158 50.000 0.00 0.00 43.48 2.34
211 212 2.145298 TGGACAAAAAGGACCCCCTAA 58.855 47.619 0.00 0.00 43.48 2.69
212 213 1.835895 TGGACAAAAAGGACCCCCTA 58.164 50.000 0.00 0.00 43.48 3.53
214 215 2.911552 TATGGACAAAAAGGACCCCC 57.088 50.000 0.00 0.00 0.00 5.40
215 216 5.623596 CGAAAATATGGACAAAAAGGACCCC 60.624 44.000 0.00 0.00 0.00 4.95
216 217 5.184287 TCGAAAATATGGACAAAAAGGACCC 59.816 40.000 0.00 0.00 0.00 4.46
217 218 6.090783 GTCGAAAATATGGACAAAAAGGACC 58.909 40.000 0.00 0.00 36.81 4.46
218 219 5.793457 CGTCGAAAATATGGACAAAAAGGAC 59.207 40.000 0.00 0.00 36.64 3.85
219 220 5.701750 TCGTCGAAAATATGGACAAAAAGGA 59.298 36.000 0.00 0.00 36.64 3.36
220 221 5.933790 TCGTCGAAAATATGGACAAAAAGG 58.066 37.500 0.00 0.00 36.64 3.11
221 222 6.519761 CACTCGTCGAAAATATGGACAAAAAG 59.480 38.462 0.00 0.00 36.64 2.27
222 223 6.367421 CACTCGTCGAAAATATGGACAAAAA 58.633 36.000 0.00 0.00 36.64 1.94
223 224 5.106869 CCACTCGTCGAAAATATGGACAAAA 60.107 40.000 0.00 0.00 36.64 2.44
224 225 4.390603 CCACTCGTCGAAAATATGGACAAA 59.609 41.667 0.00 0.00 36.64 2.83
225 226 3.930229 CCACTCGTCGAAAATATGGACAA 59.070 43.478 0.00 0.00 36.64 3.18
226 227 3.056393 ACCACTCGTCGAAAATATGGACA 60.056 43.478 13.16 0.00 36.64 4.02
227 228 3.518590 ACCACTCGTCGAAAATATGGAC 58.481 45.455 13.16 0.00 33.77 4.02
228 229 3.429822 GGACCACTCGTCGAAAATATGGA 60.430 47.826 13.16 0.00 42.99 3.41
229 230 2.864343 GGACCACTCGTCGAAAATATGG 59.136 50.000 0.00 2.35 42.99 2.74
230 231 3.782046 AGGACCACTCGTCGAAAATATG 58.218 45.455 0.00 0.00 42.99 1.78
231 232 4.467198 AAGGACCACTCGTCGAAAATAT 57.533 40.909 0.00 0.00 42.99 1.28
232 233 3.947910 AAGGACCACTCGTCGAAAATA 57.052 42.857 0.00 0.00 42.99 1.40
233 234 2.833631 AAGGACCACTCGTCGAAAAT 57.166 45.000 0.00 0.00 42.99 1.82
234 235 2.607631 AAAGGACCACTCGTCGAAAA 57.392 45.000 0.00 0.00 42.99 2.29
235 236 2.607631 AAAAGGACCACTCGTCGAAA 57.392 45.000 0.00 0.00 42.99 3.46
236 237 2.206750 CAAAAAGGACCACTCGTCGAA 58.793 47.619 0.00 0.00 42.99 3.71
237 238 1.539496 CCAAAAAGGACCACTCGTCGA 60.539 52.381 0.00 0.00 42.99 4.20
238 239 0.865769 CCAAAAAGGACCACTCGTCG 59.134 55.000 0.00 0.00 42.99 5.12
239 240 0.591659 GCCAAAAAGGACCACTCGTC 59.408 55.000 0.00 0.00 41.22 4.20
240 241 0.106918 TGCCAAAAAGGACCACTCGT 60.107 50.000 0.00 0.00 41.22 4.18
241 242 1.028905 TTGCCAAAAAGGACCACTCG 58.971 50.000 0.00 0.00 41.22 4.18
242 243 3.321968 AGAATTGCCAAAAAGGACCACTC 59.678 43.478 0.00 0.00 41.22 3.51
243 244 3.070015 CAGAATTGCCAAAAAGGACCACT 59.930 43.478 0.00 0.00 41.22 4.00
244 245 3.181466 ACAGAATTGCCAAAAAGGACCAC 60.181 43.478 0.00 0.00 41.22 4.16
245 246 3.037549 ACAGAATTGCCAAAAAGGACCA 58.962 40.909 0.00 0.00 41.22 4.02
246 247 3.751479 ACAGAATTGCCAAAAAGGACC 57.249 42.857 0.00 0.00 41.22 4.46
247 248 3.809279 CCAACAGAATTGCCAAAAAGGAC 59.191 43.478 0.00 0.00 41.22 3.85
248 249 3.743899 GCCAACAGAATTGCCAAAAAGGA 60.744 43.478 0.00 0.00 41.22 3.36
249 250 2.549329 GCCAACAGAATTGCCAAAAAGG 59.451 45.455 0.00 0.00 41.84 3.11
250 251 2.549329 GGCCAACAGAATTGCCAAAAAG 59.451 45.455 0.00 0.00 43.46 2.27
251 252 2.570135 GGCCAACAGAATTGCCAAAAA 58.430 42.857 0.00 0.00 43.46 1.94
252 253 2.252976 GGCCAACAGAATTGCCAAAA 57.747 45.000 0.00 0.00 43.46 2.44
264 265 4.938756 AGGACCCCCTGGCCAACA 62.939 66.667 7.01 0.00 42.42 3.33
265 266 2.673027 AAAAGGACCCCCTGGCCAAC 62.673 60.000 7.01 0.00 43.48 3.77
266 267 2.408203 AAAAGGACCCCCTGGCCAA 61.408 57.895 7.01 0.00 43.48 4.52
267 268 2.785389 AAAAGGACCCCCTGGCCA 60.785 61.111 4.71 4.71 43.48 5.36
268 269 2.283894 CAAAAGGACCCCCTGGCC 60.284 66.667 0.00 0.00 43.48 5.36
269 270 2.283894 CCAAAAGGACCCCCTGGC 60.284 66.667 0.00 0.00 43.48 4.85
270 271 1.076727 GTCCAAAAGGACCCCCTGG 59.923 63.158 3.27 0.00 43.48 4.45
271 272 0.187361 TTGTCCAAAAGGACCCCCTG 59.813 55.000 11.79 0.00 43.48 4.45
273 274 1.796017 TTTTGTCCAAAAGGACCCCC 58.204 50.000 11.79 0.00 38.04 5.40
348 349 8.398665 CACTGAGTTTTATCTAATTTAGCCCAC 58.601 37.037 0.00 0.00 0.00 4.61
374 375 4.641989 TCCTTTCAGCATTTCATAGCCTTC 59.358 41.667 0.00 0.00 0.00 3.46
410 411 4.393778 TCCCGACCCCTCCTGTCC 62.394 72.222 0.00 0.00 0.00 4.02
490 491 3.643763 GTCTACGGATACTGCAATCCAG 58.356 50.000 16.01 11.28 44.98 3.86
543 544 4.529219 TCGCCACCATAGCCGCTG 62.529 66.667 2.16 0.00 0.00 5.18
547 548 0.392461 TGTTTCTCGCCACCATAGCC 60.392 55.000 0.00 0.00 0.00 3.93
622 623 0.732880 CCACACACTCCGCTTCGTAG 60.733 60.000 0.00 0.00 0.00 3.51
663 664 0.666274 TGTTGACTGTAAGAGCGCCG 60.666 55.000 2.29 0.00 37.43 6.46
664 665 0.790814 GTGTTGACTGTAAGAGCGCC 59.209 55.000 2.29 0.00 37.43 6.53
665 666 1.457303 CAGTGTTGACTGTAAGAGCGC 59.543 52.381 0.00 0.00 44.15 5.92
674 675 1.959042 ACAAGAGGCAGTGTTGACTG 58.041 50.000 2.63 0.00 44.85 3.51
676 677 4.515191 TGAATAACAAGAGGCAGTGTTGAC 59.485 41.667 9.79 3.71 38.40 3.18
677 678 4.713553 TGAATAACAAGAGGCAGTGTTGA 58.286 39.130 9.79 0.00 38.40 3.18
678 679 4.756642 TCTGAATAACAAGAGGCAGTGTTG 59.243 41.667 9.79 0.00 38.40 3.33
679 680 4.757149 GTCTGAATAACAAGAGGCAGTGTT 59.243 41.667 5.89 5.89 40.88 3.32
680 681 4.040952 AGTCTGAATAACAAGAGGCAGTGT 59.959 41.667 0.00 0.00 0.00 3.55
681 682 4.391216 CAGTCTGAATAACAAGAGGCAGTG 59.609 45.833 0.00 0.00 0.00 3.66
682 683 4.284490 TCAGTCTGAATAACAAGAGGCAGT 59.716 41.667 0.00 0.00 0.00 4.40
683 684 4.825422 TCAGTCTGAATAACAAGAGGCAG 58.175 43.478 0.00 0.00 0.00 4.85
684 685 4.890158 TCAGTCTGAATAACAAGAGGCA 57.110 40.909 0.00 0.00 0.00 4.75
685 686 5.645497 ACAATCAGTCTGAATAACAAGAGGC 59.355 40.000 6.64 0.00 0.00 4.70
686 687 6.652481 ACACAATCAGTCTGAATAACAAGAGG 59.348 38.462 6.64 0.00 0.00 3.69
687 688 7.664082 ACACAATCAGTCTGAATAACAAGAG 57.336 36.000 6.64 0.00 0.00 2.85
688 689 9.371136 GATACACAATCAGTCTGAATAACAAGA 57.629 33.333 6.64 0.00 34.46 3.02
689 690 8.607459 GGATACACAATCAGTCTGAATAACAAG 58.393 37.037 6.64 0.00 36.20 3.16
690 691 7.552687 GGGATACACAATCAGTCTGAATAACAA 59.447 37.037 6.64 0.00 36.20 2.83
691 692 7.047891 GGGATACACAATCAGTCTGAATAACA 58.952 38.462 6.64 0.00 36.20 2.41
692 693 7.225538 CAGGGATACACAATCAGTCTGAATAAC 59.774 40.741 6.64 0.00 36.20 1.89
693 694 7.275183 CAGGGATACACAATCAGTCTGAATAA 58.725 38.462 6.64 0.00 36.20 1.40
694 695 6.183361 CCAGGGATACACAATCAGTCTGAATA 60.183 42.308 6.64 0.00 36.20 1.75
695 696 5.397221 CCAGGGATACACAATCAGTCTGAAT 60.397 44.000 6.64 0.00 36.20 2.57
696 697 4.080919 CCAGGGATACACAATCAGTCTGAA 60.081 45.833 6.64 0.00 36.20 3.02
697 698 3.452264 CCAGGGATACACAATCAGTCTGA 59.548 47.826 4.68 4.68 36.20 3.27
698 699 3.198635 ACCAGGGATACACAATCAGTCTG 59.801 47.826 0.00 0.00 36.20 3.51
699 700 3.454858 ACCAGGGATACACAATCAGTCT 58.545 45.455 0.00 0.00 36.20 3.24
700 701 3.914426 ACCAGGGATACACAATCAGTC 57.086 47.619 0.00 0.00 36.20 3.51
701 702 5.339200 CCTTTACCAGGGATACACAATCAGT 60.339 44.000 0.00 0.00 39.39 3.41
702 703 5.126067 CCTTTACCAGGGATACACAATCAG 58.874 45.833 0.00 0.00 39.39 2.90
703 704 5.110814 CCTTTACCAGGGATACACAATCA 57.889 43.478 0.00 0.00 39.39 2.57
716 717 4.642885 TGAACTGTCCAAAACCTTTACCAG 59.357 41.667 0.00 0.00 0.00 4.00
717 718 4.601084 TGAACTGTCCAAAACCTTTACCA 58.399 39.130 0.00 0.00 0.00 3.25
718 719 4.885325 TCTGAACTGTCCAAAACCTTTACC 59.115 41.667 0.00 0.00 0.00 2.85
719 720 5.820947 TCTCTGAACTGTCCAAAACCTTTAC 59.179 40.000 0.00 0.00 0.00 2.01
720 721 5.820947 GTCTCTGAACTGTCCAAAACCTTTA 59.179 40.000 0.00 0.00 0.00 1.85
721 722 4.640647 GTCTCTGAACTGTCCAAAACCTTT 59.359 41.667 0.00 0.00 0.00 3.11
722 723 4.200092 GTCTCTGAACTGTCCAAAACCTT 58.800 43.478 0.00 0.00 0.00 3.50
723 724 3.199946 TGTCTCTGAACTGTCCAAAACCT 59.800 43.478 0.00 0.00 0.00 3.50
724 725 3.541632 TGTCTCTGAACTGTCCAAAACC 58.458 45.455 0.00 0.00 0.00 3.27
725 726 4.442706 TCTGTCTCTGAACTGTCCAAAAC 58.557 43.478 0.00 0.00 0.00 2.43
726 727 4.753516 TCTGTCTCTGAACTGTCCAAAA 57.246 40.909 0.00 0.00 0.00 2.44
727 728 4.963318 ATCTGTCTCTGAACTGTCCAAA 57.037 40.909 0.00 0.00 0.00 3.28
728 729 4.464244 CCTATCTGTCTCTGAACTGTCCAA 59.536 45.833 0.00 0.00 0.00 3.53
729 730 4.019858 CCTATCTGTCTCTGAACTGTCCA 58.980 47.826 0.00 0.00 0.00 4.02
730 731 4.020543 ACCTATCTGTCTCTGAACTGTCC 58.979 47.826 0.00 0.00 0.00 4.02
731 732 4.201871 CGACCTATCTGTCTCTGAACTGTC 60.202 50.000 0.00 0.00 32.97 3.51
732 733 3.692101 CGACCTATCTGTCTCTGAACTGT 59.308 47.826 0.00 0.00 32.97 3.55
733 734 3.066064 CCGACCTATCTGTCTCTGAACTG 59.934 52.174 0.00 0.00 32.97 3.16
734 735 3.283751 CCGACCTATCTGTCTCTGAACT 58.716 50.000 0.00 0.00 32.97 3.01
735 736 2.359531 CCCGACCTATCTGTCTCTGAAC 59.640 54.545 0.00 0.00 32.97 3.18
736 737 2.241430 TCCCGACCTATCTGTCTCTGAA 59.759 50.000 0.00 0.00 32.97 3.02
737 738 1.844497 TCCCGACCTATCTGTCTCTGA 59.156 52.381 0.00 0.00 32.97 3.27
738 739 2.226330 CTCCCGACCTATCTGTCTCTG 58.774 57.143 0.00 0.00 32.97 3.35
739 740 1.847737 ACTCCCGACCTATCTGTCTCT 59.152 52.381 0.00 0.00 32.97 3.10
740 741 2.351706 ACTCCCGACCTATCTGTCTC 57.648 55.000 0.00 0.00 32.97 3.36
741 742 3.202595 ACTTACTCCCGACCTATCTGTCT 59.797 47.826 0.00 0.00 32.97 3.41
742 743 3.553904 ACTTACTCCCGACCTATCTGTC 58.446 50.000 0.00 0.00 0.00 3.51
743 744 3.053842 TGACTTACTCCCGACCTATCTGT 60.054 47.826 0.00 0.00 0.00 3.41
744 745 3.552875 TGACTTACTCCCGACCTATCTG 58.447 50.000 0.00 0.00 0.00 2.90
745 746 3.947612 TGACTTACTCCCGACCTATCT 57.052 47.619 0.00 0.00 0.00 1.98
746 747 4.216687 CAGATGACTTACTCCCGACCTATC 59.783 50.000 0.00 0.00 0.00 2.08
747 748 4.145807 CAGATGACTTACTCCCGACCTAT 58.854 47.826 0.00 0.00 0.00 2.57
748 749 3.552875 CAGATGACTTACTCCCGACCTA 58.447 50.000 0.00 0.00 0.00 3.08
749 750 2.379972 CAGATGACTTACTCCCGACCT 58.620 52.381 0.00 0.00 0.00 3.85
750 751 1.409427 CCAGATGACTTACTCCCGACC 59.591 57.143 0.00 0.00 0.00 4.79
751 752 2.100989 ACCAGATGACTTACTCCCGAC 58.899 52.381 0.00 0.00 0.00 4.79
752 753 2.526888 ACCAGATGACTTACTCCCGA 57.473 50.000 0.00 0.00 0.00 5.14
753 754 4.730949 TTTACCAGATGACTTACTCCCG 57.269 45.455 0.00 0.00 0.00 5.14
754 755 6.098409 TCTCATTTACCAGATGACTTACTCCC 59.902 42.308 0.00 0.00 30.77 4.30
755 756 6.981559 GTCTCATTTACCAGATGACTTACTCC 59.018 42.308 0.00 0.00 30.77 3.85
756 757 7.777095 AGTCTCATTTACCAGATGACTTACTC 58.223 38.462 0.00 0.00 30.33 2.59
757 758 7.726033 AGTCTCATTTACCAGATGACTTACT 57.274 36.000 0.00 0.00 30.33 2.24
758 759 9.522804 CTTAGTCTCATTTACCAGATGACTTAC 57.477 37.037 0.00 0.00 35.36 2.34
759 760 8.696374 CCTTAGTCTCATTTACCAGATGACTTA 58.304 37.037 0.00 0.00 35.36 2.24
760 761 7.400339 TCCTTAGTCTCATTTACCAGATGACTT 59.600 37.037 0.00 0.00 35.36 3.01
761 762 6.897966 TCCTTAGTCTCATTTACCAGATGACT 59.102 38.462 0.00 0.00 37.17 3.41
762 763 7.113658 TCCTTAGTCTCATTTACCAGATGAC 57.886 40.000 0.00 0.00 30.77 3.06
763 764 6.183360 GCTCCTTAGTCTCATTTACCAGATGA 60.183 42.308 0.00 0.00 32.87 2.92
764 765 5.988561 GCTCCTTAGTCTCATTTACCAGATG 59.011 44.000 0.00 0.00 0.00 2.90
765 766 5.071115 GGCTCCTTAGTCTCATTTACCAGAT 59.929 44.000 0.00 0.00 0.00 2.90
766 767 4.406003 GGCTCCTTAGTCTCATTTACCAGA 59.594 45.833 0.00 0.00 0.00 3.86
767 768 4.407296 AGGCTCCTTAGTCTCATTTACCAG 59.593 45.833 0.00 0.00 29.18 4.00
768 769 4.362677 AGGCTCCTTAGTCTCATTTACCA 58.637 43.478 0.00 0.00 29.18 3.25
769 770 5.119694 CAAGGCTCCTTAGTCTCATTTACC 58.880 45.833 0.11 0.00 36.37 2.85
770 771 4.572795 GCAAGGCTCCTTAGTCTCATTTAC 59.427 45.833 0.11 0.00 36.37 2.01
771 772 4.471386 AGCAAGGCTCCTTAGTCTCATTTA 59.529 41.667 0.11 0.00 36.37 1.40
772 773 3.265479 AGCAAGGCTCCTTAGTCTCATTT 59.735 43.478 0.11 0.00 36.37 2.32
773 774 2.843113 AGCAAGGCTCCTTAGTCTCATT 59.157 45.455 0.11 0.00 36.37 2.57
774 775 2.476199 AGCAAGGCTCCTTAGTCTCAT 58.524 47.619 0.11 0.00 36.37 2.90
775 776 1.944177 AGCAAGGCTCCTTAGTCTCA 58.056 50.000 0.11 0.00 36.37 3.27
776 777 4.343814 AGATTAGCAAGGCTCCTTAGTCTC 59.656 45.833 0.11 0.00 36.37 3.36
777 778 4.100808 CAGATTAGCAAGGCTCCTTAGTCT 59.899 45.833 0.11 2.43 40.22 3.24
778 779 4.141824 ACAGATTAGCAAGGCTCCTTAGTC 60.142 45.833 0.11 0.00 40.44 2.59
779 780 3.777522 ACAGATTAGCAAGGCTCCTTAGT 59.222 43.478 0.11 0.00 40.44 2.24
780 781 4.141846 TGACAGATTAGCAAGGCTCCTTAG 60.142 45.833 0.11 0.00 40.44 2.18
781 782 3.774766 TGACAGATTAGCAAGGCTCCTTA 59.225 43.478 0.11 0.00 40.44 2.69
782 783 2.573462 TGACAGATTAGCAAGGCTCCTT 59.427 45.455 0.00 0.00 40.44 3.36
783 784 2.191400 TGACAGATTAGCAAGGCTCCT 58.809 47.619 0.00 0.00 40.44 3.69
784 785 2.698855 TGACAGATTAGCAAGGCTCC 57.301 50.000 0.00 0.00 40.44 4.70
785 786 3.866651 TCTTGACAGATTAGCAAGGCTC 58.133 45.455 0.00 0.00 40.44 4.70
786 787 3.262915 ACTCTTGACAGATTAGCAAGGCT 59.737 43.478 0.00 0.00 43.41 4.58
787 788 3.373439 CACTCTTGACAGATTAGCAAGGC 59.627 47.826 0.00 0.00 39.47 4.35
788 789 3.937706 CCACTCTTGACAGATTAGCAAGG 59.062 47.826 0.00 0.00 39.47 3.61
789 790 4.825422 TCCACTCTTGACAGATTAGCAAG 58.175 43.478 0.00 0.00 40.16 4.01
790 791 4.890158 TCCACTCTTGACAGATTAGCAA 57.110 40.909 0.00 0.00 0.00 3.91
791 792 4.763073 CATCCACTCTTGACAGATTAGCA 58.237 43.478 0.00 0.00 0.00 3.49
792 793 3.559242 GCATCCACTCTTGACAGATTAGC 59.441 47.826 0.00 0.00 0.00 3.09
793 794 5.021033 AGCATCCACTCTTGACAGATTAG 57.979 43.478 0.00 0.00 0.00 1.73
794 795 4.713814 AGAGCATCCACTCTTGACAGATTA 59.286 41.667 0.00 0.00 44.76 1.75
795 796 3.518705 AGAGCATCCACTCTTGACAGATT 59.481 43.478 0.00 0.00 44.76 2.40
796 797 3.106054 AGAGCATCCACTCTTGACAGAT 58.894 45.455 0.00 0.00 44.76 2.90
797 798 2.533916 AGAGCATCCACTCTTGACAGA 58.466 47.619 0.00 0.00 44.76 3.41
805 806 1.484240 AGCACCTAAGAGCATCCACTC 59.516 52.381 0.00 0.00 33.66 3.51
806 807 1.577736 AGCACCTAAGAGCATCCACT 58.422 50.000 0.00 0.00 33.66 4.00
807 808 3.323403 AGATAGCACCTAAGAGCATCCAC 59.677 47.826 0.00 0.00 33.66 4.02
808 809 3.323115 CAGATAGCACCTAAGAGCATCCA 59.677 47.826 0.00 0.00 33.66 3.41
809 810 3.306641 CCAGATAGCACCTAAGAGCATCC 60.307 52.174 0.00 0.00 33.66 3.51
810 811 3.864160 GCCAGATAGCACCTAAGAGCATC 60.864 52.174 0.00 0.00 31.08 3.91
811 812 2.038295 GCCAGATAGCACCTAAGAGCAT 59.962 50.000 0.00 0.00 31.08 3.79
812 813 1.414181 GCCAGATAGCACCTAAGAGCA 59.586 52.381 0.00 0.00 31.08 4.26
813 814 1.414181 TGCCAGATAGCACCTAAGAGC 59.586 52.381 0.00 0.00 38.00 4.09
814 815 2.036992 CCTGCCAGATAGCACCTAAGAG 59.963 54.545 0.00 0.00 38.00 2.85
815 816 2.042464 CCTGCCAGATAGCACCTAAGA 58.958 52.381 0.00 0.00 38.00 2.10
816 817 1.765314 ACCTGCCAGATAGCACCTAAG 59.235 52.381 0.00 0.00 38.00 2.18
817 818 1.486310 CACCTGCCAGATAGCACCTAA 59.514 52.381 0.00 0.00 38.00 2.69
818 819 1.123077 CACCTGCCAGATAGCACCTA 58.877 55.000 0.00 0.00 38.00 3.08
819 820 0.618680 TCACCTGCCAGATAGCACCT 60.619 55.000 0.00 0.00 38.00 4.00
820 821 0.462759 GTCACCTGCCAGATAGCACC 60.463 60.000 0.00 0.00 38.00 5.01
821 822 0.539051 AGTCACCTGCCAGATAGCAC 59.461 55.000 0.00 0.00 38.00 4.40
822 823 0.538584 CAGTCACCTGCCAGATAGCA 59.461 55.000 0.00 0.00 41.46 3.49
823 824 0.539051 ACAGTCACCTGCCAGATAGC 59.461 55.000 0.00 0.00 42.81 2.97
824 825 2.760650 TGTACAGTCACCTGCCAGATAG 59.239 50.000 0.00 0.00 42.81 2.08
825 826 2.815158 TGTACAGTCACCTGCCAGATA 58.185 47.619 0.00 0.00 42.81 1.98
826 827 1.644509 TGTACAGTCACCTGCCAGAT 58.355 50.000 0.00 0.00 42.81 2.90
827 828 1.070134 GTTGTACAGTCACCTGCCAGA 59.930 52.381 0.00 0.00 42.81 3.86
828 829 1.070758 AGTTGTACAGTCACCTGCCAG 59.929 52.381 0.00 0.00 42.81 4.85
829 830 1.128200 AGTTGTACAGTCACCTGCCA 58.872 50.000 0.00 0.00 42.81 4.92
830 831 3.611766 ATAGTTGTACAGTCACCTGCC 57.388 47.619 0.00 0.00 42.81 4.85
831 832 5.941948 AAAATAGTTGTACAGTCACCTGC 57.058 39.130 0.00 0.00 42.81 4.85
855 856 9.314321 CGACTGGAAAGAGAGCTTTATTAATTA 57.686 33.333 0.00 0.00 44.10 1.40
856 857 7.201652 GCGACTGGAAAGAGAGCTTTATTAATT 60.202 37.037 0.00 0.00 44.10 1.40
857 858 6.258947 GCGACTGGAAAGAGAGCTTTATTAAT 59.741 38.462 0.00 0.00 44.10 1.40
858 859 5.581085 GCGACTGGAAAGAGAGCTTTATTAA 59.419 40.000 0.00 0.00 44.10 1.40
859 860 5.109903 GCGACTGGAAAGAGAGCTTTATTA 58.890 41.667 0.00 0.00 44.10 0.98
860 861 3.935828 GCGACTGGAAAGAGAGCTTTATT 59.064 43.478 0.00 0.00 44.10 1.40
861 862 3.055819 TGCGACTGGAAAGAGAGCTTTAT 60.056 43.478 0.00 0.00 44.10 1.40
862 863 2.299013 TGCGACTGGAAAGAGAGCTTTA 59.701 45.455 0.00 0.00 44.10 1.85
863 864 1.070758 TGCGACTGGAAAGAGAGCTTT 59.929 47.619 0.00 0.00 46.62 3.51
864 865 0.681733 TGCGACTGGAAAGAGAGCTT 59.318 50.000 0.00 0.00 35.37 3.74
865 866 0.681733 TTGCGACTGGAAAGAGAGCT 59.318 50.000 0.00 0.00 0.00 4.09
866 867 1.512926 TTTGCGACTGGAAAGAGAGC 58.487 50.000 0.00 0.00 31.28 4.09
886 887 9.309224 GTATATATTAAGGGAGCCCATGTTTTT 57.691 33.333 8.53 0.00 38.92 1.94
887 888 8.452868 TGTATATATTAAGGGAGCCCATGTTTT 58.547 33.333 8.53 0.00 38.92 2.43
888 889 7.888546 GTGTATATATTAAGGGAGCCCATGTTT 59.111 37.037 8.53 0.00 38.92 2.83
1067 1071 4.742649 TCTGAGGCTCCGGCGACT 62.743 66.667 9.30 0.00 39.81 4.18
1625 1673 2.048503 CGTCGTGGAACCACCTCC 60.049 66.667 16.85 5.52 43.49 4.30
1933 2002 1.697082 TTGCCCACGTAACCCTGTGA 61.697 55.000 0.00 0.00 38.36 3.58
2381 2522 2.438254 GCCGCCATCATGACCACA 60.438 61.111 0.00 0.00 0.00 4.17
2382 2523 3.576356 CGCCGCCATCATGACCAC 61.576 66.667 0.00 0.00 0.00 4.16
2567 4049 1.936547 CTAAGACGCTGGGCTGATTTC 59.063 52.381 0.00 0.00 0.00 2.17
2685 4174 4.258543 TCGTCCTTTTGATTGGTACATCC 58.741 43.478 0.00 0.00 39.30 3.51
2687 4176 5.048991 GTGTTCGTCCTTTTGATTGGTACAT 60.049 40.000 0.00 0.00 39.30 2.29
2689 4178 4.514066 AGTGTTCGTCCTTTTGATTGGTAC 59.486 41.667 0.00 0.00 0.00 3.34
2705 4194 7.967854 TCAAATGATAAGCCATTTTAGTGTTCG 59.032 33.333 0.00 0.00 42.26 3.95
2891 4391 1.761174 GTGGGCCTTGACCTGAAGA 59.239 57.895 4.53 0.00 0.00 2.87
2914 4414 3.809013 ATCCCCGGTCATGGCCAC 61.809 66.667 18.31 0.00 0.00 5.01
2928 4429 4.176752 GGGTGTCGGGCCTCATCC 62.177 72.222 0.84 11.14 0.00 3.51
3099 5950 2.354510 CCTAATTTTCATCGCGCTCCAA 59.645 45.455 5.56 0.00 0.00 3.53
3225 6081 5.121768 CGTTAGGTTAGCTTGCTATTGTTGT 59.878 40.000 2.99 0.00 0.00 3.32
3236 6092 2.423577 CTTGGTGCGTTAGGTTAGCTT 58.576 47.619 0.00 0.00 0.00 3.74


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.