Multiple sequence alignment - TraesCS2D01G554800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G554800 chr2D 100.000 4378 0 0 1 4378 629073158 629077535 0.000000e+00 8085.0
1 TraesCS2D01G554800 chr2D 100.000 3367 0 0 4766 8132 629077923 629081289 0.000000e+00 6218.0
2 TraesCS2D01G554800 chr2D 79.268 328 59 8 1031 1355 477264770 477264449 3.820000e-53 220.0
3 TraesCS2D01G554800 chr2D 79.118 340 55 12 1021 1355 477270122 477270450 3.820000e-53 220.0
4 TraesCS2D01G554800 chr2D 74.772 329 70 11 1033 1356 537928655 537928975 1.420000e-27 135.0
5 TraesCS2D01G554800 chr2D 88.710 62 7 0 1797 1858 537929239 537929300 8.750000e-10 76.8
6 TraesCS2D01G554800 chr2D 83.333 84 11 3 1996 2077 493175804 493175722 3.150000e-09 75.0
7 TraesCS2D01G554800 chr2B 88.196 2245 184 40 1396 3609 772121547 772119353 0.000000e+00 2603.0
8 TraesCS2D01G554800 chr2B 94.747 1618 52 11 5680 7284 772117296 772115699 0.000000e+00 2486.0
9 TraesCS2D01G554800 chr2B 94.307 808 25 10 643 1431 772122346 772121541 0.000000e+00 1218.0
10 TraesCS2D01G554800 chr2B 82.439 1304 181 23 2344 3609 513252077 513250784 0.000000e+00 1096.0
11 TraesCS2D01G554800 chr2B 86.253 902 56 30 4766 5609 772118182 772117291 0.000000e+00 917.0
12 TraesCS2D01G554800 chr2B 82.027 957 149 17 2303 3250 95750620 95749678 0.000000e+00 793.0
13 TraesCS2D01G554800 chr2B 79.034 911 171 17 6168 7068 559189687 559188787 2.510000e-169 606.0
14 TraesCS2D01G554800 chr2B 84.165 581 47 23 3601 4158 772119331 772118773 9.350000e-144 521.0
15 TraesCS2D01G554800 chr2B 88.579 359 37 2 1 359 772138884 772138530 4.510000e-117 433.0
16 TraesCS2D01G554800 chr2B 80.592 304 50 8 1055 1355 559193236 559192939 8.210000e-55 226.0
17 TraesCS2D01G554800 chr2B 79.091 330 56 10 1031 1355 559306323 559306644 1.780000e-51 215.0
18 TraesCS2D01G554800 chr2B 83.815 173 21 5 7278 7444 772115667 772115496 3.040000e-34 158.0
19 TraesCS2D01G554800 chr2B 78.431 255 43 11 4111 4357 649003629 649003379 1.090000e-33 156.0
20 TraesCS2D01G554800 chr2B 75.161 310 64 11 1055 1359 640599033 640599334 5.120000e-27 134.0
21 TraesCS2D01G554800 chr2B 82.143 84 12 3 1996 2077 581469807 581469725 1.460000e-07 69.4
22 TraesCS2D01G554800 chr2B 80.952 84 13 3 1996 2077 42565570 42565652 6.810000e-06 63.9
23 TraesCS2D01G554800 chr2A 93.492 1767 81 16 5714 7466 758882059 758883805 0.000000e+00 2595.0
24 TraesCS2D01G554800 chr2A 91.599 1476 56 37 657 2100 758880517 758881956 0.000000e+00 1977.0
25 TraesCS2D01G554800 chr2A 78.180 912 177 18 6168 7068 619625281 619624381 5.510000e-156 562.0
26 TraesCS2D01G554800 chr2A 93.593 359 18 2 1 358 758879640 758879994 1.550000e-146 531.0
27 TraesCS2D01G554800 chr2A 91.212 330 20 3 7619 7947 758888824 758889145 2.690000e-119 440.0
28 TraesCS2D01G554800 chr2A 94.872 195 10 0 7938 8132 758889299 758889493 1.030000e-78 305.0
29 TraesCS2D01G554800 chr2A 80.606 330 50 13 1031 1355 619628322 619628002 8.150000e-60 243.0
30 TraesCS2D01G554800 chr2A 79.635 329 56 7 1031 1355 619755066 619755387 8.210000e-55 226.0
31 TraesCS2D01G554800 chr2A 80.078 256 42 8 1093 1345 640706595 640706844 1.800000e-41 182.0
32 TraesCS2D01G554800 chr2A 91.111 135 8 1 7463 7597 758886782 758886912 6.480000e-41 180.0
33 TraesCS2D01G554800 chr2A 82.955 176 21 7 4165 4335 778749166 778748995 5.080000e-32 150.0
34 TraesCS2D01G554800 chr2A 75.563 311 61 12 1055 1359 680261556 680261857 1.100000e-28 139.0
35 TraesCS2D01G554800 chr2A 77.033 209 33 14 4063 4265 758366879 758367078 1.120000e-18 106.0
36 TraesCS2D01G554800 chr2A 80.469 128 20 5 4216 4339 503635418 503635544 8.690000e-15 93.5
37 TraesCS2D01G554800 chr2A 88.710 62 7 0 1797 1858 680262122 680262183 8.750000e-10 76.8
38 TraesCS2D01G554800 chr2A 82.143 84 12 3 1996 2077 640271220 640271302 1.460000e-07 69.4
39 TraesCS2D01G554800 chr3A 84.328 1123 132 19 2303 3394 240366385 240367494 0.000000e+00 1059.0
40 TraesCS2D01G554800 chr5A 82.653 1176 161 17 2393 3533 658357914 658359081 0.000000e+00 1002.0
41 TraesCS2D01G554800 chr5A 79.926 269 36 7 7874 8132 115703581 115703321 1.800000e-41 182.0
42 TraesCS2D01G554800 chr5A 79.612 206 35 6 4766 4970 447140806 447140607 3.060000e-29 141.0
43 TraesCS2D01G554800 chr5D 83.702 1086 144 16 2350 3409 340810 341888 0.000000e+00 994.0
44 TraesCS2D01G554800 chr5D 76.860 242 45 8 4035 4275 426450210 426449979 8.570000e-25 126.0
45 TraesCS2D01G554800 chr1D 84.015 1051 131 17 2415 3436 414344191 414343149 0.000000e+00 976.0
46 TraesCS2D01G554800 chr1D 82.236 957 150 11 2303 3250 410736910 410735965 0.000000e+00 808.0
47 TraesCS2D01G554800 chr1D 76.245 964 81 66 4766 5662 349094319 349095201 7.710000e-100 375.0
48 TraesCS2D01G554800 chr1D 82.731 249 29 8 4766 5013 307695431 307695196 8.270000e-50 209.0
49 TraesCS2D01G554800 chr1D 79.273 275 38 12 4766 5031 410479773 410479509 3.020000e-39 174.0
50 TraesCS2D01G554800 chr1D 85.802 162 19 2 5464 5625 100908896 100909053 1.400000e-37 169.0
51 TraesCS2D01G554800 chr4D 82.445 957 143 22 2305 3250 507690166 507691108 0.000000e+00 813.0
52 TraesCS2D01G554800 chr6A 78.170 765 144 19 6319 7071 410867807 410868560 4.440000e-127 466.0
53 TraesCS2D01G554800 chr6A 78.061 588 78 34 3804 4358 8006095 8006664 2.830000e-84 324.0
54 TraesCS2D01G554800 chr6A 81.766 351 44 16 4022 4357 544470807 544470462 8.040000e-70 276.0
55 TraesCS2D01G554800 chr6A 75.250 501 66 33 4766 5227 598795009 598794528 1.390000e-42 185.0
56 TraesCS2D01G554800 chr6A 75.694 432 45 27 5266 5661 8008451 8008858 2.350000e-35 161.0
57 TraesCS2D01G554800 chr6A 92.982 57 4 0 1797 1853 22547542 22547598 5.230000e-12 84.2
58 TraesCS2D01G554800 chr6A 100.000 34 0 0 2193 2226 40224687 40224654 6.810000e-06 63.9
59 TraesCS2D01G554800 chr6A 89.583 48 5 0 2253 2300 544471172 544471125 2.450000e-05 62.1
60 TraesCS2D01G554800 chr6D 77.255 765 151 20 6319 7071 304295689 304294936 2.100000e-115 427.0
61 TraesCS2D01G554800 chr6D 78.571 588 86 29 3804 4358 7742531 7743111 1.300000e-92 351.0
62 TraesCS2D01G554800 chr6D 79.727 439 54 23 4786 5205 452846591 452846169 1.340000e-72 285.0
63 TraesCS2D01G554800 chr6D 79.330 358 45 24 4866 5218 409870530 409870863 2.950000e-54 224.0
64 TraesCS2D01G554800 chr6D 77.934 426 46 19 5271 5661 7745019 7745431 1.060000e-53 222.0
65 TraesCS2D01G554800 chr6D 82.110 218 30 7 4829 5046 304293519 304293311 2.330000e-40 178.0
66 TraesCS2D01G554800 chr6D 94.737 57 3 0 1797 1853 24023000 24023056 1.120000e-13 89.8
67 TraesCS2D01G554800 chr6D 97.368 38 1 0 2194 2231 447445720 447445757 1.890000e-06 65.8
68 TraesCS2D01G554800 chr6B 76.289 970 118 56 4769 5662 14516823 14515890 1.630000e-111 414.0
69 TraesCS2D01G554800 chr6B 76.801 569 87 33 3805 4358 14519912 14519374 2.240000e-70 278.0
70 TraesCS2D01G554800 chr6B 81.311 305 46 9 1055 1355 472614068 472613771 3.790000e-58 237.0
71 TraesCS2D01G554800 chr6B 75.476 473 59 31 4766 5205 687742956 687742508 2.330000e-40 178.0
72 TraesCS2D01G554800 chr6B 78.824 170 29 4 3601 3770 146713727 146713565 3.100000e-19 108.0
73 TraesCS2D01G554800 chr6B 94.737 57 3 0 1797 1853 38926148 38926204 1.120000e-13 89.8
74 TraesCS2D01G554800 chr1A 78.606 416 47 28 4870 5249 517388845 517388436 3.790000e-58 237.0
75 TraesCS2D01G554800 chr1A 78.964 309 31 17 5363 5650 104431774 104431479 6.480000e-41 180.0
76 TraesCS2D01G554800 chr1A 81.429 210 26 12 4766 4971 444423794 444423994 8.450000e-35 159.0
77 TraesCS2D01G554800 chr1B 84.422 199 20 5 5464 5662 150775117 150774930 1.390000e-42 185.0
78 TraesCS2D01G554800 chr7D 76.190 252 52 7 4112 4358 565298660 565298412 8.570000e-25 126.0
79 TraesCS2D01G554800 chr7D 74.621 264 50 14 4063 4322 489014579 489014829 5.190000e-17 100.0
80 TraesCS2D01G554800 chr7D 77.515 169 29 9 3602 3768 49162974 49163135 8.690000e-15 93.5
81 TraesCS2D01G554800 chr5B 76.639 244 42 12 4035 4275 516457073 516456842 3.990000e-23 121.0
82 TraesCS2D01G554800 chr4A 89.796 49 4 1 2184 2232 716959173 716959126 2.450000e-05 62.1
83 TraesCS2D01G554800 chr7A 94.737 38 2 0 3730 3767 5600841 5600804 8.810000e-05 60.2
84 TraesCS2D01G554800 chr7B 96.875 32 1 0 3730 3761 694261514 694261483 4.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G554800 chr2D 629073158 629081289 8131 False 7151.500000 8085 100.0000 1 8132 2 chr2D.!!$F3 8131
1 TraesCS2D01G554800 chr2B 772115496 772122346 6850 True 1317.166667 2603 88.5805 643 7444 6 chr2B.!!$R7 6801
2 TraesCS2D01G554800 chr2B 513250784 513252077 1293 True 1096.000000 1096 82.4390 2344 3609 1 chr2B.!!$R2 1265
3 TraesCS2D01G554800 chr2B 95749678 95750620 942 True 793.000000 793 82.0270 2303 3250 1 chr2B.!!$R1 947
4 TraesCS2D01G554800 chr2B 559188787 559193236 4449 True 416.000000 606 79.8130 1055 7068 2 chr2B.!!$R6 6013
5 TraesCS2D01G554800 chr2A 758879640 758889493 9853 False 1004.666667 2595 92.6465 1 8132 6 chr2A.!!$F7 8131
6 TraesCS2D01G554800 chr2A 619624381 619628322 3941 True 402.500000 562 79.3930 1031 7068 2 chr2A.!!$R2 6037
7 TraesCS2D01G554800 chr3A 240366385 240367494 1109 False 1059.000000 1059 84.3280 2303 3394 1 chr3A.!!$F1 1091
8 TraesCS2D01G554800 chr5A 658357914 658359081 1167 False 1002.000000 1002 82.6530 2393 3533 1 chr5A.!!$F1 1140
9 TraesCS2D01G554800 chr5D 340810 341888 1078 False 994.000000 994 83.7020 2350 3409 1 chr5D.!!$F1 1059
10 TraesCS2D01G554800 chr1D 414343149 414344191 1042 True 976.000000 976 84.0150 2415 3436 1 chr1D.!!$R4 1021
11 TraesCS2D01G554800 chr1D 410735965 410736910 945 True 808.000000 808 82.2360 2303 3250 1 chr1D.!!$R3 947
12 TraesCS2D01G554800 chr1D 349094319 349095201 882 False 375.000000 375 76.2450 4766 5662 1 chr1D.!!$F2 896
13 TraesCS2D01G554800 chr4D 507690166 507691108 942 False 813.000000 813 82.4450 2305 3250 1 chr4D.!!$F1 945
14 TraesCS2D01G554800 chr6A 410867807 410868560 753 False 466.000000 466 78.1700 6319 7071 1 chr6A.!!$F2 752
15 TraesCS2D01G554800 chr6A 8006095 8008858 2763 False 242.500000 324 76.8775 3804 5661 2 chr6A.!!$F3 1857
16 TraesCS2D01G554800 chr6D 304293311 304295689 2378 True 302.500000 427 79.6825 4829 7071 2 chr6D.!!$R2 2242
17 TraesCS2D01G554800 chr6D 7742531 7745431 2900 False 286.500000 351 78.2525 3804 5661 2 chr6D.!!$F4 1857
18 TraesCS2D01G554800 chr6B 14515890 14519912 4022 True 346.000000 414 76.5450 3805 5662 2 chr6B.!!$R4 1857

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
391 392 0.257616 CGGGTGGGATGGGTATGTTT 59.742 55.000 0.00 0.00 0.00 2.83 F
1404 1817 0.108898 GATCTCCATCGATCGCTGGG 60.109 60.000 31.48 23.14 32.69 4.45 F
2404 4899 0.035458 CCCGGAGCAGAAAGACAAGT 59.965 55.000 0.73 0.00 0.00 3.16 F
3218 5728 0.039256 TAGTTACGTTGCCTTCGCGT 60.039 50.000 5.77 0.00 41.86 6.01 F
3446 5975 0.385751 CGCCAGAGCTCGAGGATTTA 59.614 55.000 26.33 0.00 36.60 1.40 F
3477 6013 0.615544 CTAGGGTTGGGGGACGTGTA 60.616 60.000 0.00 0.00 0.00 2.90 F
3784 6352 0.790814 GGGCTTCGTTTCAGAACTCG 59.209 55.000 1.70 1.70 33.51 4.18 F
5668 11487 1.067142 TGCACGTAATCTCCACTGACC 60.067 52.381 0.00 0.00 0.00 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2358 4853 0.107643 TTCATGCCGGTCTGTGTTCA 59.892 50.000 1.90 0.0 0.00 3.18 R
2526 5023 0.036483 TGAAGGCGCTATGTTGCTCA 60.036 50.000 7.64 0.0 0.00 4.26 R
3880 6457 0.974010 CACTGGAATGGGCATTGGCT 60.974 55.000 10.31 0.0 40.87 4.75 R
5051 9632 5.231702 TCGTGACCTTGGTATTACCTTTT 57.768 39.130 13.90 0.0 39.58 2.27 R
5331 11100 0.035739 TACCGTGCAACTTTCCTCCC 59.964 55.000 0.00 0.0 31.75 4.30 R
5455 11227 4.197750 AGCTCTTGGAGAATTGCATACAG 58.802 43.478 0.00 0.0 0.00 2.74 R
5681 11500 0.103026 CGAGGGAGTCATGCGATTGA 59.897 55.000 0.00 0.0 0.00 2.57 R
7552 16735 0.255033 TTCTCCTCCTGACGGATCGA 59.745 55.000 0.00 0.0 39.01 3.59 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 3.742385 CAACCGGTAAACCTAGGTTCAA 58.258 45.455 27.24 15.72 44.30 2.69
50 51 1.197036 CTCTAATGCATGCATCTGCCG 59.803 52.381 32.25 18.07 41.58 5.69
57 58 3.942377 ATGCATCTGCCGCCAACCA 62.942 57.895 0.00 0.00 41.18 3.67
66 67 2.504681 CGCCAACCATTCTTGCGC 60.505 61.111 0.00 0.00 0.00 6.09
70 71 1.442520 CAACCATTCTTGCGCGGTG 60.443 57.895 8.83 0.00 0.00 4.94
139 140 1.432270 GCTATGGCAGACGACTTGGC 61.432 60.000 0.00 0.00 38.54 4.52
187 188 1.407258 AGACTAGCAATGCGAGGAGAC 59.593 52.381 18.93 7.85 35.65 3.36
200 201 3.782046 CGAGGAGACGTGGATGTTAAAT 58.218 45.455 0.00 0.00 0.00 1.40
263 264 8.313292 AGTTTATACTTTATACCGACAACCACA 58.687 33.333 0.00 0.00 0.00 4.17
279 280 1.003233 CCACACCTTTCCCTAGTCCAC 59.997 57.143 0.00 0.00 0.00 4.02
280 281 0.974383 ACACCTTTCCCTAGTCCACG 59.026 55.000 0.00 0.00 0.00 4.94
281 282 1.263356 CACCTTTCCCTAGTCCACGA 58.737 55.000 0.00 0.00 0.00 4.35
282 283 1.067071 CACCTTTCCCTAGTCCACGAC 60.067 57.143 0.00 0.00 0.00 4.34
283 284 0.535797 CCTTTCCCTAGTCCACGACC 59.464 60.000 0.00 0.00 32.18 4.79
292 293 0.611062 AGTCCACGACCGATCCTTCA 60.611 55.000 0.00 0.00 32.18 3.02
325 326 5.006746 GGTATTGCAATCGAGTAAGAAGGTG 59.993 44.000 16.86 0.00 0.00 4.00
326 327 3.678056 TGCAATCGAGTAAGAAGGTGT 57.322 42.857 0.00 0.00 0.00 4.16
335 336 4.618965 GAGTAAGAAGGTGTTGTTCGACT 58.381 43.478 0.00 0.00 31.51 4.18
343 344 3.446516 AGGTGTTGTTCGACTATAGGGTC 59.553 47.826 4.43 0.00 0.00 4.46
355 356 2.715763 ATAGGGTCGGATGGGTATGT 57.284 50.000 0.00 0.00 0.00 2.29
358 359 1.489230 AGGGTCGGATGGGTATGTTTC 59.511 52.381 0.00 0.00 0.00 2.78
359 360 1.489230 GGGTCGGATGGGTATGTTTCT 59.511 52.381 0.00 0.00 0.00 2.52
360 361 2.092592 GGGTCGGATGGGTATGTTTCTT 60.093 50.000 0.00 0.00 0.00 2.52
362 363 3.626217 GGTCGGATGGGTATGTTTCTTTC 59.374 47.826 0.00 0.00 0.00 2.62
363 364 4.514401 GTCGGATGGGTATGTTTCTTTCT 58.486 43.478 0.00 0.00 0.00 2.52
364 365 4.571176 GTCGGATGGGTATGTTTCTTTCTC 59.429 45.833 0.00 0.00 0.00 2.87
365 366 4.469945 TCGGATGGGTATGTTTCTTTCTCT 59.530 41.667 0.00 0.00 0.00 3.10
366 367 5.045869 TCGGATGGGTATGTTTCTTTCTCTT 60.046 40.000 0.00 0.00 0.00 2.85
367 368 5.648092 CGGATGGGTATGTTTCTTTCTCTTT 59.352 40.000 0.00 0.00 0.00 2.52
368 369 6.151144 CGGATGGGTATGTTTCTTTCTCTTTT 59.849 38.462 0.00 0.00 0.00 2.27
369 370 7.309194 CGGATGGGTATGTTTCTTTCTCTTTTT 60.309 37.037 0.00 0.00 0.00 1.94
383 384 3.784573 TTTTTGCGGGTGGGATGG 58.215 55.556 0.00 0.00 0.00 3.51
384 385 1.910772 TTTTTGCGGGTGGGATGGG 60.911 57.895 0.00 0.00 0.00 4.00
385 386 2.664835 TTTTTGCGGGTGGGATGGGT 62.665 55.000 0.00 0.00 0.00 4.51
386 387 1.790635 TTTTGCGGGTGGGATGGGTA 61.791 55.000 0.00 0.00 0.00 3.69
387 388 1.576368 TTTGCGGGTGGGATGGGTAT 61.576 55.000 0.00 0.00 0.00 2.73
388 389 2.113139 GCGGGTGGGATGGGTATG 59.887 66.667 0.00 0.00 0.00 2.39
389 390 2.752807 GCGGGTGGGATGGGTATGT 61.753 63.158 0.00 0.00 0.00 2.29
390 391 1.919771 CGGGTGGGATGGGTATGTT 59.080 57.895 0.00 0.00 0.00 2.71
391 392 0.257616 CGGGTGGGATGGGTATGTTT 59.742 55.000 0.00 0.00 0.00 2.83
392 393 1.749286 CGGGTGGGATGGGTATGTTTC 60.749 57.143 0.00 0.00 0.00 2.78
393 394 1.286553 GGGTGGGATGGGTATGTTTCA 59.713 52.381 0.00 0.00 0.00 2.69
394 395 2.291930 GGGTGGGATGGGTATGTTTCAA 60.292 50.000 0.00 0.00 0.00 2.69
395 396 3.629796 GGGTGGGATGGGTATGTTTCAAT 60.630 47.826 0.00 0.00 0.00 2.57
396 397 4.030216 GGTGGGATGGGTATGTTTCAATT 58.970 43.478 0.00 0.00 0.00 2.32
397 398 4.141959 GGTGGGATGGGTATGTTTCAATTG 60.142 45.833 0.00 0.00 0.00 2.32
398 399 4.029520 TGGGATGGGTATGTTTCAATTGG 58.970 43.478 5.42 0.00 0.00 3.16
405 406 1.555967 ATGTTTCAATTGGACCCCGG 58.444 50.000 5.42 0.00 0.00 5.73
425 426 3.492829 CGGGGATTTTCTAGGCTACTCAC 60.493 52.174 0.00 0.00 0.00 3.51
438 439 3.301274 GCTACTCACTCTCCCTATTGGT 58.699 50.000 0.00 0.00 34.77 3.67
489 491 4.540824 GCAAAGGTCTCAAGTTTGACATC 58.459 43.478 7.73 0.00 33.78 3.06
575 589 9.886132 ACATATAAATAGTTTTCTCCACGAACT 57.114 29.630 0.00 0.00 37.40 3.01
579 593 6.937436 AATAGTTTTCTCCACGAACTTTGT 57.063 33.333 0.00 0.00 35.43 2.83
580 594 4.877323 AGTTTTCTCCACGAACTTTGTC 57.123 40.909 0.00 0.00 29.81 3.18
581 595 4.258543 AGTTTTCTCCACGAACTTTGTCA 58.741 39.130 0.00 0.00 29.81 3.58
582 596 4.094442 AGTTTTCTCCACGAACTTTGTCAC 59.906 41.667 0.00 0.00 29.81 3.67
583 597 3.536956 TTCTCCACGAACTTTGTCACT 57.463 42.857 0.00 0.00 0.00 3.41
584 598 4.659111 TTCTCCACGAACTTTGTCACTA 57.341 40.909 0.00 0.00 0.00 2.74
585 599 4.866508 TCTCCACGAACTTTGTCACTAT 57.133 40.909 0.00 0.00 0.00 2.12
586 600 5.209818 TCTCCACGAACTTTGTCACTATT 57.790 39.130 0.00 0.00 0.00 1.73
587 601 5.607477 TCTCCACGAACTTTGTCACTATTT 58.393 37.500 0.00 0.00 0.00 1.40
588 602 6.053005 TCTCCACGAACTTTGTCACTATTTT 58.947 36.000 0.00 0.00 0.00 1.82
589 603 6.018262 TCTCCACGAACTTTGTCACTATTTTG 60.018 38.462 0.00 0.00 0.00 2.44
590 604 5.818336 TCCACGAACTTTGTCACTATTTTGA 59.182 36.000 0.00 0.00 0.00 2.69
591 605 5.907391 CCACGAACTTTGTCACTATTTTGAC 59.093 40.000 0.00 0.00 45.34 3.18
592 606 6.238374 CCACGAACTTTGTCACTATTTTGACT 60.238 38.462 4.97 0.00 45.34 3.41
593 607 7.186804 CACGAACTTTGTCACTATTTTGACTT 58.813 34.615 4.97 0.00 45.34 3.01
594 608 8.332464 CACGAACTTTGTCACTATTTTGACTTA 58.668 33.333 4.97 0.00 45.34 2.24
595 609 8.885722 ACGAACTTTGTCACTATTTTGACTTAA 58.114 29.630 4.97 0.00 45.34 1.85
596 610 9.710979 CGAACTTTGTCACTATTTTGACTTAAA 57.289 29.630 4.97 0.00 45.34 1.52
629 643 6.564709 TGCATTATGAAATGGAGTAGATGC 57.435 37.500 0.00 0.00 42.39 3.91
641 655 9.658799 AAATGGAGTAGATGCATGTGTATATAC 57.341 33.333 2.46 5.89 39.36 1.47
642 656 8.601047 ATGGAGTAGATGCATGTGTATATACT 57.399 34.615 15.12 15.12 44.04 2.12
644 658 8.870116 TGGAGTAGATGCATGTGTATATACTTT 58.130 33.333 15.94 0.47 42.37 2.66
645 659 9.144747 GGAGTAGATGCATGTGTATATACTTTG 57.855 37.037 15.94 9.41 42.37 2.77
648 662 7.969536 AGATGCATGTGTATATACTTTGGTC 57.030 36.000 2.46 4.42 0.00 4.02
649 663 6.646653 AGATGCATGTGTATATACTTTGGTCG 59.353 38.462 2.46 0.00 0.00 4.79
650 664 5.053811 TGCATGTGTATATACTTTGGTCGG 58.946 41.667 13.89 0.00 0.00 4.79
651 665 5.054477 GCATGTGTATATACTTTGGTCGGT 58.946 41.667 13.89 0.00 0.00 4.69
652 666 5.050363 GCATGTGTATATACTTTGGTCGGTG 60.050 44.000 13.89 2.42 0.00 4.94
653 667 5.664294 TGTGTATATACTTTGGTCGGTGT 57.336 39.130 13.89 0.00 0.00 4.16
654 668 5.412640 TGTGTATATACTTTGGTCGGTGTG 58.587 41.667 13.89 0.00 0.00 3.82
655 669 4.807304 GTGTATATACTTTGGTCGGTGTGG 59.193 45.833 13.89 0.00 0.00 4.17
667 1005 2.193536 GGTGTGGCAGTGTGGGTTC 61.194 63.158 0.00 0.00 0.00 3.62
746 1088 2.909965 TGGCCAGTTTTGACCGCC 60.910 61.111 0.00 0.00 40.16 6.13
800 1142 1.279558 AGAGTGAGAGACAGTAGCCGA 59.720 52.381 0.00 0.00 31.63 5.54
831 1177 3.599285 GATCCCGACACAACGCCCA 62.599 63.158 0.00 0.00 0.00 5.36
994 1346 0.469144 GCCGGAGAGGAGAGGAGATT 60.469 60.000 5.05 0.00 45.00 2.40
995 1347 1.616159 CCGGAGAGGAGAGGAGATTC 58.384 60.000 0.00 0.00 45.00 2.52
1015 1367 2.892425 CGATGGCGAGGAAGGTGC 60.892 66.667 0.00 0.00 40.82 5.01
1403 1816 3.415237 GATCTCCATCGATCGCTGG 57.585 57.895 27.95 27.95 31.43 4.85
1404 1817 0.108898 GATCTCCATCGATCGCTGGG 60.109 60.000 31.48 23.14 32.69 4.45
1405 1818 2.164865 ATCTCCATCGATCGCTGGGC 62.165 60.000 31.48 0.00 32.69 5.36
1416 1829 2.897350 GCTGGGCGTGTATGCTCC 60.897 66.667 0.00 0.00 33.12 4.70
1417 1830 2.584064 CTGGGCGTGTATGCTCCA 59.416 61.111 0.00 0.65 33.12 3.86
1418 1831 1.146930 CTGGGCGTGTATGCTCCAT 59.853 57.895 6.71 0.00 35.56 3.41
1419 1832 1.153188 TGGGCGTGTATGCTCCATG 60.153 57.895 0.00 0.00 33.12 3.66
1420 1833 1.893808 GGGCGTGTATGCTCCATGG 60.894 63.158 4.97 4.97 34.52 3.66
1421 1834 1.146041 GGCGTGTATGCTCCATGGA 59.854 57.895 15.27 15.27 34.52 3.41
1422 1835 0.250467 GGCGTGTATGCTCCATGGAT 60.250 55.000 16.63 2.74 34.52 3.41
1482 2463 6.180472 TCTTTGGGTTACATGGAAAGAGATC 58.820 40.000 0.00 0.00 30.91 2.75
1548 3862 1.227205 GATCAGCGAGCAGTCAGGG 60.227 63.158 0.00 0.00 0.00 4.45
1566 3880 2.053277 GGAGGTGAGGGACGAGGAC 61.053 68.421 0.00 0.00 0.00 3.85
1626 3940 2.690497 CCTCTTCATCGTCAGCTTCCTA 59.310 50.000 0.00 0.00 0.00 2.94
1688 4002 1.554617 TCATCACACCACACGATCCAT 59.445 47.619 0.00 0.00 0.00 3.41
1690 4004 2.665649 TCACACCACACGATCCATAC 57.334 50.000 0.00 0.00 0.00 2.39
1704 4018 6.925718 CACGATCCATACATTCTACAGTCAAT 59.074 38.462 0.00 0.00 0.00 2.57
1841 4311 2.497138 CTCATCAACAGCTTCCACACA 58.503 47.619 0.00 0.00 0.00 3.72
1844 4314 0.813610 TCAACAGCTTCCACACACCG 60.814 55.000 0.00 0.00 0.00 4.94
1870 4340 1.086696 GCAAAGCTCGCCAAGTATGA 58.913 50.000 0.00 0.00 0.00 2.15
1871 4341 1.063174 GCAAAGCTCGCCAAGTATGAG 59.937 52.381 0.00 0.00 0.00 2.90
1873 4343 3.201290 CAAAGCTCGCCAAGTATGAGAT 58.799 45.455 0.00 0.00 31.31 2.75
1874 4344 4.371786 CAAAGCTCGCCAAGTATGAGATA 58.628 43.478 0.00 0.00 31.31 1.98
1876 4346 4.448537 AGCTCGCCAAGTATGAGATATC 57.551 45.455 0.00 0.00 31.31 1.63
1877 4347 3.119673 AGCTCGCCAAGTATGAGATATCG 60.120 47.826 0.00 0.00 31.31 2.92
1878 4348 3.119814 GCTCGCCAAGTATGAGATATCGA 60.120 47.826 0.00 0.00 31.31 3.59
1880 4350 5.236655 TCGCCAAGTATGAGATATCGATC 57.763 43.478 0.00 0.00 0.00 3.69
1882 4352 5.358160 TCGCCAAGTATGAGATATCGATCAT 59.642 40.000 0.00 11.12 39.44 2.45
1888 4358 7.258022 AGTATGAGATATCGATCATTCTCGG 57.742 40.000 19.67 0.00 37.92 4.63
1890 4360 6.765915 ATGAGATATCGATCATTCTCGGAA 57.234 37.500 19.67 9.49 37.92 4.30
1891 4361 5.944013 TGAGATATCGATCATTCTCGGAAC 58.056 41.667 19.67 5.60 37.92 3.62
1892 4362 5.707764 TGAGATATCGATCATTCTCGGAACT 59.292 40.000 19.67 0.25 37.92 3.01
1894 4364 6.385843 AGATATCGATCATTCTCGGAACTTG 58.614 40.000 0.00 0.00 39.13 3.16
1896 4366 2.094234 TCGATCATTCTCGGAACTTGCA 60.094 45.455 0.00 0.00 39.13 4.08
1898 4368 1.808411 TCATTCTCGGAACTTGCACC 58.192 50.000 0.00 0.00 0.00 5.01
1920 4400 5.128663 ACCCACTCATGCCAATTTAATTACC 59.871 40.000 0.00 0.00 0.00 2.85
1921 4401 5.280945 CCACTCATGCCAATTTAATTACCG 58.719 41.667 0.00 0.00 0.00 4.02
1926 4414 2.816689 GCCAATTTAATTACCGGTGGC 58.183 47.619 19.93 14.58 42.88 5.01
2133 4624 1.300620 TCGCGTTCCTTCCACACTG 60.301 57.895 5.77 0.00 0.00 3.66
2188 4679 4.875561 GCTAGCTAGCCTGGTAAATACT 57.124 45.455 31.67 0.00 43.39 2.12
2227 4718 4.576216 TGCAAGTCGCCTGAAAATTAAA 57.424 36.364 0.00 0.00 41.33 1.52
2249 4740 4.608073 TTTTTGAAAAGAAAAAGCGCCC 57.392 36.364 2.29 0.00 32.36 6.13
2250 4741 2.969628 TTGAAAAGAAAAAGCGCCCA 57.030 40.000 2.29 0.00 0.00 5.36
2252 4743 3.252974 TGAAAAGAAAAAGCGCCCAAA 57.747 38.095 2.29 0.00 0.00 3.28
2253 4744 3.600388 TGAAAAGAAAAAGCGCCCAAAA 58.400 36.364 2.29 0.00 0.00 2.44
2254 4745 4.195416 TGAAAAGAAAAAGCGCCCAAAAT 58.805 34.783 2.29 0.00 0.00 1.82
2255 4746 4.637977 TGAAAAGAAAAAGCGCCCAAAATT 59.362 33.333 2.29 0.00 0.00 1.82
2256 4747 5.124617 TGAAAAGAAAAAGCGCCCAAAATTT 59.875 32.000 2.29 0.00 0.00 1.82
2257 4748 5.574891 AAAGAAAAAGCGCCCAAAATTTT 57.425 30.435 2.29 0.00 0.00 1.82
2258 4749 4.550577 AGAAAAAGCGCCCAAAATTTTG 57.449 36.364 21.65 21.65 37.90 2.44
2277 4768 6.445357 TTTTGGACCAGTCAAACTTTAGAC 57.555 37.500 0.00 0.00 34.34 2.59
2337 4832 6.074648 AGAAGAGAATGAGTACAGATAGGGG 58.925 44.000 0.00 0.00 0.00 4.79
2338 4833 5.411103 AGAGAATGAGTACAGATAGGGGT 57.589 43.478 0.00 0.00 0.00 4.95
2339 4834 6.532119 AGAGAATGAGTACAGATAGGGGTA 57.468 41.667 0.00 0.00 0.00 3.69
2340 4835 6.308566 AGAGAATGAGTACAGATAGGGGTAC 58.691 44.000 0.00 0.00 40.06 3.34
2341 4836 6.027025 AGAATGAGTACAGATAGGGGTACA 57.973 41.667 0.00 0.00 41.74 2.90
2342 4837 6.441222 AGAATGAGTACAGATAGGGGTACAA 58.559 40.000 0.00 0.00 41.74 2.41
2358 4853 5.001232 GGGTACAAGTACAACACATGACAT 58.999 41.667 12.00 0.00 37.78 3.06
2369 4864 3.141398 ACACATGACATGAACACAGACC 58.859 45.455 22.19 0.00 0.00 3.85
2404 4899 0.035458 CCCGGAGCAGAAAGACAAGT 59.965 55.000 0.73 0.00 0.00 3.16
2413 4908 3.433615 GCAGAAAGACAAGTAATGCTCGT 59.566 43.478 0.00 0.00 0.00 4.18
2436 4931 4.062293 CCCGAACAGAAGATACAACACAA 58.938 43.478 0.00 0.00 0.00 3.33
2526 5023 2.122989 ACTGGGGACACCACGAGT 60.123 61.111 0.00 0.00 46.80 4.18
2649 5146 1.256812 CAACCGAGGGCCTTGAAAAT 58.743 50.000 22.99 1.71 0.00 1.82
2684 5181 2.816360 CGACATCCGTAGACGCCGA 61.816 63.158 0.00 0.00 38.18 5.54
2693 5190 3.012859 TAGACGCCGATGCTGCCAA 62.013 57.895 0.00 0.00 34.43 4.52
2697 5194 2.887360 GCCGATGCTGCCAACATT 59.113 55.556 0.00 0.00 33.53 2.71
2747 5244 0.465097 CGAGGCTGAGCAATCCCATT 60.465 55.000 6.82 0.00 0.00 3.16
2758 5255 0.398696 AATCCCATTGCCGCCGTATA 59.601 50.000 0.00 0.00 0.00 1.47
2769 5266 0.782384 CGCCGTATATGGAAACGAGC 59.218 55.000 15.58 1.59 41.55 5.03
2770 5267 0.782384 GCCGTATATGGAAACGAGCG 59.218 55.000 15.58 0.00 41.55 5.03
2806 5303 1.812571 GTTGATCGAAGCCACCATGTT 59.187 47.619 0.00 0.00 0.00 2.71
2807 5304 2.198827 TGATCGAAGCCACCATGTTT 57.801 45.000 0.00 0.00 0.00 2.83
2808 5305 2.513753 TGATCGAAGCCACCATGTTTT 58.486 42.857 0.00 0.00 0.00 2.43
2861 5361 3.319198 GGCACCTCCTCCGAACCA 61.319 66.667 0.00 0.00 0.00 3.67
2880 5381 4.360563 ACCAACGAACATTAGATCTAGCG 58.639 43.478 2.02 6.12 0.00 4.26
2972 5476 3.508840 GCAACGCCGGCAAGCTAT 61.509 61.111 28.98 1.60 0.00 2.97
3006 5510 2.758327 ATCCGAGCTACCGTGGCA 60.758 61.111 9.77 0.00 0.00 4.92
3185 5694 0.392595 CCTTGAGGGGCTTCGTAACC 60.393 60.000 0.00 0.00 0.00 2.85
3194 5703 1.430632 CTTCGTAACCGCCGCTAGA 59.569 57.895 0.00 0.00 0.00 2.43
3198 5707 1.675483 TCGTAACCGCCGCTAGAAATA 59.325 47.619 0.00 0.00 0.00 1.40
3204 5713 5.458041 AACCGCCGCTAGAAATATAGTTA 57.542 39.130 0.00 0.00 0.00 2.24
3218 5728 0.039256 TAGTTACGTTGCCTTCGCGT 60.039 50.000 5.77 0.00 41.86 6.01
3219 5729 1.154727 GTTACGTTGCCTTCGCGTG 60.155 57.895 5.77 0.00 39.31 5.34
3290 5819 4.953868 CGAACACCACCGCGACCA 62.954 66.667 8.23 0.00 0.00 4.02
3401 5930 1.421410 GCGACAGGAAGGTATGTGCG 61.421 60.000 0.00 0.00 0.00 5.34
3419 5948 3.461773 GCAGCGCTGGGAGGAGTA 61.462 66.667 36.47 0.00 0.00 2.59
3422 5951 3.461773 GCGCTGGGAGGAGTAGCA 61.462 66.667 0.00 0.00 37.29 3.49
3446 5975 0.385751 CGCCAGAGCTCGAGGATTTA 59.614 55.000 26.33 0.00 36.60 1.40
3460 5994 1.751349 GATTTAGGGACGCGGGGCTA 61.751 60.000 12.47 0.00 0.00 3.93
3476 6012 1.916777 CTAGGGTTGGGGGACGTGT 60.917 63.158 0.00 0.00 0.00 4.49
3477 6013 0.615544 CTAGGGTTGGGGGACGTGTA 60.616 60.000 0.00 0.00 0.00 2.90
3493 6029 3.536917 TAGGGCACGGATCTGGCG 61.537 66.667 6.47 0.00 37.59 5.69
3587 6123 4.760047 GTGGTGCGTCCTGGCGAT 62.760 66.667 13.37 0.00 37.07 4.58
3603 6139 1.150081 GATGGCTGGTGGATCTGGG 59.850 63.158 0.00 0.00 0.00 4.45
3606 6142 4.512914 GCTGGTGGATCTGGGGGC 62.513 72.222 0.00 0.00 0.00 5.80
3610 6146 3.171388 GTGGATCTGGGGGCGGAT 61.171 66.667 0.00 0.00 0.00 4.18
3611 6147 2.849162 TGGATCTGGGGGCGGATC 60.849 66.667 0.00 0.00 38.01 3.36
3612 6148 2.527875 GGATCTGGGGGCGGATCT 60.528 66.667 0.00 0.00 38.56 2.75
3613 6149 2.746359 GATCTGGGGGCGGATCTG 59.254 66.667 0.00 0.00 36.41 2.90
3614 6150 3.543536 GATCTGGGGGCGGATCTGC 62.544 68.421 18.73 18.73 36.41 4.26
3719 6287 4.208686 GAGGTCCTAGCGGCGGTG 62.209 72.222 23.33 11.47 0.00 4.94
3722 6290 4.509737 GTCCTAGCGGCGGTGGAC 62.510 72.222 29.98 29.98 41.52 4.02
3774 6342 4.016706 CGGGAGTGGGGCTTCGTT 62.017 66.667 0.00 0.00 0.00 3.85
3778 6346 0.955919 GGAGTGGGGCTTCGTTTCAG 60.956 60.000 0.00 0.00 0.00 3.02
3784 6352 0.790814 GGGCTTCGTTTCAGAACTCG 59.209 55.000 1.70 1.70 33.51 4.18
3792 6360 4.312443 TCGTTTCAGAACTCGGCTTTAAT 58.688 39.130 6.97 0.00 33.51 1.40
3800 6368 3.107642 ACTCGGCTTTAATATCCGTGG 57.892 47.619 13.39 9.31 43.35 4.94
3833 6410 5.353123 TGTCTCTGTGTTGTTTTAGGTTGTC 59.647 40.000 0.00 0.00 0.00 3.18
3852 6429 3.625764 TGTCTTTCTTTTTGACTGACCCG 59.374 43.478 0.00 0.00 0.00 5.28
3860 6437 4.695217 TTTTGACTGACCCGATATTTGC 57.305 40.909 0.00 0.00 0.00 3.68
3880 6457 2.876091 CGCCAGTCAATTCTCTAACGA 58.124 47.619 0.00 0.00 0.00 3.85
3921 6498 6.096987 AGTGTGACACAGACTTCTTCTTTCTA 59.903 38.462 18.95 0.00 34.24 2.10
3998 6612 6.423182 TGGGATTTGGGAGAGTGTAAATAAG 58.577 40.000 0.00 0.00 0.00 1.73
4160 6774 6.311735 TCTTAAAGGAAAAATACCAGCACCT 58.688 36.000 0.00 0.00 0.00 4.00
4162 6776 3.806949 AGGAAAAATACCAGCACCTCA 57.193 42.857 0.00 0.00 0.00 3.86
4175 6789 5.166398 CCAGCACCTCAAATTCATTCTTTC 58.834 41.667 0.00 0.00 0.00 2.62
4176 6790 5.279106 CCAGCACCTCAAATTCATTCTTTCA 60.279 40.000 0.00 0.00 0.00 2.69
4264 6878 7.015195 GGGTAATACCAATGCCACTAATTCATT 59.985 37.037 12.03 0.00 41.02 2.57
4269 6883 5.047377 ACCAATGCCACTAATTCATTCGTTT 60.047 36.000 0.00 0.00 0.00 3.60
4277 6891 9.997482 GCCACTAATTCATTCGTTTTTAGATTA 57.003 29.630 0.00 0.00 0.00 1.75
4331 6946 9.464248 GCTTATTCTTGCATATTTTGAAAAACG 57.536 29.630 0.00 0.00 0.00 3.60
4875 7924 7.719193 TGCAGGTACTAAATAATATGTGTGCAT 59.281 33.333 0.00 0.00 36.02 3.96
5075 9656 5.431179 AAGGTAATACCAAGGTCACGAAT 57.569 39.130 12.54 0.00 41.95 3.34
5076 9657 6.549433 AAGGTAATACCAAGGTCACGAATA 57.451 37.500 12.54 0.00 41.95 1.75
5077 9658 6.549433 AGGTAATACCAAGGTCACGAATAA 57.451 37.500 12.54 0.00 41.95 1.40
5080 9661 7.713942 AGGTAATACCAAGGTCACGAATAAATC 59.286 37.037 12.54 0.00 41.95 2.17
5081 9662 7.496591 GGTAATACCAAGGTCACGAATAAATCA 59.503 37.037 4.24 0.00 38.42 2.57
5211 10959 5.064452 ACATTTCTTTTGCGAAAATTGCACA 59.936 32.000 0.00 0.00 43.10 4.57
5217 10965 7.289395 TCTTTTGCGAAAATTGCACAATTATG 58.711 30.769 8.92 4.02 43.10 1.90
5280 11049 2.803956 GCGTGTACTGCAAAACTAGGAA 59.196 45.455 5.89 0.00 0.00 3.36
5331 11100 4.750098 AGTGACTTTGGAAGATGTGTTACG 59.250 41.667 0.00 0.00 0.00 3.18
5351 11120 1.154197 GGAGGAAAGTTGCACGGTAC 58.846 55.000 0.00 0.00 0.00 3.34
5352 11121 1.541670 GGAGGAAAGTTGCACGGTACA 60.542 52.381 0.00 0.00 0.00 2.90
5455 11227 2.663119 GACAAGTCAAATTTCATGCGGC 59.337 45.455 0.00 0.00 0.00 6.53
5579 11398 2.604174 GCCTGTGTACCGTGTGTGC 61.604 63.158 0.00 0.00 0.00 4.57
5595 11414 2.608546 GTGTGCACGTGTAGTTAACCAA 59.391 45.455 18.38 0.00 0.00 3.67
5600 11419 3.124636 GCACGTGTAGTTAACCAATGAGG 59.875 47.826 18.38 0.00 45.67 3.86
5609 11428 8.988060 TGTAGTTAACCAATGAGGATAATCAGA 58.012 33.333 0.88 0.00 41.22 3.27
5611 11430 8.915057 AGTTAACCAATGAGGATAATCAGATG 57.085 34.615 0.88 0.00 41.22 2.90
5612 11431 7.446625 AGTTAACCAATGAGGATAATCAGATGC 59.553 37.037 0.88 0.00 41.22 3.91
5613 11432 4.321718 ACCAATGAGGATAATCAGATGCG 58.678 43.478 0.00 0.00 41.22 4.73
5614 11433 4.202398 ACCAATGAGGATAATCAGATGCGT 60.202 41.667 0.00 0.00 41.22 5.24
5615 11434 4.391216 CCAATGAGGATAATCAGATGCGTC 59.609 45.833 0.00 0.00 41.22 5.19
5616 11435 4.879197 ATGAGGATAATCAGATGCGTCA 57.121 40.909 8.99 6.21 31.44 4.35
5617 11436 4.248691 TGAGGATAATCAGATGCGTCAG 57.751 45.455 8.99 0.00 0.00 3.51
5618 11437 3.006217 TGAGGATAATCAGATGCGTCAGG 59.994 47.826 8.99 0.00 0.00 3.86
5619 11438 2.072298 GGATAATCAGATGCGTCAGGC 58.928 52.381 8.99 0.00 43.96 4.85
5620 11439 2.289320 GGATAATCAGATGCGTCAGGCT 60.289 50.000 8.99 0.00 44.05 4.58
5621 11440 3.056536 GGATAATCAGATGCGTCAGGCTA 60.057 47.826 8.99 0.00 44.05 3.93
5622 11441 2.988010 AATCAGATGCGTCAGGCTAA 57.012 45.000 8.99 0.00 44.05 3.09
5623 11442 3.482156 AATCAGATGCGTCAGGCTAAT 57.518 42.857 8.99 0.00 44.05 1.73
5624 11443 2.988010 TCAGATGCGTCAGGCTAATT 57.012 45.000 8.99 0.00 44.05 1.40
5625 11444 2.554142 TCAGATGCGTCAGGCTAATTG 58.446 47.619 8.99 0.00 44.05 2.32
5626 11445 2.168313 TCAGATGCGTCAGGCTAATTGA 59.832 45.455 8.99 0.00 44.05 2.57
5627 11446 2.938451 CAGATGCGTCAGGCTAATTGAA 59.062 45.455 8.99 0.00 44.05 2.69
5628 11447 3.562973 CAGATGCGTCAGGCTAATTGAAT 59.437 43.478 8.99 0.00 44.05 2.57
5629 11448 4.036027 CAGATGCGTCAGGCTAATTGAATT 59.964 41.667 8.99 0.00 44.05 2.17
5630 11449 3.763097 TGCGTCAGGCTAATTGAATTG 57.237 42.857 0.00 0.00 44.05 2.32
5631 11450 3.342719 TGCGTCAGGCTAATTGAATTGA 58.657 40.909 0.00 0.00 44.05 2.57
5632 11451 3.947196 TGCGTCAGGCTAATTGAATTGAT 59.053 39.130 0.00 0.00 44.05 2.57
5633 11452 4.398988 TGCGTCAGGCTAATTGAATTGATT 59.601 37.500 0.00 0.00 44.05 2.57
5634 11453 5.588246 TGCGTCAGGCTAATTGAATTGATTA 59.412 36.000 0.00 0.00 44.05 1.75
5635 11454 6.094742 TGCGTCAGGCTAATTGAATTGATTAA 59.905 34.615 0.00 0.00 44.05 1.40
5636 11455 7.141363 GCGTCAGGCTAATTGAATTGATTAAT 58.859 34.615 0.00 0.00 39.11 1.40
5637 11456 7.649306 GCGTCAGGCTAATTGAATTGATTAATT 59.351 33.333 0.00 0.00 37.69 1.40
5652 11471 8.861033 ATTGATTAATTCACATACACATGCAC 57.139 30.769 0.00 0.00 35.39 4.57
5653 11472 6.485393 TGATTAATTCACATACACATGCACG 58.515 36.000 0.00 0.00 35.39 5.34
5654 11473 5.871465 TTAATTCACATACACATGCACGT 57.129 34.783 0.00 0.00 35.39 4.49
5655 11474 6.969828 TTAATTCACATACACATGCACGTA 57.030 33.333 0.00 0.00 35.39 3.57
5656 11475 5.871465 AATTCACATACACATGCACGTAA 57.129 34.783 0.00 0.00 35.39 3.18
5657 11476 6.435430 AATTCACATACACATGCACGTAAT 57.565 33.333 0.00 0.00 35.39 1.89
5658 11477 5.463499 TTCACATACACATGCACGTAATC 57.537 39.130 0.00 0.00 35.39 1.75
5659 11478 4.754322 TCACATACACATGCACGTAATCT 58.246 39.130 0.00 0.00 35.39 2.40
5660 11479 4.803613 TCACATACACATGCACGTAATCTC 59.196 41.667 0.00 0.00 35.39 2.75
5661 11480 4.025730 CACATACACATGCACGTAATCTCC 60.026 45.833 0.00 0.00 35.39 3.71
5662 11481 2.760634 ACACATGCACGTAATCTCCA 57.239 45.000 0.00 0.00 0.00 3.86
5663 11482 2.346803 ACACATGCACGTAATCTCCAC 58.653 47.619 0.00 0.00 0.00 4.02
5664 11483 2.028112 ACACATGCACGTAATCTCCACT 60.028 45.455 0.00 0.00 0.00 4.00
5665 11484 2.349580 CACATGCACGTAATCTCCACTG 59.650 50.000 0.00 0.00 0.00 3.66
5666 11485 2.233676 ACATGCACGTAATCTCCACTGA 59.766 45.455 0.00 0.00 0.00 3.41
5667 11486 2.363788 TGCACGTAATCTCCACTGAC 57.636 50.000 0.00 0.00 0.00 3.51
5668 11487 1.067142 TGCACGTAATCTCCACTGACC 60.067 52.381 0.00 0.00 0.00 4.02
5669 11488 1.739371 GCACGTAATCTCCACTGACCC 60.739 57.143 0.00 0.00 0.00 4.46
5670 11489 1.548719 CACGTAATCTCCACTGACCCA 59.451 52.381 0.00 0.00 0.00 4.51
5671 11490 2.028476 CACGTAATCTCCACTGACCCAA 60.028 50.000 0.00 0.00 0.00 4.12
5672 11491 2.635915 ACGTAATCTCCACTGACCCAAA 59.364 45.455 0.00 0.00 0.00 3.28
5673 11492 3.263425 ACGTAATCTCCACTGACCCAAAT 59.737 43.478 0.00 0.00 0.00 2.32
5674 11493 4.468510 ACGTAATCTCCACTGACCCAAATA 59.531 41.667 0.00 0.00 0.00 1.40
5675 11494 4.809426 CGTAATCTCCACTGACCCAAATAC 59.191 45.833 0.00 0.00 0.00 1.89
5676 11495 5.395324 CGTAATCTCCACTGACCCAAATACT 60.395 44.000 0.00 0.00 0.00 2.12
5677 11496 6.183360 CGTAATCTCCACTGACCCAAATACTA 60.183 42.308 0.00 0.00 0.00 1.82
5678 11497 5.878406 ATCTCCACTGACCCAAATACTAG 57.122 43.478 0.00 0.00 0.00 2.57
5679 11498 4.942944 TCTCCACTGACCCAAATACTAGA 58.057 43.478 0.00 0.00 0.00 2.43
5680 11499 5.338632 TCTCCACTGACCCAAATACTAGAA 58.661 41.667 0.00 0.00 0.00 2.10
5681 11500 5.964477 TCTCCACTGACCCAAATACTAGAAT 59.036 40.000 0.00 0.00 0.00 2.40
5682 11501 6.098409 TCTCCACTGACCCAAATACTAGAATC 59.902 42.308 0.00 0.00 0.00 2.52
5683 11502 5.724370 TCCACTGACCCAAATACTAGAATCA 59.276 40.000 0.00 0.00 0.00 2.57
5684 11503 6.214615 TCCACTGACCCAAATACTAGAATCAA 59.785 38.462 0.00 0.00 0.00 2.57
5685 11504 7.056635 CCACTGACCCAAATACTAGAATCAAT 58.943 38.462 0.00 0.00 0.00 2.57
5686 11505 7.227512 CCACTGACCCAAATACTAGAATCAATC 59.772 40.741 0.00 0.00 0.00 2.67
5687 11506 6.986817 ACTGACCCAAATACTAGAATCAATCG 59.013 38.462 0.00 0.00 0.00 3.34
5699 11518 2.540265 ATCAATCGCATGACTCCCTC 57.460 50.000 0.00 0.00 30.82 4.30
5709 11528 0.391597 TGACTCCCTCGTTGTTGGAC 59.608 55.000 0.00 0.00 0.00 4.02
5944 11774 2.525105 ACCCCTCTCTCTCTCTTGTC 57.475 55.000 0.00 0.00 0.00 3.18
5956 11787 6.169094 TCTCTCTCTTGTCAACATTTCATCC 58.831 40.000 0.00 0.00 0.00 3.51
5964 11795 3.058293 GTCAACATTTCATCCTCGTTGCA 60.058 43.478 0.00 0.00 37.47 4.08
6924 12809 1.734137 GAGCCTCATCCGCTTCGTA 59.266 57.895 0.00 0.00 36.48 3.43
7140 13025 0.669318 CGCCTCGCTGAAGTTAACCA 60.669 55.000 0.88 0.00 0.00 3.67
7284 13266 6.017687 CGATAGATGAGATGTTTGCATTGGAA 60.018 38.462 0.00 0.00 34.44 3.53
7291 13311 1.686052 TGTTTGCATTGGAACTGGGAC 59.314 47.619 0.00 0.00 0.00 4.46
7305 13325 2.560105 ACTGGGACGAGTAAAGTACCAC 59.440 50.000 0.00 0.00 46.98 4.16
7306 13326 2.559668 CTGGGACGAGTAAAGTACCACA 59.440 50.000 0.00 0.00 46.98 4.17
7307 13327 3.167485 TGGGACGAGTAAAGTACCACAT 58.833 45.455 0.00 0.00 46.98 3.21
7308 13328 3.579586 TGGGACGAGTAAAGTACCACATT 59.420 43.478 0.00 0.00 46.98 2.71
7309 13329 4.040706 TGGGACGAGTAAAGTACCACATTT 59.959 41.667 0.00 0.00 46.98 2.32
7356 13380 0.324275 ACTGACCTCTCTCCAGCCTC 60.324 60.000 0.00 0.00 0.00 4.70
7459 13491 5.295431 TGCATTTTCGACTAATTCAGGTG 57.705 39.130 0.00 0.00 0.00 4.00
7495 16678 0.678048 GGAGCCTAAACACCTGCCTG 60.678 60.000 0.00 0.00 0.00 4.85
7528 16711 4.451435 CGAGTAATGCTAGACCTATCGTGA 59.549 45.833 0.00 0.00 0.00 4.35
7548 16731 6.253298 TCGTGAATAGTTTTACGGGATTAACG 59.747 38.462 0.00 0.00 42.98 3.18
7559 16742 2.912967 CGGGATTAACGTAATCGATCCG 59.087 50.000 13.89 13.89 44.24 4.18
7560 16743 3.610114 CGGGATTAACGTAATCGATCCGT 60.610 47.826 15.01 15.01 44.24 4.69
7565 16748 1.671979 ACGTAATCGATCCGTCAGGA 58.328 50.000 15.01 0.00 45.00 3.86
7579 16762 3.243907 CCGTCAGGAGGAGAAATATGACC 60.244 52.174 0.00 0.00 41.02 4.02
7586 16769 5.017490 GGAGGAGAAATATGACCGGAGATA 58.983 45.833 9.46 3.77 0.00 1.98
7618 18551 2.477245 GGCCACCCCCTTGAAATATTT 58.523 47.619 0.00 0.00 0.00 1.40
7629 18708 6.923508 CCCCTTGAAATATTTTCGCTTTATCC 59.076 38.462 1.43 0.00 0.00 2.59
7703 18782 5.415701 CCTATGCTAACAAGAGGCAAAAAGA 59.584 40.000 0.00 0.00 39.46 2.52
7708 18787 6.264292 TGCTAACAAGAGGCAAAAAGATGTTA 59.736 34.615 0.00 0.00 32.79 2.41
7740 18820 6.542005 TGCATAAAGACATTCGATGTGGTAAT 59.458 34.615 5.41 0.00 45.03 1.89
7753 18833 7.383687 TCGATGTGGTAATCTTTTGTTCTAGT 58.616 34.615 0.00 0.00 0.00 2.57
7774 18854 6.458232 AGTGATGAGGTTACTAGCAACTAG 57.542 41.667 5.82 0.08 39.72 2.57
7775 18855 5.044558 GTGATGAGGTTACTAGCAACTAGC 58.955 45.833 5.82 0.00 46.19 3.42
7792 18872 2.495155 AGCACACACATTCATAGGCA 57.505 45.000 0.00 0.00 0.00 4.75
7797 18877 3.076621 ACACACATTCATAGGCACAGTG 58.923 45.455 0.00 0.00 0.00 3.66
7816 18896 7.564988 CACAGTGTAGCAAGTCTTAAACTAAC 58.435 38.462 0.00 0.00 37.17 2.34
7843 18923 4.652421 AGCATTGGGACATCAATTAAGCAT 59.348 37.500 0.00 0.00 39.30 3.79
7846 18926 6.421801 GCATTGGGACATCAATTAAGCATTAC 59.578 38.462 0.00 0.00 39.30 1.89
7848 18928 4.036262 TGGGACATCAATTAAGCATTACGC 59.964 41.667 0.00 0.00 42.91 4.42
7849 18929 8.586550 TTGGGACATCAATTAAGCATTACGCG 62.587 42.308 3.53 3.53 43.10 6.01
7866 18946 6.724694 TTACGCGGTACATTAAGAAACATT 57.275 33.333 12.47 0.00 0.00 2.71
7896 18976 5.180492 TGGCAGTACTAACATGCACTTAAAC 59.820 40.000 0.00 0.00 41.78 2.01
7901 18981 6.768861 AGTACTAACATGCACTTAAACCAACA 59.231 34.615 0.00 0.00 0.00 3.33
7911 18991 4.336993 CACTTAAACCAACAGGCACTAACA 59.663 41.667 0.00 0.00 36.02 2.41
7940 19020 3.670627 CGCCATTTCAACAAGTCTTAGGC 60.671 47.826 0.00 0.00 35.19 3.93
7950 19465 6.927381 TCAACAAGTCTTAGGCAGTACTAAAC 59.073 38.462 0.00 0.00 32.92 2.01
7963 19478 7.015195 AGGCAGTACTAAACAAAACATCCAAAT 59.985 33.333 0.00 0.00 0.00 2.32
8002 19685 2.069273 CCTCGTGCTTCTTACACTTGG 58.931 52.381 0.00 0.00 35.84 3.61
8039 19722 6.541278 ACGTCATTGATGTTGAAGATGATCAT 59.459 34.615 8.25 8.25 0.00 2.45
8060 19743 2.427453 TCTTGAAGCTATCGGGAGTCAC 59.573 50.000 0.00 0.00 0.00 3.67
8085 19768 1.122632 TGAAGGTCGCAAGGTACCCA 61.123 55.000 8.74 0.00 36.34 4.51
8088 19771 0.252197 AGGTCGCAAGGTACCCAATC 59.748 55.000 8.74 0.00 36.34 2.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 3.136077 AGATGCATGCATTAGAGTGAGGT 59.864 43.478 32.60 8.24 36.70 3.85
50 51 2.504681 CGCGCAAGAATGGTTGGC 60.505 61.111 8.75 0.00 43.02 4.52
57 58 2.625823 CCCAACACCGCGCAAGAAT 61.626 57.895 8.75 0.00 43.02 2.40
87 88 3.769844 TGCCTAGTACTCCCTCTTCAAAG 59.230 47.826 0.00 0.00 0.00 2.77
152 153 0.336737 AGTCTCGAAGTCCTCCCCAT 59.663 55.000 0.00 0.00 0.00 4.00
187 188 5.236478 CCTACTGGCTTATTTAACATCCACG 59.764 44.000 0.00 0.00 0.00 4.94
200 201 1.760192 GTCGTCTCCCTACTGGCTTA 58.240 55.000 0.00 0.00 0.00 3.09
263 264 1.264295 GTCGTGGACTAGGGAAAGGT 58.736 55.000 0.00 0.00 0.00 3.50
279 280 1.665679 CCACAATTGAAGGATCGGTCG 59.334 52.381 13.59 0.00 0.00 4.79
280 281 2.420022 CACCACAATTGAAGGATCGGTC 59.580 50.000 22.46 0.00 0.00 4.79
281 282 2.436417 CACCACAATTGAAGGATCGGT 58.564 47.619 22.46 10.29 0.00 4.69
282 283 1.745087 CCACCACAATTGAAGGATCGG 59.255 52.381 22.46 16.36 0.00 4.18
283 284 2.436417 ACCACCACAATTGAAGGATCG 58.564 47.619 22.46 13.47 0.00 3.69
292 293 3.761218 TCGATTGCAATACCACCACAATT 59.239 39.130 12.97 0.00 31.40 2.32
335 336 3.839323 ACATACCCATCCGACCCTATA 57.161 47.619 0.00 0.00 0.00 1.31
343 344 4.770795 AGAGAAAGAAACATACCCATCCG 58.229 43.478 0.00 0.00 0.00 4.18
366 367 1.910772 CCCATCCCACCCGCAAAAA 60.911 57.895 0.00 0.00 0.00 1.94
367 368 1.790635 TACCCATCCCACCCGCAAAA 61.791 55.000 0.00 0.00 0.00 2.44
368 369 1.576368 ATACCCATCCCACCCGCAAA 61.576 55.000 0.00 0.00 0.00 3.68
369 370 2.004120 ATACCCATCCCACCCGCAA 61.004 57.895 0.00 0.00 0.00 4.85
370 371 2.367648 ATACCCATCCCACCCGCA 60.368 61.111 0.00 0.00 0.00 5.69
371 372 2.113139 CATACCCATCCCACCCGC 59.887 66.667 0.00 0.00 0.00 6.13
372 373 0.257616 AAACATACCCATCCCACCCG 59.742 55.000 0.00 0.00 0.00 5.28
373 374 1.286553 TGAAACATACCCATCCCACCC 59.713 52.381 0.00 0.00 0.00 4.61
374 375 2.818751 TGAAACATACCCATCCCACC 57.181 50.000 0.00 0.00 0.00 4.61
375 376 4.141959 CCAATTGAAACATACCCATCCCAC 60.142 45.833 7.12 0.00 0.00 4.61
376 377 4.029520 CCAATTGAAACATACCCATCCCA 58.970 43.478 7.12 0.00 0.00 4.37
377 378 4.099419 GTCCAATTGAAACATACCCATCCC 59.901 45.833 7.12 0.00 0.00 3.85
378 379 4.099419 GGTCCAATTGAAACATACCCATCC 59.901 45.833 7.12 0.00 0.00 3.51
379 380 4.099419 GGGTCCAATTGAAACATACCCATC 59.901 45.833 7.12 0.00 43.77 3.51
380 381 4.030216 GGGTCCAATTGAAACATACCCAT 58.970 43.478 7.12 0.00 43.77 4.00
381 382 3.436243 GGGTCCAATTGAAACATACCCA 58.564 45.455 7.12 0.00 43.77 4.51
382 383 2.764010 GGGGTCCAATTGAAACATACCC 59.236 50.000 7.12 12.50 43.62 3.69
383 384 2.425668 CGGGGTCCAATTGAAACATACC 59.574 50.000 7.12 7.52 0.00 2.73
384 385 2.425668 CCGGGGTCCAATTGAAACATAC 59.574 50.000 7.12 0.04 0.00 2.39
385 386 2.621929 CCCGGGGTCCAATTGAAACATA 60.622 50.000 14.71 0.00 0.00 2.29
386 387 1.555967 CCGGGGTCCAATTGAAACAT 58.444 50.000 7.12 0.00 0.00 2.71
387 388 0.540830 CCCGGGGTCCAATTGAAACA 60.541 55.000 14.71 0.00 0.00 2.83
388 389 1.254975 CCCCGGGGTCCAATTGAAAC 61.255 60.000 33.25 4.72 0.00 2.78
389 390 1.077625 CCCCGGGGTCCAATTGAAA 59.922 57.895 33.25 0.00 0.00 2.69
390 391 1.218439 ATCCCCGGGGTCCAATTGAA 61.218 55.000 38.73 17.33 36.47 2.69
391 392 1.218439 AATCCCCGGGGTCCAATTGA 61.218 55.000 38.73 18.16 36.47 2.57
392 393 0.325203 AAATCCCCGGGGTCCAATTG 60.325 55.000 38.73 11.41 36.47 2.32
393 394 0.415830 AAAATCCCCGGGGTCCAATT 59.584 50.000 38.73 26.97 36.47 2.32
394 395 0.032515 GAAAATCCCCGGGGTCCAAT 60.033 55.000 38.73 22.56 36.47 3.16
395 396 1.143970 AGAAAATCCCCGGGGTCCAA 61.144 55.000 38.73 21.13 36.47 3.53
396 397 0.253254 TAGAAAATCCCCGGGGTCCA 60.253 55.000 38.73 21.56 36.47 4.02
397 398 0.472898 CTAGAAAATCCCCGGGGTCC 59.527 60.000 38.73 22.37 36.47 4.46
398 399 0.472898 CCTAGAAAATCCCCGGGGTC 59.527 60.000 38.73 27.96 36.47 4.46
405 406 4.651962 AGAGTGAGTAGCCTAGAAAATCCC 59.348 45.833 0.00 0.00 0.00 3.85
465 467 2.952310 GTCAAACTTGAGACCTTTGCCT 59.048 45.455 0.00 0.00 37.98 4.75
469 471 7.067496 TCTAGATGTCAAACTTGAGACCTTT 57.933 36.000 0.00 0.00 37.98 3.11
474 476 8.134202 TGGTATTCTAGATGTCAAACTTGAGA 57.866 34.615 0.00 0.00 37.98 3.27
477 479 8.553459 AGTTGGTATTCTAGATGTCAAACTTG 57.447 34.615 0.00 0.00 0.00 3.16
549 563 9.886132 AGTTCGTGGAGAAAACTATTTATATGT 57.114 29.630 0.00 0.00 41.10 2.29
553 567 9.063615 ACAAAGTTCGTGGAGAAAACTATTTAT 57.936 29.630 0.00 0.00 41.10 1.40
554 568 8.441312 ACAAAGTTCGTGGAGAAAACTATTTA 57.559 30.769 0.00 0.00 41.10 1.40
555 569 7.066525 TGACAAAGTTCGTGGAGAAAACTATTT 59.933 33.333 0.00 0.00 41.10 1.40
556 570 6.540914 TGACAAAGTTCGTGGAGAAAACTATT 59.459 34.615 0.00 0.00 41.10 1.73
557 571 6.018180 GTGACAAAGTTCGTGGAGAAAACTAT 60.018 38.462 0.00 0.00 41.10 2.12
558 572 5.292589 GTGACAAAGTTCGTGGAGAAAACTA 59.707 40.000 0.00 0.00 41.10 2.24
559 573 4.094442 GTGACAAAGTTCGTGGAGAAAACT 59.906 41.667 0.00 0.00 41.10 2.66
560 574 4.094442 AGTGACAAAGTTCGTGGAGAAAAC 59.906 41.667 0.00 0.00 41.10 2.43
561 575 4.258543 AGTGACAAAGTTCGTGGAGAAAA 58.741 39.130 0.00 0.00 41.10 2.29
562 576 3.869065 AGTGACAAAGTTCGTGGAGAAA 58.131 40.909 0.00 0.00 41.10 2.52
563 577 3.536956 AGTGACAAAGTTCGTGGAGAA 57.463 42.857 0.00 0.00 36.31 2.87
564 578 4.866508 ATAGTGACAAAGTTCGTGGAGA 57.133 40.909 0.00 0.00 0.00 3.71
565 579 5.924475 AAATAGTGACAAAGTTCGTGGAG 57.076 39.130 0.00 0.00 0.00 3.86
566 580 5.818336 TCAAAATAGTGACAAAGTTCGTGGA 59.182 36.000 0.00 0.00 0.00 4.02
567 581 5.907391 GTCAAAATAGTGACAAAGTTCGTGG 59.093 40.000 0.55 0.00 46.00 4.94
568 582 6.953091 GTCAAAATAGTGACAAAGTTCGTG 57.047 37.500 0.55 0.00 46.00 4.35
601 615 4.018490 ACTCCATTTCATAATGCAGTGCA 58.982 39.130 22.22 22.22 40.45 4.57
602 616 4.644103 ACTCCATTTCATAATGCAGTGC 57.356 40.909 8.58 8.58 40.45 4.40
603 617 7.582352 CATCTACTCCATTTCATAATGCAGTG 58.418 38.462 0.00 0.00 41.67 3.66
604 618 6.206243 GCATCTACTCCATTTCATAATGCAGT 59.794 38.462 0.00 0.00 43.49 4.40
605 619 6.206048 TGCATCTACTCCATTTCATAATGCAG 59.794 38.462 0.00 0.00 41.25 4.41
606 620 6.063404 TGCATCTACTCCATTTCATAATGCA 58.937 36.000 0.00 0.00 43.17 3.96
607 621 6.564709 TGCATCTACTCCATTTCATAATGC 57.435 37.500 0.00 0.00 39.87 3.56
608 622 8.021396 CACATGCATCTACTCCATTTCATAATG 58.979 37.037 0.00 0.00 40.70 1.90
609 623 7.722728 ACACATGCATCTACTCCATTTCATAAT 59.277 33.333 0.00 0.00 0.00 1.28
610 624 7.056006 ACACATGCATCTACTCCATTTCATAA 58.944 34.615 0.00 0.00 0.00 1.90
611 625 6.594744 ACACATGCATCTACTCCATTTCATA 58.405 36.000 0.00 0.00 0.00 2.15
612 626 5.443283 ACACATGCATCTACTCCATTTCAT 58.557 37.500 0.00 0.00 0.00 2.57
613 627 4.847198 ACACATGCATCTACTCCATTTCA 58.153 39.130 0.00 0.00 0.00 2.69
614 628 8.783833 ATATACACATGCATCTACTCCATTTC 57.216 34.615 0.00 0.00 0.00 2.17
615 629 9.658799 GTATATACACATGCATCTACTCCATTT 57.341 33.333 8.05 0.00 0.00 2.32
616 630 9.040259 AGTATATACACATGCATCTACTCCATT 57.960 33.333 15.18 0.00 0.00 3.16
617 631 8.601047 AGTATATACACATGCATCTACTCCAT 57.399 34.615 15.18 0.00 0.00 3.41
618 632 8.422577 AAGTATATACACATGCATCTACTCCA 57.577 34.615 15.18 0.00 0.00 3.86
619 633 9.144747 CAAAGTATATACACATGCATCTACTCC 57.855 37.037 15.18 0.00 0.00 3.85
620 634 9.144747 CCAAAGTATATACACATGCATCTACTC 57.855 37.037 15.18 0.00 0.00 2.59
621 635 8.651389 ACCAAAGTATATACACATGCATCTACT 58.349 33.333 15.18 0.00 0.00 2.57
622 636 8.833231 ACCAAAGTATATACACATGCATCTAC 57.167 34.615 15.18 0.00 0.00 2.59
623 637 7.812669 CGACCAAAGTATATACACATGCATCTA 59.187 37.037 15.18 0.00 0.00 1.98
624 638 6.646653 CGACCAAAGTATATACACATGCATCT 59.353 38.462 15.18 0.00 0.00 2.90
625 639 6.128553 CCGACCAAAGTATATACACATGCATC 60.129 42.308 15.18 9.19 0.00 3.91
626 640 5.700832 CCGACCAAAGTATATACACATGCAT 59.299 40.000 15.18 0.00 0.00 3.96
627 641 5.053811 CCGACCAAAGTATATACACATGCA 58.946 41.667 15.18 0.00 0.00 3.96
628 642 5.050363 CACCGACCAAAGTATATACACATGC 60.050 44.000 15.18 0.00 0.00 4.06
629 643 6.019075 CACACCGACCAAAGTATATACACATG 60.019 42.308 15.18 9.86 0.00 3.21
641 655 1.525995 ACTGCCACACCGACCAAAG 60.526 57.895 0.00 0.00 0.00 2.77
642 656 1.821759 CACTGCCACACCGACCAAA 60.822 57.895 0.00 0.00 0.00 3.28
644 658 3.475494 ACACTGCCACACCGACCA 61.475 61.111 0.00 0.00 0.00 4.02
645 659 2.972505 CACACTGCCACACCGACC 60.973 66.667 0.00 0.00 0.00 4.79
648 662 4.562425 ACCCACACTGCCACACCG 62.562 66.667 0.00 0.00 0.00 4.94
649 663 2.123897 AACCCACACTGCCACACC 60.124 61.111 0.00 0.00 0.00 4.16
650 664 2.193536 GGAACCCACACTGCCACAC 61.194 63.158 0.00 0.00 0.00 3.82
651 665 2.194597 GGAACCCACACTGCCACA 59.805 61.111 0.00 0.00 0.00 4.17
652 666 2.951475 TTCGGAACCCACACTGCCAC 62.951 60.000 0.00 0.00 0.00 5.01
653 667 2.747443 TTCGGAACCCACACTGCCA 61.747 57.895 0.00 0.00 0.00 4.92
654 668 2.112297 TTCGGAACCCACACTGCC 59.888 61.111 0.00 0.00 0.00 4.85
655 669 2.604174 CGTTCGGAACCCACACTGC 61.604 63.158 14.83 0.00 0.00 4.40
746 1088 1.065928 CCCGCGAAGGTAGCACTAG 59.934 63.158 8.23 0.00 38.74 2.57
800 1142 4.504112 GGATCGATCCGGGTCTCT 57.496 61.111 27.93 0.00 37.19 3.10
994 1346 1.218047 CCTTCCTCGCCATCGTTGA 59.782 57.895 0.00 0.00 36.96 3.18
995 1347 1.079127 ACCTTCCTCGCCATCGTTG 60.079 57.895 0.00 0.00 36.96 4.10
1015 1367 0.547075 TCCTCGTACTCCTCCTCCTG 59.453 60.000 0.00 0.00 0.00 3.86
1399 1812 2.897350 GGAGCATACACGCCCAGC 60.897 66.667 0.00 0.00 0.00 4.85
1400 1813 1.146930 ATGGAGCATACACGCCCAG 59.853 57.895 0.00 0.00 36.22 4.45
1402 1815 1.893808 CCATGGAGCATACACGCCC 60.894 63.158 5.56 0.00 0.00 6.13
1403 1816 0.250467 ATCCATGGAGCATACACGCC 60.250 55.000 21.33 0.00 0.00 5.68
1404 1817 0.870393 CATCCATGGAGCATACACGC 59.130 55.000 21.33 0.00 0.00 5.34
1416 1829 3.067040 TGAATGCAAACGATCCATCCATG 59.933 43.478 0.00 0.00 0.00 3.66
1417 1830 3.067180 GTGAATGCAAACGATCCATCCAT 59.933 43.478 0.00 0.00 0.00 3.41
1418 1831 2.423185 GTGAATGCAAACGATCCATCCA 59.577 45.455 0.00 0.00 0.00 3.41
1419 1832 2.423185 TGTGAATGCAAACGATCCATCC 59.577 45.455 0.00 0.00 0.00 3.51
1420 1833 3.763097 TGTGAATGCAAACGATCCATC 57.237 42.857 0.00 0.00 0.00 3.51
1421 1834 3.507233 ACTTGTGAATGCAAACGATCCAT 59.493 39.130 0.00 0.00 0.00 3.41
1422 1835 2.884012 ACTTGTGAATGCAAACGATCCA 59.116 40.909 0.00 0.00 0.00 3.41
1548 3862 2.053277 GTCCTCGTCCCTCACCTCC 61.053 68.421 0.00 0.00 0.00 4.30
1566 3880 1.318158 GGCTGGGGTTCTTGATGCTG 61.318 60.000 0.00 0.00 0.00 4.41
1590 3904 1.727062 AGAGGAAGCCGATCATCCAT 58.273 50.000 0.00 0.00 35.06 3.41
1626 3940 2.035940 ACGACGGAGAAGAGCCCT 59.964 61.111 0.00 0.00 0.00 5.19
1727 4042 4.302455 CAAACGATTGGCCATGTTTAACA 58.698 39.130 23.03 0.00 33.53 2.41
1859 4329 4.986622 TGATCGATATCTCATACTTGGCG 58.013 43.478 0.00 0.00 32.93 5.69
1870 4340 6.385843 CAAGTTCCGAGAATGATCGATATCT 58.614 40.000 0.00 2.47 45.56 1.98
1871 4341 5.061560 GCAAGTTCCGAGAATGATCGATATC 59.938 44.000 0.00 0.00 45.56 1.63
1873 4343 4.202111 TGCAAGTTCCGAGAATGATCGATA 60.202 41.667 0.00 0.00 45.56 2.92
1874 4344 3.126831 GCAAGTTCCGAGAATGATCGAT 58.873 45.455 0.00 0.00 45.56 3.59
1876 4346 2.029728 GTGCAAGTTCCGAGAATGATCG 59.970 50.000 0.00 0.00 42.36 3.69
1877 4347 2.352960 GGTGCAAGTTCCGAGAATGATC 59.647 50.000 0.00 0.00 0.00 2.92
1878 4348 2.359900 GGTGCAAGTTCCGAGAATGAT 58.640 47.619 0.00 0.00 0.00 2.45
1880 4350 0.804989 GGGTGCAAGTTCCGAGAATG 59.195 55.000 0.00 0.00 0.00 2.67
1882 4352 0.534203 GTGGGTGCAAGTTCCGAGAA 60.534 55.000 0.00 0.00 0.00 2.87
1888 4358 0.242017 GCATGAGTGGGTGCAAGTTC 59.758 55.000 0.00 0.00 40.94 3.01
1890 4360 1.604593 GGCATGAGTGGGTGCAAGT 60.605 57.895 0.00 0.00 43.00 3.16
1891 4361 1.180456 TTGGCATGAGTGGGTGCAAG 61.180 55.000 0.00 0.00 43.00 4.01
1892 4362 0.542467 ATTGGCATGAGTGGGTGCAA 60.542 50.000 0.00 0.00 43.00 4.08
1894 4364 0.609662 AAATTGGCATGAGTGGGTGC 59.390 50.000 0.00 0.00 40.55 5.01
1896 4366 5.128663 GGTAATTAAATTGGCATGAGTGGGT 59.871 40.000 0.00 0.00 0.00 4.51
1898 4368 5.280945 CGGTAATTAAATTGGCATGAGTGG 58.719 41.667 0.00 0.00 0.00 4.00
1920 4400 3.314331 AGTCCAGTCCAGCCACCG 61.314 66.667 0.00 0.00 0.00 4.94
1921 4401 2.348998 CAGTCCAGTCCAGCCACC 59.651 66.667 0.00 0.00 0.00 4.61
1926 4414 0.542938 TCCAGTCCAGTCCAGTCCAG 60.543 60.000 0.00 0.00 0.00 3.86
2052 4543 1.529744 AGGTGGGGAAGGAACTGAAA 58.470 50.000 0.00 0.00 40.86 2.69
2133 4624 6.361748 GTGAAAAGTTGCTGACATTTCTGATC 59.638 38.462 16.53 0.00 43.11 2.92
2188 4679 7.201522 CGACTTGCATATAGCTAAAGTGAACAA 60.202 37.037 11.55 3.89 45.94 2.83
2206 4697 6.481644 AAAATTTAATTTTCAGGCGACTTGCA 59.518 30.769 9.58 0.00 41.12 4.08
2227 4718 4.637977 TGGGCGCTTTTTCTTTTCAAAAAT 59.362 33.333 7.64 0.00 35.27 1.82
2249 4740 6.983474 AAGTTTGACTGGTCCAAAATTTTG 57.017 33.333 21.65 21.65 38.22 2.44
2250 4741 8.536175 TCTAAAGTTTGACTGGTCCAAAATTTT 58.464 29.630 15.63 10.88 44.22 1.82
2252 4743 7.417456 GGTCTAAAGTTTGACTGGTCCAAAATT 60.417 37.037 13.98 0.00 41.58 1.82
2253 4744 6.040504 GGTCTAAAGTTTGACTGGTCCAAAAT 59.959 38.462 13.98 0.00 35.57 1.82
2254 4745 5.358725 GGTCTAAAGTTTGACTGGTCCAAAA 59.641 40.000 13.98 0.00 35.57 2.44
2255 4746 4.885325 GGTCTAAAGTTTGACTGGTCCAAA 59.115 41.667 13.98 0.00 34.18 3.28
2256 4747 4.457466 GGTCTAAAGTTTGACTGGTCCAA 58.543 43.478 13.98 0.00 34.18 3.53
2257 4748 3.493699 CGGTCTAAAGTTTGACTGGTCCA 60.494 47.826 14.37 0.00 36.22 4.02
2258 4749 3.064931 CGGTCTAAAGTTTGACTGGTCC 58.935 50.000 14.37 0.00 36.22 4.46
2259 4750 3.725490 ACGGTCTAAAGTTTGACTGGTC 58.275 45.455 21.04 0.00 41.52 4.02
2260 4751 3.832615 ACGGTCTAAAGTTTGACTGGT 57.167 42.857 21.04 14.53 41.52 4.00
2261 4752 4.124238 TCAACGGTCTAAAGTTTGACTGG 58.876 43.478 21.04 14.14 41.52 4.00
2262 4753 5.924475 ATCAACGGTCTAAAGTTTGACTG 57.076 39.130 17.96 17.96 42.45 3.51
2263 4754 6.540914 TGAAATCAACGGTCTAAAGTTTGACT 59.459 34.615 13.98 0.00 34.18 3.41
2264 4755 6.721321 TGAAATCAACGGTCTAAAGTTTGAC 58.279 36.000 0.00 4.27 33.19 3.18
2265 4756 6.512741 GCTGAAATCAACGGTCTAAAGTTTGA 60.513 38.462 0.00 0.00 0.00 2.69
2266 4757 5.625311 GCTGAAATCAACGGTCTAAAGTTTG 59.375 40.000 0.00 0.00 0.00 2.93
2277 4768 7.873739 AAAATCTTAAAGCTGAAATCAACGG 57.126 32.000 0.00 0.00 0.00 4.44
2337 4832 6.779115 TCATGTCATGTGTTGTACTTGTAC 57.221 37.500 12.54 4.14 36.23 2.90
2338 4833 6.763610 TGTTCATGTCATGTGTTGTACTTGTA 59.236 34.615 12.54 0.00 36.23 2.41
2339 4834 5.588246 TGTTCATGTCATGTGTTGTACTTGT 59.412 36.000 12.54 0.00 36.23 3.16
2340 4835 5.909054 GTGTTCATGTCATGTGTTGTACTTG 59.091 40.000 12.54 0.00 36.16 3.16
2341 4836 5.588246 TGTGTTCATGTCATGTGTTGTACTT 59.412 36.000 12.54 0.00 0.00 2.24
2342 4837 5.122519 TGTGTTCATGTCATGTGTTGTACT 58.877 37.500 12.54 0.00 0.00 2.73
2358 4853 0.107643 TTCATGCCGGTCTGTGTTCA 59.892 50.000 1.90 0.00 0.00 3.18
2413 4908 3.322541 TGTGTTGTATCTTCTGTTCGGGA 59.677 43.478 0.00 0.00 0.00 5.14
2436 4931 3.117436 TGTTTGGGCTTGGTAGGTTTAGT 60.117 43.478 0.00 0.00 0.00 2.24
2526 5023 0.036483 TGAAGGCGCTATGTTGCTCA 60.036 50.000 7.64 0.00 0.00 4.26
2533 5030 2.315925 TCCTTCTTGAAGGCGCTATG 57.684 50.000 21.16 0.51 39.80 2.23
2693 5190 1.526575 CCTGCTCGGTTTGCCAATGT 61.527 55.000 0.00 0.00 34.09 2.71
2697 5194 2.424842 AATCCCTGCTCGGTTTGCCA 62.425 55.000 0.00 0.00 34.09 4.92
2747 5244 0.876777 CGTTTCCATATACGGCGGCA 60.877 55.000 13.24 0.00 34.30 5.69
2758 5255 0.179073 CCTCATCCGCTCGTTTCCAT 60.179 55.000 0.00 0.00 0.00 3.41
2769 5266 1.402968 CAACATTGGCTTCCTCATCCG 59.597 52.381 0.00 0.00 0.00 4.18
2770 5267 2.726821 TCAACATTGGCTTCCTCATCC 58.273 47.619 0.00 0.00 0.00 3.51
2806 5303 1.909287 GCCCGCAAACCCCCTTAAA 60.909 57.895 0.00 0.00 0.00 1.52
2807 5304 2.283316 GCCCGCAAACCCCCTTAA 60.283 61.111 0.00 0.00 0.00 1.85
2808 5305 3.261677 AGCCCGCAAACCCCCTTA 61.262 61.111 0.00 0.00 0.00 2.69
2861 5361 6.255887 CCTTTTCGCTAGATCTAATGTTCGTT 59.744 38.462 3.57 0.00 0.00 3.85
2880 5381 1.889170 CACCTCAAAGCCTCCCTTTTC 59.111 52.381 0.00 0.00 41.75 2.29
2954 5458 4.998400 TAGCTTGCCGGCGTTGCA 62.998 61.111 30.07 18.09 37.29 4.08
2972 5476 1.305297 ATCTGCGTCCCTCCAGTCA 60.305 57.895 0.00 0.00 0.00 3.41
3042 5546 1.654220 CCAACAGTTGCGTCCCTTG 59.346 57.895 7.88 0.00 0.00 3.61
3154 5663 0.745468 CCTCAAGGCGGGTACTACTC 59.255 60.000 0.00 0.00 0.00 2.59
3155 5664 0.686769 CCCTCAAGGCGGGTACTACT 60.687 60.000 0.00 0.00 36.91 2.57
3156 5665 1.683418 CCCCTCAAGGCGGGTACTAC 61.683 65.000 0.00 0.00 40.24 2.73
3157 5666 1.382146 CCCCTCAAGGCGGGTACTA 60.382 63.158 0.00 0.00 40.24 1.82
3182 5691 4.332428 AACTATATTTCTAGCGGCGGTT 57.668 40.909 19.60 0.05 0.00 4.44
3185 5694 4.470462 ACGTAACTATATTTCTAGCGGCG 58.530 43.478 0.51 0.51 0.00 6.46
3194 5703 4.026310 CGCGAAGGCAACGTAACTATATTT 60.026 41.667 0.00 0.00 46.39 1.40
3198 5707 1.274596 CGCGAAGGCAACGTAACTAT 58.725 50.000 0.00 0.00 46.39 2.12
3204 5713 3.636043 CACACGCGAAGGCAACGT 61.636 61.111 15.93 0.00 46.39 3.99
3293 5822 3.645660 TTGGGTGCGGGATCTGCA 61.646 61.111 8.76 8.76 40.70 4.41
3390 5919 2.819595 CGCTGCCGCACATACCTT 60.820 61.111 0.00 0.00 35.30 3.50
3460 5994 1.916777 CTACACGTCCCCCAACCCT 60.917 63.158 0.00 0.00 0.00 4.34
3476 6012 3.536917 CGCCAGATCCGTGCCCTA 61.537 66.667 0.00 0.00 0.00 3.53
3523 6059 3.058160 GAGGGACCGACCGACGAA 61.058 66.667 0.00 0.00 45.77 3.85
3581 6117 3.405093 GATCCACCAGCCATCGCCA 62.405 63.158 0.00 0.00 34.57 5.69
3587 6123 3.016971 CCCCAGATCCACCAGCCA 61.017 66.667 0.00 0.00 0.00 4.75
3619 6155 4.113815 TTCCCGGGATGCTGGCAG 62.114 66.667 27.48 10.94 0.00 4.85
3702 6270 4.208686 CACCGCCGCTAGGACCTC 62.209 72.222 0.00 0.00 41.02 3.85
3726 6294 4.612412 TGGCGACACGGTGGGAAC 62.612 66.667 13.48 0.91 33.40 3.62
3727 6295 4.308458 CTGGCGACACGGTGGGAA 62.308 66.667 13.48 0.00 35.60 3.97
3729 6297 4.742201 CTCTGGCGACACGGTGGG 62.742 72.222 13.48 5.12 35.60 4.61
3730 6298 4.742201 CCTCTGGCGACACGGTGG 62.742 72.222 13.48 0.00 35.60 4.61
3731 6299 3.633094 CTCCTCTGGCGACACGGTG 62.633 68.421 6.58 6.58 35.60 4.94
3732 6300 3.374402 CTCCTCTGGCGACACGGT 61.374 66.667 0.00 0.00 35.60 4.83
3733 6301 4.135153 CCTCCTCTGGCGACACGG 62.135 72.222 0.00 0.00 35.60 4.94
3784 6352 3.560068 CACAGACCACGGATATTAAAGCC 59.440 47.826 0.00 0.00 0.00 4.35
3792 6360 2.631062 AGACAAACACAGACCACGGATA 59.369 45.455 0.00 0.00 0.00 2.59
3800 6368 3.684788 ACAACACAGAGACAAACACAGAC 59.315 43.478 0.00 0.00 0.00 3.51
3833 6410 6.743575 ATATCGGGTCAGTCAAAAAGAAAG 57.256 37.500 0.00 0.00 0.00 2.62
3852 6429 4.274459 AGAGAATTGACTGGCGCAAATATC 59.726 41.667 10.83 0.00 0.00 1.63
3860 6437 2.876091 TCGTTAGAGAATTGACTGGCG 58.124 47.619 0.00 0.00 0.00 5.69
3880 6457 0.974010 CACTGGAATGGGCATTGGCT 60.974 55.000 10.31 0.00 40.87 4.75
4145 6759 6.418057 TGAATTTGAGGTGCTGGTATTTTT 57.582 33.333 0.00 0.00 0.00 1.94
4155 6769 7.765307 TCTATGAAAGAATGAATTTGAGGTGC 58.235 34.615 0.00 0.00 0.00 5.01
4229 6843 9.523168 GTGGCATTGGTATTACCCTTAATATAA 57.477 33.333 10.37 0.00 37.50 0.98
4232 6846 7.156694 AGTGGCATTGGTATTACCCTTAATA 57.843 36.000 10.37 0.00 37.50 0.98
4784 7422 6.721704 AAGAAGGAATGAATTAGGGCATTC 57.278 37.500 0.00 0.00 45.94 2.67
4924 7973 8.009409 GCACTAAAATTGCACCTTTTGAAATAC 58.991 33.333 13.76 0.00 39.93 1.89
5051 9632 5.231702 TCGTGACCTTGGTATTACCTTTT 57.768 39.130 13.90 0.00 39.58 2.27
5185 9864 6.468637 GTGCAATTTTCGCAAAAGAAATGTTT 59.531 30.769 0.00 0.00 41.97 2.83
5237 10985 6.194463 CGCAAGTCACAGTAATGGATTATTG 58.806 40.000 0.00 1.48 36.43 1.90
5314 11083 3.558321 CCTCCCGTAACACATCTTCCAAA 60.558 47.826 0.00 0.00 0.00 3.28
5331 11100 0.035739 TACCGTGCAACTTTCCTCCC 59.964 55.000 0.00 0.00 31.75 4.30
5455 11227 4.197750 AGCTCTTGGAGAATTGCATACAG 58.802 43.478 0.00 0.00 0.00 2.74
5572 11391 2.033492 GGTTAACTACACGTGCACACAC 60.033 50.000 17.22 5.66 43.76 3.82
5579 11398 4.562082 TCCTCATTGGTTAACTACACGTG 58.438 43.478 15.48 15.48 37.07 4.49
5595 11414 4.322574 CCTGACGCATCTGATTATCCTCAT 60.323 45.833 0.00 0.00 0.00 2.90
5600 11419 3.037431 AGCCTGACGCATCTGATTATC 57.963 47.619 0.00 0.00 41.38 1.75
5609 11428 3.947196 TCAATTCAATTAGCCTGACGCAT 59.053 39.130 0.00 0.00 41.38 4.73
5610 11429 3.342719 TCAATTCAATTAGCCTGACGCA 58.657 40.909 0.00 0.00 41.38 5.24
5611 11430 4.558538 ATCAATTCAATTAGCCTGACGC 57.441 40.909 0.00 0.00 37.98 5.19
5612 11431 9.173939 GAATTAATCAATTCAATTAGCCTGACG 57.826 33.333 0.00 0.00 46.29 4.35
5624 11443 9.518906 GCATGTGTATGTGAATTAATCAATTCA 57.481 29.630 0.00 0.00 46.52 2.57
5625 11444 9.518906 TGCATGTGTATGTGAATTAATCAATTC 57.481 29.630 0.00 0.00 41.01 2.17
5626 11445 9.304731 GTGCATGTGTATGTGAATTAATCAATT 57.695 29.630 0.00 0.00 40.50 2.32
5627 11446 7.644945 CGTGCATGTGTATGTGAATTAATCAAT 59.355 33.333 0.00 0.00 40.50 2.57
5628 11447 6.966066 CGTGCATGTGTATGTGAATTAATCAA 59.034 34.615 0.00 0.00 40.50 2.57
5629 11448 6.093357 ACGTGCATGTGTATGTGAATTAATCA 59.907 34.615 11.65 0.00 36.65 2.57
5630 11449 6.486248 ACGTGCATGTGTATGTGAATTAATC 58.514 36.000 11.65 0.00 36.65 1.75
5631 11450 6.435430 ACGTGCATGTGTATGTGAATTAAT 57.565 33.333 11.65 0.00 36.65 1.40
5632 11451 5.871465 ACGTGCATGTGTATGTGAATTAA 57.129 34.783 11.65 0.00 36.65 1.40
5633 11452 6.969828 TTACGTGCATGTGTATGTGAATTA 57.030 33.333 21.92 0.00 36.65 1.40
5634 11453 5.871465 TTACGTGCATGTGTATGTGAATT 57.129 34.783 21.92 0.00 36.65 2.17
5635 11454 5.817296 AGATTACGTGCATGTGTATGTGAAT 59.183 36.000 21.92 10.90 36.65 2.57
5636 11455 5.175127 AGATTACGTGCATGTGTATGTGAA 58.825 37.500 21.92 6.23 36.65 3.18
5637 11456 4.754322 AGATTACGTGCATGTGTATGTGA 58.246 39.130 21.92 0.00 36.65 3.58
5638 11457 4.025730 GGAGATTACGTGCATGTGTATGTG 60.026 45.833 21.92 0.00 36.65 3.21
5639 11458 4.119862 GGAGATTACGTGCATGTGTATGT 58.880 43.478 21.92 12.67 36.65 2.29
5640 11459 4.025730 GTGGAGATTACGTGCATGTGTATG 60.026 45.833 21.92 0.00 37.36 2.39
5641 11460 4.119862 GTGGAGATTACGTGCATGTGTAT 58.880 43.478 21.92 14.10 0.00 2.29
5642 11461 3.194755 AGTGGAGATTACGTGCATGTGTA 59.805 43.478 21.92 9.80 0.00 2.90
5643 11462 2.028112 AGTGGAGATTACGTGCATGTGT 60.028 45.455 21.92 10.03 0.00 3.72
5644 11463 2.349580 CAGTGGAGATTACGTGCATGTG 59.650 50.000 21.92 1.66 0.00 3.21
5645 11464 2.233676 TCAGTGGAGATTACGTGCATGT 59.766 45.455 17.19 17.19 0.00 3.21
5646 11465 2.604914 GTCAGTGGAGATTACGTGCATG 59.395 50.000 3.82 3.82 0.00 4.06
5647 11466 2.418746 GGTCAGTGGAGATTACGTGCAT 60.419 50.000 0.00 0.00 0.00 3.96
5648 11467 1.067142 GGTCAGTGGAGATTACGTGCA 60.067 52.381 0.00 0.00 0.00 4.57
5649 11468 1.641577 GGTCAGTGGAGATTACGTGC 58.358 55.000 0.00 0.00 0.00 5.34
5650 11469 1.548719 TGGGTCAGTGGAGATTACGTG 59.451 52.381 0.00 0.00 0.00 4.49
5651 11470 1.933021 TGGGTCAGTGGAGATTACGT 58.067 50.000 0.00 0.00 0.00 3.57
5652 11471 3.328382 TTTGGGTCAGTGGAGATTACG 57.672 47.619 0.00 0.00 0.00 3.18
5653 11472 5.990668 AGTATTTGGGTCAGTGGAGATTAC 58.009 41.667 0.00 0.00 0.00 1.89
5654 11473 7.130099 TCTAGTATTTGGGTCAGTGGAGATTA 58.870 38.462 0.00 0.00 0.00 1.75
5655 11474 5.964477 TCTAGTATTTGGGTCAGTGGAGATT 59.036 40.000 0.00 0.00 0.00 2.40
5656 11475 5.529289 TCTAGTATTTGGGTCAGTGGAGAT 58.471 41.667 0.00 0.00 0.00 2.75
5657 11476 4.942944 TCTAGTATTTGGGTCAGTGGAGA 58.057 43.478 0.00 0.00 0.00 3.71
5658 11477 5.677319 TTCTAGTATTTGGGTCAGTGGAG 57.323 43.478 0.00 0.00 0.00 3.86
5659 11478 5.724370 TGATTCTAGTATTTGGGTCAGTGGA 59.276 40.000 0.00 0.00 0.00 4.02
5660 11479 5.989477 TGATTCTAGTATTTGGGTCAGTGG 58.011 41.667 0.00 0.00 0.00 4.00
5661 11480 7.042456 CGATTGATTCTAGTATTTGGGTCAGTG 60.042 40.741 0.00 0.00 0.00 3.66
5662 11481 6.986817 CGATTGATTCTAGTATTTGGGTCAGT 59.013 38.462 0.00 0.00 0.00 3.41
5663 11482 6.073548 GCGATTGATTCTAGTATTTGGGTCAG 60.074 42.308 0.00 0.00 0.00 3.51
5664 11483 5.758296 GCGATTGATTCTAGTATTTGGGTCA 59.242 40.000 0.00 0.00 0.00 4.02
5665 11484 5.758296 TGCGATTGATTCTAGTATTTGGGTC 59.242 40.000 0.00 0.00 0.00 4.46
5666 11485 5.680619 TGCGATTGATTCTAGTATTTGGGT 58.319 37.500 0.00 0.00 0.00 4.51
5667 11486 6.427853 TCATGCGATTGATTCTAGTATTTGGG 59.572 38.462 0.00 0.00 0.00 4.12
5668 11487 7.172190 AGTCATGCGATTGATTCTAGTATTTGG 59.828 37.037 0.00 0.00 0.00 3.28
5669 11488 8.081208 AGTCATGCGATTGATTCTAGTATTTG 57.919 34.615 0.00 0.00 0.00 2.32
5670 11489 7.386299 GGAGTCATGCGATTGATTCTAGTATTT 59.614 37.037 9.34 0.00 34.00 1.40
5671 11490 6.870965 GGAGTCATGCGATTGATTCTAGTATT 59.129 38.462 9.34 0.00 34.00 1.89
5672 11491 6.393990 GGAGTCATGCGATTGATTCTAGTAT 58.606 40.000 9.34 0.00 34.00 2.12
5673 11492 5.279006 GGGAGTCATGCGATTGATTCTAGTA 60.279 44.000 9.34 0.00 34.00 1.82
5674 11493 4.502259 GGGAGTCATGCGATTGATTCTAGT 60.502 45.833 9.34 0.00 34.00 2.57
5675 11494 3.993081 GGGAGTCATGCGATTGATTCTAG 59.007 47.826 9.34 0.00 34.00 2.43
5676 11495 3.643320 AGGGAGTCATGCGATTGATTCTA 59.357 43.478 9.34 0.00 34.00 2.10
5677 11496 2.437281 AGGGAGTCATGCGATTGATTCT 59.563 45.455 9.34 0.00 34.00 2.40
5678 11497 2.805099 GAGGGAGTCATGCGATTGATTC 59.195 50.000 0.00 0.00 33.07 2.52
5679 11498 2.804572 CGAGGGAGTCATGCGATTGATT 60.805 50.000 0.00 0.00 0.00 2.57
5680 11499 1.269988 CGAGGGAGTCATGCGATTGAT 60.270 52.381 0.00 0.00 0.00 2.57
5681 11500 0.103026 CGAGGGAGTCATGCGATTGA 59.897 55.000 0.00 0.00 0.00 2.57
5682 11501 0.179100 ACGAGGGAGTCATGCGATTG 60.179 55.000 0.00 0.00 0.00 2.67
5683 11502 0.537188 AACGAGGGAGTCATGCGATT 59.463 50.000 0.00 0.00 0.00 3.34
5684 11503 0.179100 CAACGAGGGAGTCATGCGAT 60.179 55.000 0.00 0.00 0.00 4.58
5685 11504 1.215382 CAACGAGGGAGTCATGCGA 59.785 57.895 0.00 0.00 0.00 5.10
5686 11505 0.670546 AACAACGAGGGAGTCATGCG 60.671 55.000 0.00 0.00 0.00 4.73
5687 11506 0.798776 CAACAACGAGGGAGTCATGC 59.201 55.000 0.00 0.00 0.00 4.06
5709 11528 2.609350 CCCGGATTCATTTGTTGCAAG 58.391 47.619 0.73 0.00 0.00 4.01
5927 11757 3.161067 TGTTGACAAGAGAGAGAGAGGG 58.839 50.000 0.00 0.00 0.00 4.30
5929 11759 6.453943 TGAAATGTTGACAAGAGAGAGAGAG 58.546 40.000 0.00 0.00 0.00 3.20
5930 11760 6.410942 TGAAATGTTGACAAGAGAGAGAGA 57.589 37.500 0.00 0.00 0.00 3.10
5932 11762 6.013898 AGGATGAAATGTTGACAAGAGAGAGA 60.014 38.462 0.00 0.00 0.00 3.10
5939 11769 5.149273 CAACGAGGATGAAATGTTGACAAG 58.851 41.667 0.00 0.00 41.76 3.16
5940 11770 4.556501 GCAACGAGGATGAAATGTTGACAA 60.557 41.667 7.51 0.00 41.76 3.18
5944 11774 3.557577 TGCAACGAGGATGAAATGTTG 57.442 42.857 0.00 0.00 42.04 3.33
5956 11787 0.731514 CCTTGCTGCAATGCAACGAG 60.732 55.000 16.38 16.74 46.43 4.18
5964 11795 2.226962 ATCCTTGTCCTTGCTGCAAT 57.773 45.000 16.38 0.00 0.00 3.56
5989 11821 1.227999 ACCTGCACAATCACCGTTCG 61.228 55.000 0.00 0.00 0.00 3.95
6123 12008 2.194212 GGCCTCGCTGATCGGTAGA 61.194 63.158 2.89 2.75 39.05 2.59
6195 12080 2.422093 GGGGATCTGGTCCTTCATGAAC 60.422 54.545 3.38 0.00 46.91 3.18
6924 12809 3.755628 CCGTCGACGTGGTCCCAT 61.756 66.667 33.49 0.00 37.74 4.00
7140 13025 1.067071 GTGTTAGGTAGCCAGCTCGTT 60.067 52.381 0.00 0.00 33.61 3.85
7284 13266 2.560105 GTGGTACTTTACTCGTCCCAGT 59.440 50.000 0.00 0.00 0.00 4.00
7305 13325 2.011222 GCATGCACCCCAAATGAAATG 58.989 47.619 14.21 0.00 0.00 2.32
7306 13326 1.629353 TGCATGCACCCCAAATGAAAT 59.371 42.857 18.46 0.00 0.00 2.17
7307 13327 1.054231 TGCATGCACCCCAAATGAAA 58.946 45.000 18.46 0.00 0.00 2.69
7308 13328 1.066071 CATGCATGCACCCCAAATGAA 60.066 47.619 25.37 0.00 0.00 2.57
7309 13329 0.537653 CATGCATGCACCCCAAATGA 59.462 50.000 25.37 0.00 0.00 2.57
7340 13360 1.206849 CTTTGAGGCTGGAGAGAGGTC 59.793 57.143 0.00 0.00 0.00 3.85
7356 13380 3.063997 ACTTGAGTTCAGTTGCGACTTTG 59.936 43.478 3.02 0.00 32.54 2.77
7424 13456 1.560505 AAATGCATCACCCCAAGGTC 58.439 50.000 0.00 0.00 46.45 3.85
7548 16731 2.226912 CTCCTCCTGACGGATCGATTAC 59.773 54.545 0.00 0.00 39.01 1.89
7551 16734 0.474614 TCTCCTCCTGACGGATCGAT 59.525 55.000 0.00 0.00 39.01 3.59
7552 16735 0.255033 TTCTCCTCCTGACGGATCGA 59.745 55.000 0.00 0.00 39.01 3.59
7553 16736 1.103803 TTTCTCCTCCTGACGGATCG 58.896 55.000 0.00 0.00 39.01 3.69
7554 16737 4.524714 TCATATTTCTCCTCCTGACGGATC 59.475 45.833 0.00 0.00 39.01 3.36
7559 16742 3.243907 CCGGTCATATTTCTCCTCCTGAC 60.244 52.174 0.00 0.00 33.86 3.51
7560 16743 2.965831 CCGGTCATATTTCTCCTCCTGA 59.034 50.000 0.00 0.00 0.00 3.86
7565 16748 5.482175 CCTTATCTCCGGTCATATTTCTCCT 59.518 44.000 0.00 0.00 0.00 3.69
7579 16762 1.179814 CCGTCCTCCCCTTATCTCCG 61.180 65.000 0.00 0.00 0.00 4.63
7618 18551 1.416401 CTAGGCTGGGGATAAAGCGAA 59.584 52.381 0.00 0.00 40.46 4.70
7651 18730 1.539388 CCAATACAACCATGCGTGTGT 59.461 47.619 4.96 6.30 0.00 3.72
7703 18782 9.369904 GAATGTCTTTATGCAACCAAATAACAT 57.630 29.630 0.00 2.92 0.00 2.71
7708 18787 6.266168 TCGAATGTCTTTATGCAACCAAAT 57.734 33.333 0.00 0.00 0.00 2.32
7740 18820 7.963532 AGTAACCTCATCACTAGAACAAAAGA 58.036 34.615 0.00 0.00 0.00 2.52
7753 18833 4.709886 TGCTAGTTGCTAGTAACCTCATCA 59.290 41.667 18.70 8.38 43.37 3.07
7774 18854 1.811965 TGTGCCTATGAATGTGTGTGC 59.188 47.619 0.00 0.00 0.00 4.57
7775 18855 3.076621 ACTGTGCCTATGAATGTGTGTG 58.923 45.455 0.00 0.00 0.00 3.82
7776 18856 3.076621 CACTGTGCCTATGAATGTGTGT 58.923 45.455 0.00 0.00 0.00 3.72
7777 18857 3.076621 ACACTGTGCCTATGAATGTGTG 58.923 45.455 7.90 0.00 36.10 3.82
7778 18858 3.423539 ACACTGTGCCTATGAATGTGT 57.576 42.857 7.90 0.00 33.15 3.72
7779 18859 3.310774 GCTACACTGTGCCTATGAATGTG 59.689 47.826 7.90 0.00 0.00 3.21
7780 18860 3.055167 TGCTACACTGTGCCTATGAATGT 60.055 43.478 7.90 0.00 0.00 2.71
7792 18872 7.270047 TGTTAGTTTAAGACTTGCTACACTGT 58.730 34.615 0.00 0.00 39.86 3.55
7797 18877 8.126700 TGCTTTTGTTAGTTTAAGACTTGCTAC 58.873 33.333 0.00 0.00 39.86 3.58
7816 18896 6.183360 GCTTAATTGATGTCCCAATGCTTTTG 60.183 38.462 0.00 0.00 36.90 2.44
7843 18923 6.147492 ACAATGTTTCTTAATGTACCGCGTAA 59.853 34.615 4.92 0.00 0.00 3.18
7846 18926 4.965062 ACAATGTTTCTTAATGTACCGCG 58.035 39.130 0.00 0.00 0.00 6.46
7848 18928 9.284594 CCAATTACAATGTTTCTTAATGTACCG 57.715 33.333 0.00 0.00 0.00 4.02
7849 18929 9.083080 GCCAATTACAATGTTTCTTAATGTACC 57.917 33.333 0.00 0.00 0.00 3.34
7858 18938 8.512138 GTTAGTACTGCCAATTACAATGTTTCT 58.488 33.333 5.39 0.00 0.00 2.52
7866 18946 5.123186 GTGCATGTTAGTACTGCCAATTACA 59.877 40.000 5.39 0.00 35.02 2.41
7896 18976 1.202758 TGGACTGTTAGTGCCTGTTGG 60.203 52.381 0.00 0.00 35.52 3.77
7901 18981 0.602905 GCGTTGGACTGTTAGTGCCT 60.603 55.000 0.00 0.00 35.52 4.75
7911 18991 1.686355 TGTTGAAATGGCGTTGGACT 58.314 45.000 0.00 0.00 0.00 3.85
7950 19465 4.621034 GCGTTGGACTATTTGGATGTTTTG 59.379 41.667 0.00 0.00 0.00 2.44
7963 19478 1.742831 GGATGCATTTGCGTTGGACTA 59.257 47.619 0.00 0.00 45.83 2.59
8002 19685 1.131126 CAATGACGTTGAGATGGTGGC 59.869 52.381 0.75 0.00 40.37 5.01
8039 19722 2.427453 GTGACTCCCGATAGCTTCAAGA 59.573 50.000 0.00 0.00 0.00 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.