Multiple sequence alignment - TraesCS2D01G555800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G555800 chr2D 100.000 5590 0 0 1 5590 629627908 629622319 0.000000e+00 10323.0
1 TraesCS2D01G555800 chr2D 79.643 560 103 8 2329 2884 629481433 629480881 5.250000e-105 392.0
2 TraesCS2D01G555800 chr2D 81.210 463 87 0 2923 3385 629404217 629403755 1.900000e-99 374.0
3 TraesCS2D01G555800 chr2D 80.421 475 81 7 2923 3385 629559480 629559006 8.910000e-93 351.0
4 TraesCS2D01G555800 chr2D 84.561 285 44 0 3392 3676 629451414 629451130 3.300000e-72 283.0
5 TraesCS2D01G555800 chr2D 82.609 299 52 0 4231 4529 629995859 629996157 1.190000e-66 265.0
6 TraesCS2D01G555800 chr2D 82.867 286 47 2 3392 3676 629995168 629995452 7.190000e-64 255.0
7 TraesCS2D01G555800 chr2D 80.349 229 41 4 1034 1260 629420531 629420305 2.680000e-38 171.0
8 TraesCS2D01G555800 chr2B 94.653 1814 80 4 1896 3709 772541790 772539994 0.000000e+00 2796.0
9 TraesCS2D01G555800 chr2B 80.505 2493 413 44 2166 4611 772485464 772482998 0.000000e+00 1844.0
10 TraesCS2D01G555800 chr2B 86.132 1608 149 34 3713 5293 772326224 772324664 0.000000e+00 1666.0
11 TraesCS2D01G555800 chr2B 91.423 1061 73 8 4010 5064 772537776 772536728 0.000000e+00 1439.0
12 TraesCS2D01G555800 chr2B 81.708 1405 217 27 2319 3709 772327662 772326284 0.000000e+00 1134.0
13 TraesCS2D01G555800 chr2B 94.205 673 26 7 1 664 772546023 772545355 0.000000e+00 1014.0
14 TraesCS2D01G555800 chr2B 75.838 1461 275 52 1989 3385 771957526 771958972 0.000000e+00 671.0
15 TraesCS2D01G555800 chr2B 78.084 981 193 19 1912 2881 772596701 772597670 8.010000e-168 601.0
16 TraesCS2D01G555800 chr2B 87.991 433 25 6 1442 1868 772542188 772541777 2.340000e-133 486.0
17 TraesCS2D01G555800 chr2B 75.917 1009 205 31 1896 2884 772601807 772602797 3.030000e-132 483.0
18 TraesCS2D01G555800 chr2B 94.500 200 11 0 3714 3913 772538085 772537886 5.440000e-80 309.0
19 TraesCS2D01G555800 chr2B 90.455 220 11 4 1149 1362 772542853 772542638 1.190000e-71 281.0
20 TraesCS2D01G555800 chr2B 93.642 173 4 6 677 846 772545080 772544912 9.300000e-63 252.0
21 TraesCS2D01G555800 chr2B 80.831 313 58 2 3392 3703 772352855 772352544 1.560000e-60 244.0
22 TraesCS2D01G555800 chr2B 89.474 152 10 2 878 1029 772543528 772543383 2.660000e-43 187.0
23 TraesCS2D01G555800 chr2B 80.081 246 23 13 1427 1659 690786875 690786643 5.800000e-35 159.0
24 TraesCS2D01G555800 chr2B 90.991 111 9 1 5478 5587 772324678 772324568 1.250000e-31 148.0
25 TraesCS2D01G555800 chr2A 81.490 1383 225 20 2338 3709 759100511 759099149 0.000000e+00 1107.0
26 TraesCS2D01G555800 chr2A 90.459 828 24 20 4770 5590 759098070 759097291 0.000000e+00 1040.0
27 TraesCS2D01G555800 chr2A 82.775 1045 118 23 3713 4724 759099090 759098075 0.000000e+00 876.0
28 TraesCS2D01G555800 chr2A 80.160 998 179 17 1897 2884 761027931 761028919 0.000000e+00 728.0
29 TraesCS2D01G555800 chr2A 75.629 1551 298 58 1896 3385 758753667 758755198 0.000000e+00 697.0
30 TraesCS2D01G555800 chr2A 76.760 1037 188 31 3714 4729 760918149 760917145 1.070000e-146 531.0
31 TraesCS2D01G555800 chr2A 85.176 398 59 0 2487 2884 760846420 760846023 5.210000e-110 409.0
32 TraesCS2D01G555800 chr2A 85.911 291 41 0 3392 3682 760855855 760855565 1.510000e-80 311.0
33 TraesCS2D01G555800 chr2A 84.701 268 28 7 1405 1661 20570796 20570531 7.190000e-64 255.0
34 TraesCS2D01G555800 chrUn 80.060 998 180 17 1897 2884 319844124 319845112 0.000000e+00 723.0
35 TraesCS2D01G555800 chrUn 85.911 291 41 0 3392 3682 312030346 312030636 1.510000e-80 311.0
36 TraesCS2D01G555800 chrUn 79.157 451 85 9 2006 2452 475476997 475477442 2.530000e-78 303.0
37 TraesCS2D01G555800 chrUn 82.449 245 26 7 1420 1654 361611382 361611145 1.230000e-46 198.0
38 TraesCS2D01G555800 chr5D 79.481 385 46 19 1408 1766 559934588 559934965 5.600000e-60 243.0
39 TraesCS2D01G555800 chr3D 79.275 386 48 19 1408 1766 278499316 278499696 2.010000e-59 241.0
40 TraesCS2D01G555800 chr6B 78.307 378 76 4 2923 3297 686548948 686548574 7.240000e-59 239.0
41 TraesCS2D01G555800 chr6B 77.848 158 26 4 4839 4987 157869461 157869618 7.710000e-14 89.8
42 TraesCS2D01G555800 chr3B 82.671 277 32 10 1408 1674 372189413 372189143 1.210000e-56 231.0
43 TraesCS2D01G555800 chr1D 77.895 380 48 23 1412 1766 110982173 110982541 2.640000e-48 204.0
44 TraesCS2D01G555800 chr4A 81.712 257 30 7 1408 1654 658913771 658914020 1.230000e-46 198.0
45 TraesCS2D01G555800 chr7D 82.553 235 27 9 1417 1643 45757347 45757575 1.590000e-45 195.0
46 TraesCS2D01G555800 chr1B 90.426 94 8 1 5385 5477 305153265 305153358 7.610000e-24 122.0
47 TraesCS2D01G555800 chr1B 87.324 71 3 2 5317 5386 305152931 305152996 6.010000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G555800 chr2D 629622319 629627908 5589 True 10323.000000 10323 100.000000 1 5590 1 chr2D.!!$R6 5589
1 TraesCS2D01G555800 chr2D 629480881 629481433 552 True 392.000000 392 79.643000 2329 2884 1 chr2D.!!$R4 555
2 TraesCS2D01G555800 chr2D 629995168 629996157 989 False 260.000000 265 82.738000 3392 4529 2 chr2D.!!$F1 1137
3 TraesCS2D01G555800 chr2B 772482998 772485464 2466 True 1844.000000 1844 80.505000 2166 4611 1 chr2B.!!$R3 2445
4 TraesCS2D01G555800 chr2B 772324568 772327662 3094 True 982.666667 1666 86.277000 2319 5587 3 chr2B.!!$R4 3268
5 TraesCS2D01G555800 chr2B 772536728 772546023 9295 True 845.500000 2796 92.042875 1 5064 8 chr2B.!!$R5 5063
6 TraesCS2D01G555800 chr2B 771957526 771958972 1446 False 671.000000 671 75.838000 1989 3385 1 chr2B.!!$F1 1396
7 TraesCS2D01G555800 chr2B 772596701 772597670 969 False 601.000000 601 78.084000 1912 2881 1 chr2B.!!$F2 969
8 TraesCS2D01G555800 chr2B 772601807 772602797 990 False 483.000000 483 75.917000 1896 2884 1 chr2B.!!$F3 988
9 TraesCS2D01G555800 chr2A 759097291 759100511 3220 True 1007.666667 1107 84.908000 2338 5590 3 chr2A.!!$R5 3252
10 TraesCS2D01G555800 chr2A 761027931 761028919 988 False 728.000000 728 80.160000 1897 2884 1 chr2A.!!$F2 987
11 TraesCS2D01G555800 chr2A 758753667 758755198 1531 False 697.000000 697 75.629000 1896 3385 1 chr2A.!!$F1 1489
12 TraesCS2D01G555800 chr2A 760917145 760918149 1004 True 531.000000 531 76.760000 3714 4729 1 chr2A.!!$R4 1015
13 TraesCS2D01G555800 chrUn 319844124 319845112 988 False 723.000000 723 80.060000 1897 2884 1 chrUn.!!$F2 987

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
615 623 0.106318 TACCCCTTCTCCCTCGCTAC 60.106 60.000 0.00 0.0 0.00 3.58 F
1143 3201 0.031178 GTGCTCTGGTGCTTTTGTGG 59.969 55.000 0.00 0.0 0.00 4.17 F
1302 3360 0.163146 GCGTGTGACCTAAAGTTCGC 59.837 55.000 0.00 0.0 36.06 4.70 F
1386 3450 0.179032 CCCCGCCATGTATGCTGTAA 60.179 55.000 0.00 0.0 0.00 2.41 F
1410 3474 0.322187 CTGGGGTCTGTAAAACGGGG 60.322 60.000 0.00 0.0 0.00 5.73 F
1416 3480 0.605319 TCTGTAAAACGGGGCAGCAG 60.605 55.000 0.00 0.0 0.00 4.24 F
1428 3492 0.804989 GGCAGCAGAGCACGTTATTT 59.195 50.000 0.00 0.0 35.83 1.40 F
1766 4206 0.955428 GCCCGTGCTCAGATGTCAAA 60.955 55.000 0.00 0.0 33.53 2.69 F
2660 5134 1.032794 CTATGCAGCTGGAGTACGGA 58.967 55.000 17.12 0.0 0.00 4.69 F
3709 6228 1.069049 ACTGCATGCCACAAGTTTTCC 59.931 47.619 16.68 0.0 0.00 3.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2278 4752 0.173935 CACCCACGCCGAAGTACATA 59.826 55.000 0.00 0.00 0.00 2.29 R
2279 4753 1.079405 CACCCACGCCGAAGTACAT 60.079 57.895 0.00 0.00 0.00 2.29 R
2805 5288 1.930100 GCGAGATGCTCCACAATCG 59.070 57.895 0.00 0.00 41.80 3.34 R
2997 5504 1.981256 TGAAAGAAGACCCTTGGTGC 58.019 50.000 0.00 0.00 35.25 5.01 R
3146 5656 4.330894 TGCAATTAGACTTCGCATCTCTTG 59.669 41.667 0.00 0.00 0.00 3.02 R
3265 5775 4.738252 TGCAATACTAATCGTGTAAGAGCG 59.262 41.667 0.00 0.00 0.00 5.03 R
3398 5917 6.319141 CTGGCTTACAGTTTTCTTAGCTTT 57.681 37.500 0.00 0.00 42.42 3.51 R
3614 6133 2.845363 TGCTTCAAGATGACTGCTGA 57.155 45.000 0.00 0.00 30.62 4.26 R
3971 8442 0.442699 CGAACGCTTGAGTTTAGGGC 59.557 55.000 0.00 0.00 34.00 5.19 R
5199 9836 0.392998 CCCCCGCCTGTCATATATGC 60.393 60.000 7.92 4.27 0.00 3.14 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 47 8.780846 TTCCAGTTGATTCTATTTTAGCGTAA 57.219 30.769 0.00 0.00 0.00 3.18
136 140 4.409718 TCTTACAAGCACCTACAACACA 57.590 40.909 0.00 0.00 0.00 3.72
150 154 5.066505 CCTACAACACATTAAAGATGGAGCC 59.933 44.000 0.00 0.00 0.00 4.70
169 173 5.940470 GGAGCCCTGACAAATATAATGTAGG 59.060 44.000 0.00 0.00 0.00 3.18
193 197 8.836959 GGGTCAAAAACGCTTTTCTATTATAG 57.163 34.615 0.00 0.00 37.81 1.31
304 309 3.875510 GAGCCAGGCCACCAAAGCT 62.876 63.158 8.22 2.83 0.00 3.74
342 350 0.321122 CTTGCCGAGGTCTTCTTGCT 60.321 55.000 0.00 0.00 0.00 3.91
352 360 2.489722 GGTCTTCTTGCTTCAATCACCC 59.510 50.000 0.00 0.00 0.00 4.61
358 366 3.826157 TCTTGCTTCAATCACCCGAAAAT 59.174 39.130 0.00 0.00 0.00 1.82
359 367 5.007034 TCTTGCTTCAATCACCCGAAAATA 58.993 37.500 0.00 0.00 0.00 1.40
360 368 5.475220 TCTTGCTTCAATCACCCGAAAATAA 59.525 36.000 0.00 0.00 0.00 1.40
361 369 5.713792 TGCTTCAATCACCCGAAAATAAA 57.286 34.783 0.00 0.00 0.00 1.40
602 610 0.401738 CCCGCATTGATGATACCCCT 59.598 55.000 0.00 0.00 0.00 4.79
611 619 1.896465 GATGATACCCCTTCTCCCTCG 59.104 57.143 0.00 0.00 0.00 4.63
613 621 0.470268 GATACCCCTTCTCCCTCGCT 60.470 60.000 0.00 0.00 0.00 4.93
614 622 0.858369 ATACCCCTTCTCCCTCGCTA 59.142 55.000 0.00 0.00 0.00 4.26
615 623 0.106318 TACCCCTTCTCCCTCGCTAC 60.106 60.000 0.00 0.00 0.00 3.58
616 624 1.075896 CCCCTTCTCCCTCGCTACT 60.076 63.158 0.00 0.00 0.00 2.57
629 639 0.236187 CGCTACTCCCTCGATCTTCG 59.764 60.000 0.00 0.00 42.10 3.79
642 652 3.251245 TCGATCTTCGATCTTGAGCTACC 59.749 47.826 0.00 0.00 44.82 3.18
652 662 4.096003 GAGCTACCGGGCAAGCCA 62.096 66.667 18.67 0.00 39.64 4.75
670 688 4.742201 CACGAGCTCCACCACCGG 62.742 72.222 8.47 0.00 0.00 5.28
671 689 4.988716 ACGAGCTCCACCACCGGA 62.989 66.667 9.46 0.00 0.00 5.14
672 690 4.436998 CGAGCTCCACCACCGGAC 62.437 72.222 9.46 0.00 0.00 4.79
751 1026 3.249320 CGCGTAGAAGCACCAGTAGTATA 59.751 47.826 0.00 0.00 36.85 1.47
752 1027 4.535116 GCGTAGAAGCACCAGTAGTATAC 58.465 47.826 0.00 0.00 38.37 1.47
753 1028 4.036027 GCGTAGAAGCACCAGTAGTATACA 59.964 45.833 5.50 0.00 39.70 2.29
755 1030 6.372185 CGTAGAAGCACCAGTAGTATACATC 58.628 44.000 5.50 0.00 46.26 3.06
756 1031 6.205076 CGTAGAAGCACCAGTAGTATACATCT 59.795 42.308 5.50 0.00 46.26 2.90
757 1032 7.255173 CGTAGAAGCACCAGTAGTATACATCTT 60.255 40.741 5.50 0.00 46.26 2.40
758 1033 7.045126 AGAAGCACCAGTAGTATACATCTTC 57.955 40.000 5.50 5.74 46.26 2.87
776 1051 1.135960 TCCCCGCATTGATGATACCA 58.864 50.000 0.00 0.00 0.00 3.25
829 1104 0.967887 AGCCAGACGAGCTCTAGCAA 60.968 55.000 12.85 0.00 45.16 3.91
852 1162 1.798813 CGAGGAGAAACCAGAAAACCG 59.201 52.381 0.00 0.00 42.04 4.44
888 2515 3.882888 CCACCACCATTATCATACCACAC 59.117 47.826 0.00 0.00 0.00 3.82
907 2534 3.423154 GAGGAAACTGCCGTGCCG 61.423 66.667 0.00 0.00 44.43 5.69
910 2537 4.090057 GAAACTGCCGTGCCGCTC 62.090 66.667 0.00 0.00 0.00 5.03
949 2576 2.999331 ACCATACCACGGAGGAATTTG 58.001 47.619 2.94 0.00 41.22 2.32
963 2590 5.326200 AGGAATTTGTCTACTGGAGTACG 57.674 43.478 0.00 0.00 0.00 3.67
966 2593 0.806868 TTGTCTACTGGAGTACGGCG 59.193 55.000 4.80 4.80 0.00 6.46
969 2596 0.463295 TCTACTGGAGTACGGCGGAG 60.463 60.000 13.24 0.00 0.00 4.63
988 2615 1.617850 AGCATTTGGAAACCGCATTGA 59.382 42.857 0.00 0.00 0.00 2.57
991 2618 2.810439 TTTGGAAACCGCATTGAAGG 57.190 45.000 0.00 0.00 0.00 3.46
1019 2646 1.277580 ATGGGAGGAGAGTGGCTTGG 61.278 60.000 0.00 0.00 0.00 3.61
1029 2656 4.441695 TGGCTTGGCGCTCTCTCG 62.442 66.667 7.64 0.00 39.13 4.04
1031 2658 4.135153 GCTTGGCGCTCTCTCGGA 62.135 66.667 7.64 0.00 35.14 4.55
1032 2659 2.103934 CTTGGCGCTCTCTCGGAG 59.896 66.667 7.64 0.00 44.49 4.63
1033 2660 3.423162 CTTGGCGCTCTCTCGGAGG 62.423 68.421 7.64 0.00 42.08 4.30
1034 2661 3.938637 TTGGCGCTCTCTCGGAGGA 62.939 63.158 7.64 0.85 42.08 3.71
1035 2662 3.591835 GGCGCTCTCTCGGAGGAG 61.592 72.222 7.64 15.15 42.08 3.69
1036 2663 3.591835 GCGCTCTCTCGGAGGAGG 61.592 72.222 18.79 12.66 42.08 4.30
1038 2665 1.891919 CGCTCTCTCGGAGGAGGAG 60.892 68.421 18.79 16.62 42.08 3.69
1039 2666 1.528309 GCTCTCTCGGAGGAGGAGG 60.528 68.421 18.79 6.93 42.08 4.30
1040 2667 1.990160 GCTCTCTCGGAGGAGGAGGA 61.990 65.000 18.79 4.57 42.08 3.71
1041 2668 0.108585 CTCTCTCGGAGGAGGAGGAG 59.891 65.000 4.96 0.00 40.85 3.69
1042 2669 1.528309 CTCTCGGAGGAGGAGGAGC 60.528 68.421 4.96 0.00 40.85 4.70
1043 2670 1.994885 CTCTCGGAGGAGGAGGAGCT 61.995 65.000 4.96 0.00 40.85 4.09
1044 2671 1.076339 CTCGGAGGAGGAGGAGCTT 60.076 63.158 0.00 0.00 36.61 3.74
1045 2672 1.076632 TCGGAGGAGGAGGAGCTTC 60.077 63.158 0.00 0.00 0.00 3.86
1046 2673 2.485795 CGGAGGAGGAGGAGCTTCG 61.486 68.421 0.00 0.00 0.00 3.79
1047 2674 1.076632 GGAGGAGGAGGAGCTTCGA 60.077 63.158 0.00 0.00 0.00 3.71
1049 2676 1.720694 GAGGAGGAGGAGCTTCGACG 61.721 65.000 0.00 0.00 0.00 5.12
1052 2679 4.856607 GGAGGAGCTTCGACGGCG 62.857 72.222 2.87 2.87 39.35 6.46
1053 2680 4.856607 GAGGAGCTTCGACGGCGG 62.857 72.222 12.58 0.00 38.28 6.13
1059 2686 4.735132 CTTCGACGGCGGCCAGAA 62.735 66.667 20.71 18.40 38.28 3.02
1067 3125 2.586792 GCGGCCAGAAGTGAGGAT 59.413 61.111 2.24 0.00 0.00 3.24
1090 3148 5.720202 TCATTAACAAGTATGCAGTCGTCT 58.280 37.500 0.00 0.00 0.00 4.18
1092 3150 6.649141 TCATTAACAAGTATGCAGTCGTCTTT 59.351 34.615 0.00 0.00 0.00 2.52
1102 3160 2.096417 GCAGTCGTCTTTGCGTACATTT 60.096 45.455 0.00 0.00 0.00 2.32
1129 3187 2.851798 CTGAAAGGCCAGAGTGCTC 58.148 57.895 5.01 0.00 36.29 4.26
1130 3188 0.324285 CTGAAAGGCCAGAGTGCTCT 59.676 55.000 5.01 0.00 41.37 4.09
1140 3198 1.602311 AGAGTGCTCTGGTGCTTTTG 58.398 50.000 0.28 0.00 38.75 2.44
1141 3199 1.133976 AGAGTGCTCTGGTGCTTTTGT 60.134 47.619 0.28 0.00 38.75 2.83
1142 3200 1.002033 GAGTGCTCTGGTGCTTTTGTG 60.002 52.381 0.00 0.00 0.00 3.33
1143 3201 0.031178 GTGCTCTGGTGCTTTTGTGG 59.969 55.000 0.00 0.00 0.00 4.17
1144 3202 1.108727 TGCTCTGGTGCTTTTGTGGG 61.109 55.000 0.00 0.00 0.00 4.61
1145 3203 1.662044 CTCTGGTGCTTTTGTGGGC 59.338 57.895 0.00 0.00 0.00 5.36
1146 3204 1.076412 TCTGGTGCTTTTGTGGGCA 60.076 52.632 0.00 0.00 36.01 5.36
1147 3205 0.685785 TCTGGTGCTTTTGTGGGCAA 60.686 50.000 0.00 0.00 40.26 4.52
1176 3234 3.181967 CTTGGCGGCTTCGTCTCG 61.182 66.667 11.43 0.00 39.55 4.04
1181 3239 3.111939 CGGCTTCGTCTCGGATCT 58.888 61.111 0.00 0.00 0.00 2.75
1187 3245 1.601903 CTTCGTCTCGGATCTGAGGAG 59.398 57.143 27.57 21.34 36.61 3.69
1189 3247 1.098129 CGTCTCGGATCTGAGGAGCA 61.098 60.000 27.57 8.93 36.61 4.26
1218 3276 2.323059 CACTATCTGACCATCATCGCG 58.677 52.381 0.00 0.00 0.00 5.87
1222 3280 0.525455 TCTGACCATCATCGCGTTCG 60.525 55.000 5.77 0.00 0.00 3.95
1247 3305 4.641645 TGCCGGGTGAGTGCTTGG 62.642 66.667 2.18 0.00 0.00 3.61
1271 3329 5.845391 ATCCAGCTCTCTTCTTACTGTAC 57.155 43.478 0.00 0.00 0.00 2.90
1272 3330 4.663334 TCCAGCTCTCTTCTTACTGTACA 58.337 43.478 0.00 0.00 0.00 2.90
1273 3331 5.265191 TCCAGCTCTCTTCTTACTGTACAT 58.735 41.667 0.00 0.00 0.00 2.29
1274 3332 5.126222 TCCAGCTCTCTTCTTACTGTACATG 59.874 44.000 0.00 0.00 0.00 3.21
1292 3350 0.871722 TGCATGTTAAGCGTGTGACC 59.128 50.000 0.00 0.00 36.50 4.02
1297 3355 4.669197 GCATGTTAAGCGTGTGACCTAAAG 60.669 45.833 0.00 0.00 36.50 1.85
1299 3357 4.444536 TGTTAAGCGTGTGACCTAAAGTT 58.555 39.130 0.00 0.00 0.00 2.66
1300 3358 4.508861 TGTTAAGCGTGTGACCTAAAGTTC 59.491 41.667 0.00 0.00 0.00 3.01
1301 3359 1.779569 AGCGTGTGACCTAAAGTTCG 58.220 50.000 0.00 0.00 0.00 3.95
1302 3360 0.163146 GCGTGTGACCTAAAGTTCGC 59.837 55.000 0.00 0.00 36.06 4.70
1313 3377 5.420409 ACCTAAAGTTCGCCTCTTTGATAG 58.580 41.667 8.68 0.00 36.65 2.08
1362 3426 9.770097 TCTTGTATATCTTTCATTCATCTGGTC 57.230 33.333 0.00 0.00 0.00 4.02
1363 3427 9.775854 CTTGTATATCTTTCATTCATCTGGTCT 57.224 33.333 0.00 0.00 0.00 3.85
1364 3428 9.551734 TTGTATATCTTTCATTCATCTGGTCTG 57.448 33.333 0.00 0.00 0.00 3.51
1365 3429 7.658982 TGTATATCTTTCATTCATCTGGTCTGC 59.341 37.037 0.00 0.00 0.00 4.26
1366 3430 3.614092 TCTTTCATTCATCTGGTCTGCC 58.386 45.455 0.00 0.00 0.00 4.85
1367 3431 2.425143 TTCATTCATCTGGTCTGCCC 57.575 50.000 0.00 0.00 0.00 5.36
1368 3432 0.548031 TCATTCATCTGGTCTGCCCC 59.452 55.000 0.00 0.00 0.00 5.80
1369 3433 0.466922 CATTCATCTGGTCTGCCCCC 60.467 60.000 0.00 0.00 0.00 5.40
1383 3447 2.595463 CCCCCGCCATGTATGCTG 60.595 66.667 0.00 0.00 0.00 4.41
1384 3448 2.192979 CCCCGCCATGTATGCTGT 59.807 61.111 0.00 0.00 0.00 4.40
1385 3449 1.449782 CCCCGCCATGTATGCTGTA 59.550 57.895 0.00 0.00 0.00 2.74
1386 3450 0.179032 CCCCGCCATGTATGCTGTAA 60.179 55.000 0.00 0.00 0.00 2.41
1387 3451 0.944386 CCCGCCATGTATGCTGTAAC 59.056 55.000 0.00 0.00 0.00 2.50
1388 3452 1.662517 CCGCCATGTATGCTGTAACA 58.337 50.000 0.00 0.00 0.00 2.41
1389 3453 1.330521 CCGCCATGTATGCTGTAACAC 59.669 52.381 0.00 0.00 0.00 3.32
1390 3454 2.279741 CGCCATGTATGCTGTAACACT 58.720 47.619 0.00 0.00 0.00 3.55
1391 3455 2.285220 CGCCATGTATGCTGTAACACTC 59.715 50.000 0.00 0.00 0.00 3.51
1392 3456 3.535561 GCCATGTATGCTGTAACACTCT 58.464 45.455 0.00 0.00 0.00 3.24
1393 3457 3.310774 GCCATGTATGCTGTAACACTCTG 59.689 47.826 0.00 0.00 0.00 3.35
1394 3458 3.873361 CCATGTATGCTGTAACACTCTGG 59.127 47.826 0.00 0.00 0.00 3.86
1395 3459 3.610040 TGTATGCTGTAACACTCTGGG 57.390 47.619 0.00 0.00 0.00 4.45
1396 3460 2.236146 TGTATGCTGTAACACTCTGGGG 59.764 50.000 0.00 0.00 0.00 4.96
1397 3461 1.362224 ATGCTGTAACACTCTGGGGT 58.638 50.000 0.00 0.00 0.00 4.95
1398 3462 0.685097 TGCTGTAACACTCTGGGGTC 59.315 55.000 0.00 0.00 0.00 4.46
1399 3463 0.977395 GCTGTAACACTCTGGGGTCT 59.023 55.000 0.00 0.00 0.00 3.85
1400 3464 1.338200 GCTGTAACACTCTGGGGTCTG 60.338 57.143 0.00 0.00 0.00 3.51
1401 3465 1.971357 CTGTAACACTCTGGGGTCTGT 59.029 52.381 0.00 0.00 0.00 3.41
1402 3466 3.162666 CTGTAACACTCTGGGGTCTGTA 58.837 50.000 0.00 0.00 0.00 2.74
1403 3467 3.576982 CTGTAACACTCTGGGGTCTGTAA 59.423 47.826 0.00 0.00 0.00 2.41
1404 3468 3.968649 TGTAACACTCTGGGGTCTGTAAA 59.031 43.478 0.00 0.00 0.00 2.01
1405 3469 4.409574 TGTAACACTCTGGGGTCTGTAAAA 59.590 41.667 0.00 0.00 0.00 1.52
1406 3470 3.487120 ACACTCTGGGGTCTGTAAAAC 57.513 47.619 0.00 0.00 0.00 2.43
1407 3471 2.224209 ACACTCTGGGGTCTGTAAAACG 60.224 50.000 0.00 0.00 0.00 3.60
1408 3472 1.346722 ACTCTGGGGTCTGTAAAACGG 59.653 52.381 0.00 0.00 0.00 4.44
1409 3473 0.688487 TCTGGGGTCTGTAAAACGGG 59.312 55.000 0.00 0.00 0.00 5.28
1410 3474 0.322187 CTGGGGTCTGTAAAACGGGG 60.322 60.000 0.00 0.00 0.00 5.73
1411 3475 1.676635 GGGGTCTGTAAAACGGGGC 60.677 63.158 0.00 0.00 0.00 5.80
1412 3476 1.073548 GGGTCTGTAAAACGGGGCA 59.926 57.895 0.00 0.00 0.00 5.36
1413 3477 0.958876 GGGTCTGTAAAACGGGGCAG 60.959 60.000 0.00 0.00 0.00 4.85
1414 3478 1.583495 GGTCTGTAAAACGGGGCAGC 61.583 60.000 0.00 0.00 0.00 5.25
1415 3479 0.887387 GTCTGTAAAACGGGGCAGCA 60.887 55.000 0.00 0.00 0.00 4.41
1416 3480 0.605319 TCTGTAAAACGGGGCAGCAG 60.605 55.000 0.00 0.00 0.00 4.24
1417 3481 0.605319 CTGTAAAACGGGGCAGCAGA 60.605 55.000 0.00 0.00 0.00 4.26
1418 3482 0.605319 TGTAAAACGGGGCAGCAGAG 60.605 55.000 0.00 0.00 0.00 3.35
1419 3483 1.674322 TAAAACGGGGCAGCAGAGC 60.674 57.895 0.00 0.00 0.00 4.09
1420 3484 2.404566 TAAAACGGGGCAGCAGAGCA 62.405 55.000 0.00 0.00 35.83 4.26
1425 3489 2.047274 GGGCAGCAGAGCACGTTA 60.047 61.111 0.00 0.00 35.83 3.18
1426 3490 1.450312 GGGCAGCAGAGCACGTTAT 60.450 57.895 0.00 0.00 35.83 1.89
1427 3491 1.026718 GGGCAGCAGAGCACGTTATT 61.027 55.000 0.00 0.00 35.83 1.40
1428 3492 0.804989 GGCAGCAGAGCACGTTATTT 59.195 50.000 0.00 0.00 35.83 1.40
1429 3493 1.200020 GGCAGCAGAGCACGTTATTTT 59.800 47.619 0.00 0.00 35.83 1.82
1430 3494 2.418628 GGCAGCAGAGCACGTTATTTTA 59.581 45.455 0.00 0.00 35.83 1.52
1431 3495 3.119990 GGCAGCAGAGCACGTTATTTTAA 60.120 43.478 0.00 0.00 35.83 1.52
1432 3496 4.472286 GCAGCAGAGCACGTTATTTTAAA 58.528 39.130 0.00 0.00 0.00 1.52
1433 3497 4.320953 GCAGCAGAGCACGTTATTTTAAAC 59.679 41.667 0.00 0.00 0.00 2.01
1434 3498 5.689819 CAGCAGAGCACGTTATTTTAAACT 58.310 37.500 0.00 0.00 0.00 2.66
1435 3499 5.565259 CAGCAGAGCACGTTATTTTAAACTG 59.435 40.000 0.00 0.00 0.00 3.16
1436 3500 4.320953 GCAGAGCACGTTATTTTAAACTGC 59.679 41.667 0.00 0.00 39.66 4.40
1437 3501 5.689819 CAGAGCACGTTATTTTAAACTGCT 58.310 37.500 11.02 11.02 41.85 4.24
1438 3502 6.619874 GCAGAGCACGTTATTTTAAACTGCTA 60.620 38.462 0.00 0.00 40.58 3.49
1439 3503 7.295201 CAGAGCACGTTATTTTAAACTGCTAA 58.705 34.615 11.13 0.00 40.58 3.09
1440 3504 7.801315 CAGAGCACGTTATTTTAAACTGCTAAA 59.199 33.333 11.13 0.00 40.58 1.85
1533 3968 8.385898 AGTACCTGTGAAATTTCGTTCAATAA 57.614 30.769 13.34 0.00 39.18 1.40
1534 3969 9.010029 AGTACCTGTGAAATTTCGTTCAATAAT 57.990 29.630 13.34 5.33 39.18 1.28
1556 3991 1.393539 CGTTGTACTATGTGCTGCACC 59.606 52.381 28.17 13.14 32.73 5.01
1558 3993 2.811431 GTTGTACTATGTGCTGCACCAA 59.189 45.455 28.17 20.01 32.73 3.67
1612 4047 6.382570 AGCCCCTAATTTGCATGTATTTTGTA 59.617 34.615 0.00 0.00 0.00 2.41
1613 4048 7.071071 AGCCCCTAATTTGCATGTATTTTGTAT 59.929 33.333 0.00 0.00 0.00 2.29
1640 4075 2.138596 ACCTTTCAAATGCAAGCACG 57.861 45.000 0.00 0.00 0.00 5.34
1660 4095 5.276348 GCACGTATATTGCTGAAATTTTGGC 60.276 40.000 8.69 8.69 37.00 4.52
1661 4096 5.804473 CACGTATATTGCTGAAATTTTGGCA 59.196 36.000 12.76 12.76 0.00 4.92
1686 4121 3.552604 ATACGTGCTCGCAAACAAAAT 57.447 38.095 8.29 0.00 41.18 1.82
1687 4122 2.202295 ACGTGCTCGCAAACAAAATT 57.798 40.000 8.29 0.00 41.18 1.82
1688 4123 2.535331 ACGTGCTCGCAAACAAAATTT 58.465 38.095 8.29 0.00 41.18 1.82
1690 4125 3.241932 ACGTGCTCGCAAACAAAATTTTG 60.242 39.130 25.73 25.73 41.20 2.44
1691 4126 3.000277 CGTGCTCGCAAACAAAATTTTGA 60.000 39.130 32.20 11.80 40.55 2.69
1719 4158 8.928270 TTTTCAAGCCGTAAAAATCTGTTTTA 57.072 26.923 0.00 0.00 36.55 1.52
1765 4205 1.375908 GCCCGTGCTCAGATGTCAA 60.376 57.895 0.00 0.00 33.53 3.18
1766 4206 0.955428 GCCCGTGCTCAGATGTCAAA 60.955 55.000 0.00 0.00 33.53 2.69
1767 4207 1.742761 CCCGTGCTCAGATGTCAAAT 58.257 50.000 0.00 0.00 0.00 2.32
1768 4208 2.905075 CCCGTGCTCAGATGTCAAATA 58.095 47.619 0.00 0.00 0.00 1.40
1769 4209 2.868583 CCCGTGCTCAGATGTCAAATAG 59.131 50.000 0.00 0.00 0.00 1.73
1770 4210 2.286294 CCGTGCTCAGATGTCAAATAGC 59.714 50.000 0.00 0.00 0.00 2.97
1771 4211 2.286294 CGTGCTCAGATGTCAAATAGCC 59.714 50.000 0.00 0.00 0.00 3.93
1772 4212 3.273434 GTGCTCAGATGTCAAATAGCCA 58.727 45.455 0.00 0.00 0.00 4.75
1773 4213 3.881688 GTGCTCAGATGTCAAATAGCCAT 59.118 43.478 0.00 0.00 0.00 4.40
1774 4214 5.059161 GTGCTCAGATGTCAAATAGCCATA 58.941 41.667 0.00 0.00 0.00 2.74
1775 4215 5.528690 GTGCTCAGATGTCAAATAGCCATAA 59.471 40.000 0.00 0.00 0.00 1.90
1776 4216 6.206243 GTGCTCAGATGTCAAATAGCCATAAT 59.794 38.462 0.00 0.00 0.00 1.28
1777 4217 6.206048 TGCTCAGATGTCAAATAGCCATAATG 59.794 38.462 0.00 0.00 0.00 1.90
1778 4218 6.206243 GCTCAGATGTCAAATAGCCATAATGT 59.794 38.462 0.00 0.00 0.00 2.71
1779 4219 7.500720 TCAGATGTCAAATAGCCATAATGTG 57.499 36.000 0.00 0.00 0.00 3.21
1780 4220 6.016860 TCAGATGTCAAATAGCCATAATGTGC 60.017 38.462 0.00 0.00 0.00 4.57
1781 4221 4.916983 TGTCAAATAGCCATAATGTGCC 57.083 40.909 0.00 0.00 0.00 5.01
1782 4222 3.636300 TGTCAAATAGCCATAATGTGCCC 59.364 43.478 0.00 0.00 0.00 5.36
1783 4223 2.884012 TCAAATAGCCATAATGTGCCCG 59.116 45.455 0.00 0.00 0.00 6.13
1784 4224 1.909700 AATAGCCATAATGTGCCCGG 58.090 50.000 0.00 0.00 0.00 5.73
1804 4244 6.351117 GCCCGGACTTTATACATAGAGCTAAT 60.351 42.308 0.73 0.00 0.00 1.73
1806 4246 7.036220 CCGGACTTTATACATAGAGCTAATGG 58.964 42.308 0.00 0.00 0.00 3.16
1817 4257 2.763651 GCTAATGGCGAACGTCCTT 58.236 52.632 0.00 0.00 0.00 3.36
1858 4298 6.751157 TCTTTGTCGTCATAAAGAGTAACCA 58.249 36.000 0.00 0.00 37.83 3.67
1859 4299 7.211573 TCTTTGTCGTCATAAAGAGTAACCAA 58.788 34.615 0.00 0.00 37.83 3.67
1860 4300 7.711772 TCTTTGTCGTCATAAAGAGTAACCAAA 59.288 33.333 0.00 0.00 37.83 3.28
1861 4301 7.789273 TTGTCGTCATAAAGAGTAACCAAAA 57.211 32.000 0.00 0.00 0.00 2.44
1862 4302 7.416154 TGTCGTCATAAAGAGTAACCAAAAG 57.584 36.000 0.00 0.00 0.00 2.27
1863 4303 6.987992 TGTCGTCATAAAGAGTAACCAAAAGT 59.012 34.615 0.00 0.00 0.00 2.66
1864 4304 8.143193 TGTCGTCATAAAGAGTAACCAAAAGTA 58.857 33.333 0.00 0.00 0.00 2.24
1865 4305 8.645487 GTCGTCATAAAGAGTAACCAAAAGTAG 58.355 37.037 0.00 0.00 0.00 2.57
1866 4306 7.330208 TCGTCATAAAGAGTAACCAAAAGTAGC 59.670 37.037 0.00 0.00 0.00 3.58
1867 4307 7.331193 CGTCATAAAGAGTAACCAAAAGTAGCT 59.669 37.037 0.00 0.00 0.00 3.32
1868 4308 8.657729 GTCATAAAGAGTAACCAAAAGTAGCTC 58.342 37.037 0.00 0.00 32.53 4.09
1869 4309 8.594550 TCATAAAGAGTAACCAAAAGTAGCTCT 58.405 33.333 0.00 0.00 39.77 4.09
1870 4310 9.220767 CATAAAGAGTAACCAAAAGTAGCTCTT 57.779 33.333 0.00 0.00 44.62 2.85
1948 4388 1.136891 GGCAGTTAACATTGGCCCATC 59.863 52.381 8.61 0.00 38.70 3.51
1978 4418 9.409949 CGCTTTTCTAAAATAGATGTAACTTCG 57.590 33.333 0.00 0.00 34.22 3.79
2061 4513 1.461127 GACATCGTGTCCTGCTTTGAC 59.539 52.381 6.82 0.00 41.37 3.18
2277 4751 3.476552 TGATCGTGATATTTTCCCCAGC 58.523 45.455 0.00 0.00 0.00 4.85
2278 4752 3.136443 TGATCGTGATATTTTCCCCAGCT 59.864 43.478 0.00 0.00 0.00 4.24
2279 4753 4.346709 TGATCGTGATATTTTCCCCAGCTA 59.653 41.667 0.00 0.00 0.00 3.32
2323 4797 4.463891 CCAATTATTTGTTCTGGCCTGTCT 59.536 41.667 3.32 0.00 0.00 3.41
2350 4824 3.834610 TCGTCTAGCAAAGCAAGACTAC 58.165 45.455 0.00 0.00 0.00 2.73
2517 4991 1.228552 AACGCCATGGTTTCAGCCT 60.229 52.632 14.67 0.00 0.00 4.58
2529 5003 4.202461 TGGTTTCAGCCTCAATGTACTTCT 60.202 41.667 0.00 0.00 0.00 2.85
2655 5129 2.482664 CGAATGACTATGCAGCTGGAGT 60.483 50.000 17.12 7.95 0.00 3.85
2660 5134 1.032794 CTATGCAGCTGGAGTACGGA 58.967 55.000 17.12 0.00 0.00 4.69
2682 5156 5.349817 GGATACTAACCATGCTGATTGATCG 59.650 44.000 0.00 0.00 0.00 3.69
2719 5202 3.701542 AGATAAGACGGCTGTTGATCAGA 59.298 43.478 0.00 0.00 46.27 3.27
2805 5288 2.806856 CGAGATGGCTTGCAGCGAC 61.807 63.158 0.00 0.00 43.62 5.19
2889 5378 4.345257 TGTATCCTCCCTCTTTGATGCTAC 59.655 45.833 0.00 0.00 0.00 3.58
2997 5504 7.442062 TGGACATAACTGCACAATGATATACAG 59.558 37.037 5.43 0.00 0.00 2.74
3265 5775 2.479901 GCTACTGACGGGAGCTTTAGAC 60.480 54.545 11.59 0.00 33.28 2.59
3349 5868 3.193267 GGGCACTGCACATATTTCTTTCA 59.807 43.478 2.82 0.00 0.00 2.69
3398 5917 6.618287 AACATGAGAAGAACGTGATGAAAA 57.382 33.333 0.00 0.00 0.00 2.29
3614 6133 2.760374 GCATTGGCTCTCGTATTAGCT 58.240 47.619 0.00 0.00 38.80 3.32
3709 6228 1.069049 ACTGCATGCCACAAGTTTTCC 59.931 47.619 16.68 0.00 0.00 3.13
3710 6229 1.342174 CTGCATGCCACAAGTTTTCCT 59.658 47.619 16.68 0.00 0.00 3.36
3711 6230 2.557924 CTGCATGCCACAAGTTTTCCTA 59.442 45.455 16.68 0.00 0.00 2.94
3852 8284 5.625150 AGAAAGACAAGAGGTTGCTGTTAT 58.375 37.500 0.00 0.00 37.14 1.89
3916 8380 5.067954 AGGGTGTATTTGACCAGTTACAAC 58.932 41.667 0.00 0.00 34.89 3.32
3986 8457 1.207329 AGGTAGCCCTAAACTCAAGCG 59.793 52.381 0.00 0.00 40.19 4.68
3988 8459 2.614734 GGTAGCCCTAAACTCAAGCGTT 60.615 50.000 0.00 0.00 0.00 4.84
4139 8737 3.487372 CATCAAGGACAGGATGATGCAT 58.513 45.455 0.00 0.00 42.60 3.96
4205 8803 7.284034 ACCAGTATTAATCTTGCAGGAATCTTG 59.716 37.037 1.33 0.00 0.00 3.02
4229 8827 0.102300 CGCAGACACCATCGGATACA 59.898 55.000 0.00 0.00 0.00 2.29
4289 8887 0.178987 AAAACATGTACGCCACCCCA 60.179 50.000 0.00 0.00 0.00 4.96
4590 9191 5.128171 TCTGTACCAATACCACTACCATGAC 59.872 44.000 0.00 0.00 0.00 3.06
4866 9486 0.319555 GCCAGTGTACGAGTTCAGCA 60.320 55.000 0.00 0.00 0.00 4.41
4892 9512 1.741770 GCCAACTACTGTCCTGCCG 60.742 63.158 0.00 0.00 0.00 5.69
4897 9517 0.537188 ACTACTGTCCTGCCGAATGG 59.463 55.000 0.00 0.00 38.77 3.16
5008 9633 2.353011 CCTGCCAATGTTGAATGGTCAC 60.353 50.000 0.00 0.00 39.00 3.67
5024 9652 8.474025 TGAATGGTCACTTTTATCTTGTTGTTT 58.526 29.630 0.00 0.00 0.00 2.83
5025 9653 8.647143 AATGGTCACTTTTATCTTGTTGTTTG 57.353 30.769 0.00 0.00 0.00 2.93
5027 9655 7.254852 TGGTCACTTTTATCTTGTTGTTTGTC 58.745 34.615 0.00 0.00 0.00 3.18
5036 9664 3.066621 TCTTGTTGTTTGTCAGTCCATGC 59.933 43.478 0.00 0.00 0.00 4.06
5149 9785 2.551504 GGTTATCTTGTTGTCCCACGGT 60.552 50.000 0.00 0.00 0.00 4.83
5158 9794 2.603473 TCCCACGGTGCAGTAGCT 60.603 61.111 1.68 0.00 42.74 3.32
5199 9836 4.083003 TGAGCAGTAAACCTTTTAATGCCG 60.083 41.667 21.20 0.00 44.23 5.69
5206 9843 8.296713 CAGTAAACCTTTTAATGCCGCATATAT 58.703 33.333 6.22 0.00 0.00 0.86
5272 9909 5.313712 TCAGGTTCACCAGAGTAAAATTCC 58.686 41.667 0.00 0.00 38.89 3.01
5308 9945 2.496470 CTCACCCTACCTTCACCTGTAC 59.504 54.545 0.00 0.00 0.00 2.90
5348 9985 3.832490 TCCTCTGTTTCTAGCTTAGCACA 59.168 43.478 7.07 0.20 0.00 4.57
5390 10027 3.881952 TTCCGTGCAGCGCTGACAT 62.882 57.895 40.21 0.00 39.71 3.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 5.508200 TCAACTGGAAAAAGCGTATTTGT 57.492 34.783 0.00 0.00 0.00 2.83
12 13 6.575162 AATAGAATCAACTGGAAAAAGCGT 57.425 33.333 0.00 0.00 0.00 5.07
136 140 4.591321 TTGTCAGGGCTCCATCTTTAAT 57.409 40.909 0.00 0.00 0.00 1.40
150 154 8.746052 TTTGACCCTACATTATATTTGTCAGG 57.254 34.615 0.00 1.43 33.54 3.86
169 173 8.671028 TCCTATAATAGAAAAGCGTTTTTGACC 58.329 33.333 15.01 0.80 36.66 4.02
178 182 7.869016 TCATTCGTCCTATAATAGAAAAGCG 57.131 36.000 0.00 0.00 0.00 4.68
193 197 8.718734 AGTTATTCAAAACTACTTCATTCGTCC 58.281 33.333 0.00 0.00 37.93 4.79
237 242 6.041979 GGTCGGGGTATTAGTTATTCTAACCA 59.958 42.308 0.00 0.00 40.80 3.67
361 369 3.883489 GCAGTAGACCTCACCTTGTTTTT 59.117 43.478 0.00 0.00 0.00 1.94
574 582 4.371624 TCATCAATGCGGGGAAGATATT 57.628 40.909 0.00 0.00 0.00 1.28
602 610 0.106619 GAGGGAGTAGCGAGGGAGAA 60.107 60.000 0.00 0.00 0.00 2.87
611 619 1.595466 TCGAAGATCGAGGGAGTAGC 58.405 55.000 0.00 0.00 44.82 3.58
629 639 0.178068 TTGCCCGGTAGCTCAAGATC 59.822 55.000 0.00 0.00 0.00 2.75
637 647 4.715523 TGTGGCTTGCCCGGTAGC 62.716 66.667 9.35 10.95 35.87 3.58
652 662 3.991051 CGGTGGTGGAGCTCGTGT 61.991 66.667 7.83 0.00 0.00 4.49
670 688 1.517257 CTCGGTGCATGAGTCCGTC 60.517 63.158 18.09 0.00 43.94 4.79
671 689 2.573869 CTCGGTGCATGAGTCCGT 59.426 61.111 18.09 0.00 43.94 4.69
672 690 2.887568 GCTCGGTGCATGAGTCCG 60.888 66.667 17.15 12.49 44.76 4.79
674 692 3.558411 GCGCTCGGTGCATGAGTC 61.558 66.667 17.15 10.37 43.06 3.36
675 693 4.377708 TGCGCTCGGTGCATGAGT 62.378 61.111 9.73 0.00 44.36 3.41
689 961 0.179140 GCAATAATGGTGGTGGTGCG 60.179 55.000 0.00 0.00 0.00 5.34
751 1026 1.212688 TCATCAATGCGGGGAAGATGT 59.787 47.619 0.00 0.00 37.80 3.06
752 1027 1.971481 TCATCAATGCGGGGAAGATG 58.029 50.000 0.00 0.00 37.90 2.90
753 1028 2.965671 ATCATCAATGCGGGGAAGAT 57.034 45.000 0.00 0.00 0.00 2.40
755 1030 2.154462 GGTATCATCAATGCGGGGAAG 58.846 52.381 0.00 0.00 0.00 3.46
756 1031 1.492599 TGGTATCATCAATGCGGGGAA 59.507 47.619 0.00 0.00 0.00 3.97
757 1032 1.135960 TGGTATCATCAATGCGGGGA 58.864 50.000 0.00 0.00 0.00 4.81
758 1033 2.086869 GATGGTATCATCAATGCGGGG 58.913 52.381 11.25 0.00 46.74 5.73
776 1051 2.367512 GGGAGCTGTGAGGGGGAT 60.368 66.667 0.00 0.00 0.00 3.85
824 1099 1.695242 TGGTTTCTCCTCGGTTTGCTA 59.305 47.619 0.00 0.00 37.07 3.49
829 1104 3.211865 GTTTTCTGGTTTCTCCTCGGTT 58.788 45.455 0.00 0.00 37.07 4.44
907 2534 2.359230 GTGGTGGTCTGCTGGAGC 60.359 66.667 0.00 0.00 42.27 4.70
909 2536 1.426251 AATGGTGGTGGTCTGCTGGA 61.426 55.000 0.00 0.00 0.00 3.86
910 2537 0.327924 TAATGGTGGTGGTCTGCTGG 59.672 55.000 0.00 0.00 0.00 4.85
912 2539 0.328258 GGTAATGGTGGTGGTCTGCT 59.672 55.000 0.00 0.00 0.00 4.24
913 2540 0.037590 TGGTAATGGTGGTGGTCTGC 59.962 55.000 0.00 0.00 0.00 4.26
914 2541 2.806945 ATGGTAATGGTGGTGGTCTG 57.193 50.000 0.00 0.00 0.00 3.51
915 2542 2.508300 GGTATGGTAATGGTGGTGGTCT 59.492 50.000 0.00 0.00 0.00 3.85
916 2543 2.240160 TGGTATGGTAATGGTGGTGGTC 59.760 50.000 0.00 0.00 0.00 4.02
949 2576 0.745845 TCCGCCGTACTCCAGTAGAC 60.746 60.000 0.00 0.00 0.00 2.59
963 2590 1.215382 GGTTTCCAAATGCTCCGCC 59.785 57.895 0.00 0.00 0.00 6.13
966 2593 0.532115 ATGCGGTTTCCAAATGCTCC 59.468 50.000 0.00 0.00 0.00 4.70
969 2596 2.077413 TCAATGCGGTTTCCAAATGC 57.923 45.000 0.00 0.00 0.00 3.56
982 2609 1.134907 CATGCCTTGGACCTTCAATGC 60.135 52.381 0.00 0.00 38.28 3.56
1019 2646 3.591835 CCTCCTCCGAGAGAGCGC 61.592 72.222 0.00 0.00 41.74 5.92
1029 2656 1.076632 TCGAAGCTCCTCCTCCTCC 60.077 63.158 0.00 0.00 0.00 4.30
1030 2657 1.720694 CGTCGAAGCTCCTCCTCCTC 61.721 65.000 0.00 0.00 0.00 3.71
1031 2658 1.751162 CGTCGAAGCTCCTCCTCCT 60.751 63.158 0.00 0.00 0.00 3.69
1032 2659 2.776913 CCGTCGAAGCTCCTCCTCC 61.777 68.421 0.00 0.00 0.00 4.30
1033 2660 2.802106 CCGTCGAAGCTCCTCCTC 59.198 66.667 0.00 0.00 0.00 3.71
1034 2661 3.453679 GCCGTCGAAGCTCCTCCT 61.454 66.667 0.00 0.00 0.00 3.69
1035 2662 4.856607 CGCCGTCGAAGCTCCTCC 62.857 72.222 7.07 0.00 38.10 4.30
1036 2663 4.856607 CCGCCGTCGAAGCTCCTC 62.857 72.222 7.07 0.00 38.10 3.71
1042 2669 4.735132 TTCTGGCCGCCGTCGAAG 62.735 66.667 4.58 0.00 38.10 3.79
1043 2670 4.735132 CTTCTGGCCGCCGTCGAA 62.735 66.667 4.58 6.67 38.10 3.71
1046 2673 4.373116 TCACTTCTGGCCGCCGTC 62.373 66.667 4.58 0.00 0.00 4.79
1047 2674 4.379243 CTCACTTCTGGCCGCCGT 62.379 66.667 4.58 0.00 0.00 5.68
1049 2676 2.932130 GATCCTCACTTCTGGCCGCC 62.932 65.000 1.04 1.04 0.00 6.13
1052 2679 2.725221 AATGATCCTCACTTCTGGCC 57.275 50.000 0.00 0.00 0.00 5.36
1053 2680 4.517285 TGTTAATGATCCTCACTTCTGGC 58.483 43.478 0.00 0.00 0.00 4.85
1054 2681 6.176183 ACTTGTTAATGATCCTCACTTCTGG 58.824 40.000 0.00 0.00 0.00 3.86
1057 2684 7.280876 TGCATACTTGTTAATGATCCTCACTTC 59.719 37.037 0.00 0.00 0.00 3.01
1058 2685 7.112122 TGCATACTTGTTAATGATCCTCACTT 58.888 34.615 0.00 0.00 0.00 3.16
1059 2686 6.653020 TGCATACTTGTTAATGATCCTCACT 58.347 36.000 0.00 0.00 0.00 3.41
1062 2689 6.074088 CGACTGCATACTTGTTAATGATCCTC 60.074 42.308 0.00 0.00 0.00 3.71
1067 3125 5.720202 AGACGACTGCATACTTGTTAATGA 58.280 37.500 0.00 0.00 0.00 2.57
1090 3148 3.508012 AGGCCAATACAAATGTACGCAAA 59.492 39.130 5.01 0.00 32.72 3.68
1092 3150 2.421775 CAGGCCAATACAAATGTACGCA 59.578 45.455 5.01 0.00 32.72 5.24
1123 3181 1.027357 CACAAAAGCACCAGAGCACT 58.973 50.000 0.00 0.00 36.85 4.40
1127 3185 1.108727 TGCCCACAAAAGCACCAGAG 61.109 55.000 0.00 0.00 33.08 3.35
1128 3186 0.685785 TTGCCCACAAAAGCACCAGA 60.686 50.000 0.00 0.00 39.10 3.86
1129 3187 0.530431 GTTGCCCACAAAAGCACCAG 60.530 55.000 0.00 0.00 39.10 4.00
1130 3188 1.519719 GTTGCCCACAAAAGCACCA 59.480 52.632 0.00 0.00 39.10 4.17
1131 3189 1.227527 GGTTGCCCACAAAAGCACC 60.228 57.895 0.00 0.00 39.10 5.01
1132 3190 1.591327 CGGTTGCCCACAAAAGCAC 60.591 57.895 0.00 0.00 39.10 4.40
1133 3191 2.010582 GACGGTTGCCCACAAAAGCA 62.011 55.000 0.00 0.00 37.58 3.91
1134 3192 1.299850 GACGGTTGCCCACAAAAGC 60.300 57.895 0.00 0.00 37.58 3.51
1135 3193 1.008995 CGACGGTTGCCCACAAAAG 60.009 57.895 0.00 0.00 37.58 2.27
1136 3194 1.716826 GACGACGGTTGCCCACAAAA 61.717 55.000 0.00 0.00 37.58 2.44
1137 3195 2.124653 ACGACGGTTGCCCACAAA 60.125 55.556 0.00 0.00 37.58 2.83
1138 3196 2.589442 GACGACGGTTGCCCACAA 60.589 61.111 0.00 0.00 0.00 3.33
1139 3197 4.612412 GGACGACGGTTGCCCACA 62.612 66.667 0.00 0.00 0.00 4.17
1140 3198 3.819877 AAGGACGACGGTTGCCCAC 62.820 63.158 3.40 0.00 0.00 4.61
1141 3199 3.524648 GAAGGACGACGGTTGCCCA 62.525 63.158 3.40 0.00 0.00 5.36
1142 3200 2.726822 AAGAAGGACGACGGTTGCCC 62.727 60.000 0.00 0.00 0.00 5.36
1143 3201 1.301479 AAGAAGGACGACGGTTGCC 60.301 57.895 0.00 0.00 0.00 4.52
1144 3202 1.566018 CCAAGAAGGACGACGGTTGC 61.566 60.000 0.00 0.00 41.22 4.17
1145 3203 1.566018 GCCAAGAAGGACGACGGTTG 61.566 60.000 0.00 0.00 41.22 3.77
1146 3204 1.301479 GCCAAGAAGGACGACGGTT 60.301 57.895 0.00 0.00 41.22 4.44
1147 3205 2.342648 GCCAAGAAGGACGACGGT 59.657 61.111 0.00 0.00 41.22 4.83
1176 3234 4.285517 TGGAAATCTATGCTCCTCAGATCC 59.714 45.833 0.00 0.00 0.00 3.36
1181 3239 6.014755 CAGATAGTGGAAATCTATGCTCCTCA 60.015 42.308 0.00 0.00 32.40 3.86
1187 3245 5.858381 TGGTCAGATAGTGGAAATCTATGC 58.142 41.667 0.00 0.00 32.40 3.14
1189 3247 7.862274 TGATGGTCAGATAGTGGAAATCTAT 57.138 36.000 0.00 0.00 32.40 1.98
1247 3305 5.845391 ACAGTAAGAAGAGAGCTGGATAC 57.155 43.478 0.00 0.00 0.00 2.24
1271 3329 2.508867 GTCACACGCTTAACATGCATG 58.491 47.619 25.09 25.09 0.00 4.06
1272 3330 1.468520 GGTCACACGCTTAACATGCAT 59.531 47.619 0.00 0.00 0.00 3.96
1273 3331 0.871722 GGTCACACGCTTAACATGCA 59.128 50.000 0.00 0.00 0.00 3.96
1274 3332 1.156736 AGGTCACACGCTTAACATGC 58.843 50.000 0.00 0.00 0.00 4.06
1292 3350 6.036191 GGAACTATCAAAGAGGCGAACTTTAG 59.964 42.308 6.95 5.06 36.09 1.85
1297 3355 3.619038 CAGGAACTATCAAAGAGGCGAAC 59.381 47.826 0.00 0.00 36.02 3.95
1299 3357 3.096852 TCAGGAACTATCAAAGAGGCGA 58.903 45.455 0.00 0.00 36.02 5.54
1300 3358 3.526931 TCAGGAACTATCAAAGAGGCG 57.473 47.619 0.00 0.00 36.02 5.52
1301 3359 5.649831 ACAAATCAGGAACTATCAAAGAGGC 59.350 40.000 0.00 0.00 36.02 4.70
1302 3360 6.036517 CGACAAATCAGGAACTATCAAAGAGG 59.963 42.308 0.00 0.00 36.02 3.69
1313 3377 4.941873 ACCCTAATTCGACAAATCAGGAAC 59.058 41.667 0.00 0.00 0.00 3.62
1334 3398 8.997323 CCAGATGAATGAAAGATATACAAGACC 58.003 37.037 0.00 0.00 0.00 3.85
1366 3430 2.050836 TACAGCATACATGGCGGGGG 62.051 60.000 0.00 0.00 36.08 5.40
1367 3431 0.179032 TTACAGCATACATGGCGGGG 60.179 55.000 0.00 0.00 36.08 5.73
1368 3432 0.944386 GTTACAGCATACATGGCGGG 59.056 55.000 0.00 0.00 36.08 6.13
1369 3433 1.330521 GTGTTACAGCATACATGGCGG 59.669 52.381 0.00 0.00 36.08 6.13
1370 3434 2.279741 AGTGTTACAGCATACATGGCG 58.720 47.619 0.00 0.00 36.08 5.69
1371 3435 3.310774 CAGAGTGTTACAGCATACATGGC 59.689 47.826 0.00 0.00 0.00 4.40
1372 3436 3.873361 CCAGAGTGTTACAGCATACATGG 59.127 47.826 0.00 0.00 0.00 3.66
1373 3437 3.873361 CCCAGAGTGTTACAGCATACATG 59.127 47.826 0.00 0.00 0.00 3.21
1374 3438 3.118261 CCCCAGAGTGTTACAGCATACAT 60.118 47.826 0.00 0.00 0.00 2.29
1375 3439 2.236146 CCCCAGAGTGTTACAGCATACA 59.764 50.000 0.00 0.00 0.00 2.29
1376 3440 2.236395 ACCCCAGAGTGTTACAGCATAC 59.764 50.000 0.00 0.00 0.00 2.39
1377 3441 2.500098 GACCCCAGAGTGTTACAGCATA 59.500 50.000 0.00 0.00 0.00 3.14
1378 3442 1.279271 GACCCCAGAGTGTTACAGCAT 59.721 52.381 0.00 0.00 0.00 3.79
1379 3443 0.685097 GACCCCAGAGTGTTACAGCA 59.315 55.000 0.00 0.00 0.00 4.41
1380 3444 0.977395 AGACCCCAGAGTGTTACAGC 59.023 55.000 0.00 0.00 0.00 4.40
1381 3445 1.971357 ACAGACCCCAGAGTGTTACAG 59.029 52.381 0.00 0.00 0.00 2.74
1382 3446 2.097110 ACAGACCCCAGAGTGTTACA 57.903 50.000 0.00 0.00 0.00 2.41
1383 3447 4.612264 TTTACAGACCCCAGAGTGTTAC 57.388 45.455 0.00 0.00 0.00 2.50
1384 3448 4.501915 CGTTTTACAGACCCCAGAGTGTTA 60.502 45.833 0.00 0.00 0.00 2.41
1385 3449 3.743269 CGTTTTACAGACCCCAGAGTGTT 60.743 47.826 0.00 0.00 0.00 3.32
1386 3450 2.224209 CGTTTTACAGACCCCAGAGTGT 60.224 50.000 0.00 0.00 0.00 3.55
1387 3451 2.413837 CGTTTTACAGACCCCAGAGTG 58.586 52.381 0.00 0.00 0.00 3.51
1388 3452 1.346722 CCGTTTTACAGACCCCAGAGT 59.653 52.381 0.00 0.00 0.00 3.24
1389 3453 1.338769 CCCGTTTTACAGACCCCAGAG 60.339 57.143 0.00 0.00 0.00 3.35
1390 3454 0.688487 CCCGTTTTACAGACCCCAGA 59.312 55.000 0.00 0.00 0.00 3.86
1391 3455 0.322187 CCCCGTTTTACAGACCCCAG 60.322 60.000 0.00 0.00 0.00 4.45
1392 3456 1.762471 CCCCGTTTTACAGACCCCA 59.238 57.895 0.00 0.00 0.00 4.96
1393 3457 1.676635 GCCCCGTTTTACAGACCCC 60.677 63.158 0.00 0.00 0.00 4.95
1394 3458 0.958876 CTGCCCCGTTTTACAGACCC 60.959 60.000 0.00 0.00 31.67 4.46
1395 3459 1.583495 GCTGCCCCGTTTTACAGACC 61.583 60.000 0.00 0.00 31.67 3.85
1396 3460 0.887387 TGCTGCCCCGTTTTACAGAC 60.887 55.000 0.00 0.00 31.67 3.51
1397 3461 0.605319 CTGCTGCCCCGTTTTACAGA 60.605 55.000 0.00 0.00 31.67 3.41
1398 3462 0.605319 TCTGCTGCCCCGTTTTACAG 60.605 55.000 0.00 0.00 0.00 2.74
1399 3463 0.605319 CTCTGCTGCCCCGTTTTACA 60.605 55.000 0.00 0.00 0.00 2.41
1400 3464 1.923227 GCTCTGCTGCCCCGTTTTAC 61.923 60.000 0.00 0.00 0.00 2.01
1401 3465 1.674322 GCTCTGCTGCCCCGTTTTA 60.674 57.895 0.00 0.00 0.00 1.52
1402 3466 2.985847 GCTCTGCTGCCCCGTTTT 60.986 61.111 0.00 0.00 0.00 2.43
1403 3467 4.269523 TGCTCTGCTGCCCCGTTT 62.270 61.111 0.00 0.00 0.00 3.60
1407 3471 2.876368 ATAACGTGCTCTGCTGCCCC 62.876 60.000 0.00 0.00 0.00 5.80
1408 3472 1.026718 AATAACGTGCTCTGCTGCCC 61.027 55.000 0.00 0.00 0.00 5.36
1409 3473 0.804989 AAATAACGTGCTCTGCTGCC 59.195 50.000 0.00 0.00 0.00 4.85
1410 3474 2.619013 AAAATAACGTGCTCTGCTGC 57.381 45.000 0.00 0.00 0.00 5.25
1411 3475 5.565259 CAGTTTAAAATAACGTGCTCTGCTG 59.435 40.000 0.00 0.00 33.26 4.41
1412 3476 5.689819 CAGTTTAAAATAACGTGCTCTGCT 58.310 37.500 0.00 0.00 33.26 4.24
1413 3477 4.320953 GCAGTTTAAAATAACGTGCTCTGC 59.679 41.667 0.00 0.00 37.87 4.26
1414 3478 5.689819 AGCAGTTTAAAATAACGTGCTCTG 58.310 37.500 0.00 0.00 37.66 3.35
1415 3479 5.941948 AGCAGTTTAAAATAACGTGCTCT 57.058 34.783 0.00 0.00 37.66 4.09
1416 3480 8.496872 TTTTAGCAGTTTAAAATAACGTGCTC 57.503 30.769 12.98 0.00 40.10 4.26
1417 3481 8.859517 TTTTTAGCAGTTTAAAATAACGTGCT 57.140 26.923 13.66 13.66 41.23 4.40
1496 3931 7.490657 TTTCACAGGTACTTATAGACCACAT 57.509 36.000 0.00 0.00 38.27 3.21
1533 3968 3.863424 GTGCAGCACATAGTACAACGTAT 59.137 43.478 21.22 0.00 34.08 3.06
1534 3969 3.247442 GTGCAGCACATAGTACAACGTA 58.753 45.455 21.22 0.00 34.08 3.57
1536 3971 1.393539 GGTGCAGCACATAGTACAACG 59.606 52.381 26.78 0.00 35.86 4.10
1544 3979 2.954989 TGTCTTTTTGGTGCAGCACATA 59.045 40.909 26.78 12.49 35.86 2.29
1640 4075 7.832503 ACTTGCCAAAATTTCAGCAATATAC 57.167 32.000 21.38 0.00 43.70 1.47
1660 4095 3.120820 TGTTTGCGAGCACGTATAACTTG 60.121 43.478 5.23 0.00 41.98 3.16
1661 4096 3.061322 TGTTTGCGAGCACGTATAACTT 58.939 40.909 5.23 0.00 41.98 2.66
1688 4123 8.547069 CAGATTTTTACGGCTTGAAAAATTCAA 58.453 29.630 13.27 5.50 46.68 2.69
1690 4125 8.072238 ACAGATTTTTACGGCTTGAAAAATTC 57.928 30.769 13.27 8.09 42.46 2.17
1691 4126 8.432110 AACAGATTTTTACGGCTTGAAAAATT 57.568 26.923 13.27 5.44 42.46 1.82
1738 4178 0.747644 TGAGCACGGGCACATTATGG 60.748 55.000 14.57 0.00 44.61 2.74
1770 4210 1.762708 AAAGTCCGGGCACATTATGG 58.237 50.000 9.71 0.00 0.00 2.74
1771 4211 5.060506 TGTATAAAGTCCGGGCACATTATG 58.939 41.667 9.71 0.00 0.00 1.90
1772 4212 5.298989 TGTATAAAGTCCGGGCACATTAT 57.701 39.130 9.71 12.47 0.00 1.28
1773 4213 4.757019 TGTATAAAGTCCGGGCACATTA 57.243 40.909 9.71 5.03 0.00 1.90
1774 4214 3.637911 TGTATAAAGTCCGGGCACATT 57.362 42.857 9.71 2.48 0.00 2.71
1775 4215 3.857157 ATGTATAAAGTCCGGGCACAT 57.143 42.857 9.71 5.90 0.00 3.21
1776 4216 3.962063 TCTATGTATAAAGTCCGGGCACA 59.038 43.478 9.71 3.10 0.00 4.57
1777 4217 4.557205 CTCTATGTATAAAGTCCGGGCAC 58.443 47.826 9.71 0.00 0.00 5.01
1778 4218 3.006537 GCTCTATGTATAAAGTCCGGGCA 59.993 47.826 9.71 0.00 0.00 5.36
1779 4219 3.258622 AGCTCTATGTATAAAGTCCGGGC 59.741 47.826 0.00 0.00 0.00 6.13
1780 4220 6.585695 TTAGCTCTATGTATAAAGTCCGGG 57.414 41.667 0.00 0.00 0.00 5.73
1781 4221 7.036220 CCATTAGCTCTATGTATAAAGTCCGG 58.964 42.308 0.00 0.00 0.00 5.14
1782 4222 6.531948 GCCATTAGCTCTATGTATAAAGTCCG 59.468 42.308 0.00 0.00 38.99 4.79
1783 4223 6.531948 CGCCATTAGCTCTATGTATAAAGTCC 59.468 42.308 0.00 0.00 40.39 3.85
1784 4224 7.313646 TCGCCATTAGCTCTATGTATAAAGTC 58.686 38.462 0.00 0.00 40.39 3.01
1804 4244 2.975799 GGCAAAGGACGTTCGCCA 60.976 61.111 4.97 0.00 42.50 5.69
1806 4246 0.248702 TTTTGGCAAAGGACGTTCGC 60.249 50.000 13.04 0.00 0.00 4.70
1817 4257 7.083858 CGACAAAGAGATCTTATTTTTGGCAA 58.916 34.615 19.72 0.00 36.74 4.52
1892 4332 5.227152 CGCCATAAGCTACTTTTGGTTTTT 58.773 37.500 15.30 0.00 42.05 1.94
1893 4333 4.805219 CGCCATAAGCTACTTTTGGTTTT 58.195 39.130 15.30 0.00 42.05 2.43
1894 4334 3.366985 GCGCCATAAGCTACTTTTGGTTT 60.367 43.478 15.30 0.00 42.05 3.27
1910 4350 0.748450 CCTGGAATTTCATGCGCCAT 59.252 50.000 4.18 0.00 0.00 4.40
1978 4418 3.146847 CCAATTTCGGGTAGGCCTTATC 58.853 50.000 12.58 1.59 34.45 1.75
2061 4513 4.613622 CGAATAGCCTGTTGTTTGTTCCAG 60.614 45.833 0.00 0.00 0.00 3.86
2277 4751 0.458669 ACCCACGCCGAAGTACATAG 59.541 55.000 0.00 0.00 0.00 2.23
2278 4752 0.173935 CACCCACGCCGAAGTACATA 59.826 55.000 0.00 0.00 0.00 2.29
2279 4753 1.079405 CACCCACGCCGAAGTACAT 60.079 57.895 0.00 0.00 0.00 2.29
2323 4797 3.532896 CTTTGCTAGACGAAGCCCA 57.467 52.632 0.00 0.00 42.05 5.36
2517 4991 5.348986 GCGAGTATCCAAGAAGTACATTGA 58.651 41.667 0.00 0.00 0.00 2.57
2655 5129 5.303333 TCAATCAGCATGGTTAGTATCCGTA 59.697 40.000 0.00 0.00 37.29 4.02
2660 5134 5.698089 CACGATCAATCAGCATGGTTAGTAT 59.302 40.000 0.00 0.00 37.29 2.12
2719 5202 6.633500 TTCTGAATTCTTTGTTTCGGTGAT 57.367 33.333 7.05 0.00 31.52 3.06
2805 5288 1.930100 GCGAGATGCTCCACAATCG 59.070 57.895 0.00 0.00 41.80 3.34
2889 5378 3.118665 CCCAGCTTCAAATGGTAAATGGG 60.119 47.826 0.00 0.00 38.98 4.00
2997 5504 1.981256 TGAAAGAAGACCCTTGGTGC 58.019 50.000 0.00 0.00 35.25 5.01
3130 5640 4.666253 TGGCCTGTGCTTCCTGGC 62.666 66.667 3.32 9.80 45.72 4.85
3146 5656 4.330894 TGCAATTAGACTTCGCATCTCTTG 59.669 41.667 0.00 0.00 0.00 3.02
3265 5775 4.738252 TGCAATACTAATCGTGTAAGAGCG 59.262 41.667 0.00 0.00 0.00 5.03
3349 5868 8.421249 TCAAATAATCTTCCAACCAATCTGTT 57.579 30.769 0.00 0.00 0.00 3.16
3398 5917 6.319141 CTGGCTTACAGTTTTCTTAGCTTT 57.681 37.500 0.00 0.00 42.42 3.51
3603 6122 3.699779 TGACTGCTGAGCTAATACGAG 57.300 47.619 5.83 0.00 0.00 4.18
3614 6133 2.845363 TGCTTCAAGATGACTGCTGA 57.155 45.000 0.00 0.00 30.62 4.26
3916 8380 6.932901 AAATGAAATGCATCGTGTTGTAAG 57.067 33.333 0.00 0.00 35.78 2.34
3971 8442 0.442699 CGAACGCTTGAGTTTAGGGC 59.557 55.000 0.00 0.00 34.00 5.19
3986 8457 0.948678 TTGTACTTGCAAGGGCGAAC 59.051 50.000 29.18 18.01 45.35 3.95
3988 8459 1.681538 TTTTGTACTTGCAAGGGCGA 58.318 45.000 29.18 17.74 45.35 5.54
4054 8549 3.368571 GCCTGAGTGCCTGCAACC 61.369 66.667 0.00 0.00 0.00 3.77
4139 8737 1.000843 ACGAGTGATAACAGTGCTGCA 59.999 47.619 0.00 0.00 0.00 4.41
4229 8827 3.490348 CCTCACCACAAAATCTTCCAGT 58.510 45.455 0.00 0.00 0.00 4.00
4289 8887 0.541392 TCTGTATCGCCAGGCATGTT 59.459 50.000 13.30 0.00 33.14 2.71
4476 9077 4.978099 AGAACAGATGAAAGAGGCTTCAA 58.022 39.130 0.00 0.00 38.75 2.69
4590 9191 3.119291 GAGATACTCCGTGATGCAACAG 58.881 50.000 0.00 0.00 0.00 3.16
4866 9486 0.987294 ACAGTAGTTGGCAGCTCCAT 59.013 50.000 7.27 0.00 46.04 3.41
4892 9512 3.192466 GGTGAGAATTGCATTGCCATTC 58.808 45.455 21.74 21.74 39.82 2.67
4897 9517 1.733389 CGTGGGTGAGAATTGCATTGC 60.733 52.381 0.46 0.46 0.00 3.56
5008 9633 7.479980 TGGACTGACAAACAACAAGATAAAAG 58.520 34.615 0.00 0.00 0.00 2.27
5027 9655 1.534163 CACTGTCAGTTGCATGGACTG 59.466 52.381 10.23 10.23 44.54 3.51
5149 9785 2.622942 CAGGGAAAACAAAGCTACTGCA 59.377 45.455 0.00 0.00 42.74 4.41
5158 9794 2.757868 CTCACACCACAGGGAAAACAAA 59.242 45.455 0.00 0.00 38.05 2.83
5199 9836 0.392998 CCCCCGCCTGTCATATATGC 60.393 60.000 7.92 4.27 0.00 3.14
5272 9909 0.710567 GTGAGTGACTGATTGCGACG 59.289 55.000 0.00 0.00 0.00 5.12
5308 9945 4.107311 AGAGGAGTAGAAGGAGATAAGGGG 59.893 50.000 0.00 0.00 0.00 4.79
5348 9985 1.549203 CAACTGGCCATTACCAAGCT 58.451 50.000 5.51 0.00 39.86 3.74


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.