Multiple sequence alignment - TraesCS2D01G556200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G556200 chr2D 100.000 3487 0 0 1 3487 629992158 629988672 0.000000e+00 6440.0
1 TraesCS2D01G556200 chr2D 88.564 1609 102 38 1594 3173 630090908 630089353 0.000000e+00 1877.0
2 TraesCS2D01G556200 chr2D 87.933 1558 119 40 1651 3173 629726442 629727965 0.000000e+00 1772.0
3 TraesCS2D01G556200 chr2D 88.608 1466 112 26 1631 3073 630632949 630634382 0.000000e+00 1731.0
4 TraesCS2D01G556200 chr2D 87.372 681 69 15 14 686 630629737 630630408 0.000000e+00 765.0
5 TraesCS2D01G556200 chr2D 83.406 687 72 17 14 686 630092616 630091958 1.790000e-167 599.0
6 TraesCS2D01G556200 chr2D 85.029 521 39 21 889 1379 630631866 630632377 8.690000e-136 494.0
7 TraesCS2D01G556200 chr2D 86.414 449 44 9 979 1419 630091606 630091167 3.150000e-130 475.0
8 TraesCS2D01G556200 chr2D 82.031 512 37 25 3004 3487 630049712 630049228 5.460000e-103 385.0
9 TraesCS2D01G556200 chr2D 81.091 275 44 7 1012 1282 30662283 30662013 2.730000e-51 213.0
10 TraesCS2D01G556200 chr2D 93.750 48 3 0 3440 3487 629728695 629728742 4.830000e-09 73.1
11 TraesCS2D01G556200 chr2B 85.879 1558 116 43 1651 3171 773732551 773734041 0.000000e+00 1563.0
12 TraesCS2D01G556200 chr2B 80.364 1044 107 61 398 1363 773731304 773732327 0.000000e+00 702.0
13 TraesCS2D01G556200 chr2B 89.013 446 39 8 2733 3173 147797800 147798240 8.510000e-151 544.0
14 TraesCS2D01G556200 chr2B 84.901 404 47 10 14 411 773730967 773731362 2.520000e-106 396.0
15 TraesCS2D01G556200 chr2B 83.240 358 23 12 883 1210 773078848 773078498 9.470000e-76 294.0
16 TraesCS2D01G556200 chr2A 92.809 1029 62 9 1921 2944 760772006 760773027 0.000000e+00 1480.0
17 TraesCS2D01G556200 chr2A 91.501 953 57 13 1921 2861 760508799 760507859 0.000000e+00 1290.0
18 TraesCS2D01G556200 chr2A 91.361 845 52 8 1911 2742 760490419 760489583 0.000000e+00 1136.0
19 TraesCS2D01G556200 chr2A 84.600 513 41 25 906 1393 760770808 760771307 3.150000e-130 475.0
20 TraesCS2D01G556200 chr2A 83.636 495 36 18 906 1396 760509570 760509117 1.160000e-114 424.0
21 TraesCS2D01G556200 chr2A 82.789 459 43 23 3060 3487 760477047 760476594 9.140000e-101 377.0
22 TraesCS2D01G556200 chr2A 86.458 192 17 5 2988 3173 760773027 760773215 5.900000e-48 202.0
23 TraesCS2D01G556200 chr2A 83.529 170 10 14 2849 3017 760507468 760507316 3.630000e-30 143.0
24 TraesCS2D01G556200 chr2A 88.393 112 9 4 2753 2863 33021189 33021297 7.850000e-27 132.0
25 TraesCS2D01G556200 chr2A 84.444 135 17 2 1642 1772 760771874 760772008 2.820000e-26 130.0
26 TraesCS2D01G556200 chr2A 75.849 265 38 18 2617 2864 78804047 78803792 1.020000e-20 111.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G556200 chr2D 629988672 629992158 3486 True 6440.000000 6440 100.000000 1 3487 1 chr2D.!!$R2 3486
1 TraesCS2D01G556200 chr2D 630629737 630634382 4645 False 996.666667 1731 87.003000 14 3073 3 chr2D.!!$F2 3059
2 TraesCS2D01G556200 chr2D 630089353 630092616 3263 True 983.666667 1877 86.128000 14 3173 3 chr2D.!!$R4 3159
3 TraesCS2D01G556200 chr2D 629726442 629728742 2300 False 922.550000 1772 90.841500 1651 3487 2 chr2D.!!$F1 1836
4 TraesCS2D01G556200 chr2B 773730967 773734041 3074 False 887.000000 1563 83.714667 14 3171 3 chr2B.!!$F2 3157
5 TraesCS2D01G556200 chr2A 760489583 760490419 836 True 1136.000000 1136 91.361000 1911 2742 1 chr2A.!!$R3 831
6 TraesCS2D01G556200 chr2A 760507316 760509570 2254 True 619.000000 1290 86.222000 906 3017 3 chr2A.!!$R4 2111
7 TraesCS2D01G556200 chr2A 760770808 760773215 2407 False 571.750000 1480 87.077750 906 3173 4 chr2A.!!$F2 2267

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
608 621 0.107897 ATGCGCAATCGGTAAGGACA 60.108 50.0 17.11 0.0 35.95 4.02 F
793 1927 0.108281 TCGAGAGACGATCACGGACT 60.108 55.0 10.80 0.0 46.45 3.85 F
2040 4062 0.323178 CAATGCCTCTGGAGCCTTGT 60.323 55.0 0.00 0.0 33.00 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2167 4198 0.321210 CAACGCATGACAGGTGGGTA 60.321 55.000 5.56 0.0 41.2 3.69 R
2173 4204 2.118683 CAAAACACAACGCATGACAGG 58.881 47.619 0.00 0.0 0.0 4.00 R
3271 5812 0.253327 ATTTGAACCCGAGGAGAGGC 59.747 55.000 0.00 0.0 0.0 4.70 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 3.812053 GAGCACAGAGAACAACACTTCAT 59.188 43.478 0.00 0.00 0.00 2.57
33 34 5.242434 AGAACAACACTTCATTATGCGGTA 58.758 37.500 0.00 0.00 0.00 4.02
41 42 6.806249 ACACTTCATTATGCGGTAAACATTTG 59.194 34.615 0.00 0.00 0.00 2.32
119 124 7.895870 AGACATTTTTAATACACGACGATCAG 58.104 34.615 0.00 0.00 0.00 2.90
141 146 8.352752 TCAGACGTTAATACATGATTCACATC 57.647 34.615 0.00 0.00 37.07 3.06
333 339 3.921119 TTTCAAGTATGCAACAGGCTG 57.079 42.857 14.16 14.16 45.15 4.85
341 347 6.345096 AGTATGCAACAGGCTGTTATTTTT 57.655 33.333 30.72 16.51 38.77 1.94
389 395 7.698836 AATGCGCAATAAATAATTTGGAGAC 57.301 32.000 17.11 0.00 0.00 3.36
412 418 8.140628 AGACATACACAATGCACATTTTAAACA 58.859 29.630 0.00 0.00 39.39 2.83
415 421 5.344066 ACACAATGCACATTTTAAACACGA 58.656 33.333 0.00 0.00 0.00 4.35
505 512 7.166168 GCACAATATTTAAGAAAATGTGCACG 58.834 34.615 22.37 0.00 46.78 5.34
514 522 4.794169 AGAAAATGTGCACGGTAAACATC 58.206 39.130 13.13 2.59 33.48 3.06
524 532 5.527951 TGCACGGTAAACATCTTTTGAACTA 59.472 36.000 0.00 0.00 0.00 2.24
525 533 5.849604 GCACGGTAAACATCTTTTGAACTAC 59.150 40.000 0.00 0.00 0.00 2.73
541 549 9.515020 TTTTGAACTACACAATGAACATTTCTC 57.485 29.630 0.00 0.00 0.00 2.87
607 620 0.582005 GATGCGCAATCGGTAAGGAC 59.418 55.000 17.11 0.00 35.95 3.85
608 621 0.107897 ATGCGCAATCGGTAAGGACA 60.108 50.000 17.11 0.00 35.95 4.02
609 622 1.017177 TGCGCAATCGGTAAGGACAC 61.017 55.000 8.16 0.00 35.95 3.67
610 623 1.017177 GCGCAATCGGTAAGGACACA 61.017 55.000 0.30 0.00 35.95 3.72
612 625 1.803334 GCAATCGGTAAGGACACACA 58.197 50.000 0.00 0.00 0.00 3.72
613 626 2.356135 GCAATCGGTAAGGACACACAT 58.644 47.619 0.00 0.00 0.00 3.21
631 648 2.901051 ATTGACGATCGGACCGGCAC 62.901 60.000 20.98 5.00 45.63 5.01
671 688 1.269444 CGTAGATAGCGGCTTCGTGC 61.269 60.000 8.26 0.00 41.94 5.34
688 705 2.737180 CTGCGATCAGGCCGGTAT 59.263 61.111 1.90 0.00 36.68 2.73
714 1848 0.878523 CGCGGCCGGATAGATCAAAA 60.879 55.000 29.38 0.00 0.00 2.44
715 1849 0.868406 GCGGCCGGATAGATCAAAAG 59.132 55.000 29.38 0.00 0.00 2.27
716 1850 1.810412 GCGGCCGGATAGATCAAAAGT 60.810 52.381 29.38 0.00 0.00 2.66
717 1851 1.867233 CGGCCGGATAGATCAAAAGTG 59.133 52.381 20.10 0.00 0.00 3.16
718 1852 2.741878 CGGCCGGATAGATCAAAAGTGT 60.742 50.000 20.10 0.00 0.00 3.55
719 1853 2.614057 GGCCGGATAGATCAAAAGTGTG 59.386 50.000 5.05 0.00 0.00 3.82
720 1854 3.531538 GCCGGATAGATCAAAAGTGTGA 58.468 45.455 5.05 0.00 0.00 3.58
721 1855 3.938963 GCCGGATAGATCAAAAGTGTGAA 59.061 43.478 5.05 0.00 0.00 3.18
722 1856 4.394920 GCCGGATAGATCAAAAGTGTGAAA 59.605 41.667 5.05 0.00 0.00 2.69
723 1857 5.447818 GCCGGATAGATCAAAAGTGTGAAAG 60.448 44.000 5.05 0.00 0.00 2.62
724 1858 5.447818 CCGGATAGATCAAAAGTGTGAAAGC 60.448 44.000 0.00 0.00 0.00 3.51
725 1859 5.122239 CGGATAGATCAAAAGTGTGAAAGCA 59.878 40.000 0.00 0.00 0.00 3.91
726 1860 6.183360 CGGATAGATCAAAAGTGTGAAAGCAT 60.183 38.462 0.00 0.00 0.00 3.79
727 1861 7.011389 CGGATAGATCAAAAGTGTGAAAGCATA 59.989 37.037 0.00 0.00 0.00 3.14
728 1862 8.844244 GGATAGATCAAAAGTGTGAAAGCATAT 58.156 33.333 0.00 0.00 0.00 1.78
729 1863 9.875675 GATAGATCAAAAGTGTGAAAGCATATC 57.124 33.333 0.00 0.00 0.00 1.63
730 1864 6.779117 AGATCAAAAGTGTGAAAGCATATCG 58.221 36.000 0.00 0.00 0.00 2.92
731 1865 5.295431 TCAAAAGTGTGAAAGCATATCGG 57.705 39.130 0.00 0.00 0.00 4.18
732 1866 5.000591 TCAAAAGTGTGAAAGCATATCGGA 58.999 37.500 0.00 0.00 0.00 4.55
733 1867 4.946784 AAAGTGTGAAAGCATATCGGAC 57.053 40.909 0.00 0.00 0.00 4.79
734 1868 3.610040 AGTGTGAAAGCATATCGGACA 57.390 42.857 0.00 0.00 0.00 4.02
735 1869 3.262420 AGTGTGAAAGCATATCGGACAC 58.738 45.455 0.00 0.00 33.89 3.67
736 1870 3.055819 AGTGTGAAAGCATATCGGACACT 60.056 43.478 0.00 0.00 38.14 3.55
737 1871 3.307242 GTGTGAAAGCATATCGGACACTC 59.693 47.826 0.00 0.00 31.58 3.51
738 1872 3.195610 TGTGAAAGCATATCGGACACTCT 59.804 43.478 0.00 0.00 0.00 3.24
739 1873 3.553511 GTGAAAGCATATCGGACACTCTG 59.446 47.826 0.00 0.00 0.00 3.35
740 1874 3.195610 TGAAAGCATATCGGACACTCTGT 59.804 43.478 0.00 0.00 0.00 3.41
741 1875 4.401202 TGAAAGCATATCGGACACTCTGTA 59.599 41.667 0.00 0.00 0.00 2.74
742 1876 4.576216 AAGCATATCGGACACTCTGTAG 57.424 45.455 0.00 0.00 0.00 2.74
743 1877 3.821748 AGCATATCGGACACTCTGTAGA 58.178 45.455 0.00 0.00 0.00 2.59
744 1878 3.566322 AGCATATCGGACACTCTGTAGAC 59.434 47.826 0.00 0.00 0.00 2.59
745 1879 3.315470 GCATATCGGACACTCTGTAGACA 59.685 47.826 0.00 0.00 0.00 3.41
746 1880 4.202020 GCATATCGGACACTCTGTAGACAA 60.202 45.833 0.00 0.00 0.00 3.18
747 1881 5.508153 GCATATCGGACACTCTGTAGACAAT 60.508 44.000 0.00 0.00 0.00 2.71
748 1882 6.294010 GCATATCGGACACTCTGTAGACAATA 60.294 42.308 0.00 0.00 0.00 1.90
749 1883 7.649057 CATATCGGACACTCTGTAGACAATAA 58.351 38.462 0.00 0.00 0.00 1.40
750 1884 5.970317 TCGGACACTCTGTAGACAATAAA 57.030 39.130 0.00 0.00 0.00 1.40
751 1885 6.525578 TCGGACACTCTGTAGACAATAAAT 57.474 37.500 0.00 0.00 0.00 1.40
752 1886 6.561614 TCGGACACTCTGTAGACAATAAATC 58.438 40.000 0.00 0.00 0.00 2.17
753 1887 5.455849 CGGACACTCTGTAGACAATAAATCG 59.544 44.000 0.00 0.00 0.00 3.34
754 1888 6.561614 GGACACTCTGTAGACAATAAATCGA 58.438 40.000 0.00 0.00 0.00 3.59
755 1889 7.033791 GGACACTCTGTAGACAATAAATCGAA 58.966 38.462 0.00 0.00 0.00 3.71
756 1890 7.221067 GGACACTCTGTAGACAATAAATCGAAG 59.779 40.741 0.00 0.00 0.00 3.79
757 1891 7.603651 ACACTCTGTAGACAATAAATCGAAGT 58.396 34.615 0.00 0.00 0.00 3.01
758 1892 7.542477 ACACTCTGTAGACAATAAATCGAAGTG 59.458 37.037 0.00 0.00 0.00 3.16
759 1893 7.542477 CACTCTGTAGACAATAAATCGAAGTGT 59.458 37.037 0.00 0.00 0.00 3.55
760 1894 7.755822 ACTCTGTAGACAATAAATCGAAGTGTC 59.244 37.037 7.85 7.85 39.09 3.67
776 1910 3.822996 AGTGTCGAGTGTGAAAGTATCG 58.177 45.455 0.00 0.00 34.80 2.92
778 1912 3.846896 GTGTCGAGTGTGAAAGTATCGAG 59.153 47.826 0.00 0.00 42.45 4.04
791 1925 4.926207 TCGAGAGACGATCACGGA 57.074 55.556 10.80 0.00 46.45 4.69
792 1926 2.381109 TCGAGAGACGATCACGGAC 58.619 57.895 10.80 0.00 46.45 4.79
793 1927 0.108281 TCGAGAGACGATCACGGACT 60.108 55.000 10.80 0.00 46.45 3.85
795 1929 1.523515 CGAGAGACGATCACGGACTAG 59.476 57.143 0.00 0.00 45.77 2.57
835 2026 2.049435 CCTCTTTGGTTTGTGGGGC 58.951 57.895 0.00 0.00 0.00 5.80
866 2057 2.113986 GTGGAGCCCAGTGCAGTT 59.886 61.111 0.00 0.00 44.83 3.16
881 2072 2.222007 CAGTTCTAGGCTGCTAGCTG 57.778 55.000 17.23 16.92 41.99 4.24
882 2073 1.753649 CAGTTCTAGGCTGCTAGCTGA 59.246 52.381 24.19 3.72 41.99 4.26
883 2074 2.167281 CAGTTCTAGGCTGCTAGCTGAA 59.833 50.000 24.19 11.45 41.99 3.02
885 2076 0.741326 TCTAGGCTGCTAGCTGAACG 59.259 55.000 24.19 9.41 41.99 3.95
967 2352 2.485657 GCAAGGTATCCTTCCTAGCACC 60.486 54.545 0.00 0.00 42.67 5.01
968 2353 3.041946 CAAGGTATCCTTCCTAGCACCT 58.958 50.000 0.00 0.00 42.67 4.00
969 2354 3.423058 AGGTATCCTTCCTAGCACCTT 57.577 47.619 0.00 0.00 32.49 3.50
970 2355 3.737263 AGGTATCCTTCCTAGCACCTTT 58.263 45.455 0.00 0.00 32.49 3.11
972 2357 4.080299 AGGTATCCTTCCTAGCACCTTTTG 60.080 45.833 0.00 0.00 32.49 2.44
973 2358 7.106143 AGGTATCCTTCCTAGCACCTTTTGG 62.106 48.000 0.00 0.00 38.44 3.28
1282 2712 2.885644 CATTCCGGTGCGTCCTCG 60.886 66.667 0.00 0.00 40.37 4.63
1285 2715 2.830704 ATTCCGGTGCGTCCTCGAAC 62.831 60.000 0.00 0.00 44.22 3.95
1313 2751 0.406750 GATGGATGGATGGATGGGCA 59.593 55.000 0.00 0.00 0.00 5.36
1385 2829 2.701587 TGTTTCAGAACACTGCCCG 58.298 52.632 0.00 0.00 40.71 6.13
1400 2857 2.024305 CCGCCGTCGTACAGCTAG 59.976 66.667 0.00 0.00 0.00 3.42
1403 2860 0.374758 CGCCGTCGTACAGCTAGTTA 59.625 55.000 0.00 0.00 0.00 2.24
1471 3025 9.674824 CTCCAAAGTGAAATGCTCATATTTATC 57.325 33.333 0.00 0.00 36.14 1.75
1485 3039 8.404000 GCTCATATTTATCTGGGCATTTAGATG 58.596 37.037 0.00 0.00 38.76 2.90
1489 3043 7.693969 ATTTATCTGGGCATTTAGATGTAGC 57.306 36.000 0.00 0.00 35.42 3.58
1492 3046 6.633325 ATCTGGGCATTTAGATGTAGCTAT 57.367 37.500 0.00 0.00 35.63 2.97
1493 3047 7.739995 ATCTGGGCATTTAGATGTAGCTATA 57.260 36.000 0.00 0.00 35.63 1.31
1494 3048 6.936279 TCTGGGCATTTAGATGTAGCTATAC 58.064 40.000 0.00 0.00 35.63 1.47
1496 3050 7.235606 TCTGGGCATTTAGATGTAGCTATACTT 59.764 37.037 0.00 0.00 35.63 2.24
1497 3051 7.161404 TGGGCATTTAGATGTAGCTATACTTG 58.839 38.462 0.00 0.00 35.63 3.16
1498 3052 7.162082 GGGCATTTAGATGTAGCTATACTTGT 58.838 38.462 0.00 0.00 35.63 3.16
1500 3054 9.877178 GGCATTTAGATGTAGCTATACTTGTAT 57.123 33.333 0.00 0.00 35.63 2.29
1529 3083 2.884827 GCAAATCTGCCTTTGGATGAC 58.115 47.619 5.87 0.00 43.26 3.06
1530 3084 2.494870 GCAAATCTGCCTTTGGATGACT 59.505 45.455 5.87 0.00 43.26 3.41
1531 3085 3.675228 GCAAATCTGCCTTTGGATGACTG 60.675 47.826 5.87 0.00 43.26 3.51
1532 3086 1.760192 ATCTGCCTTTGGATGACTGC 58.240 50.000 0.00 0.00 0.00 4.40
1533 3087 0.401356 TCTGCCTTTGGATGACTGCA 59.599 50.000 0.00 0.00 0.00 4.41
1534 3088 1.005097 TCTGCCTTTGGATGACTGCAT 59.995 47.619 0.00 0.00 37.47 3.96
1535 3089 2.239402 TCTGCCTTTGGATGACTGCATA 59.761 45.455 0.00 0.00 34.11 3.14
1537 3091 2.025981 TGCCTTTGGATGACTGCATAGT 60.026 45.455 0.00 0.00 40.66 2.12
1554 3108 4.701765 CATAGTCTGCATTAGCCAGTTCT 58.298 43.478 0.00 0.00 41.13 3.01
1555 3109 3.710209 AGTCTGCATTAGCCAGTTCTT 57.290 42.857 0.00 0.00 41.13 2.52
1558 3112 3.373439 GTCTGCATTAGCCAGTTCTTCAG 59.627 47.826 0.00 0.00 41.13 3.02
1559 3113 3.008375 TCTGCATTAGCCAGTTCTTCAGT 59.992 43.478 0.00 0.00 41.13 3.41
1561 3115 3.077359 GCATTAGCCAGTTCTTCAGTGT 58.923 45.455 0.00 0.00 33.58 3.55
1562 3116 3.126000 GCATTAGCCAGTTCTTCAGTGTC 59.874 47.826 0.00 0.00 33.58 3.67
1563 3117 4.573900 CATTAGCCAGTTCTTCAGTGTCT 58.426 43.478 0.00 0.00 0.00 3.41
1564 3118 2.540265 AGCCAGTTCTTCAGTGTCTG 57.460 50.000 0.00 0.00 0.00 3.51
1565 3119 0.871057 GCCAGTTCTTCAGTGTCTGC 59.129 55.000 0.00 0.00 0.00 4.26
1566 3120 1.517242 CCAGTTCTTCAGTGTCTGCC 58.483 55.000 0.00 0.00 0.00 4.85
1567 3121 1.071385 CCAGTTCTTCAGTGTCTGCCT 59.929 52.381 0.00 0.00 0.00 4.75
1568 3122 2.486191 CCAGTTCTTCAGTGTCTGCCTT 60.486 50.000 0.00 0.00 0.00 4.35
1569 3123 3.209410 CAGTTCTTCAGTGTCTGCCTTT 58.791 45.455 0.00 0.00 0.00 3.11
1570 3124 3.003068 CAGTTCTTCAGTGTCTGCCTTTG 59.997 47.826 0.00 0.00 0.00 2.77
1571 3125 2.260844 TCTTCAGTGTCTGCCTTTGG 57.739 50.000 0.00 0.00 0.00 3.28
1572 3126 1.768275 TCTTCAGTGTCTGCCTTTGGA 59.232 47.619 0.00 0.00 0.00 3.53
1575 3129 4.225942 TCTTCAGTGTCTGCCTTTGGATAT 59.774 41.667 0.00 0.00 0.00 1.63
1583 3137 5.072736 TGTCTGCCTTTGGATATCATGATCT 59.927 40.000 12.53 1.54 0.00 2.75
1600 3169 3.009363 TGATCTTGCTCCCTGTGATTCAA 59.991 43.478 0.00 0.00 0.00 2.69
1604 3173 4.041567 TCTTGCTCCCTGTGATTCAACTAA 59.958 41.667 0.00 0.00 0.00 2.24
1624 3198 6.058183 ACTAAAAATGTTGTCTCAGCTGTCT 58.942 36.000 14.67 0.00 0.00 3.41
1625 3199 5.841957 AAAAATGTTGTCTCAGCTGTCTT 57.158 34.783 14.67 0.00 0.00 3.01
1626 3200 4.825546 AAATGTTGTCTCAGCTGTCTTG 57.174 40.909 14.67 3.18 0.00 3.02
1627 3201 3.758755 ATGTTGTCTCAGCTGTCTTGA 57.241 42.857 14.67 5.56 0.00 3.02
1628 3202 3.541996 TGTTGTCTCAGCTGTCTTGAA 57.458 42.857 14.67 0.00 0.00 2.69
1629 3203 3.198068 TGTTGTCTCAGCTGTCTTGAAC 58.802 45.455 14.67 11.56 0.00 3.18
1630 3204 3.118629 TGTTGTCTCAGCTGTCTTGAACT 60.119 43.478 14.67 0.00 0.00 3.01
1631 3205 3.377346 TGTCTCAGCTGTCTTGAACTC 57.623 47.619 14.67 0.00 0.00 3.01
1638 3212 5.670485 TCAGCTGTCTTGAACTCTTGTTTA 58.330 37.500 14.67 0.00 36.39 2.01
1639 3213 6.112734 TCAGCTGTCTTGAACTCTTGTTTAA 58.887 36.000 14.67 0.00 36.39 1.52
1646 3222 7.066887 TGTCTTGAACTCTTGTTTAAATGCAGA 59.933 33.333 0.00 0.00 36.39 4.26
1649 3225 8.994429 TTGAACTCTTGTTTAAATGCAGAAAA 57.006 26.923 0.00 0.00 36.39 2.29
1735 3714 8.642935 TTCAGAATGGTGTAATTGTAATGGAA 57.357 30.769 0.00 0.00 36.16 3.53
1763 3747 4.218417 GTGTGCATACATTTCCTTCCTTGT 59.782 41.667 8.93 0.00 39.39 3.16
1802 3786 6.445786 AGATCTACATTTAGTGTTGGGGGTAA 59.554 38.462 0.00 0.00 42.29 2.85
1812 3796 5.631119 AGTGTTGGGGGTAATATATTGAGC 58.369 41.667 8.28 2.68 0.00 4.26
1820 3804 6.013293 GGGGGTAATATATTGAGCTGAGAACT 60.013 42.308 8.28 0.00 0.00 3.01
1856 3840 6.628185 ACAAGTACTAGTATGTTAGTGCACC 58.372 40.000 14.63 0.00 38.33 5.01
1864 3848 7.985752 ACTAGTATGTTAGTGCACCTTATTTCC 59.014 37.037 14.63 0.00 32.78 3.13
1866 3850 4.010667 TGTTAGTGCACCTTATTTCCGT 57.989 40.909 14.63 0.00 0.00 4.69
1956 3962 5.699001 AGGGGATTTTTATTTGTTTGTTCGC 59.301 36.000 0.00 0.00 0.00 4.70
1962 3971 5.786264 TTTATTTGTTTGTTCGCCCCTTA 57.214 34.783 0.00 0.00 0.00 2.69
2038 4060 1.379576 GCAATGCCTCTGGAGCCTT 60.380 57.895 0.00 0.00 0.00 4.35
2040 4062 0.323178 CAATGCCTCTGGAGCCTTGT 60.323 55.000 0.00 0.00 33.00 3.16
2082 4104 5.461737 CCTATGCAATTGTTGTCAAACGTTT 59.538 36.000 7.96 7.96 39.30 3.60
2167 4198 2.102578 AGCACCTCAAGCAAAACAACT 58.897 42.857 0.00 0.00 0.00 3.16
2173 4204 3.243401 CCTCAAGCAAAACAACTACCCAC 60.243 47.826 0.00 0.00 0.00 4.61
2183 4214 0.036388 AACTACCCACCTGTCATGCG 60.036 55.000 0.00 0.00 0.00 4.73
2280 4319 0.521735 GACCCTGATGTTTTGTCCGC 59.478 55.000 0.00 0.00 0.00 5.54
2499 4548 8.918961 ACAAAAATCATAGTTTGTGAAACGAA 57.081 26.923 1.23 0.00 44.24 3.85
2684 4741 2.203337 GGGTGGTTGTGCTGCTCA 60.203 61.111 0.00 0.00 0.00 4.26
2704 4762 7.785033 TGCTCAGGATTTTTCTTCTTCTTTTT 58.215 30.769 0.00 0.00 0.00 1.94
2706 4764 7.708322 GCTCAGGATTTTTCTTCTTCTTTTTGT 59.292 33.333 0.00 0.00 0.00 2.83
2810 4880 5.879223 GCTCAAGGTTGCTGATATGCTATAT 59.121 40.000 0.00 0.00 0.00 0.86
2811 4881 6.036953 GCTCAAGGTTGCTGATATGCTATATC 59.963 42.308 8.40 8.40 0.00 1.63
2812 4882 7.250032 TCAAGGTTGCTGATATGCTATATCT 57.750 36.000 13.67 0.00 0.00 1.98
2813 4883 8.366359 TCAAGGTTGCTGATATGCTATATCTA 57.634 34.615 13.67 4.34 0.00 1.98
2891 5377 4.352887 GAGATTGCTCACTTAGTACGGTC 58.647 47.826 0.00 0.00 40.96 4.79
2897 5383 0.241749 CACTTAGTACGGTCGCCACA 59.758 55.000 0.00 0.00 0.00 4.17
2906 5402 0.526739 CGGTCGCCACATACGATTGA 60.527 55.000 0.00 0.00 42.26 2.57
2907 5403 1.865865 GGTCGCCACATACGATTGAT 58.134 50.000 0.00 0.00 42.26 2.57
2909 5405 2.729882 GGTCGCCACATACGATTGATAC 59.270 50.000 0.00 0.00 42.26 2.24
2915 5411 6.530181 TCGCCACATACGATTGATACATTATC 59.470 38.462 0.00 0.00 33.96 1.75
2924 5420 8.651391 ACGATTGATACATTATCGGTTGTTTA 57.349 30.769 0.00 0.00 43.93 2.01
3017 5516 8.461222 CCAGTATAATCAATTTGCACTCTGAAA 58.539 33.333 0.00 0.00 0.00 2.69
3056 5555 5.691754 CACCCAAACAAAAGAGAATGCTTAC 59.308 40.000 0.00 0.00 0.00 2.34
3124 5644 5.803552 AGCTAGCATCCTCATAATTCTTCC 58.196 41.667 18.83 0.00 0.00 3.46
3173 5694 7.678194 AACAACAAGTTTTCGTGTAATCATG 57.322 32.000 0.00 0.00 41.25 3.07
3174 5695 6.205784 ACAACAAGTTTTCGTGTAATCATGG 58.794 36.000 0.00 0.00 41.25 3.66
3177 5718 6.801575 ACAAGTTTTCGTGTAATCATGGTTT 58.198 32.000 0.00 0.00 40.41 3.27
3182 5723 3.006940 TCGTGTAATCATGGTTTCCTGC 58.993 45.455 0.00 0.00 0.00 4.85
3190 5731 1.064166 CATGGTTTCCTGCCCTCATCT 60.064 52.381 0.00 0.00 0.00 2.90
3222 5763 3.762407 TTTTCCGATCCAGTGAACTCA 57.238 42.857 0.00 0.00 0.00 3.41
3225 5766 2.179427 TCCGATCCAGTGAACTCATGT 58.821 47.619 0.00 0.00 0.00 3.21
3226 5767 3.361786 TCCGATCCAGTGAACTCATGTA 58.638 45.455 0.00 0.00 0.00 2.29
3227 5768 3.381590 TCCGATCCAGTGAACTCATGTAG 59.618 47.826 0.00 0.00 0.00 2.74
3228 5769 3.131223 CCGATCCAGTGAACTCATGTAGT 59.869 47.826 0.00 0.00 41.49 2.73
3242 5783 5.694910 ACTCATGTAGTTTGTTCACTTACGG 59.305 40.000 0.00 0.00 33.35 4.02
3243 5784 5.603596 TCATGTAGTTTGTTCACTTACGGT 58.396 37.500 0.00 0.00 0.00 4.83
3244 5785 6.747125 TCATGTAGTTTGTTCACTTACGGTA 58.253 36.000 0.00 0.00 0.00 4.02
3245 5786 7.208777 TCATGTAGTTTGTTCACTTACGGTAA 58.791 34.615 0.00 0.00 0.00 2.85
3246 5787 7.710044 TCATGTAGTTTGTTCACTTACGGTAAA 59.290 33.333 1.79 0.00 0.00 2.01
3247 5788 8.500773 CATGTAGTTTGTTCACTTACGGTAAAT 58.499 33.333 1.79 0.00 0.00 1.40
3248 5789 7.853524 TGTAGTTTGTTCACTTACGGTAAATG 58.146 34.615 3.07 3.07 0.00 2.32
3249 5790 5.754778 AGTTTGTTCACTTACGGTAAATGC 58.245 37.500 4.55 0.00 0.00 3.56
3250 5791 4.752661 TTGTTCACTTACGGTAAATGCC 57.247 40.909 4.55 0.00 0.00 4.40
3252 5793 3.499157 TGTTCACTTACGGTAAATGCCAC 59.501 43.478 4.55 4.94 0.00 5.01
3253 5794 3.404224 TCACTTACGGTAAATGCCACA 57.596 42.857 4.55 0.00 0.00 4.17
3254 5795 3.331150 TCACTTACGGTAAATGCCACAG 58.669 45.455 4.55 0.00 0.00 3.66
3255 5796 3.071479 CACTTACGGTAAATGCCACAGT 58.929 45.455 1.79 0.00 0.00 3.55
3256 5797 3.071479 ACTTACGGTAAATGCCACAGTG 58.929 45.455 1.79 0.00 0.00 3.66
3257 5798 2.102070 TACGGTAAATGCCACAGTGG 57.898 50.000 16.16 16.16 41.55 4.00
3266 5807 2.985456 CCACAGTGGCCTCTCCTC 59.015 66.667 6.67 0.00 35.26 3.71
3268 5809 1.595882 CACAGTGGCCTCTCCTCAG 59.404 63.158 3.81 0.00 35.26 3.35
3275 5816 3.535962 CCTCTCCTCAGGCGCCTC 61.536 72.222 30.29 0.00 0.00 4.70
3276 5817 2.441901 CTCTCCTCAGGCGCCTCT 60.442 66.667 30.29 3.29 0.00 3.69
3277 5818 2.441164 TCTCCTCAGGCGCCTCTC 60.441 66.667 30.29 0.00 0.00 3.20
3278 5819 3.535962 CTCCTCAGGCGCCTCTCC 61.536 72.222 30.29 0.00 0.00 3.71
3279 5820 4.067512 TCCTCAGGCGCCTCTCCT 62.068 66.667 30.29 1.25 0.00 3.69
3281 5822 3.898509 CTCAGGCGCCTCTCCTCG 61.899 72.222 30.29 15.20 0.00 4.63
3286 5827 4.516195 GCGCCTCTCCTCGGGTTC 62.516 72.222 0.00 0.00 0.00 3.62
3290 5831 0.253327 GCCTCTCCTCGGGTTCAAAT 59.747 55.000 0.00 0.00 0.00 2.32
3291 5832 2.014068 GCCTCTCCTCGGGTTCAAATG 61.014 57.143 0.00 0.00 0.00 2.32
3292 5833 1.555075 CCTCTCCTCGGGTTCAAATGA 59.445 52.381 0.00 0.00 0.00 2.57
3293 5834 2.622436 CTCTCCTCGGGTTCAAATGAC 58.378 52.381 0.00 0.00 0.00 3.06
3294 5835 1.974957 TCTCCTCGGGTTCAAATGACA 59.025 47.619 0.00 0.00 0.00 3.58
3295 5836 2.370519 TCTCCTCGGGTTCAAATGACAA 59.629 45.455 0.00 0.00 0.00 3.18
3296 5837 3.009033 TCTCCTCGGGTTCAAATGACAAT 59.991 43.478 0.00 0.00 0.00 2.71
3297 5838 3.343617 TCCTCGGGTTCAAATGACAATC 58.656 45.455 0.00 0.00 0.00 2.67
3298 5839 3.081061 CCTCGGGTTCAAATGACAATCA 58.919 45.455 0.00 0.00 0.00 2.57
3299 5840 3.127548 CCTCGGGTTCAAATGACAATCAG 59.872 47.826 0.00 0.00 0.00 2.90
3300 5841 2.487762 TCGGGTTCAAATGACAATCAGC 59.512 45.455 0.00 0.00 0.00 4.26
3302 5843 3.305267 CGGGTTCAAATGACAATCAGCAA 60.305 43.478 0.00 0.00 0.00 3.91
3303 5844 3.989817 GGGTTCAAATGACAATCAGCAAC 59.010 43.478 0.00 0.00 0.00 4.17
3304 5845 4.501229 GGGTTCAAATGACAATCAGCAACA 60.501 41.667 0.00 0.00 0.00 3.33
3306 5847 5.697633 GGTTCAAATGACAATCAGCAACATT 59.302 36.000 0.00 0.00 33.50 2.71
3307 5848 6.203338 GGTTCAAATGACAATCAGCAACATTT 59.797 34.615 0.00 0.00 40.29 2.32
3309 5850 7.179927 TCAAATGACAATCAGCAACATTTTG 57.820 32.000 0.00 0.00 38.52 2.44
3319 5860 1.729284 CAACATTTTGCATGAGGGCC 58.271 50.000 0.00 0.00 0.00 5.80
3321 5862 1.350071 ACATTTTGCATGAGGGCCAA 58.650 45.000 6.18 0.00 0.00 4.52
3322 5863 1.276989 ACATTTTGCATGAGGGCCAAG 59.723 47.619 6.18 0.00 0.00 3.61
3323 5864 1.276989 CATTTTGCATGAGGGCCAAGT 59.723 47.619 6.18 0.00 0.00 3.16
3324 5865 0.680618 TTTTGCATGAGGGCCAAGTG 59.319 50.000 6.18 1.53 0.00 3.16
3325 5866 1.186917 TTTGCATGAGGGCCAAGTGG 61.187 55.000 6.18 0.00 38.53 4.00
3326 5867 2.036256 GCATGAGGGCCAAGTGGT 59.964 61.111 6.18 0.00 37.57 4.16
3328 5869 1.075482 CATGAGGGCCAAGTGGTGT 59.925 57.895 6.18 0.00 37.57 4.16
3329 5870 0.962356 CATGAGGGCCAAGTGGTGTC 60.962 60.000 6.18 0.00 37.57 3.67
3341 5882 4.309950 GGTGTCACGCCGGGAAGT 62.310 66.667 2.18 0.00 0.00 3.01
3342 5883 2.280592 GTGTCACGCCGGGAAGTT 60.281 61.111 2.18 0.00 0.00 2.66
3343 5884 2.029964 TGTCACGCCGGGAAGTTC 59.970 61.111 2.18 0.00 0.00 3.01
3346 5887 1.146485 TCACGCCGGGAAGTTCAAA 59.854 52.632 2.18 0.00 0.00 2.69
3347 5888 0.464013 TCACGCCGGGAAGTTCAAAA 60.464 50.000 2.18 0.00 0.00 2.44
3348 5889 0.382515 CACGCCGGGAAGTTCAAAAA 59.617 50.000 2.18 0.00 0.00 1.94
3349 5890 0.666374 ACGCCGGGAAGTTCAAAAAG 59.334 50.000 2.18 0.00 0.00 2.27
3350 5891 0.039527 CGCCGGGAAGTTCAAAAAGG 60.040 55.000 2.18 1.56 0.00 3.11
3351 5892 1.324383 GCCGGGAAGTTCAAAAAGGA 58.676 50.000 2.18 0.00 0.00 3.36
3352 5893 1.893137 GCCGGGAAGTTCAAAAAGGAT 59.107 47.619 2.18 0.00 0.00 3.24
3356 5897 4.521256 CCGGGAAGTTCAAAAAGGATGTAA 59.479 41.667 5.01 0.00 0.00 2.41
3357 5898 5.458015 CGGGAAGTTCAAAAAGGATGTAAC 58.542 41.667 5.01 0.00 0.00 2.50
3358 5899 5.458015 GGGAAGTTCAAAAAGGATGTAACG 58.542 41.667 5.01 0.00 0.00 3.18
3359 5900 5.458015 GGAAGTTCAAAAAGGATGTAACGG 58.542 41.667 5.01 0.00 0.00 4.44
3360 5901 5.009310 GGAAGTTCAAAAAGGATGTAACGGT 59.991 40.000 5.01 0.00 0.00 4.83
3361 5902 6.205270 GGAAGTTCAAAAAGGATGTAACGGTA 59.795 38.462 5.01 0.00 0.00 4.02
3370 6349 7.933215 AAAGGATGTAACGGTAATTTAAGCT 57.067 32.000 0.00 0.00 0.00 3.74
3393 6372 8.604184 AGCTATATCATGGAGAGAATGTCAAAT 58.396 33.333 0.00 0.00 0.00 2.32
3398 6377 5.124936 TCATGGAGAGAATGTCAAATTGCTG 59.875 40.000 0.00 0.00 0.00 4.41
3399 6378 3.192001 TGGAGAGAATGTCAAATTGCTGC 59.808 43.478 0.00 0.00 0.00 5.25
3401 6380 4.164294 GAGAGAATGTCAAATTGCTGCAC 58.836 43.478 0.00 0.00 0.00 4.57
3404 6383 2.336554 ATGTCAAATTGCTGCACGAC 57.663 45.000 0.00 7.72 0.00 4.34
3405 6384 1.020437 TGTCAAATTGCTGCACGACA 58.980 45.000 15.31 15.31 0.00 4.35
3406 6385 1.403323 TGTCAAATTGCTGCACGACAA 59.597 42.857 16.36 0.00 30.88 3.18
3407 6386 1.780860 GTCAAATTGCTGCACGACAAC 59.219 47.619 0.00 0.00 0.00 3.32
3409 6388 2.034432 TCAAATTGCTGCACGACAACAT 59.966 40.909 0.00 0.00 0.00 2.71
3411 6390 1.237533 ATTGCTGCACGACAACATCA 58.762 45.000 0.00 0.00 0.00 3.07
3413 6392 0.813210 TGCTGCACGACAACATCACA 60.813 50.000 0.00 0.00 0.00 3.58
3414 6393 0.518636 GCTGCACGACAACATCACAT 59.481 50.000 0.00 0.00 0.00 3.21
3415 6394 1.731709 GCTGCACGACAACATCACATA 59.268 47.619 0.00 0.00 0.00 2.29
3416 6395 2.222886 GCTGCACGACAACATCACATAG 60.223 50.000 0.00 0.00 0.00 2.23
3417 6396 2.995939 CTGCACGACAACATCACATAGT 59.004 45.455 0.00 0.00 0.00 2.12
3418 6397 2.736192 TGCACGACAACATCACATAGTG 59.264 45.455 0.00 0.00 34.45 2.74
3420 6399 3.181530 GCACGACAACATCACATAGTGAC 60.182 47.826 1.43 0.00 45.65 3.67
3421 6400 3.059438 CACGACAACATCACATAGTGACG 59.941 47.826 1.43 3.39 45.65 4.35
3423 6402 3.917985 CGACAACATCACATAGTGACGAA 59.082 43.478 1.43 0.00 45.65 3.85
3424 6403 4.384547 CGACAACATCACATAGTGACGAAA 59.615 41.667 1.43 0.00 45.65 3.46
3425 6404 5.591643 ACAACATCACATAGTGACGAAAC 57.408 39.130 1.43 0.00 45.65 2.78
3426 6405 5.053811 ACAACATCACATAGTGACGAAACA 58.946 37.500 1.43 0.00 45.65 2.83
3428 6407 6.871492 ACAACATCACATAGTGACGAAACATA 59.129 34.615 1.43 0.00 45.65 2.29
3432 6411 4.862574 TCACATAGTGACGAAACATAGTGC 59.137 41.667 0.00 0.00 37.67 4.40
3433 6412 4.864806 CACATAGTGACGAAACATAGTGCT 59.135 41.667 0.00 0.00 35.23 4.40
3434 6413 4.864806 ACATAGTGACGAAACATAGTGCTG 59.135 41.667 0.00 0.00 0.00 4.41
3435 6414 3.660501 AGTGACGAAACATAGTGCTGA 57.339 42.857 0.00 0.00 0.00 4.26
3436 6415 3.318017 AGTGACGAAACATAGTGCTGAC 58.682 45.455 0.00 0.00 0.00 3.51
3437 6416 3.005897 AGTGACGAAACATAGTGCTGACT 59.994 43.478 0.00 0.00 36.07 3.41
3438 6417 3.121944 GTGACGAAACATAGTGCTGACTG 59.878 47.826 0.00 0.00 33.21 3.51
3473 6457 4.767578 AAGACCATGCTGACTGATACAT 57.232 40.909 0.00 0.00 0.00 2.29
3475 6459 5.465532 AGACCATGCTGACTGATACATAG 57.534 43.478 0.00 0.00 0.00 2.23
3482 6466 4.160252 TGCTGACTGATACATAGTGCTCAA 59.840 41.667 0.00 0.00 0.00 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.555199 AGTGTTGTTCTCTGTGCTCAC 58.445 47.619 0.00 0.00 0.00 3.51
1 2 2.988010 AGTGTTGTTCTCTGTGCTCA 57.012 45.000 0.00 0.00 0.00 4.26
2 3 3.198068 TGAAGTGTTGTTCTCTGTGCTC 58.802 45.455 0.00 0.00 0.00 4.26
3 4 3.266510 TGAAGTGTTGTTCTCTGTGCT 57.733 42.857 0.00 0.00 0.00 4.40
4 5 4.558538 AATGAAGTGTTGTTCTCTGTGC 57.441 40.909 0.00 0.00 0.00 4.57
5 6 6.082338 GCATAATGAAGTGTTGTTCTCTGTG 58.918 40.000 0.00 0.00 0.00 3.66
6 7 5.106948 CGCATAATGAAGTGTTGTTCTCTGT 60.107 40.000 0.00 0.00 0.00 3.41
7 8 5.319139 CGCATAATGAAGTGTTGTTCTCTG 58.681 41.667 0.00 0.00 0.00 3.35
8 9 4.393062 CCGCATAATGAAGTGTTGTTCTCT 59.607 41.667 0.00 0.00 0.00 3.10
9 10 4.154195 ACCGCATAATGAAGTGTTGTTCTC 59.846 41.667 0.00 0.00 0.00 2.87
10 11 4.072131 ACCGCATAATGAAGTGTTGTTCT 58.928 39.130 0.00 0.00 0.00 3.01
11 12 4.419522 ACCGCATAATGAAGTGTTGTTC 57.580 40.909 0.00 0.00 0.00 3.18
12 13 5.950758 TTACCGCATAATGAAGTGTTGTT 57.049 34.783 0.00 0.00 0.00 2.83
24 25 7.040617 TGACCTAAACAAATGTTTACCGCATAA 60.041 33.333 13.28 0.00 45.47 1.90
119 124 9.988350 AAAAGATGTGAATCATGTATTAACGTC 57.012 29.630 14.07 14.07 42.23 4.34
271 277 9.239002 CTATTTCAAAATTTGTCCAAACACGTA 57.761 29.630 5.56 0.00 34.35 3.57
275 281 7.278875 AGCCTATTTCAAAATTTGTCCAAACA 58.721 30.769 5.56 0.00 32.51 2.83
311 317 4.281688 ACAGCCTGTTGCATACTTGAAAAT 59.718 37.500 0.00 0.00 44.83 1.82
312 318 3.636300 ACAGCCTGTTGCATACTTGAAAA 59.364 39.130 0.00 0.00 44.83 2.29
313 319 3.221771 ACAGCCTGTTGCATACTTGAAA 58.778 40.909 0.00 0.00 44.83 2.69
314 320 2.862541 ACAGCCTGTTGCATACTTGAA 58.137 42.857 0.00 0.00 44.83 2.69
342 348 8.527488 CATTTAAAATGCGCATCGTGTATTTTA 58.473 29.630 25.53 19.22 42.86 1.52
387 393 8.213812 GTGTTTAAAATGTGCATTGTGTATGTC 58.786 33.333 0.00 0.00 36.57 3.06
389 395 7.114106 TCGTGTTTAAAATGTGCATTGTGTATG 59.886 33.333 0.00 0.00 37.31 2.39
396 402 5.195001 ACCTCGTGTTTAAAATGTGCATT 57.805 34.783 0.00 0.00 0.00 3.56
456 462 7.702772 TGCATTTAAAACGTGTTGACTTGTATT 59.297 29.630 0.00 0.00 0.00 1.89
491 498 4.640789 TGTTTACCGTGCACATTTTCTT 57.359 36.364 18.64 0.00 0.00 2.52
493 500 4.794169 AGATGTTTACCGTGCACATTTTC 58.206 39.130 18.64 2.98 31.10 2.29
497 504 4.277174 TCAAAAGATGTTTACCGTGCACAT 59.723 37.500 18.64 6.75 33.72 3.21
498 505 3.628032 TCAAAAGATGTTTACCGTGCACA 59.372 39.130 18.64 0.00 0.00 4.57
499 506 4.217754 TCAAAAGATGTTTACCGTGCAC 57.782 40.909 6.82 6.82 0.00 4.57
500 507 4.336993 AGTTCAAAAGATGTTTACCGTGCA 59.663 37.500 0.00 0.00 0.00 4.57
501 508 4.855531 AGTTCAAAAGATGTTTACCGTGC 58.144 39.130 0.00 0.00 0.00 5.34
502 509 6.849305 GTGTAGTTCAAAAGATGTTTACCGTG 59.151 38.462 0.00 0.00 0.00 4.94
503 510 6.539464 TGTGTAGTTCAAAAGATGTTTACCGT 59.461 34.615 0.00 0.00 0.00 4.83
504 511 6.950545 TGTGTAGTTCAAAAGATGTTTACCG 58.049 36.000 0.00 0.00 0.00 4.02
505 512 9.180678 CATTGTGTAGTTCAAAAGATGTTTACC 57.819 33.333 0.00 0.00 0.00 2.85
514 522 9.520204 AGAAATGTTCATTGTGTAGTTCAAAAG 57.480 29.630 0.00 0.00 0.00 2.27
569 577 6.466097 GCGCATCTTAAAAAGTGTTCATACTC 59.534 38.462 0.30 0.00 0.00 2.59
571 579 6.083630 TGCGCATCTTAAAAAGTGTTCATAC 58.916 36.000 5.66 0.00 0.00 2.39
586 597 1.134521 TCCTTACCGATTGCGCATCTT 60.135 47.619 12.75 0.00 35.83 2.40
587 598 0.464036 TCCTTACCGATTGCGCATCT 59.536 50.000 12.75 0.51 35.83 2.90
607 620 0.999406 GGTCCGATCGTCAATGTGTG 59.001 55.000 15.09 0.00 0.00 3.82
608 621 0.457853 CGGTCCGATCGTCAATGTGT 60.458 55.000 15.09 0.00 0.00 3.72
609 622 1.145759 CCGGTCCGATCGTCAATGTG 61.146 60.000 14.39 0.00 0.00 3.21
610 623 1.141019 CCGGTCCGATCGTCAATGT 59.859 57.895 14.39 0.00 0.00 2.71
612 625 2.106332 GCCGGTCCGATCGTCAAT 59.894 61.111 14.39 0.00 0.00 2.57
613 626 3.375239 TGCCGGTCCGATCGTCAA 61.375 61.111 14.39 0.00 0.00 3.18
631 648 1.203994 AGACGTCTTTACCATCCACCG 59.796 52.381 13.58 0.00 0.00 4.94
632 649 2.734492 CGAGACGTCTTTACCATCCACC 60.734 54.545 21.08 0.77 0.00 4.61
640 657 4.444468 CGCTATCTACGAGACGTCTTTAC 58.556 47.826 21.08 6.07 41.54 2.01
671 688 1.665916 CATACCGGCCTGATCGCAG 60.666 63.158 0.00 0.00 41.93 5.18
678 695 3.873812 GTCCCCCATACCGGCCTG 61.874 72.222 0.00 0.00 0.00 4.85
714 1848 3.055819 AGTGTCCGATATGCTTTCACACT 60.056 43.478 0.00 0.00 38.50 3.55
715 1849 3.262420 AGTGTCCGATATGCTTTCACAC 58.738 45.455 0.00 0.00 34.20 3.82
716 1850 3.195610 AGAGTGTCCGATATGCTTTCACA 59.804 43.478 0.00 0.00 0.00 3.58
717 1851 3.553511 CAGAGTGTCCGATATGCTTTCAC 59.446 47.826 0.00 0.00 0.00 3.18
718 1852 3.195610 ACAGAGTGTCCGATATGCTTTCA 59.804 43.478 0.00 0.00 0.00 2.69
719 1853 3.786635 ACAGAGTGTCCGATATGCTTTC 58.213 45.455 0.00 0.00 0.00 2.62
720 1854 3.895232 ACAGAGTGTCCGATATGCTTT 57.105 42.857 0.00 0.00 0.00 3.51
721 1855 4.036971 GTCTACAGAGTGTCCGATATGCTT 59.963 45.833 0.00 0.00 0.00 3.91
722 1856 3.566322 GTCTACAGAGTGTCCGATATGCT 59.434 47.826 0.00 0.00 0.00 3.79
723 1857 3.315470 TGTCTACAGAGTGTCCGATATGC 59.685 47.826 0.00 0.00 0.00 3.14
724 1858 5.500645 TTGTCTACAGAGTGTCCGATATG 57.499 43.478 0.00 0.00 0.00 1.78
725 1859 7.818997 TTATTGTCTACAGAGTGTCCGATAT 57.181 36.000 0.00 0.00 0.00 1.63
726 1860 7.634671 TTTATTGTCTACAGAGTGTCCGATA 57.365 36.000 0.00 0.00 0.00 2.92
727 1861 6.525578 TTTATTGTCTACAGAGTGTCCGAT 57.474 37.500 0.00 0.00 0.00 4.18
728 1862 5.970317 TTTATTGTCTACAGAGTGTCCGA 57.030 39.130 0.00 0.00 0.00 4.55
729 1863 5.455849 CGATTTATTGTCTACAGAGTGTCCG 59.544 44.000 0.00 0.00 0.00 4.79
730 1864 6.561614 TCGATTTATTGTCTACAGAGTGTCC 58.438 40.000 0.00 0.00 0.00 4.02
731 1865 7.755822 ACTTCGATTTATTGTCTACAGAGTGTC 59.244 37.037 0.00 0.00 0.00 3.67
732 1866 7.542477 CACTTCGATTTATTGTCTACAGAGTGT 59.458 37.037 0.00 0.00 0.00 3.55
733 1867 7.542477 ACACTTCGATTTATTGTCTACAGAGTG 59.458 37.037 0.00 0.00 0.00 3.51
734 1868 7.603651 ACACTTCGATTTATTGTCTACAGAGT 58.396 34.615 0.00 0.00 0.00 3.24
735 1869 8.109843 GACACTTCGATTTATTGTCTACAGAG 57.890 38.462 0.00 0.00 34.89 3.35
753 1887 4.321217 CGATACTTTCACACTCGACACTTC 59.679 45.833 0.00 0.00 0.00 3.01
754 1888 4.023450 TCGATACTTTCACACTCGACACTT 60.023 41.667 0.00 0.00 33.80 3.16
755 1889 3.501062 TCGATACTTTCACACTCGACACT 59.499 43.478 0.00 0.00 33.80 3.55
756 1890 3.818387 TCGATACTTTCACACTCGACAC 58.182 45.455 0.00 0.00 33.80 3.67
757 1891 3.749609 TCTCGATACTTTCACACTCGACA 59.250 43.478 0.00 0.00 34.89 4.35
758 1892 4.093115 TCTCTCGATACTTTCACACTCGAC 59.907 45.833 0.00 0.00 34.89 4.20
759 1893 4.093115 GTCTCTCGATACTTTCACACTCGA 59.907 45.833 0.00 0.00 36.92 4.04
760 1894 4.336101 GTCTCTCGATACTTTCACACTCG 58.664 47.826 0.00 0.00 0.00 4.18
761 1895 4.093115 TCGTCTCTCGATACTTTCACACTC 59.907 45.833 0.00 0.00 44.01 3.51
762 1896 4.001652 TCGTCTCTCGATACTTTCACACT 58.998 43.478 0.00 0.00 44.01 3.55
776 1910 2.798283 CTCTAGTCCGTGATCGTCTCTC 59.202 54.545 0.00 0.00 35.01 3.20
778 1912 2.540931 GACTCTAGTCCGTGATCGTCTC 59.459 54.545 0.00 0.00 39.07 3.36
786 1920 4.023107 TCTGTTTCTTGACTCTAGTCCGTG 60.023 45.833 7.63 0.00 44.15 4.94
787 1921 4.142790 TCTGTTTCTTGACTCTAGTCCGT 58.857 43.478 7.63 0.00 44.15 4.69
788 1922 4.456222 TCTCTGTTTCTTGACTCTAGTCCG 59.544 45.833 7.63 0.00 44.15 4.79
789 1923 5.105917 CCTCTCTGTTTCTTGACTCTAGTCC 60.106 48.000 7.63 0.00 44.15 3.85
790 1924 5.105917 CCCTCTCTGTTTCTTGACTCTAGTC 60.106 48.000 3.08 3.08 44.97 2.59
791 1925 4.770010 CCCTCTCTGTTTCTTGACTCTAGT 59.230 45.833 0.00 0.00 0.00 2.57
792 1926 5.013547 TCCCTCTCTGTTTCTTGACTCTAG 58.986 45.833 0.00 0.00 0.00 2.43
793 1927 4.999310 TCCCTCTCTGTTTCTTGACTCTA 58.001 43.478 0.00 0.00 0.00 2.43
795 1929 3.616317 GCTCCCTCTCTGTTTCTTGACTC 60.616 52.174 0.00 0.00 0.00 3.36
866 2057 0.741326 CGTTCAGCTAGCAGCCTAGA 59.259 55.000 18.83 1.81 43.77 2.43
881 2072 2.876645 CGGAGAGTGAGCGCGTTC 60.877 66.667 16.69 16.69 0.00 3.95
882 2073 4.421479 CCGGAGAGTGAGCGCGTT 62.421 66.667 8.43 0.00 0.00 4.84
885 2076 2.507324 GAACCGGAGAGTGAGCGC 60.507 66.667 9.46 0.00 0.00 5.92
900 2264 3.241530 ACTGCCCAGTGAGCGGAA 61.242 61.111 13.02 0.00 40.75 4.30
914 2290 5.450550 GGTGGTTTTCTCCTCTTTTTCACTG 60.451 44.000 0.00 0.00 0.00 3.66
967 2352 0.251787 CCTCCCTCCCCAACCAAAAG 60.252 60.000 0.00 0.00 0.00 2.27
968 2353 0.703056 TCCTCCCTCCCCAACCAAAA 60.703 55.000 0.00 0.00 0.00 2.44
969 2354 1.072538 TCCTCCCTCCCCAACCAAA 60.073 57.895 0.00 0.00 0.00 3.28
970 2355 1.541368 CTCCTCCCTCCCCAACCAA 60.541 63.158 0.00 0.00 0.00 3.67
972 2357 3.412408 GCTCCTCCCTCCCCAACC 61.412 72.222 0.00 0.00 0.00 3.77
973 2358 3.787001 CGCTCCTCCCTCCCCAAC 61.787 72.222 0.00 0.00 0.00 3.77
993 2399 1.128136 CTGAAGTGCAGCATCGTCTTG 59.872 52.381 0.00 0.00 37.90 3.02
1067 2473 1.222936 GGCACCATCTCCACCTCTG 59.777 63.158 0.00 0.00 0.00 3.35
1125 2555 4.179579 GCAGGCGCATTCCCGTTC 62.180 66.667 10.83 0.00 38.36 3.95
1126 2556 4.722700 AGCAGGCGCATTCCCGTT 62.723 61.111 10.83 0.00 42.27 4.44
1235 2665 1.521450 GGAGAAGTCGTCGGTGGACA 61.521 60.000 0.00 0.00 43.61 4.02
1282 2712 1.668419 CATCCATCCACGAAGGGTTC 58.332 55.000 0.00 0.00 38.24 3.62
1285 2715 0.767375 ATCCATCCATCCACGAAGGG 59.233 55.000 0.00 0.00 38.24 3.95
1291 2721 1.272313 CCCATCCATCCATCCATCCAC 60.272 57.143 0.00 0.00 0.00 4.02
1366 2807 1.238439 CGGGCAGTGTTCTGAAACAT 58.762 50.000 0.00 0.00 46.58 2.71
1427 2980 4.883759 TGGAGAATCATAAGGAGGAGTCA 58.116 43.478 0.00 0.00 33.09 3.41
1430 2983 6.054295 CACTTTGGAGAATCATAAGGAGGAG 58.946 44.000 0.00 0.00 36.25 3.69
1440 2994 5.072055 TGAGCATTTCACTTTGGAGAATCA 58.928 37.500 0.00 0.00 36.25 2.57
1441 2995 5.633830 TGAGCATTTCACTTTGGAGAATC 57.366 39.130 0.00 0.00 0.00 2.52
1471 3025 6.940739 AGTATAGCTACATCTAAATGCCCAG 58.059 40.000 0.00 0.00 36.26 4.45
1510 3064 3.675228 GCAGTCATCCAAAGGCAGATTTG 60.675 47.826 2.29 2.29 39.41 2.32
1511 3065 2.494870 GCAGTCATCCAAAGGCAGATTT 59.505 45.455 0.00 0.00 0.00 2.17
1512 3066 2.097825 GCAGTCATCCAAAGGCAGATT 58.902 47.619 0.00 0.00 0.00 2.40
1513 3067 1.005097 TGCAGTCATCCAAAGGCAGAT 59.995 47.619 0.00 0.00 0.00 2.90
1514 3068 0.401356 TGCAGTCATCCAAAGGCAGA 59.599 50.000 0.00 0.00 0.00 4.26
1515 3069 1.471119 ATGCAGTCATCCAAAGGCAG 58.529 50.000 0.00 0.00 34.43 4.85
1516 3070 2.025981 ACTATGCAGTCATCCAAAGGCA 60.026 45.455 0.00 0.00 34.22 4.75
1532 3086 4.701765 AGAACTGGCTAATGCAGACTATG 58.298 43.478 0.00 0.00 41.91 2.23
1533 3087 5.104776 TGAAGAACTGGCTAATGCAGACTAT 60.105 40.000 0.00 0.00 41.91 2.12
1534 3088 4.222810 TGAAGAACTGGCTAATGCAGACTA 59.777 41.667 0.00 0.00 41.91 2.59
1535 3089 3.008375 TGAAGAACTGGCTAATGCAGACT 59.992 43.478 0.00 0.00 41.91 3.24
1537 3091 3.008375 ACTGAAGAACTGGCTAATGCAGA 59.992 43.478 0.00 0.00 41.91 4.26
1538 3092 3.126514 CACTGAAGAACTGGCTAATGCAG 59.873 47.826 0.00 0.00 41.91 4.41
1539 3093 3.076621 CACTGAAGAACTGGCTAATGCA 58.923 45.455 0.00 0.00 41.91 3.96
1540 3094 3.077359 ACACTGAAGAACTGGCTAATGC 58.923 45.455 0.00 0.00 38.76 3.56
1541 3095 4.391216 CAGACACTGAAGAACTGGCTAATG 59.609 45.833 0.00 0.00 32.44 1.90
1542 3096 4.573900 CAGACACTGAAGAACTGGCTAAT 58.426 43.478 0.00 0.00 32.44 1.73
1543 3097 3.803715 GCAGACACTGAAGAACTGGCTAA 60.804 47.826 2.81 0.00 32.44 3.09
1544 3098 2.289072 GCAGACACTGAAGAACTGGCTA 60.289 50.000 2.81 0.00 32.44 3.93
1545 3099 1.542108 GCAGACACTGAAGAACTGGCT 60.542 52.381 2.81 0.00 32.44 4.75
1546 3100 0.871057 GCAGACACTGAAGAACTGGC 59.129 55.000 2.81 0.00 32.44 4.85
1548 3102 2.540265 AGGCAGACACTGAAGAACTG 57.460 50.000 2.81 0.00 32.44 3.16
1550 3104 2.291741 CCAAAGGCAGACACTGAAGAAC 59.708 50.000 2.81 0.00 32.44 3.01
1551 3105 2.172505 TCCAAAGGCAGACACTGAAGAA 59.827 45.455 2.81 0.00 32.44 2.52
1552 3106 1.768275 TCCAAAGGCAGACACTGAAGA 59.232 47.619 2.81 0.00 32.44 2.87
1553 3107 2.260844 TCCAAAGGCAGACACTGAAG 57.739 50.000 2.81 0.00 32.44 3.02
1554 3108 2.957402 ATCCAAAGGCAGACACTGAA 57.043 45.000 2.81 0.00 32.44 3.02
1555 3109 3.519107 TGATATCCAAAGGCAGACACTGA 59.481 43.478 0.00 0.00 32.44 3.41
1558 3112 4.454678 TCATGATATCCAAAGGCAGACAC 58.545 43.478 0.00 0.00 0.00 3.67
1559 3113 4.776435 TCATGATATCCAAAGGCAGACA 57.224 40.909 0.00 0.00 0.00 3.41
1561 3115 5.837770 AGATCATGATATCCAAAGGCAGA 57.162 39.130 8.54 0.00 0.00 4.26
1562 3116 5.335740 GCAAGATCATGATATCCAAAGGCAG 60.336 44.000 8.54 0.00 0.00 4.85
1563 3117 4.521639 GCAAGATCATGATATCCAAAGGCA 59.478 41.667 8.54 0.00 0.00 4.75
1564 3118 4.765856 AGCAAGATCATGATATCCAAAGGC 59.234 41.667 8.54 4.58 0.00 4.35
1565 3119 5.415077 GGAGCAAGATCATGATATCCAAAGG 59.585 44.000 8.54 0.00 0.00 3.11
1566 3120 5.415077 GGGAGCAAGATCATGATATCCAAAG 59.585 44.000 8.54 0.00 0.00 2.77
1567 3121 5.074102 AGGGAGCAAGATCATGATATCCAAA 59.926 40.000 8.54 0.00 0.00 3.28
1568 3122 4.600547 AGGGAGCAAGATCATGATATCCAA 59.399 41.667 8.54 0.00 0.00 3.53
1569 3123 4.019591 CAGGGAGCAAGATCATGATATCCA 60.020 45.833 8.54 0.00 0.00 3.41
1570 3124 4.019501 ACAGGGAGCAAGATCATGATATCC 60.020 45.833 8.54 10.75 0.00 2.59
1571 3125 4.936411 CACAGGGAGCAAGATCATGATATC 59.064 45.833 8.54 0.00 0.00 1.63
1572 3126 4.596212 TCACAGGGAGCAAGATCATGATAT 59.404 41.667 8.54 1.65 0.00 1.63
1575 3129 2.190538 TCACAGGGAGCAAGATCATGA 58.809 47.619 1.25 0.00 0.00 3.07
1583 3137 2.957402 AGTTGAATCACAGGGAGCAA 57.043 45.000 0.00 0.00 0.00 3.91
1600 3169 6.058183 AGACAGCTGAGACAACATTTTTAGT 58.942 36.000 23.35 0.00 0.00 2.24
1604 3173 4.883585 TCAAGACAGCTGAGACAACATTTT 59.116 37.500 23.35 0.00 0.00 1.82
1624 3198 8.994429 TTTTCTGCATTTAAACAAGAGTTCAA 57.006 26.923 0.00 0.00 36.84 2.69
1625 3199 8.250332 ACTTTTCTGCATTTAAACAAGAGTTCA 58.750 29.630 0.00 0.00 36.84 3.18
1626 3200 8.634475 ACTTTTCTGCATTTAAACAAGAGTTC 57.366 30.769 0.00 0.00 36.84 3.01
1627 3201 9.435688 AAACTTTTCTGCATTTAAACAAGAGTT 57.564 25.926 0.00 0.00 40.40 3.01
1630 3204 9.030301 GCTAAACTTTTCTGCATTTAAACAAGA 57.970 29.630 0.00 0.00 0.00 3.02
1631 3205 8.816144 TGCTAAACTTTTCTGCATTTAAACAAG 58.184 29.630 0.00 0.00 0.00 3.16
1646 3222 7.437862 TGATTTTCGCAGAAATGCTAAACTTTT 59.562 29.630 4.91 0.00 45.90 2.27
1649 3225 6.012658 TGATTTTCGCAGAAATGCTAAACT 57.987 33.333 4.91 0.00 45.90 2.66
1735 3714 5.393027 GGAAGGAAATGTATGCACACGATTT 60.393 40.000 5.57 5.57 37.54 2.17
1763 3747 8.868522 AAATGTAGATCTTCAGATGTTTTCCA 57.131 30.769 0.00 0.00 34.37 3.53
1812 3796 8.581057 ACTTGTTTCGCATATATAGTTCTCAG 57.419 34.615 0.00 0.00 0.00 3.35
1856 3840 6.017109 CCATCTAATTGGGTCACGGAAATAAG 60.017 42.308 0.00 0.00 32.80 1.73
1864 3848 1.670811 GCACCATCTAATTGGGTCACG 59.329 52.381 0.00 0.00 41.35 4.35
1866 3850 3.448093 TTGCACCATCTAATTGGGTCA 57.552 42.857 0.00 0.00 41.35 4.02
1954 3960 3.753294 AGTTCATCTACATAAGGGGCG 57.247 47.619 0.00 0.00 0.00 6.13
1956 3962 9.277783 CAAGAATAAGTTCATCTACATAAGGGG 57.722 37.037 0.00 0.00 36.79 4.79
1962 3971 9.436957 AACGAACAAGAATAAGTTCATCTACAT 57.563 29.630 0.00 0.00 43.20 2.29
2136 4159 5.012239 TGCTTGAGGTGCTTGAGAAAATAT 58.988 37.500 0.00 0.00 0.00 1.28
2147 4178 2.102578 AGTTGTTTTGCTTGAGGTGCT 58.897 42.857 0.00 0.00 0.00 4.40
2167 4198 0.321210 CAACGCATGACAGGTGGGTA 60.321 55.000 5.56 0.00 41.20 3.69
2173 4204 2.118683 CAAAACACAACGCATGACAGG 58.881 47.619 0.00 0.00 0.00 4.00
2280 4319 2.301296 AGATCAGTGTTCCTGTGACCTG 59.699 50.000 0.00 0.00 42.19 4.00
2499 4548 4.279043 GCGCAAACTGCCCGGTTT 62.279 61.111 0.30 0.00 41.12 3.27
2684 4741 8.078060 TCCACAAAAAGAAGAAGAAAAATCCT 57.922 30.769 0.00 0.00 0.00 3.24
2891 5377 4.990543 AATGTATCAATCGTATGTGGCG 57.009 40.909 0.00 0.00 0.00 5.69
2897 5383 8.827177 AACAACCGATAATGTATCAATCGTAT 57.173 30.769 0.00 0.00 40.60 3.06
2966 5463 8.691797 GGAGTCTCTAGTTCATACTTCAGAAAT 58.308 37.037 0.00 0.00 35.78 2.17
3163 5684 2.427095 GGGCAGGAAACCATGATTACAC 59.573 50.000 0.00 0.00 0.00 2.90
3173 5694 1.141858 CCTAGATGAGGGCAGGAAACC 59.858 57.143 0.00 0.00 42.39 3.27
3174 5695 2.103941 CTCCTAGATGAGGGCAGGAAAC 59.896 54.545 0.00 0.00 46.70 2.78
3177 5718 1.235756 TCTCCTAGATGAGGGCAGGA 58.764 55.000 0.00 0.00 46.70 3.86
3201 5742 4.079980 TGAGTTCACTGGATCGGAAAAA 57.920 40.909 0.00 0.00 0.00 1.94
3203 5744 3.007940 ACATGAGTTCACTGGATCGGAAA 59.992 43.478 0.00 0.00 0.00 3.13
3204 5745 2.567169 ACATGAGTTCACTGGATCGGAA 59.433 45.455 0.00 0.00 0.00 4.30
3205 5746 2.179427 ACATGAGTTCACTGGATCGGA 58.821 47.619 0.00 0.00 0.00 4.55
3206 5747 2.680312 ACATGAGTTCACTGGATCGG 57.320 50.000 0.00 0.00 0.00 4.18
3207 5748 4.377839 ACTACATGAGTTCACTGGATCG 57.622 45.455 0.00 0.00 33.13 3.69
3218 5759 5.694910 CCGTAAGTGAACAAACTACATGAGT 59.305 40.000 0.00 0.00 41.56 3.41
3219 5760 5.694910 ACCGTAAGTGAACAAACTACATGAG 59.305 40.000 0.00 0.00 0.00 2.90
3220 5761 5.603596 ACCGTAAGTGAACAAACTACATGA 58.396 37.500 0.00 0.00 0.00 3.07
3221 5762 5.917541 ACCGTAAGTGAACAAACTACATG 57.082 39.130 0.00 0.00 0.00 3.21
3222 5763 8.500773 CATTTACCGTAAGTGAACAAACTACAT 58.499 33.333 7.81 0.00 0.00 2.29
3225 5766 6.073112 GGCATTTACCGTAAGTGAACAAACTA 60.073 38.462 15.82 0.00 0.00 2.24
3226 5767 5.278120 GGCATTTACCGTAAGTGAACAAACT 60.278 40.000 15.82 0.00 0.00 2.66
3227 5768 4.913345 GGCATTTACCGTAAGTGAACAAAC 59.087 41.667 15.82 0.00 0.00 2.93
3228 5769 4.579340 TGGCATTTACCGTAAGTGAACAAA 59.421 37.500 15.82 0.00 0.00 2.83
3229 5770 4.023878 GTGGCATTTACCGTAAGTGAACAA 60.024 41.667 15.82 0.00 0.00 2.83
3230 5771 3.499157 GTGGCATTTACCGTAAGTGAACA 59.501 43.478 15.82 11.07 0.00 3.18
3231 5772 3.499157 TGTGGCATTTACCGTAAGTGAAC 59.501 43.478 15.82 12.82 0.00 3.18
3234 5775 3.071479 ACTGTGGCATTTACCGTAAGTG 58.929 45.455 8.95 8.95 0.00 3.16
3235 5776 3.071479 CACTGTGGCATTTACCGTAAGT 58.929 45.455 0.00 0.00 0.00 2.24
3236 5777 2.418628 CCACTGTGGCATTTACCGTAAG 59.581 50.000 14.87 0.00 0.00 2.34
3238 5779 2.102070 CCACTGTGGCATTTACCGTA 57.898 50.000 14.87 0.00 0.00 4.02
3239 5780 2.941210 CCACTGTGGCATTTACCGT 58.059 52.632 14.87 0.00 0.00 4.83
3249 5790 1.897225 CTGAGGAGAGGCCACTGTGG 61.897 65.000 22.46 22.46 41.55 4.17
3250 5791 1.595882 CTGAGGAGAGGCCACTGTG 59.404 63.158 7.70 0.00 40.02 3.66
3252 5793 3.307445 CCTGAGGAGAGGCCACTG 58.693 66.667 7.70 0.00 40.02 3.66
3259 5800 2.441901 AGAGGCGCCTGAGGAGAG 60.442 66.667 38.41 0.00 0.00 3.20
3260 5801 2.441164 GAGAGGCGCCTGAGGAGA 60.441 66.667 38.41 0.00 0.00 3.71
3261 5802 3.535962 GGAGAGGCGCCTGAGGAG 61.536 72.222 38.41 0.00 0.00 3.69
3263 5804 3.535962 GAGGAGAGGCGCCTGAGG 61.536 72.222 38.41 0.00 32.83 3.86
3264 5805 3.898509 CGAGGAGAGGCGCCTGAG 61.899 72.222 38.41 14.19 32.83 3.35
3270 5811 2.167398 TTTGAACCCGAGGAGAGGCG 62.167 60.000 0.00 0.00 0.00 5.52
3271 5812 0.253327 ATTTGAACCCGAGGAGAGGC 59.747 55.000 0.00 0.00 0.00 4.70
3272 5813 1.555075 TCATTTGAACCCGAGGAGAGG 59.445 52.381 0.00 0.00 0.00 3.69
3273 5814 2.028112 TGTCATTTGAACCCGAGGAGAG 60.028 50.000 0.00 0.00 0.00 3.20
3274 5815 1.974957 TGTCATTTGAACCCGAGGAGA 59.025 47.619 0.00 0.00 0.00 3.71
3275 5816 2.472695 TGTCATTTGAACCCGAGGAG 57.527 50.000 0.00 0.00 0.00 3.69
3276 5817 2.940994 TTGTCATTTGAACCCGAGGA 57.059 45.000 0.00 0.00 0.00 3.71
3277 5818 3.081061 TGATTGTCATTTGAACCCGAGG 58.919 45.455 0.00 0.00 0.00 4.63
3278 5819 3.426695 GCTGATTGTCATTTGAACCCGAG 60.427 47.826 0.00 0.00 0.00 4.63
3279 5820 2.487762 GCTGATTGTCATTTGAACCCGA 59.512 45.455 0.00 0.00 0.00 5.14
3281 5822 3.940209 TGCTGATTGTCATTTGAACCC 57.060 42.857 0.00 0.00 0.00 4.11
3282 5823 4.619973 TGTTGCTGATTGTCATTTGAACC 58.380 39.130 0.00 0.00 0.00 3.62
3283 5824 6.774354 AATGTTGCTGATTGTCATTTGAAC 57.226 33.333 0.00 0.00 0.00 3.18
3285 5826 7.179927 CAAAATGTTGCTGATTGTCATTTGA 57.820 32.000 0.00 0.00 38.27 2.69
3300 5841 1.002201 TGGCCCTCATGCAAAATGTTG 59.998 47.619 0.00 0.00 37.83 3.33
3302 5843 1.276989 CTTGGCCCTCATGCAAAATGT 59.723 47.619 0.00 0.00 0.00 2.71
3303 5844 1.276989 ACTTGGCCCTCATGCAAAATG 59.723 47.619 0.00 0.00 0.00 2.32
3304 5845 1.276989 CACTTGGCCCTCATGCAAAAT 59.723 47.619 0.00 0.00 0.00 1.82
3306 5847 1.186917 CCACTTGGCCCTCATGCAAA 61.187 55.000 0.00 0.00 0.00 3.68
3307 5848 1.607178 CCACTTGGCCCTCATGCAA 60.607 57.895 0.00 0.00 0.00 4.08
3309 5850 2.036256 ACCACTTGGCCCTCATGC 59.964 61.111 0.00 0.00 39.32 4.06
3310 5851 0.962356 GACACCACTTGGCCCTCATG 60.962 60.000 0.00 0.00 39.32 3.07
3311 5852 1.380302 GACACCACTTGGCCCTCAT 59.620 57.895 0.00 0.00 39.32 2.90
3313 5854 1.600916 GTGACACCACTTGGCCCTC 60.601 63.158 0.00 0.00 40.10 4.30
3314 5855 2.515901 GTGACACCACTTGGCCCT 59.484 61.111 0.00 0.00 40.10 5.19
3316 5857 3.660111 GCGTGACACCACTTGGCC 61.660 66.667 0.00 0.00 41.06 5.36
3317 5858 3.660111 GGCGTGACACCACTTGGC 61.660 66.667 0.00 0.00 41.06 4.52
3318 5859 3.345808 CGGCGTGACACCACTTGG 61.346 66.667 0.00 0.00 41.06 3.61
3319 5860 3.345808 CCGGCGTGACACCACTTG 61.346 66.667 6.01 0.00 41.06 3.16
3322 5863 4.612412 TTCCCGGCGTGACACCAC 62.612 66.667 6.01 0.00 39.86 4.16
3323 5864 4.308458 CTTCCCGGCGTGACACCA 62.308 66.667 6.01 0.00 0.00 4.17
3324 5865 3.819877 AACTTCCCGGCGTGACACC 62.820 63.158 6.01 0.00 0.00 4.16
3325 5866 2.280592 AACTTCCCGGCGTGACAC 60.281 61.111 6.01 0.00 0.00 3.67
3326 5867 2.029964 GAACTTCCCGGCGTGACA 59.970 61.111 6.01 0.00 0.00 3.58
3328 5869 0.464013 TTTTGAACTTCCCGGCGTGA 60.464 50.000 6.01 0.00 0.00 4.35
3329 5870 0.382515 TTTTTGAACTTCCCGGCGTG 59.617 50.000 6.01 0.00 0.00 5.34
3332 5873 1.324383 TCCTTTTTGAACTTCCCGGC 58.676 50.000 0.00 0.00 0.00 6.13
3333 5874 2.890945 ACATCCTTTTTGAACTTCCCGG 59.109 45.455 0.00 0.00 0.00 5.73
3334 5875 5.458015 GTTACATCCTTTTTGAACTTCCCG 58.542 41.667 0.00 0.00 0.00 5.14
3337 5878 6.068473 ACCGTTACATCCTTTTTGAACTTC 57.932 37.500 0.00 0.00 0.00 3.01
3338 5879 7.571080 TTACCGTTACATCCTTTTTGAACTT 57.429 32.000 0.00 0.00 0.00 2.66
3343 5884 8.856247 GCTTAAATTACCGTTACATCCTTTTTG 58.144 33.333 0.00 0.00 0.00 2.44
3346 5887 7.933215 AGCTTAAATTACCGTTACATCCTTT 57.067 32.000 0.00 0.00 0.00 3.11
3356 5897 8.812972 TCTCCATGATATAGCTTAAATTACCGT 58.187 33.333 0.00 0.00 0.00 4.83
3357 5898 9.307121 CTCTCCATGATATAGCTTAAATTACCG 57.693 37.037 0.00 0.00 0.00 4.02
3370 6349 9.006839 GCAATTTGACATTCTCTCCATGATATA 57.993 33.333 0.00 0.00 0.00 0.86
3379 6358 4.164294 GTGCAGCAATTTGACATTCTCTC 58.836 43.478 0.00 0.00 0.00 3.20
3393 6372 0.307453 GTGATGTTGTCGTGCAGCAA 59.693 50.000 0.00 0.00 41.53 3.91
3398 6377 2.993220 TCACTATGTGATGTTGTCGTGC 59.007 45.455 0.00 0.00 37.67 5.34
3399 6378 3.059438 CGTCACTATGTGATGTTGTCGTG 59.941 47.826 10.70 0.00 44.63 4.35
3401 6380 3.498082 TCGTCACTATGTGATGTTGTCG 58.502 45.455 16.39 8.98 46.18 4.35
3404 6383 5.590104 TGTTTCGTCACTATGTGATGTTG 57.410 39.130 16.39 3.82 46.18 3.33
3405 6384 7.063426 CACTATGTTTCGTCACTATGTGATGTT 59.937 37.037 16.39 4.57 46.18 2.71
3406 6385 6.531594 CACTATGTTTCGTCACTATGTGATGT 59.468 38.462 16.39 3.51 46.18 3.06
3409 6388 4.862574 GCACTATGTTTCGTCACTATGTGA 59.137 41.667 0.00 0.00 40.50 3.58
3411 6390 4.864806 CAGCACTATGTTTCGTCACTATGT 59.135 41.667 0.00 0.00 0.00 2.29
3413 6392 5.103000 GTCAGCACTATGTTTCGTCACTAT 58.897 41.667 0.00 0.00 0.00 2.12
3414 6393 4.217767 AGTCAGCACTATGTTTCGTCACTA 59.782 41.667 0.00 0.00 0.00 2.74
3415 6394 3.005897 AGTCAGCACTATGTTTCGTCACT 59.994 43.478 0.00 0.00 0.00 3.41
3416 6395 3.121944 CAGTCAGCACTATGTTTCGTCAC 59.878 47.826 0.00 0.00 0.00 3.67
3417 6396 3.005367 TCAGTCAGCACTATGTTTCGTCA 59.995 43.478 0.00 0.00 0.00 4.35
3418 6397 3.575630 TCAGTCAGCACTATGTTTCGTC 58.424 45.455 0.00 0.00 0.00 4.20
3420 6399 6.311445 AGTTTATCAGTCAGCACTATGTTTCG 59.689 38.462 0.00 0.00 0.00 3.46
3421 6400 7.463383 CGAGTTTATCAGTCAGCACTATGTTTC 60.463 40.741 0.00 0.00 0.00 2.78
3423 6402 5.807520 CGAGTTTATCAGTCAGCACTATGTT 59.192 40.000 0.00 0.00 0.00 2.71
3424 6403 5.125578 TCGAGTTTATCAGTCAGCACTATGT 59.874 40.000 0.00 0.00 0.00 2.29
3425 6404 5.457148 GTCGAGTTTATCAGTCAGCACTATG 59.543 44.000 0.00 0.00 0.00 2.23
3426 6405 5.125578 TGTCGAGTTTATCAGTCAGCACTAT 59.874 40.000 0.00 0.00 0.00 2.12
3428 6407 3.255888 TGTCGAGTTTATCAGTCAGCACT 59.744 43.478 0.00 0.00 0.00 4.40
3432 6411 6.128795 GGTCTTTTGTCGAGTTTATCAGTCAG 60.129 42.308 0.00 0.00 0.00 3.51
3433 6412 5.694910 GGTCTTTTGTCGAGTTTATCAGTCA 59.305 40.000 0.00 0.00 0.00 3.41
3434 6413 5.694910 TGGTCTTTTGTCGAGTTTATCAGTC 59.305 40.000 0.00 0.00 0.00 3.51
3435 6414 5.607477 TGGTCTTTTGTCGAGTTTATCAGT 58.393 37.500 0.00 0.00 0.00 3.41
3436 6415 6.537566 CATGGTCTTTTGTCGAGTTTATCAG 58.462 40.000 0.00 0.00 0.00 2.90
3437 6416 5.106712 GCATGGTCTTTTGTCGAGTTTATCA 60.107 40.000 0.00 0.00 0.00 2.15
3438 6417 5.122396 AGCATGGTCTTTTGTCGAGTTTATC 59.878 40.000 0.00 0.00 0.00 1.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.