Multiple sequence alignment - TraesCS2D01G554500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G554500 chr2D 100.000 5676 0 0 1 5676 628896795 628902470 0.000000e+00 10482.0
1 TraesCS2D01G554500 chr2D 88.722 266 29 1 1 266 324612038 324611774 1.970000e-84 324.0
2 TraesCS2D01G554500 chr2D 100.000 29 0 0 289 317 138513748 138513720 3.000000e-03 54.7
3 TraesCS2D01G554500 chr5A 92.255 3809 163 53 1767 5491 337889 334129 0.000000e+00 5278.0
4 TraesCS2D01G554500 chr5A 85.308 1055 61 33 320 1292 339379 338337 0.000000e+00 1003.0
5 TraesCS2D01G554500 chr5A 94.444 162 5 2 1513 1670 338100 337939 4.390000e-61 246.0
6 TraesCS2D01G554500 chr5D 90.260 3265 173 50 1926 5100 94617 97826 0.000000e+00 4133.0
7 TraesCS2D01G554500 chr5D 85.320 1737 106 56 1 1670 92819 94473 0.000000e+00 1657.0
8 TraesCS2D01G554500 chr5D 82.581 155 10 5 1752 1898 94472 94617 2.780000e-23 121.0
9 TraesCS2D01G554500 chr5B 87.500 1848 114 45 3266 5032 231539 233350 0.000000e+00 2025.0
10 TraesCS2D01G554500 chr5B 90.729 658 33 10 2592 3230 230564 231212 0.000000e+00 852.0
11 TraesCS2D01G554500 chr5B 82.907 860 55 41 701 1502 229146 229971 0.000000e+00 689.0
12 TraesCS2D01G554500 chr5B 88.692 451 22 16 1988 2427 230127 230559 1.810000e-144 523.0
13 TraesCS2D01G554500 chr5B 93.333 60 2 2 5054 5111 233348 233407 2.820000e-13 87.9
14 TraesCS2D01G554500 chr4D 88.806 268 29 1 1 268 211735002 211735268 1.520000e-85 327.0
15 TraesCS2D01G554500 chr4D 88.104 269 31 1 1 269 4210413 4210680 9.180000e-83 318.0
16 TraesCS2D01G554500 chr6D 89.015 264 28 1 1 264 269682127 269682389 5.480000e-85 326.0
17 TraesCS2D01G554500 chr6D 86.940 268 34 1 1 268 119256743 119257009 3.320000e-77 300.0
18 TraesCS2D01G554500 chr6D 95.506 89 3 1 1665 1753 455718103 455718016 2.130000e-29 141.0
19 TraesCS2D01G554500 chr6D 93.333 90 6 0 1664 1753 85081873 85081784 3.570000e-27 134.0
20 TraesCS2D01G554500 chr6D 95.000 40 2 0 5605 5644 415408182 415408143 4.750000e-06 63.9
21 TraesCS2D01G554500 chr6D 95.000 40 2 0 5605 5644 416435341 416435302 4.750000e-06 63.9
22 TraesCS2D01G554500 chr4A 88.321 274 27 5 1 272 379507400 379507670 1.970000e-84 324.0
23 TraesCS2D01G554500 chr4A 91.000 100 8 1 1665 1764 730998867 730998965 3.570000e-27 134.0
24 TraesCS2D01G554500 chr1B 86.989 269 34 1 1 269 151834066 151834333 9.240000e-78 302.0
25 TraesCS2D01G554500 chr3B 87.037 270 30 4 1 268 815345309 815345043 3.320000e-77 300.0
26 TraesCS2D01G554500 chr3D 95.402 87 4 0 1664 1750 583171061 583170975 7.670000e-29 139.0
27 TraesCS2D01G554500 chr3D 90.909 99 8 1 1665 1763 62360292 62360389 1.280000e-26 132.0
28 TraesCS2D01G554500 chr3D 89.000 100 11 0 1664 1763 484629065 484628966 2.150000e-24 124.0
29 TraesCS2D01G554500 chr7D 89.815 108 9 2 1648 1755 485090859 485090964 2.760000e-28 137.0
30 TraesCS2D01G554500 chr7D 89.623 106 9 2 1666 1771 169823458 169823355 3.570000e-27 134.0
31 TraesCS2D01G554500 chr7D 91.579 95 7 1 1669 1762 217476950 217476856 4.620000e-26 130.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G554500 chr2D 628896795 628902470 5675 False 10482.000000 10482 100.000000 1 5676 1 chr2D.!!$F1 5675
1 TraesCS2D01G554500 chr5A 334129 339379 5250 True 2175.666667 5278 90.669000 320 5491 3 chr5A.!!$R1 5171
2 TraesCS2D01G554500 chr5D 92819 97826 5007 False 1970.333333 4133 86.053667 1 5100 3 chr5D.!!$F1 5099
3 TraesCS2D01G554500 chr5B 229146 233407 4261 False 835.380000 2025 88.632200 701 5111 5 chr5B.!!$F1 4410

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
518 538 0.378962 CGGCGTTTGTTCCTGTTTCA 59.621 50.0 0.00 0.00 0.00 2.69 F
1684 1894 0.042131 TGTTACTCCCTCCGTCCCAT 59.958 55.0 0.00 0.00 0.00 4.00 F
2454 2722 0.100325 TGTGTGAAACCTTTGCTGCG 59.900 50.0 0.00 0.00 34.36 5.18 F
2458 2726 0.179015 TGAAACCTTTGCTGCGGGTA 60.179 50.0 11.09 0.00 32.50 3.69 F
2465 2733 0.179056 TTTGCTGCGGGTATCCTAGC 60.179 55.0 10.35 10.35 39.67 3.42 F
4296 4923 0.320050 TTTCCGCATTCCTTTTGCCC 59.680 50.0 0.00 0.00 36.75 5.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2435 2703 0.100325 CGCAGCAAAGGTTTCACACA 59.900 50.000 0.00 0.00 0.00 3.72 R
3129 3412 0.040058 TCCCTCACAGCATTTGCCAT 59.960 50.000 0.00 0.00 43.38 4.40 R
4256 4872 0.036875 AAGTGAGGGCAGCCTAACAC 59.963 55.000 12.43 17.67 0.00 3.32 R
4388 5015 2.044806 ATGGCAGCTACATCCCGTCC 62.045 60.000 0.00 0.00 0.00 4.79 R
4540 5178 9.212641 TGTTTATCTCAAAATCTCAACAGAGAG 57.787 33.333 1.47 0.00 41.41 3.20 R
5647 6375 0.027455 CACGTTCGTGTGTGTGCAAT 59.973 50.000 15.81 0.00 35.12 3.56 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 6.209361 TGATGTATCGAGTACAAGCTTGATC 58.791 40.000 32.50 22.78 45.87 2.92
96 97 7.399765 TGAATGTAATTGTGATTGGATCCCTTT 59.600 33.333 9.90 0.00 36.07 3.11
114 115 4.010349 CCTTTTACAGGCTAAACCCTCTG 58.990 47.826 0.00 0.00 40.58 3.35
137 138 4.506625 GGCTTATATACATGCCAGGTGGAA 60.507 45.833 12.94 0.00 44.34 3.53
163 164 5.881923 TCTAGGGTTACATGGTTGGTATC 57.118 43.478 0.00 0.00 0.00 2.24
172 173 0.476808 TGGTTGGTATCCAGGGGTGT 60.477 55.000 0.00 0.00 33.81 4.16
182 183 2.532715 AGGGGTGTGCATGGAGGT 60.533 61.111 0.00 0.00 0.00 3.85
187 188 2.034532 TGTGCATGGAGGTGGCAG 59.965 61.111 0.00 0.00 38.38 4.85
193 194 1.427809 CATGGAGGTGGCAGGAGATA 58.572 55.000 0.00 0.00 0.00 1.98
195 196 3.176411 CATGGAGGTGGCAGGAGATATA 58.824 50.000 0.00 0.00 0.00 0.86
200 201 3.840666 GAGGTGGCAGGAGATATATTGGA 59.159 47.826 0.00 0.00 0.00 3.53
206 207 7.418025 GGTGGCAGGAGATATATTGGAGTATAC 60.418 44.444 0.00 0.00 0.00 1.47
209 210 6.039941 GCAGGAGATATATTGGAGTATACGCT 59.960 42.308 6.57 0.00 0.00 5.07
212 213 9.344772 AGGAGATATATTGGAGTATACGCTAAG 57.655 37.037 10.83 0.00 0.00 2.18
235 236 1.640917 TGGGTAGGTGAGGTCTTGAC 58.359 55.000 0.00 0.00 0.00 3.18
269 270 1.152030 AGCTTCCAGAGTCCACCCA 60.152 57.895 0.00 0.00 0.00 4.51
317 326 1.535444 TGGTCCAGGACACCGTCAT 60.535 57.895 21.75 0.00 36.61 3.06
360 371 1.275291 ACGACAAGTGATGTGTAGGGG 59.725 52.381 0.00 0.00 44.12 4.79
379 390 2.347490 CACTGGCCCGTGCTTACT 59.653 61.111 14.80 0.00 37.74 2.24
518 538 0.378962 CGGCGTTTGTTCCTGTTTCA 59.621 50.000 0.00 0.00 0.00 2.69
562 582 5.016173 CCCATGTAGAAAGAAATGGAACCA 58.984 41.667 2.11 0.00 41.84 3.67
571 591 6.488344 AGAAAGAAATGGAACCAGTTTCTCTC 59.512 38.462 20.22 17.90 40.29 3.20
587 607 0.522180 TCTCTGGACGTCTTTCGCTC 59.478 55.000 16.46 0.00 44.19 5.03
590 610 2.126424 GGACGTCTTTCGCTCGCT 60.126 61.111 16.46 0.00 44.19 4.93
636 660 1.771848 CGACAACGACGGATATCGAAC 59.228 52.381 0.00 0.00 45.13 3.95
667 691 7.702348 CCTTTGAGAAAACACCTCTTAAAAGTG 59.298 37.037 0.00 0.00 37.53 3.16
679 703 4.710324 TCTTAAAAGTGGTGTGGTTCGAT 58.290 39.130 0.00 0.00 0.00 3.59
764 790 2.721585 AGGAAAAGAAAAGCCCCCAT 57.278 45.000 0.00 0.00 0.00 4.00
791 823 0.459237 GTCCATGAGTGAGCGAGTGG 60.459 60.000 0.00 0.00 0.00 4.00
866 922 1.127343 GACCATCCTCTCCCTCCTTG 58.873 60.000 0.00 0.00 0.00 3.61
926 993 2.000447 GACGCCATTAACACACTCTCC 59.000 52.381 0.00 0.00 0.00 3.71
946 1028 3.965026 CTCTCTCTGACCGCCCCCA 62.965 68.421 0.00 0.00 0.00 4.96
947 1029 3.003173 CTCTCTGACCGCCCCCAA 61.003 66.667 0.00 0.00 0.00 4.12
948 1030 3.003173 TCTCTGACCGCCCCCAAG 61.003 66.667 0.00 0.00 0.00 3.61
989 1078 1.933115 GCGTGATTGCGGTTGGGATT 61.933 55.000 0.00 0.00 0.00 3.01
1049 1150 2.704464 CTGAGGAATCATCAGCACCA 57.296 50.000 12.09 0.00 37.93 4.17
1051 1152 1.307097 GAGGAATCATCAGCACCAGC 58.693 55.000 0.00 0.00 42.56 4.85
1052 1153 0.622136 AGGAATCATCAGCACCAGCA 59.378 50.000 0.00 0.00 45.49 4.41
1053 1154 1.214673 AGGAATCATCAGCACCAGCAT 59.785 47.619 0.00 0.00 45.49 3.79
1181 1291 1.961180 CTCCACTGTAAGCTCCCCCG 61.961 65.000 0.00 0.00 37.60 5.73
1182 1292 2.125106 CACTGTAAGCTCCCCCGC 60.125 66.667 0.00 0.00 37.60 6.13
1183 1293 3.400054 ACTGTAAGCTCCCCCGCC 61.400 66.667 0.00 0.00 37.60 6.13
1231 1345 2.395180 GATCTCCCTCCCTCCCTCCC 62.395 70.000 0.00 0.00 0.00 4.30
1232 1346 2.929738 ATCTCCCTCCCTCCCTCCCT 62.930 65.000 0.00 0.00 0.00 4.20
1233 1347 3.036959 TCCCTCCCTCCCTCCCTC 61.037 72.222 0.00 0.00 0.00 4.30
1234 1348 4.548513 CCCTCCCTCCCTCCCTCG 62.549 77.778 0.00 0.00 0.00 4.63
1266 1380 0.453390 GCAAGATTCCGCCTTTGGAG 59.547 55.000 0.00 0.00 39.72 3.86
1393 1526 1.685180 CGAGGATGTCAGTACCCCTCA 60.685 57.143 0.00 0.00 41.19 3.86
1394 1527 2.467880 GAGGATGTCAGTACCCCTCAA 58.532 52.381 0.00 0.00 40.98 3.02
1396 1529 3.456277 GAGGATGTCAGTACCCCTCAATT 59.544 47.826 0.00 0.00 40.98 2.32
1399 1532 1.913419 TGTCAGTACCCCTCAATTCCC 59.087 52.381 0.00 0.00 0.00 3.97
1401 1534 0.551396 CAGTACCCCTCAATTCCCCC 59.449 60.000 0.00 0.00 0.00 5.40
1427 1560 1.220236 CCTCCTCTCTCTCCCTCCATT 59.780 57.143 0.00 0.00 0.00 3.16
1430 1563 2.316067 TCCTCTCTCTCCCTCCATTCAA 59.684 50.000 0.00 0.00 0.00 2.69
1432 1565 2.100584 CTCTCTCTCCCTCCATTCAACG 59.899 54.545 0.00 0.00 0.00 4.10
1496 1682 2.880890 GCATCGGCTTCATGTAATTCCT 59.119 45.455 0.00 0.00 36.96 3.36
1497 1683 3.304257 GCATCGGCTTCATGTAATTCCTG 60.304 47.826 0.00 0.00 36.96 3.86
1498 1684 3.904800 TCGGCTTCATGTAATTCCTGA 57.095 42.857 0.00 0.00 0.00 3.86
1500 1686 2.289002 CGGCTTCATGTAATTCCTGAGC 59.711 50.000 0.00 0.00 0.00 4.26
1501 1687 3.282021 GGCTTCATGTAATTCCTGAGCA 58.718 45.455 0.00 0.00 0.00 4.26
1502 1688 3.314635 GGCTTCATGTAATTCCTGAGCAG 59.685 47.826 0.00 0.00 0.00 4.24
1503 1689 3.243002 GCTTCATGTAATTCCTGAGCAGC 60.243 47.826 0.00 0.00 0.00 5.25
1504 1690 3.920231 TCATGTAATTCCTGAGCAGCT 57.080 42.857 0.00 0.00 0.00 4.24
1505 1691 3.801698 TCATGTAATTCCTGAGCAGCTC 58.198 45.455 16.21 16.21 0.00 4.09
1506 1692 3.453717 TCATGTAATTCCTGAGCAGCTCT 59.546 43.478 23.15 4.41 0.00 4.09
1507 1693 3.533606 TGTAATTCCTGAGCAGCTCTC 57.466 47.619 23.15 0.00 42.23 3.20
1508 1694 2.169352 TGTAATTCCTGAGCAGCTCTCC 59.831 50.000 23.15 0.00 41.18 3.71
1509 1695 1.582389 AATTCCTGAGCAGCTCTCCT 58.418 50.000 23.15 1.24 41.18 3.69
1511 1697 0.975040 TTCCTGAGCAGCTCTCCTCC 60.975 60.000 23.15 0.00 41.18 4.30
1534 1720 4.984161 CAGCAATTTCCATGTCTTTTTCGT 59.016 37.500 0.00 0.00 0.00 3.85
1670 1880 7.063544 CACTAGTTCTGGATAGCTGTTTGTTAC 59.936 40.741 0.00 0.00 0.00 2.50
1671 1881 6.115448 AGTTCTGGATAGCTGTTTGTTACT 57.885 37.500 0.00 0.00 0.00 2.24
1672 1882 6.166982 AGTTCTGGATAGCTGTTTGTTACTC 58.833 40.000 0.00 0.00 0.00 2.59
1673 1883 5.086104 TCTGGATAGCTGTTTGTTACTCC 57.914 43.478 0.00 0.00 0.00 3.85
1674 1884 4.081087 TCTGGATAGCTGTTTGTTACTCCC 60.081 45.833 0.00 0.00 0.00 4.30
1675 1885 3.844211 TGGATAGCTGTTTGTTACTCCCT 59.156 43.478 0.00 0.00 0.00 4.20
1676 1886 4.081087 TGGATAGCTGTTTGTTACTCCCTC 60.081 45.833 0.00 0.00 0.00 4.30
1677 1887 2.861147 AGCTGTTTGTTACTCCCTCC 57.139 50.000 0.00 0.00 0.00 4.30
1678 1888 1.002087 AGCTGTTTGTTACTCCCTCCG 59.998 52.381 0.00 0.00 0.00 4.63
1679 1889 1.270678 GCTGTTTGTTACTCCCTCCGT 60.271 52.381 0.00 0.00 0.00 4.69
1680 1890 2.685100 CTGTTTGTTACTCCCTCCGTC 58.315 52.381 0.00 0.00 0.00 4.79
1681 1891 1.345415 TGTTTGTTACTCCCTCCGTCC 59.655 52.381 0.00 0.00 0.00 4.79
1682 1892 0.978907 TTTGTTACTCCCTCCGTCCC 59.021 55.000 0.00 0.00 0.00 4.46
1683 1893 0.178926 TTGTTACTCCCTCCGTCCCA 60.179 55.000 0.00 0.00 0.00 4.37
1684 1894 0.042131 TGTTACTCCCTCCGTCCCAT 59.958 55.000 0.00 0.00 0.00 4.00
1685 1895 1.288633 TGTTACTCCCTCCGTCCCATA 59.711 52.381 0.00 0.00 0.00 2.74
1686 1896 2.292389 TGTTACTCCCTCCGTCCCATAA 60.292 50.000 0.00 0.00 0.00 1.90
1687 1897 2.970640 GTTACTCCCTCCGTCCCATAAT 59.029 50.000 0.00 0.00 0.00 1.28
1688 1898 4.154942 GTTACTCCCTCCGTCCCATAATA 58.845 47.826 0.00 0.00 0.00 0.98
1689 1899 3.562108 ACTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
1690 1900 4.687262 ACTCCCTCCGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
1691 1901 5.019657 ACTCCCTCCGTCCCATAATATAA 57.980 43.478 0.00 0.00 0.00 0.98
1692 1902 5.024118 ACTCCCTCCGTCCCATAATATAAG 58.976 45.833 0.00 0.00 0.00 1.73
1693 1903 5.222484 ACTCCCTCCGTCCCATAATATAAGA 60.222 44.000 0.00 0.00 0.00 2.10
1694 1904 5.657446 TCCCTCCGTCCCATAATATAAGAA 58.343 41.667 0.00 0.00 0.00 2.52
1695 1905 5.482878 TCCCTCCGTCCCATAATATAAGAAC 59.517 44.000 0.00 0.00 0.00 3.01
1696 1906 5.408356 CCTCCGTCCCATAATATAAGAACG 58.592 45.833 0.00 0.00 0.00 3.95
1697 1907 5.047519 CCTCCGTCCCATAATATAAGAACGT 60.048 44.000 0.00 0.00 0.00 3.99
1698 1908 6.409524 TCCGTCCCATAATATAAGAACGTT 57.590 37.500 0.00 0.00 0.00 3.99
1699 1909 6.819284 TCCGTCCCATAATATAAGAACGTTT 58.181 36.000 0.46 0.00 0.00 3.60
1700 1910 7.274447 TCCGTCCCATAATATAAGAACGTTTT 58.726 34.615 0.46 0.00 0.00 2.43
1701 1911 7.769970 TCCGTCCCATAATATAAGAACGTTTTT 59.230 33.333 9.22 9.22 0.00 1.94
1736 1946 9.988350 ACTAATGTCAAAAACGCTCTTATATTG 57.012 29.630 0.00 0.00 0.00 1.90
1742 1952 5.813080 AAAACGCTCTTATATTGTGGGAC 57.187 39.130 0.00 0.00 0.00 4.46
1743 1953 4.481368 AACGCTCTTATATTGTGGGACA 57.519 40.909 0.00 0.00 0.00 4.02
1746 1956 4.202161 ACGCTCTTATATTGTGGGACAGAG 60.202 45.833 0.00 0.00 41.80 3.35
1747 1957 4.636249 GCTCTTATATTGTGGGACAGAGG 58.364 47.826 0.00 0.00 41.80 3.69
1748 1958 4.503991 GCTCTTATATTGTGGGACAGAGGG 60.504 50.000 0.00 0.00 41.80 4.30
1749 1959 4.890988 TCTTATATTGTGGGACAGAGGGA 58.109 43.478 0.00 0.00 41.80 4.20
1750 1960 5.285401 TCTTATATTGTGGGACAGAGGGAA 58.715 41.667 0.00 0.00 41.80 3.97
1752 1962 7.079700 TCTTATATTGTGGGACAGAGGGAATA 58.920 38.462 0.00 0.00 41.80 1.75
1757 1967 3.009033 TGTGGGACAGAGGGAATAGTTTG 59.991 47.826 0.00 0.00 41.80 2.93
1778 2024 7.177392 AGTTTGCAAGTAGAAGCATTTTAGGAT 59.823 33.333 0.00 0.00 40.94 3.24
1806 2052 3.778954 AGTTTGCAAGTAGGAGAAGCT 57.221 42.857 0.00 0.00 0.00 3.74
1877 2123 2.366916 CCTCTGGTGTAATGCTAGGAGG 59.633 54.545 0.00 0.00 34.17 4.30
1962 2208 2.593026 TCAAATGCCTTCCTTTTCCGT 58.407 42.857 0.00 0.00 0.00 4.69
1963 2209 2.556622 TCAAATGCCTTCCTTTTCCGTC 59.443 45.455 0.00 0.00 0.00 4.79
2082 2328 2.975489 AGAGTCTCTCCTGGAAAGCAAA 59.025 45.455 0.00 0.00 0.00 3.68
2108 2358 3.690460 TGATCAGCCCTTCCTTCTTTTC 58.310 45.455 0.00 0.00 0.00 2.29
2110 2360 2.065799 TCAGCCCTTCCTTCTTTTCCT 58.934 47.619 0.00 0.00 0.00 3.36
2111 2363 2.165998 CAGCCCTTCCTTCTTTTCCTG 58.834 52.381 0.00 0.00 0.00 3.86
2167 2429 2.008329 GAAGAGAGCAGCTGTTGATGG 58.992 52.381 16.64 0.00 28.91 3.51
2226 2488 2.462456 ACGATGAGAAGAAAGCAGCA 57.538 45.000 0.00 0.00 0.00 4.41
2371 2633 5.120830 CGTCAAGAGGTACTTTTCATCTTGG 59.879 44.000 16.28 2.80 46.62 3.61
2391 2659 4.657013 TGGCATATGGTTGTGTTGTCTTA 58.343 39.130 4.56 0.00 0.00 2.10
2408 2676 6.791887 TGTCTTATTTTCTCTTGCAGTCTG 57.208 37.500 0.00 0.00 0.00 3.51
2427 2695 5.012046 AGTCTGATCAGTGTGTTCCATGTAA 59.988 40.000 21.92 0.00 0.00 2.41
2428 2696 5.120830 GTCTGATCAGTGTGTTCCATGTAAC 59.879 44.000 21.92 4.32 0.00 2.50
2430 2698 4.996758 TGATCAGTGTGTTCCATGTAACTG 59.003 41.667 2.65 2.38 37.07 3.16
2431 2699 4.415881 TCAGTGTGTTCCATGTAACTGT 57.584 40.909 2.65 0.00 37.05 3.55
2432 2700 5.538849 TCAGTGTGTTCCATGTAACTGTA 57.461 39.130 2.65 0.00 37.05 2.74
2433 2701 6.109156 TCAGTGTGTTCCATGTAACTGTAT 57.891 37.500 2.65 0.00 37.05 2.29
2434 2702 6.530120 TCAGTGTGTTCCATGTAACTGTATT 58.470 36.000 2.65 0.00 37.05 1.89
2435 2703 6.995686 TCAGTGTGTTCCATGTAACTGTATTT 59.004 34.615 2.65 0.00 37.05 1.40
2436 2704 7.041440 TCAGTGTGTTCCATGTAACTGTATTTG 60.041 37.037 2.65 0.00 37.05 2.32
2437 2705 6.770785 AGTGTGTTCCATGTAACTGTATTTGT 59.229 34.615 2.65 0.00 0.00 2.83
2438 2706 6.855914 GTGTGTTCCATGTAACTGTATTTGTG 59.144 38.462 2.65 0.00 0.00 3.33
2449 2717 7.971168 TGTAACTGTATTTGTGTGAAACCTTTG 59.029 33.333 0.00 0.00 34.36 2.77
2450 2718 5.348164 ACTGTATTTGTGTGAAACCTTTGC 58.652 37.500 0.00 0.00 34.36 3.68
2451 2719 5.127031 ACTGTATTTGTGTGAAACCTTTGCT 59.873 36.000 0.00 0.00 34.36 3.91
2452 2720 5.347342 TGTATTTGTGTGAAACCTTTGCTG 58.653 37.500 0.00 0.00 34.36 4.41
2453 2721 2.292103 TTGTGTGAAACCTTTGCTGC 57.708 45.000 0.00 0.00 34.36 5.25
2454 2722 0.100325 TGTGTGAAACCTTTGCTGCG 59.900 50.000 0.00 0.00 34.36 5.18
2455 2723 0.594796 GTGTGAAACCTTTGCTGCGG 60.595 55.000 0.00 0.00 34.36 5.69
2456 2724 1.007387 GTGAAACCTTTGCTGCGGG 60.007 57.895 0.00 0.00 0.00 6.13
2457 2725 1.454847 TGAAACCTTTGCTGCGGGT 60.455 52.632 6.05 6.05 34.47 5.28
2458 2726 0.179015 TGAAACCTTTGCTGCGGGTA 60.179 50.000 11.09 0.00 32.50 3.69
2459 2727 1.173913 GAAACCTTTGCTGCGGGTAT 58.826 50.000 11.09 1.90 32.50 2.73
2460 2728 1.132453 GAAACCTTTGCTGCGGGTATC 59.868 52.381 11.09 0.00 32.50 2.24
2461 2729 0.679960 AACCTTTGCTGCGGGTATCC 60.680 55.000 11.09 0.00 32.50 2.59
2462 2730 1.224592 CCTTTGCTGCGGGTATCCT 59.775 57.895 0.00 0.00 0.00 3.24
2463 2731 0.468226 CCTTTGCTGCGGGTATCCTA 59.532 55.000 0.00 0.00 0.00 2.94
2464 2732 1.541233 CCTTTGCTGCGGGTATCCTAG 60.541 57.143 0.00 0.00 0.00 3.02
2465 2733 0.179056 TTTGCTGCGGGTATCCTAGC 60.179 55.000 10.35 10.35 39.67 3.42
2466 2734 2.040009 TTGCTGCGGGTATCCTAGCC 62.040 60.000 13.66 0.00 42.81 3.93
2467 2735 2.507854 GCTGCGGGTATCCTAGCCA 61.508 63.158 6.84 0.00 46.50 4.75
2473 2741 1.541233 CGGGTATCCTAGCCAGCTTTG 60.541 57.143 0.00 0.00 46.50 2.77
2476 2744 2.488952 GTATCCTAGCCAGCTTTGAGC 58.511 52.381 0.00 0.00 42.84 4.26
2479 2747 1.283029 TCCTAGCCAGCTTTGAGCAAT 59.717 47.619 0.00 0.00 45.56 3.56
2487 2755 4.381292 GCCAGCTTTGAGCAATCTGTATTT 60.381 41.667 2.47 0.00 45.56 1.40
2534 2802 1.005215 AGCTTTTATGCAGCACCTCCT 59.995 47.619 0.00 0.00 39.99 3.69
2580 2849 6.652062 CCGTTTTCTTGGTAGTTGGTAATACT 59.348 38.462 0.00 0.00 0.00 2.12
2629 2902 5.994887 TTTACGTGTTGCTACTTCACAAT 57.005 34.783 0.00 0.00 33.04 2.71
2658 2931 0.855349 CGGCGCATTCTATCACTGAC 59.145 55.000 10.83 0.00 0.00 3.51
2659 2932 1.536922 CGGCGCATTCTATCACTGACT 60.537 52.381 10.83 0.00 0.00 3.41
2675 2948 6.052360 TCACTGACTTTTATGTGCAGTTGTA 58.948 36.000 0.00 0.00 37.69 2.41
2689 2962 5.874810 GTGCAGTTGTAGATTCTACCATCAA 59.125 40.000 18.81 6.00 0.00 2.57
2738 3017 4.081406 TCCTGCTGAAACACTAATGCATT 58.919 39.130 17.56 17.56 0.00 3.56
2989 3270 1.942657 GTGGCATACGATCAGCAATGT 59.057 47.619 0.00 0.00 0.00 2.71
3129 3412 0.682532 TGTTCTTGCTGGTGGTGCAA 60.683 50.000 0.00 0.00 46.48 4.08
3257 3545 9.438291 CCGAAATTATTCATTGTCATACAAGTC 57.562 33.333 0.00 0.00 41.94 3.01
3321 3900 2.268920 GGATCGTGAGCTTGCCCA 59.731 61.111 0.00 0.00 0.00 5.36
3489 4068 4.030913 ACTCGACCTTTTCTGGATGGATA 58.969 43.478 0.00 0.00 0.00 2.59
3610 4200 1.891150 CAGGGAGAAATGCAGCAACTT 59.109 47.619 0.00 0.00 0.00 2.66
3669 4259 6.609212 AGATCAGAAGCTCAACTGAAGGTATA 59.391 38.462 17.61 0.08 44.47 1.47
3670 4260 6.798427 TCAGAAGCTCAACTGAAGGTATAT 57.202 37.500 13.32 0.00 39.68 0.86
3711 4321 4.402793 TCATGAAGTCCTACCAGTTAGCTC 59.597 45.833 0.00 0.00 0.00 4.09
3714 4324 4.463186 TGAAGTCCTACCAGTTAGCTCTTC 59.537 45.833 0.00 0.00 36.98 2.87
3716 4326 2.431419 GTCCTACCAGTTAGCTCTTCCC 59.569 54.545 0.00 0.00 0.00 3.97
3724 4334 1.478916 GTTAGCTCTTCCCGCTCTCTT 59.521 52.381 0.00 0.00 38.86 2.85
3725 4335 1.394618 TAGCTCTTCCCGCTCTCTTC 58.605 55.000 0.00 0.00 38.86 2.87
3726 4336 0.613292 AGCTCTTCCCGCTCTCTTCA 60.613 55.000 0.00 0.00 30.49 3.02
3727 4337 0.463620 GCTCTTCCCGCTCTCTTCAT 59.536 55.000 0.00 0.00 0.00 2.57
3743 4354 3.064408 TCTTCATTTGTGATCTGCATCGC 59.936 43.478 0.00 0.00 39.64 4.58
3748 4359 5.239963 TCATTTGTGATCTGCATCGCATATT 59.760 36.000 4.49 0.00 46.60 1.28
3900 4511 1.953559 TCTATCAAAGCGGCCATCAC 58.046 50.000 2.24 0.00 0.00 3.06
3932 4543 5.023452 AGAACATCAGTATCTACCACCACA 58.977 41.667 0.00 0.00 0.00 4.17
4107 4718 7.885399 AGAAGCCTAGTGAATTTACATCTGTTT 59.115 33.333 2.93 0.00 0.00 2.83
4148 4759 5.809562 GTCAGGTATGCTGTATGATATGCTC 59.190 44.000 0.00 0.00 0.00 4.26
4169 4780 1.801178 CAAAAGGAGGTCGTTGCTCTC 59.199 52.381 0.00 0.00 0.00 3.20
4178 4789 1.188219 TCGTTGCTCTCAGGAAGGCT 61.188 55.000 0.00 0.00 32.58 4.58
4254 4870 4.343526 ACTTTAGTCTGATGCGAGGATCAT 59.656 41.667 7.71 0.00 31.88 2.45
4256 4872 5.635417 TTAGTCTGATGCGAGGATCATAG 57.365 43.478 7.71 0.00 31.88 2.23
4272 4888 1.486310 CATAGTGTTAGGCTGCCCTCA 59.514 52.381 16.57 9.45 41.75 3.86
4295 4922 2.162319 TTTTCCGCATTCCTTTTGCC 57.838 45.000 0.00 0.00 36.75 4.52
4296 4923 0.320050 TTTCCGCATTCCTTTTGCCC 59.680 50.000 0.00 0.00 36.75 5.36
4297 4924 1.872197 TTCCGCATTCCTTTTGCCCG 61.872 55.000 0.00 0.00 36.75 6.13
4298 4925 2.506881 CGCATTCCTTTTGCCCGC 60.507 61.111 0.00 0.00 36.75 6.13
4299 4926 2.656055 GCATTCCTTTTGCCCGCA 59.344 55.556 0.00 0.00 33.95 5.69
4300 4927 1.218854 GCATTCCTTTTGCCCGCAT 59.781 52.632 0.00 0.00 33.95 4.73
4301 4928 0.459489 GCATTCCTTTTGCCCGCATA 59.541 50.000 0.00 0.00 33.95 3.14
4302 4929 1.802508 GCATTCCTTTTGCCCGCATAC 60.803 52.381 0.00 0.00 33.95 2.39
4303 4930 1.750778 CATTCCTTTTGCCCGCATACT 59.249 47.619 0.00 0.00 0.00 2.12
4304 4931 2.791347 TTCCTTTTGCCCGCATACTA 57.209 45.000 0.00 0.00 0.00 1.82
4343 4970 3.888323 TGTGCAGATGTTGGCTAAGAAAA 59.112 39.130 0.00 0.00 0.00 2.29
4348 4975 5.220931 GCAGATGTTGGCTAAGAAAATCGAT 60.221 40.000 0.00 0.00 0.00 3.59
4369 4996 5.064198 CGATACTTTAACAAAGGCGATGGAA 59.936 40.000 3.88 0.00 42.82 3.53
4388 5015 4.102210 TGGAATCAGAGGCTAAGAAGATGG 59.898 45.833 0.00 0.00 0.00 3.51
4540 5178 1.002087 CCCCTACCGCAGATACCATTC 59.998 57.143 0.00 0.00 0.00 2.67
4568 5207 9.823098 CTCTGTTGAGATTTTGAGATAAACAAG 57.177 33.333 0.00 0.00 42.73 3.16
4689 5340 5.220989 GCAACATGTGATGCTGATATGAAGT 60.221 40.000 14.03 0.00 40.18 3.01
4712 5363 7.406104 AGTATTAAAAAGACCTTGGAGCATCT 58.594 34.615 0.00 0.00 33.73 2.90
4761 5412 0.907230 AGGGACCCTCTGCTGACTTC 60.907 60.000 7.44 0.00 0.00 3.01
4813 5475 1.367840 GTGCCCAGAAGTGTCGAGT 59.632 57.895 0.00 0.00 0.00 4.18
4818 5480 1.201181 CCCAGAAGTGTCGAGTCTGAG 59.799 57.143 13.98 1.18 41.08 3.35
4824 5486 0.109504 GTGTCGAGTCTGAGCCTGAC 60.110 60.000 0.00 4.71 33.50 3.51
4826 5488 1.679305 TCGAGTCTGAGCCTGACCC 60.679 63.158 8.05 0.00 33.73 4.46
4827 5489 1.680651 CGAGTCTGAGCCTGACCCT 60.681 63.158 8.05 0.00 33.73 4.34
4828 5490 0.394488 CGAGTCTGAGCCTGACCCTA 60.394 60.000 8.05 0.00 33.73 3.53
4829 5491 1.853963 GAGTCTGAGCCTGACCCTAA 58.146 55.000 8.05 0.00 33.73 2.69
4830 5492 2.393646 GAGTCTGAGCCTGACCCTAAT 58.606 52.381 8.05 0.00 33.73 1.73
4831 5493 2.364002 GAGTCTGAGCCTGACCCTAATC 59.636 54.545 8.05 0.00 33.73 1.75
4832 5494 2.111384 GTCTGAGCCTGACCCTAATCA 58.889 52.381 0.00 0.00 0.00 2.57
4934 5618 7.786030 TGAGATTTGGTGGTGTTTTTATTCAA 58.214 30.769 0.00 0.00 0.00 2.69
4939 5623 5.859495 TGGTGGTGTTTTTATTCAATTCCC 58.141 37.500 0.00 0.00 0.00 3.97
5020 5704 5.491078 TGTTTGTAATCCTACTCCCCAAGAT 59.509 40.000 0.00 0.00 0.00 2.40
5049 5734 3.505680 TGGTGTTTTATGCTAGCCAAGTG 59.494 43.478 13.29 0.00 0.00 3.16
5133 5842 5.586643 GGAAGGTGAATTCCAATCTGTCTAC 59.413 44.000 2.27 0.00 46.77 2.59
5141 5850 9.567776 TGAATTCCAATCTGTCTACTGTAAAAA 57.432 29.630 2.27 0.00 0.00 1.94
5144 5853 7.377766 TCCAATCTGTCTACTGTAAAAATGC 57.622 36.000 0.00 0.00 0.00 3.56
5145 5854 6.939730 TCCAATCTGTCTACTGTAAAAATGCA 59.060 34.615 0.00 0.00 0.00 3.96
5146 5855 7.119699 TCCAATCTGTCTACTGTAAAAATGCAG 59.880 37.037 0.00 0.00 38.58 4.41
5147 5856 5.862924 TCTGTCTACTGTAAAAATGCAGC 57.137 39.130 0.00 0.00 36.26 5.25
5148 5857 5.304778 TCTGTCTACTGTAAAAATGCAGCA 58.695 37.500 0.00 0.00 36.26 4.41
5149 5858 5.939883 TCTGTCTACTGTAAAAATGCAGCAT 59.060 36.000 0.52 0.52 36.26 3.79
5150 5859 6.092670 TCTGTCTACTGTAAAAATGCAGCATC 59.907 38.462 8.77 0.00 36.26 3.91
5155 5864 4.917415 ACTGTAAAAATGCAGCATCGAAAC 59.083 37.500 8.77 6.18 36.26 2.78
5161 5870 4.717233 AATGCAGCATCGAAACCATTTA 57.283 36.364 8.77 0.00 0.00 1.40
5164 5873 3.505680 TGCAGCATCGAAACCATTTAAGT 59.494 39.130 0.00 0.00 0.00 2.24
5167 5876 5.391523 GCAGCATCGAAACCATTTAAGTACA 60.392 40.000 0.00 0.00 0.00 2.90
5169 5878 5.703592 AGCATCGAAACCATTTAAGTACACA 59.296 36.000 0.00 0.00 0.00 3.72
5171 5880 6.566942 GCATCGAAACCATTTAAGTACACACA 60.567 38.462 0.00 0.00 0.00 3.72
5173 5882 5.816258 TCGAAACCATTTAAGTACACACACA 59.184 36.000 0.00 0.00 0.00 3.72
5175 5884 6.457122 CGAAACCATTTAAGTACACACACACA 60.457 38.462 0.00 0.00 0.00 3.72
5177 5886 5.186942 ACCATTTAAGTACACACACACACA 58.813 37.500 0.00 0.00 0.00 3.72
5183 5892 2.100916 AGTACACACACACACACTCTCC 59.899 50.000 0.00 0.00 0.00 3.71
5184 5893 1.195115 ACACACACACACACTCTCCT 58.805 50.000 0.00 0.00 0.00 3.69
5189 5898 1.689273 ACACACACACTCTCCTTCTCC 59.311 52.381 0.00 0.00 0.00 3.71
5273 5989 5.567430 ACTAAACTTGGGGGAGTATGTTTC 58.433 41.667 0.00 0.00 0.00 2.78
5280 5996 2.158856 GGGGGAGTATGTTTCCTTACCG 60.159 54.545 0.00 0.00 35.01 4.02
5363 6091 6.183360 GCTTTGTGTTTCTCTGAAGTTGTTTG 60.183 38.462 0.00 0.00 0.00 2.93
5381 6109 8.835439 AGTTGTTTGTCTTTTGATTTGTGTTTT 58.165 25.926 0.00 0.00 0.00 2.43
5418 6146 3.800685 TTCCCCGTGCACACTGACG 62.801 63.158 18.64 0.78 35.31 4.35
5443 6171 3.695606 TCTGGCCGAGTGCAGACC 61.696 66.667 0.00 0.00 43.89 3.85
5482 6210 2.123897 ACGGCTGCCACTTTTGGT 60.124 55.556 20.29 3.20 45.98 3.67
5487 6215 1.166531 GCTGCCACTTTTGGTCGAGT 61.167 55.000 0.00 0.00 45.98 4.18
5491 6219 3.698250 CACTTTTGGTCGAGTGGGA 57.302 52.632 0.00 0.00 39.60 4.37
5492 6220 1.226746 CACTTTTGGTCGAGTGGGAC 58.773 55.000 0.00 0.00 39.60 4.46
5493 6221 1.129058 ACTTTTGGTCGAGTGGGACT 58.871 50.000 0.00 0.00 37.12 3.85
5494 6222 1.202651 ACTTTTGGTCGAGTGGGACTG 60.203 52.381 0.00 0.00 37.12 3.51
5495 6223 0.107831 TTTTGGTCGAGTGGGACTGG 59.892 55.000 0.00 0.00 37.12 4.00
5496 6224 1.764571 TTTGGTCGAGTGGGACTGGG 61.765 60.000 0.00 0.00 37.12 4.45
5497 6225 4.083862 GGTCGAGTGGGACTGGGC 62.084 72.222 0.00 0.00 37.12 5.36
5498 6226 4.436998 GTCGAGTGGGACTGGGCG 62.437 72.222 0.00 0.00 34.09 6.13
5499 6227 4.671590 TCGAGTGGGACTGGGCGA 62.672 66.667 0.00 0.00 0.00 5.54
5500 6228 4.135153 CGAGTGGGACTGGGCGAG 62.135 72.222 0.00 0.00 0.00 5.03
5501 6229 3.775654 GAGTGGGACTGGGCGAGG 61.776 72.222 0.51 0.00 0.00 4.63
5502 6230 4.316823 AGTGGGACTGGGCGAGGA 62.317 66.667 0.51 0.00 0.00 3.71
5503 6231 4.083862 GTGGGACTGGGCGAGGAC 62.084 72.222 0.51 0.00 0.00 3.85
5506 6234 3.148279 GGACTGGGCGAGGACGAT 61.148 66.667 0.51 0.00 42.66 3.73
5507 6235 2.722201 GGACTGGGCGAGGACGATT 61.722 63.158 0.51 0.00 42.66 3.34
5508 6236 1.519455 GACTGGGCGAGGACGATTG 60.519 63.158 0.51 0.00 42.66 2.67
5509 6237 2.202932 CTGGGCGAGGACGATTGG 60.203 66.667 0.00 0.00 42.66 3.16
5510 6238 3.000819 TGGGCGAGGACGATTGGT 61.001 61.111 0.00 0.00 42.66 3.67
5511 6239 2.202892 GGGCGAGGACGATTGGTC 60.203 66.667 0.00 0.00 45.31 4.02
5525 6253 1.373435 TGGTCCACCACTTAAGCCG 59.627 57.895 1.29 0.00 42.01 5.52
5526 6254 1.373812 GGTCCACCACTTAAGCCGT 59.626 57.895 1.29 0.00 35.64 5.68
5527 6255 0.953960 GGTCCACCACTTAAGCCGTG 60.954 60.000 13.20 13.20 35.64 4.94
5531 6259 2.358247 CCACTTAAGCCGTGGCGT 60.358 61.111 5.02 4.71 44.70 5.68
5532 6260 1.964373 CCACTTAAGCCGTGGCGTT 60.964 57.895 4.29 2.98 44.70 4.84
5533 6261 1.908066 CCACTTAAGCCGTGGCGTTC 61.908 60.000 4.29 0.00 44.70 3.95
5547 6275 2.909076 GCGTTCGACGACAAGTAAAA 57.091 45.000 10.82 0.00 46.05 1.52
5548 6276 3.429061 GCGTTCGACGACAAGTAAAAT 57.571 42.857 10.82 0.00 46.05 1.82
5549 6277 3.393022 GCGTTCGACGACAAGTAAAATC 58.607 45.455 10.82 0.00 46.05 2.17
5550 6278 3.121261 GCGTTCGACGACAAGTAAAATCA 60.121 43.478 10.82 0.00 46.05 2.57
5551 6279 4.433805 GCGTTCGACGACAAGTAAAATCAT 60.434 41.667 10.82 0.00 46.05 2.45
5552 6280 5.007039 CGTTCGACGACAAGTAAAATCATG 58.993 41.667 0.00 0.00 46.05 3.07
5553 6281 5.164129 CGTTCGACGACAAGTAAAATCATGA 60.164 40.000 0.00 0.00 46.05 3.07
5554 6282 6.453791 CGTTCGACGACAAGTAAAATCATGAT 60.454 38.462 1.18 1.18 46.05 2.45
5555 6283 6.331170 TCGACGACAAGTAAAATCATGATG 57.669 37.500 9.46 0.00 0.00 3.07
5556 6284 5.290885 TCGACGACAAGTAAAATCATGATGG 59.709 40.000 9.46 0.00 0.00 3.51
5557 6285 5.502382 CGACGACAAGTAAAATCATGATGGG 60.502 44.000 9.46 0.00 0.00 4.00
5558 6286 4.096382 ACGACAAGTAAAATCATGATGGGC 59.904 41.667 9.46 0.56 0.00 5.36
5559 6287 4.601019 GACAAGTAAAATCATGATGGGCG 58.399 43.478 9.46 0.00 0.00 6.13
5560 6288 3.381272 ACAAGTAAAATCATGATGGGCGG 59.619 43.478 9.46 0.00 0.00 6.13
5561 6289 2.586425 AGTAAAATCATGATGGGCGGG 58.414 47.619 9.46 0.00 0.00 6.13
5562 6290 1.000274 GTAAAATCATGATGGGCGGGC 60.000 52.381 9.46 0.00 0.00 6.13
5563 6291 1.737355 AAAATCATGATGGGCGGGCG 61.737 55.000 9.46 0.00 0.00 6.13
5564 6292 2.909457 AAATCATGATGGGCGGGCGT 62.909 55.000 9.46 0.00 0.00 5.68
5565 6293 2.050836 AATCATGATGGGCGGGCGTA 62.051 55.000 9.46 0.00 0.00 4.42
5566 6294 2.454832 ATCATGATGGGCGGGCGTAG 62.455 60.000 7.59 0.00 0.00 3.51
5567 6295 3.941188 ATGATGGGCGGGCGTAGG 61.941 66.667 0.00 0.00 0.00 3.18
5573 6301 4.185286 GGCGGGCGTAGGGGAATT 62.185 66.667 0.00 0.00 0.00 2.17
5574 6302 2.900337 GCGGGCGTAGGGGAATTG 60.900 66.667 0.00 0.00 0.00 2.32
5575 6303 2.900337 CGGGCGTAGGGGAATTGC 60.900 66.667 0.00 0.00 0.00 3.56
5576 6304 2.595655 GGGCGTAGGGGAATTGCT 59.404 61.111 0.00 0.00 0.00 3.91
5577 6305 1.823899 GGGCGTAGGGGAATTGCTG 60.824 63.158 0.00 0.00 0.00 4.41
5578 6306 1.223487 GGCGTAGGGGAATTGCTGA 59.777 57.895 0.00 0.00 0.00 4.26
5579 6307 1.095807 GGCGTAGGGGAATTGCTGAC 61.096 60.000 0.00 0.00 0.00 3.51
5580 6308 1.429148 GCGTAGGGGAATTGCTGACG 61.429 60.000 12.06 12.06 0.00 4.35
5581 6309 1.429148 CGTAGGGGAATTGCTGACGC 61.429 60.000 0.00 0.00 0.00 5.19
5582 6310 1.095807 GTAGGGGAATTGCTGACGCC 61.096 60.000 0.00 0.00 36.99 5.68
5583 6311 1.558167 TAGGGGAATTGCTGACGCCA 61.558 55.000 0.00 0.00 38.75 5.69
5584 6312 1.976474 GGGGAATTGCTGACGCCAA 60.976 57.895 0.00 0.00 36.78 4.52
5585 6313 1.508088 GGGAATTGCTGACGCCAAG 59.492 57.895 0.00 0.00 34.43 3.61
5586 6314 1.153958 GGAATTGCTGACGCCAAGC 60.154 57.895 0.00 0.00 34.43 4.01
5587 6315 1.580942 GAATTGCTGACGCCAAGCA 59.419 52.632 3.38 3.38 36.72 3.91
5588 6316 0.455633 GAATTGCTGACGCCAAGCAG 60.456 55.000 7.26 0.00 39.85 4.24
5589 6317 1.870055 AATTGCTGACGCCAAGCAGG 61.870 55.000 7.26 0.00 39.85 4.85
5590 6318 3.772853 TTGCTGACGCCAAGCAGGT 62.773 57.895 7.26 0.00 39.85 4.00
5591 6319 2.047274 GCTGACGCCAAGCAGGTA 60.047 61.111 0.00 0.00 40.61 3.08
5592 6320 2.103042 GCTGACGCCAAGCAGGTAG 61.103 63.158 0.00 0.00 40.61 3.18
5593 6321 1.448540 CTGACGCCAAGCAGGTAGG 60.449 63.158 0.00 0.00 40.61 3.18
5594 6322 2.172483 CTGACGCCAAGCAGGTAGGT 62.172 60.000 0.00 0.00 40.61 3.08
5595 6323 1.741770 GACGCCAAGCAGGTAGGTG 60.742 63.158 0.00 0.00 40.61 4.00
5596 6324 2.436646 CGCCAAGCAGGTAGGTGG 60.437 66.667 0.00 0.00 40.61 4.61
5597 6325 2.757077 GCCAAGCAGGTAGGTGGT 59.243 61.111 0.00 0.00 40.61 4.16
5598 6326 1.074951 GCCAAGCAGGTAGGTGGTT 59.925 57.895 0.00 0.00 40.61 3.67
5600 6328 3.725754 CAAGCAGGTAGGTGGTTGT 57.274 52.632 7.46 0.00 46.29 3.32
5601 6329 1.981256 CAAGCAGGTAGGTGGTTGTT 58.019 50.000 7.46 0.00 46.29 2.83
5602 6330 2.306847 CAAGCAGGTAGGTGGTTGTTT 58.693 47.619 7.46 0.00 46.29 2.83
5603 6331 1.981256 AGCAGGTAGGTGGTTGTTTG 58.019 50.000 0.00 0.00 0.00 2.93
5604 6332 0.958822 GCAGGTAGGTGGTTGTTTGG 59.041 55.000 0.00 0.00 0.00 3.28
5605 6333 1.616159 CAGGTAGGTGGTTGTTTGGG 58.384 55.000 0.00 0.00 0.00 4.12
5606 6334 0.481128 AGGTAGGTGGTTGTTTGGGG 59.519 55.000 0.00 0.00 0.00 4.96
5607 6335 0.479378 GGTAGGTGGTTGTTTGGGGA 59.521 55.000 0.00 0.00 0.00 4.81
5608 6336 1.133419 GGTAGGTGGTTGTTTGGGGAA 60.133 52.381 0.00 0.00 0.00 3.97
5609 6337 2.668625 GTAGGTGGTTGTTTGGGGAAA 58.331 47.619 0.00 0.00 0.00 3.13
5610 6338 2.255770 AGGTGGTTGTTTGGGGAAAA 57.744 45.000 0.00 0.00 0.00 2.29
5612 6340 1.134340 GGTGGTTGTTTGGGGAAAACC 60.134 52.381 0.00 0.00 46.47 3.27
5624 6352 3.842732 GGGAAAACCCTATTTGACGTG 57.157 47.619 0.00 0.00 34.51 4.49
5625 6353 3.151554 GGGAAAACCCTATTTGACGTGT 58.848 45.455 0.00 0.00 34.51 4.49
5626 6354 3.570975 GGGAAAACCCTATTTGACGTGTT 59.429 43.478 0.00 0.00 34.51 3.32
5627 6355 4.038282 GGGAAAACCCTATTTGACGTGTTT 59.962 41.667 0.00 0.00 34.51 2.83
5628 6356 5.452216 GGGAAAACCCTATTTGACGTGTTTT 60.452 40.000 8.34 8.34 38.28 2.43
5629 6357 5.460748 GGAAAACCCTATTTGACGTGTTTTG 59.539 40.000 12.14 0.00 36.40 2.44
5630 6358 3.636282 ACCCTATTTGACGTGTTTTGC 57.364 42.857 0.00 0.00 0.00 3.68
5631 6359 2.031508 ACCCTATTTGACGTGTTTTGCG 60.032 45.455 0.00 0.00 0.00 4.85
5632 6360 2.031508 CCCTATTTGACGTGTTTTGCGT 60.032 45.455 0.00 0.00 45.86 5.24
5639 6367 1.889891 ACGTGTTTTGCGTCAAACAG 58.110 45.000 12.77 10.15 38.23 3.16
5640 6368 1.198178 ACGTGTTTTGCGTCAAACAGT 59.802 42.857 12.77 10.61 38.23 3.55
5641 6369 1.837747 CGTGTTTTGCGTCAAACAGTC 59.162 47.619 12.77 4.22 32.79 3.51
5642 6370 1.837747 GTGTTTTGCGTCAAACAGTCG 59.162 47.619 12.77 0.00 32.79 4.18
5643 6371 1.732809 TGTTTTGCGTCAAACAGTCGA 59.267 42.857 9.43 0.00 32.79 4.20
5644 6372 2.353269 TGTTTTGCGTCAAACAGTCGAT 59.647 40.909 9.43 0.00 32.79 3.59
5645 6373 2.941891 TTTGCGTCAAACAGTCGATC 57.058 45.000 0.00 0.00 0.00 3.69
5646 6374 1.859383 TTGCGTCAAACAGTCGATCA 58.141 45.000 0.00 0.00 0.00 2.92
5647 6375 1.859383 TGCGTCAAACAGTCGATCAA 58.141 45.000 0.00 0.00 0.00 2.57
5648 6376 2.412870 TGCGTCAAACAGTCGATCAAT 58.587 42.857 0.00 0.00 0.00 2.57
5649 6377 2.805671 TGCGTCAAACAGTCGATCAATT 59.194 40.909 0.00 0.00 0.00 2.32
5650 6378 3.155998 GCGTCAAACAGTCGATCAATTG 58.844 45.455 0.00 0.00 0.00 2.32
5651 6379 3.155998 CGTCAAACAGTCGATCAATTGC 58.844 45.455 0.00 0.00 0.00 3.56
5652 6380 3.363871 CGTCAAACAGTCGATCAATTGCA 60.364 43.478 0.00 0.00 0.00 4.08
5653 6381 3.908382 GTCAAACAGTCGATCAATTGCAC 59.092 43.478 0.00 0.00 0.00 4.57
5654 6382 3.563390 TCAAACAGTCGATCAATTGCACA 59.437 39.130 0.00 0.00 0.00 4.57
5655 6383 3.542712 AACAGTCGATCAATTGCACAC 57.457 42.857 0.00 0.00 0.00 3.82
5656 6384 2.493035 ACAGTCGATCAATTGCACACA 58.507 42.857 0.00 0.00 0.00 3.72
5657 6385 2.224079 ACAGTCGATCAATTGCACACAC 59.776 45.455 0.00 0.00 0.00 3.82
5658 6386 2.223845 CAGTCGATCAATTGCACACACA 59.776 45.455 0.00 0.00 0.00 3.72
5659 6387 2.224079 AGTCGATCAATTGCACACACAC 59.776 45.455 0.00 0.00 0.00 3.82
5660 6388 1.194322 TCGATCAATTGCACACACACG 59.806 47.619 0.00 0.00 0.00 4.49
5661 6389 1.194322 CGATCAATTGCACACACACGA 59.806 47.619 0.00 0.00 0.00 4.35
5662 6390 2.349343 CGATCAATTGCACACACACGAA 60.349 45.455 0.00 0.00 0.00 3.85
5663 6391 2.466870 TCAATTGCACACACACGAAC 57.533 45.000 0.00 0.00 0.00 3.95
5664 6392 1.111667 CAATTGCACACACACGAACG 58.888 50.000 0.00 0.00 0.00 3.95
5665 6393 0.730265 AATTGCACACACACGAACGT 59.270 45.000 0.00 0.00 0.00 3.99
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 3.991773 CTCTCCTTACGATCTCGAGGTAG 59.008 52.174 13.56 8.65 43.02 3.18
96 97 1.280998 GCCAGAGGGTTTAGCCTGTAA 59.719 52.381 5.00 0.00 37.43 2.41
137 138 3.117888 CCAACCATGTAACCCTAGATGCT 60.118 47.826 0.00 0.00 29.35 3.79
163 164 2.044650 CTCCATGCACACCCCTGG 60.045 66.667 0.00 0.00 0.00 4.45
172 173 2.934932 TCCTGCCACCTCCATGCA 60.935 61.111 0.00 0.00 0.00 3.96
182 183 6.321435 CGTATACTCCAATATATCTCCTGCCA 59.679 42.308 0.56 0.00 0.00 4.92
187 188 9.122779 ACTTAGCGTATACTCCAATATATCTCC 57.877 37.037 0.56 0.00 0.00 3.71
193 194 7.309867 CCCAAGACTTAGCGTATACTCCAATAT 60.310 40.741 0.56 0.00 0.00 1.28
195 196 5.221461 CCCAAGACTTAGCGTATACTCCAAT 60.221 44.000 0.56 0.00 0.00 3.16
200 201 4.826183 CCTACCCAAGACTTAGCGTATACT 59.174 45.833 0.56 0.00 0.00 2.12
206 207 1.822990 TCACCTACCCAAGACTTAGCG 59.177 52.381 0.00 0.00 0.00 4.26
209 210 3.077088 AGACCTCACCTACCCAAGACTTA 59.923 47.826 0.00 0.00 0.00 2.24
212 213 1.939980 AGACCTCACCTACCCAAGAC 58.060 55.000 0.00 0.00 0.00 3.01
250 251 1.298014 GGGTGGACTCTGGAAGCTG 59.702 63.158 0.00 0.00 0.00 4.24
269 270 2.172717 CAATCCCATAGTCCTCGGGTTT 59.827 50.000 0.00 0.00 41.12 3.27
299 308 1.535444 ATGACGGTGTCCTGGACCA 60.535 57.895 23.42 13.93 32.45 4.02
300 309 1.218316 GATGACGGTGTCCTGGACC 59.782 63.158 23.42 14.37 0.00 4.46
314 323 4.705110 TCTTTTGGGTGAGACTTGATGA 57.295 40.909 0.00 0.00 0.00 2.92
375 386 5.763698 TCAACGTTCTCTTCTCTCTGAGTAA 59.236 40.000 0.00 0.33 0.00 2.24
379 390 4.138290 AGTCAACGTTCTCTTCTCTCTGA 58.862 43.478 0.00 0.00 0.00 3.27
562 582 3.304794 CGAAAGACGTCCAGAGAGAAACT 60.305 47.826 13.01 0.00 37.22 2.66
571 591 2.437343 GCGAGCGAAAGACGTCCAG 61.437 63.158 13.01 2.28 44.60 3.86
626 646 6.158023 TCTCAAAGGGTTAGTTCGATATCC 57.842 41.667 0.00 0.00 0.00 2.59
627 647 8.388853 GTTTTCTCAAAGGGTTAGTTCGATATC 58.611 37.037 0.00 0.00 0.00 1.63
636 660 5.377478 AGAGGTGTTTTCTCAAAGGGTTAG 58.623 41.667 0.00 0.00 33.92 2.34
667 691 1.290955 TCGGTCATCGAACCACACC 59.709 57.895 7.06 0.16 45.86 4.16
679 703 5.646577 TTTCTTTTTCTTTTGGTCGGTCA 57.353 34.783 0.00 0.00 0.00 4.02
719 745 7.469537 TCCTTTCTTTTCTGGTACACAAAAA 57.530 32.000 0.00 0.00 35.92 1.94
764 790 2.420547 GCTCACTCATGGACTTGGCATA 60.421 50.000 0.00 0.00 0.00 3.14
791 823 4.473199 CGCCATGTGATCATTCATTCATC 58.527 43.478 0.00 0.00 33.56 2.92
866 922 3.490759 CGTGCGTGTGATGGAGCC 61.491 66.667 0.00 0.00 0.00 4.70
926 993 3.151022 GGGCGGTCAGAGAGAGGG 61.151 72.222 0.00 0.00 0.00 4.30
948 1030 4.047059 AATGCGCCTGTGCTGTGC 62.047 61.111 4.18 0.00 39.63 4.57
950 1032 3.367743 CCAATGCGCCTGTGCTGT 61.368 61.111 4.18 0.00 35.36 4.40
951 1033 3.367743 ACCAATGCGCCTGTGCTG 61.368 61.111 4.18 0.00 35.36 4.41
1046 1147 2.750637 GCTGCTGCTGATGCTGGT 60.751 61.111 10.92 0.00 40.48 4.00
1047 1148 3.877357 CGCTGCTGCTGATGCTGG 61.877 66.667 14.03 0.00 40.48 4.85
1084 1194 2.090324 TGATGAGGTCCTCCATCTCCAT 60.090 50.000 16.60 1.48 35.89 3.41
1182 1292 3.196207 ATCGGATCGGCAATGGGGG 62.196 63.158 0.00 0.00 0.00 5.40
1183 1293 1.672356 GATCGGATCGGCAATGGGG 60.672 63.158 1.62 0.00 0.00 4.96
1266 1380 0.598065 AAGCACCAAATCCGTTGAGC 59.402 50.000 0.00 0.00 39.87 4.26
1399 1532 2.046292 GAGAGAGAGGAGGAATTGGGG 58.954 57.143 0.00 0.00 0.00 4.96
1401 1534 2.046292 GGGAGAGAGAGGAGGAATTGG 58.954 57.143 0.00 0.00 0.00 3.16
1411 1544 2.100584 CGTTGAATGGAGGGAGAGAGAG 59.899 54.545 0.00 0.00 0.00 3.20
1427 1560 4.755411 CCTAGATGTAAAAGAGGCGTTGA 58.245 43.478 0.00 0.00 0.00 3.18
1430 1563 3.180891 GCCTAGATGTAAAAGAGGCGT 57.819 47.619 0.00 0.00 43.05 5.68
1497 1683 1.897225 TTGCTGGAGGAGAGCTGCTC 61.897 60.000 21.72 21.72 45.76 4.26
1498 1684 1.273269 ATTGCTGGAGGAGAGCTGCT 61.273 55.000 0.00 0.00 37.35 4.24
1500 1686 2.015587 GAAATTGCTGGAGGAGAGCTG 58.984 52.381 0.00 0.00 37.35 4.24
1501 1687 1.064832 GGAAATTGCTGGAGGAGAGCT 60.065 52.381 0.00 0.00 37.35 4.09
1502 1688 1.340405 TGGAAATTGCTGGAGGAGAGC 60.340 52.381 0.00 0.00 36.95 4.09
1503 1689 2.795231 TGGAAATTGCTGGAGGAGAG 57.205 50.000 0.00 0.00 0.00 3.20
1504 1690 2.309755 ACATGGAAATTGCTGGAGGAGA 59.690 45.455 0.00 0.00 0.00 3.71
1505 1691 2.686915 GACATGGAAATTGCTGGAGGAG 59.313 50.000 0.00 0.00 0.00 3.69
1506 1692 2.309755 AGACATGGAAATTGCTGGAGGA 59.690 45.455 0.00 0.00 0.00 3.71
1507 1693 2.731572 AGACATGGAAATTGCTGGAGG 58.268 47.619 0.00 0.00 0.00 4.30
1508 1694 4.796038 AAAGACATGGAAATTGCTGGAG 57.204 40.909 0.00 0.00 0.00 3.86
1509 1695 5.540911 GAAAAAGACATGGAAATTGCTGGA 58.459 37.500 0.00 0.00 0.00 3.86
1511 1697 4.984161 ACGAAAAAGACATGGAAATTGCTG 59.016 37.500 0.00 0.00 0.00 4.41
1545 1731 3.057526 AGCTGTAACCGAAAAATCAAGGC 60.058 43.478 0.00 0.00 0.00 4.35
1546 1732 4.215399 TGAGCTGTAACCGAAAAATCAAGG 59.785 41.667 0.00 0.00 0.00 3.61
1670 1880 5.269991 TCTTATATTATGGGACGGAGGGAG 58.730 45.833 0.00 0.00 0.00 4.30
1671 1881 5.279562 TCTTATATTATGGGACGGAGGGA 57.720 43.478 0.00 0.00 0.00 4.20
1672 1882 5.623824 CGTTCTTATATTATGGGACGGAGGG 60.624 48.000 0.00 0.00 0.00 4.30
1673 1883 5.047519 ACGTTCTTATATTATGGGACGGAGG 60.048 44.000 13.18 0.00 0.00 4.30
1674 1884 6.022163 ACGTTCTTATATTATGGGACGGAG 57.978 41.667 13.18 0.00 0.00 4.63
1675 1885 6.409524 AACGTTCTTATATTATGGGACGGA 57.590 37.500 0.00 0.00 0.00 4.69
1676 1886 7.486802 AAAACGTTCTTATATTATGGGACGG 57.513 36.000 0.00 1.76 0.00 4.79
1701 1911 9.426837 AGCGTTTTTGACATTAGTATAGTGTAA 57.573 29.630 0.00 0.00 41.90 2.41
1702 1912 8.991243 AGCGTTTTTGACATTAGTATAGTGTA 57.009 30.769 0.00 0.00 41.90 2.90
1703 1913 7.817962 AGAGCGTTTTTGACATTAGTATAGTGT 59.182 33.333 0.00 0.00 44.70 3.55
1704 1914 8.186178 AGAGCGTTTTTGACATTAGTATAGTG 57.814 34.615 0.00 0.00 34.08 2.74
1705 1915 8.773404 AAGAGCGTTTTTGACATTAGTATAGT 57.227 30.769 0.00 0.00 0.00 2.12
1714 1924 7.250569 CCACAATATAAGAGCGTTTTTGACAT 58.749 34.615 0.00 0.00 0.00 3.06
1725 1935 4.503991 CCCTCTGTCCCACAATATAAGAGC 60.504 50.000 0.00 0.00 0.00 4.09
1726 1936 4.901849 TCCCTCTGTCCCACAATATAAGAG 59.098 45.833 0.00 0.00 0.00 2.85
1732 1942 4.631234 ACTATTCCCTCTGTCCCACAATA 58.369 43.478 0.00 0.00 0.00 1.90
1736 1946 3.610911 CAAACTATTCCCTCTGTCCCAC 58.389 50.000 0.00 0.00 0.00 4.61
1742 1952 5.734720 TCTACTTGCAAACTATTCCCTCTG 58.265 41.667 0.00 0.00 0.00 3.35
1743 1953 6.374417 TTCTACTTGCAAACTATTCCCTCT 57.626 37.500 0.00 0.00 0.00 3.69
1746 1956 4.700213 TGCTTCTACTTGCAAACTATTCCC 59.300 41.667 0.00 0.00 36.15 3.97
1747 1957 5.880054 TGCTTCTACTTGCAAACTATTCC 57.120 39.130 0.00 0.00 36.15 3.01
1748 1958 8.748380 AAAATGCTTCTACTTGCAAACTATTC 57.252 30.769 0.00 0.00 42.74 1.75
1749 1959 9.846248 CTAAAATGCTTCTACTTGCAAACTATT 57.154 29.630 0.00 0.00 42.74 1.73
1750 1960 8.462016 CCTAAAATGCTTCTACTTGCAAACTAT 58.538 33.333 0.00 0.00 42.74 2.12
1752 1962 6.490040 TCCTAAAATGCTTCTACTTGCAAACT 59.510 34.615 0.00 0.00 42.74 2.66
1757 1967 9.455847 CAATTATCCTAAAATGCTTCTACTTGC 57.544 33.333 0.00 0.00 0.00 4.01
1778 2024 8.911918 TTCTCCTACTTGCAAACTAACAATTA 57.088 30.769 0.00 0.00 0.00 1.40
1806 2052 3.701040 GGAAGGCATTTGGAGCTTCATTA 59.299 43.478 0.00 0.00 0.00 1.90
1962 2208 6.006275 TGTCCCCAAAATTTGAAAAATGGA 57.994 33.333 7.37 0.99 0.00 3.41
1963 2209 6.705863 TTGTCCCCAAAATTTGAAAAATGG 57.294 33.333 7.37 0.00 0.00 3.16
2082 2328 4.043596 AGAAGGAAGGGCTGATCATTACT 58.956 43.478 0.00 0.00 0.00 2.24
2167 2429 0.597118 TTCTGCAAAATGCCGTGTGC 60.597 50.000 0.00 0.00 44.23 4.57
2226 2488 1.757731 TGCAAACTGGGCAGCAAGT 60.758 52.632 0.00 0.00 36.11 3.16
2259 2521 2.268920 GCTGCATGAACCCTCCGA 59.731 61.111 0.00 0.00 0.00 4.55
2371 2633 8.028938 AGAAAATAAGACAACACAACCATATGC 58.971 33.333 0.00 0.00 0.00 3.14
2391 2659 5.411977 CACTGATCAGACTGCAAGAGAAAAT 59.588 40.000 29.27 0.00 37.43 1.82
2427 2695 5.127031 AGCAAAGGTTTCACACAAATACAGT 59.873 36.000 0.00 0.00 0.00 3.55
2428 2696 5.459762 CAGCAAAGGTTTCACACAAATACAG 59.540 40.000 0.00 0.00 0.00 2.74
2430 2698 4.209080 GCAGCAAAGGTTTCACACAAATAC 59.791 41.667 0.00 0.00 0.00 1.89
2431 2699 4.367450 GCAGCAAAGGTTTCACACAAATA 58.633 39.130 0.00 0.00 0.00 1.40
2432 2700 3.197265 GCAGCAAAGGTTTCACACAAAT 58.803 40.909 0.00 0.00 0.00 2.32
2433 2701 2.615869 GCAGCAAAGGTTTCACACAAA 58.384 42.857 0.00 0.00 0.00 2.83
2434 2702 1.468908 CGCAGCAAAGGTTTCACACAA 60.469 47.619 0.00 0.00 0.00 3.33
2435 2703 0.100325 CGCAGCAAAGGTTTCACACA 59.900 50.000 0.00 0.00 0.00 3.72
2436 2704 0.594796 CCGCAGCAAAGGTTTCACAC 60.595 55.000 0.00 0.00 0.00 3.82
2437 2705 1.732917 CCGCAGCAAAGGTTTCACA 59.267 52.632 0.00 0.00 0.00 3.58
2438 2706 1.007387 CCCGCAGCAAAGGTTTCAC 60.007 57.895 0.00 0.00 0.00 3.18
2449 2717 2.344129 GGCTAGGATACCCGCAGC 59.656 66.667 0.00 0.00 41.66 5.25
2450 2718 1.668294 CTGGCTAGGATACCCGCAG 59.332 63.158 0.00 0.00 37.58 5.18
2451 2719 2.507854 GCTGGCTAGGATACCCGCA 61.508 63.158 0.00 0.00 37.58 5.69
2452 2720 1.759459 AAGCTGGCTAGGATACCCGC 61.759 60.000 0.00 0.00 37.58 6.13
2453 2721 0.759346 AAAGCTGGCTAGGATACCCG 59.241 55.000 0.00 0.00 37.58 5.28
2454 2722 1.768870 TCAAAGCTGGCTAGGATACCC 59.231 52.381 0.00 0.00 37.17 3.69
2455 2723 2.808567 GCTCAAAGCTGGCTAGGATACC 60.809 54.545 0.00 0.00 38.45 2.73
2456 2724 2.158900 TGCTCAAAGCTGGCTAGGATAC 60.159 50.000 0.00 0.00 42.97 2.24
2457 2725 2.118679 TGCTCAAAGCTGGCTAGGATA 58.881 47.619 0.00 0.00 42.97 2.59
2458 2726 0.914644 TGCTCAAAGCTGGCTAGGAT 59.085 50.000 0.00 0.00 42.97 3.24
2459 2727 0.692476 TTGCTCAAAGCTGGCTAGGA 59.308 50.000 0.00 0.00 42.97 2.94
2460 2728 1.674962 GATTGCTCAAAGCTGGCTAGG 59.325 52.381 0.00 0.00 42.97 3.02
2461 2729 2.355132 CAGATTGCTCAAAGCTGGCTAG 59.645 50.000 0.00 0.00 46.44 3.42
2462 2730 2.362736 CAGATTGCTCAAAGCTGGCTA 58.637 47.619 0.11 0.00 46.44 3.93
2463 2731 1.174783 CAGATTGCTCAAAGCTGGCT 58.825 50.000 0.11 0.00 46.44 4.75
2464 2732 3.715854 CAGATTGCTCAAAGCTGGC 57.284 52.632 0.11 0.00 46.44 4.85
2467 2735 7.609532 AGAACTAAATACAGATTGCTCAAAGCT 59.390 33.333 0.11 0.00 42.97 3.74
2473 2741 8.940952 AGAACAAGAACTAAATACAGATTGCTC 58.059 33.333 0.00 0.00 0.00 4.26
2479 2747 9.698309 CTTCTGAGAACAAGAACTAAATACAGA 57.302 33.333 0.00 0.00 0.00 3.41
2487 2755 8.816894 ACCAATATCTTCTGAGAACAAGAACTA 58.183 33.333 0.00 0.00 35.07 2.24
2502 2770 7.080724 GCTGCATAAAAGCTACCAATATCTTC 58.919 38.462 0.00 0.00 37.69 2.87
2594 2864 5.220416 GCAACACGTAAATCTACATCTGGAC 60.220 44.000 0.00 0.00 0.00 4.02
2604 2874 5.294356 TGTGAAGTAGCAACACGTAAATCT 58.706 37.500 0.00 0.00 37.35 2.40
2629 2902 1.555741 GAATGCGCCGCTTTGCAAAA 61.556 50.000 15.26 0.00 45.45 2.44
2658 2931 8.391106 GGTAGAATCTACAACTGCACATAAAAG 58.609 37.037 20.57 0.00 0.00 2.27
2659 2932 7.880713 TGGTAGAATCTACAACTGCACATAAAA 59.119 33.333 20.57 0.00 0.00 1.52
2675 2948 6.614906 AGAGAACAGGATTGATGGTAGAATCT 59.385 38.462 0.00 0.00 0.00 2.40
2689 2962 4.808414 TTCAATCGACAGAGAACAGGAT 57.192 40.909 0.00 0.00 0.00 3.24
2738 3017 4.587584 TGCAATCTGCTCAACAAAATCA 57.412 36.364 0.00 0.00 45.31 2.57
2915 3194 6.971726 TCACCGTCTTATACCTGACATATT 57.028 37.500 0.00 0.00 33.18 1.28
3036 3319 2.401766 GGCGGTGCATTCTGTCCAG 61.402 63.158 0.00 0.00 0.00 3.86
3129 3412 0.040058 TCCCTCACAGCATTTGCCAT 59.960 50.000 0.00 0.00 43.38 4.40
3130 3413 0.895100 GTCCCTCACAGCATTTGCCA 60.895 55.000 0.00 0.00 43.38 4.92
3131 3414 0.610232 AGTCCCTCACAGCATTTGCC 60.610 55.000 0.00 0.00 43.38 4.52
3257 3545 9.577110 AGAACAACATGCATGTAAGAAATATTG 57.423 29.630 31.55 23.11 40.80 1.90
3321 3900 4.322953 CCCTATTTGCTGAAACCTTTGCAT 60.323 41.667 0.00 0.00 35.27 3.96
3511 4096 7.346751 AGAAGAAAATGTGAAAAGGCTACAA 57.653 32.000 0.00 0.00 0.00 2.41
3640 4230 2.093941 CAGTTGAGCTTCTGATCTTGCG 59.906 50.000 8.24 0.00 34.02 4.85
3695 4289 2.431419 GGGAAGAGCTAACTGGTAGGAC 59.569 54.545 1.31 0.00 0.00 3.85
3701 4311 0.179097 GAGCGGGAAGAGCTAACTGG 60.179 60.000 0.00 0.00 46.13 4.00
3711 4321 2.417933 CACAAATGAAGAGAGCGGGAAG 59.582 50.000 0.00 0.00 0.00 3.46
3714 4324 2.099141 TCACAAATGAAGAGAGCGGG 57.901 50.000 0.00 0.00 0.00 6.13
3716 4326 3.242349 GCAGATCACAAATGAAGAGAGCG 60.242 47.826 0.00 0.00 38.69 5.03
3724 4334 2.358015 TGCGATGCAGATCACAAATGA 58.642 42.857 0.00 0.00 34.85 2.57
3725 4335 2.836479 TGCGATGCAGATCACAAATG 57.164 45.000 0.00 0.00 33.32 2.32
3726 4336 5.458015 CAATATGCGATGCAGATCACAAAT 58.542 37.500 0.00 0.00 39.68 2.32
3727 4337 4.790444 GCAATATGCGATGCAGATCACAAA 60.790 41.667 0.00 0.00 39.68 2.83
3782 4393 3.769300 TCGACATTCTCAATCCTTCCTCA 59.231 43.478 0.00 0.00 0.00 3.86
3837 4448 4.716784 ACTCTCAGCACCACCAATAGATTA 59.283 41.667 0.00 0.00 0.00 1.75
3839 4450 3.110705 ACTCTCAGCACCACCAATAGAT 58.889 45.455 0.00 0.00 0.00 1.98
3917 4528 5.652891 CAGAGTAGTTGTGGTGGTAGATACT 59.347 44.000 0.00 0.00 0.00 2.12
4107 4718 0.957395 GACACCGTGTCCTCCGACTA 60.957 60.000 19.30 0.00 41.37 2.59
4148 4759 0.875059 GAGCAACGACCTCCTTTTGG 59.125 55.000 0.00 0.00 42.21 3.28
4169 4780 4.553323 CTTTTCATGACAAAGCCTTCCTG 58.447 43.478 13.67 0.00 0.00 3.86
4178 4789 4.405358 AGCTTTGGTCCTTTTCATGACAAA 59.595 37.500 0.00 0.00 33.09 2.83
4234 4845 5.048434 CACTATGATCCTCGCATCAGACTAA 60.048 44.000 0.00 0.00 36.22 2.24
4242 4858 3.306364 GCCTAACACTATGATCCTCGCAT 60.306 47.826 0.00 0.00 0.00 4.73
4246 4862 3.556004 GGCAGCCTAACACTATGATCCTC 60.556 52.174 3.29 0.00 0.00 3.71
4254 4870 0.902531 GTGAGGGCAGCCTAACACTA 59.097 55.000 12.43 0.00 0.00 2.74
4256 4872 0.036875 AAGTGAGGGCAGCCTAACAC 59.963 55.000 12.43 17.67 0.00 3.32
4280 4896 2.181525 CGGGCAAAAGGAATGCGG 59.818 61.111 0.00 0.00 44.75 5.69
4290 4917 5.238432 CACTCATTAATAGTATGCGGGCAAA 59.762 40.000 0.00 0.00 0.00 3.68
4291 4918 4.754618 CACTCATTAATAGTATGCGGGCAA 59.245 41.667 0.00 0.00 0.00 4.52
4292 4919 4.314961 CACTCATTAATAGTATGCGGGCA 58.685 43.478 0.00 0.00 0.00 5.36
4293 4920 3.684788 CCACTCATTAATAGTATGCGGGC 59.315 47.826 0.00 0.00 0.00 6.13
4294 4921 4.894784 ACCACTCATTAATAGTATGCGGG 58.105 43.478 0.00 0.00 0.00 6.13
4295 4922 6.481976 TCAAACCACTCATTAATAGTATGCGG 59.518 38.462 0.00 0.00 0.00 5.69
4296 4923 7.477144 TCAAACCACTCATTAATAGTATGCG 57.523 36.000 0.00 0.00 0.00 4.73
4297 4924 8.840321 ACATCAAACCACTCATTAATAGTATGC 58.160 33.333 0.00 0.00 0.00 3.14
4299 4926 8.840321 GCACATCAAACCACTCATTAATAGTAT 58.160 33.333 0.00 0.00 0.00 2.12
4300 4927 7.826744 TGCACATCAAACCACTCATTAATAGTA 59.173 33.333 0.00 0.00 0.00 1.82
4301 4928 6.658816 TGCACATCAAACCACTCATTAATAGT 59.341 34.615 0.00 0.00 0.00 2.12
4302 4929 7.066163 TCTGCACATCAAACCACTCATTAATAG 59.934 37.037 0.00 0.00 0.00 1.73
4303 4930 6.883756 TCTGCACATCAAACCACTCATTAATA 59.116 34.615 0.00 0.00 0.00 0.98
4304 4931 5.711506 TCTGCACATCAAACCACTCATTAAT 59.288 36.000 0.00 0.00 0.00 1.40
4343 4970 5.236478 CCATCGCCTTTGTTAAAGTATCGAT 59.764 40.000 2.16 2.16 40.59 3.59
4348 4975 5.941058 TGATTCCATCGCCTTTGTTAAAGTA 59.059 36.000 0.00 0.00 36.77 2.24
4369 4996 3.645687 GTCCCATCTTCTTAGCCTCTGAT 59.354 47.826 0.00 0.00 0.00 2.90
4388 5015 2.044806 ATGGCAGCTACATCCCGTCC 62.045 60.000 0.00 0.00 0.00 4.79
4540 5178 9.212641 TGTTTATCTCAAAATCTCAACAGAGAG 57.787 33.333 1.47 0.00 41.41 3.20
4568 5207 3.676646 GGAGTTTGAAACAAGCATGATGC 59.323 43.478 9.89 9.89 45.46 3.91
4689 5340 7.633789 AGAGATGCTCCAAGGTCTTTTTAATA 58.366 34.615 0.00 0.00 0.00 0.98
4712 5363 6.371548 GCCATGATTCAACTAACTACACAAGA 59.628 38.462 0.00 0.00 0.00 3.02
4761 5412 7.721286 ATGTCTTCTTGTTTTCTCTACACAG 57.279 36.000 0.00 0.00 0.00 3.66
4813 5475 2.550277 TGATTAGGGTCAGGCTCAGA 57.450 50.000 0.00 0.00 0.00 3.27
4818 5480 2.213499 CACGATTGATTAGGGTCAGGC 58.787 52.381 0.00 0.00 0.00 4.85
4824 5486 3.753294 AGTAGGCACGATTGATTAGGG 57.247 47.619 0.00 0.00 0.00 3.53
4826 5488 6.682746 AGATGTAGTAGGCACGATTGATTAG 58.317 40.000 0.00 0.00 0.00 1.73
4827 5489 6.567891 CGAGATGTAGTAGGCACGATTGATTA 60.568 42.308 0.00 0.00 0.00 1.75
4828 5490 5.533482 GAGATGTAGTAGGCACGATTGATT 58.467 41.667 0.00 0.00 0.00 2.57
4829 5491 4.320567 CGAGATGTAGTAGGCACGATTGAT 60.321 45.833 0.00 0.00 0.00 2.57
4830 5492 3.003378 CGAGATGTAGTAGGCACGATTGA 59.997 47.826 0.00 0.00 0.00 2.57
4831 5493 3.243101 ACGAGATGTAGTAGGCACGATTG 60.243 47.826 0.00 0.00 0.00 2.67
4832 5494 2.950309 ACGAGATGTAGTAGGCACGATT 59.050 45.455 0.00 0.00 0.00 3.34
4939 5623 5.280945 ACAAAGTGTTTCAATTCCACGATG 58.719 37.500 0.00 0.00 34.34 3.84
4950 5634 7.940137 ACCATACCTATACAACAAAGTGTTTCA 59.060 33.333 0.00 0.00 38.77 2.69
5020 5704 4.215399 GCTAGCATAAAACACCACACAAGA 59.785 41.667 10.63 0.00 0.00 3.02
5111 5820 6.176183 CAGTAGACAGATTGGAATTCACCTT 58.824 40.000 7.93 0.00 0.00 3.50
5133 5842 4.324402 GGTTTCGATGCTGCATTTTTACAG 59.676 41.667 17.36 3.33 36.96 2.74
5141 5850 4.158394 ACTTAAATGGTTTCGATGCTGCAT 59.842 37.500 16.20 16.20 0.00 3.96
5144 5853 6.021596 GTGTACTTAAATGGTTTCGATGCTG 58.978 40.000 0.00 0.00 0.00 4.41
5145 5854 5.703592 TGTGTACTTAAATGGTTTCGATGCT 59.296 36.000 0.00 0.00 0.00 3.79
5146 5855 5.793457 GTGTGTACTTAAATGGTTTCGATGC 59.207 40.000 0.00 0.00 0.00 3.91
5147 5856 6.795114 GTGTGTGTACTTAAATGGTTTCGATG 59.205 38.462 0.00 0.00 0.00 3.84
5148 5857 6.483974 TGTGTGTGTACTTAAATGGTTTCGAT 59.516 34.615 0.00 0.00 0.00 3.59
5149 5858 5.816258 TGTGTGTGTACTTAAATGGTTTCGA 59.184 36.000 0.00 0.00 0.00 3.71
5150 5859 5.905181 GTGTGTGTGTACTTAAATGGTTTCG 59.095 40.000 0.00 0.00 0.00 3.46
5155 5864 5.295787 AGTGTGTGTGTGTGTACTTAAATGG 59.704 40.000 0.00 0.00 0.00 3.16
5161 5870 3.430374 GGAGAGTGTGTGTGTGTGTACTT 60.430 47.826 0.00 0.00 0.00 2.24
5164 5873 2.384828 AGGAGAGTGTGTGTGTGTGTA 58.615 47.619 0.00 0.00 0.00 2.90
5167 5876 2.101582 GAGAAGGAGAGTGTGTGTGTGT 59.898 50.000 0.00 0.00 0.00 3.72
5169 5878 1.689273 GGAGAAGGAGAGTGTGTGTGT 59.311 52.381 0.00 0.00 0.00 3.72
5171 5880 1.133009 AGGGAGAAGGAGAGTGTGTGT 60.133 52.381 0.00 0.00 0.00 3.72
5173 5882 1.431243 AGAGGGAGAAGGAGAGTGTGT 59.569 52.381 0.00 0.00 0.00 3.72
5175 5884 2.381961 AGAAGAGGGAGAAGGAGAGTGT 59.618 50.000 0.00 0.00 0.00 3.55
5177 5886 3.336694 AGAAGAAGAGGGAGAAGGAGAGT 59.663 47.826 0.00 0.00 0.00 3.24
5183 5892 2.452505 ACGGAGAAGAAGAGGGAGAAG 58.547 52.381 0.00 0.00 0.00 2.85
5184 5893 2.606751 ACGGAGAAGAAGAGGGAGAA 57.393 50.000 0.00 0.00 0.00 2.87
5189 5898 3.761752 AGAGAGAAACGGAGAAGAAGAGG 59.238 47.826 0.00 0.00 0.00 3.69
5255 5971 2.644151 AGGAAACATACTCCCCCAAGT 58.356 47.619 0.00 0.00 32.95 3.16
5263 5979 7.431249 TGATATGTCGGTAAGGAAACATACTC 58.569 38.462 0.00 0.00 37.41 2.59
5273 5989 8.777865 ATAACATGAATGATATGTCGGTAAGG 57.222 34.615 0.00 0.00 37.77 2.69
5329 6057 7.715657 TCAGAGAAACACAAAGCAAATGTATT 58.284 30.769 0.00 0.00 0.00 1.89
5333 6061 6.038356 ACTTCAGAGAAACACAAAGCAAATG 58.962 36.000 0.00 0.00 0.00 2.32
5339 6067 6.863126 ACAAACAACTTCAGAGAAACACAAAG 59.137 34.615 0.00 0.00 0.00 2.77
5397 6125 0.394488 TCAGTGTGCACGGGGAAAAA 60.394 50.000 13.13 0.00 36.20 1.94
5401 6129 4.293648 CGTCAGTGTGCACGGGGA 62.294 66.667 13.13 6.20 36.20 4.81
5403 6131 2.587753 AACGTCAGTGTGCACGGG 60.588 61.111 13.13 4.03 40.43 5.28
5412 6140 1.337823 GGCCAGACATACAACGTCAGT 60.338 52.381 0.00 0.00 35.77 3.41
5418 6146 1.359848 CACTCGGCCAGACATACAAC 58.640 55.000 2.24 0.00 0.00 3.32
5443 6171 4.803426 GAGCCACTCAGACGCCCG 62.803 72.222 0.00 0.00 0.00 6.13
5477 6205 1.752198 CCAGTCCCACTCGACCAAA 59.248 57.895 0.00 0.00 32.91 3.28
5482 6210 4.671590 TCGCCCAGTCCCACTCGA 62.672 66.667 0.00 0.00 0.00 4.04
5491 6219 2.579201 CAATCGTCCTCGCCCAGT 59.421 61.111 0.00 0.00 36.96 4.00
5492 6220 2.202932 CCAATCGTCCTCGCCCAG 60.203 66.667 0.00 0.00 36.96 4.45
5493 6221 3.000819 ACCAATCGTCCTCGCCCA 61.001 61.111 0.00 0.00 36.96 5.36
5494 6222 2.202892 GACCAATCGTCCTCGCCC 60.203 66.667 0.00 0.00 35.23 6.13
5507 6235 1.373435 CGGCTTAAGTGGTGGACCA 59.627 57.895 4.02 0.00 45.30 4.02
5508 6236 0.953960 CACGGCTTAAGTGGTGGACC 60.954 60.000 15.90 2.55 36.06 4.46
5509 6237 2.540145 CACGGCTTAAGTGGTGGAC 58.460 57.895 15.90 0.00 36.06 4.02
5515 6243 1.495951 GAACGCCACGGCTTAAGTG 59.504 57.895 6.48 0.00 39.32 3.16
5516 6244 2.025418 CGAACGCCACGGCTTAAGT 61.025 57.895 6.48 0.00 39.32 2.24
5517 6245 1.735198 TCGAACGCCACGGCTTAAG 60.735 57.895 6.48 0.00 39.32 1.85
5518 6246 2.023223 GTCGAACGCCACGGCTTAA 61.023 57.895 6.48 0.00 39.32 1.85
5519 6247 2.431260 GTCGAACGCCACGGCTTA 60.431 61.111 6.48 0.00 39.32 3.09
5523 6251 4.986587 TGTCGTCGAACGCCACGG 62.987 66.667 0.00 0.00 42.21 4.94
5524 6252 2.983977 CTTGTCGTCGAACGCCACG 61.984 63.158 0.00 0.00 42.21 4.94
5525 6253 0.661187 TACTTGTCGTCGAACGCCAC 60.661 55.000 0.00 0.00 42.21 5.01
5526 6254 0.030504 TTACTTGTCGTCGAACGCCA 59.969 50.000 0.00 0.00 42.21 5.69
5527 6255 1.130955 TTTACTTGTCGTCGAACGCC 58.869 50.000 0.00 0.00 42.21 5.68
5528 6256 2.909076 TTTTACTTGTCGTCGAACGC 57.091 45.000 0.00 0.00 42.21 4.84
5529 6257 4.618338 TGATTTTACTTGTCGTCGAACG 57.382 40.909 0.00 0.00 44.19 3.95
5530 6258 6.148270 TCATGATTTTACTTGTCGTCGAAC 57.852 37.500 0.00 0.00 0.00 3.95
5531 6259 6.183360 CCATCATGATTTTACTTGTCGTCGAA 60.183 38.462 5.16 0.00 0.00 3.71
5532 6260 5.290885 CCATCATGATTTTACTTGTCGTCGA 59.709 40.000 5.16 0.00 0.00 4.20
5533 6261 5.492854 CCATCATGATTTTACTTGTCGTCG 58.507 41.667 5.16 0.00 0.00 5.12
5534 6262 5.730568 GCCCATCATGATTTTACTTGTCGTC 60.731 44.000 5.16 0.00 0.00 4.20
5535 6263 4.096382 GCCCATCATGATTTTACTTGTCGT 59.904 41.667 5.16 0.00 0.00 4.34
5536 6264 4.601019 GCCCATCATGATTTTACTTGTCG 58.399 43.478 5.16 0.00 0.00 4.35
5537 6265 4.498009 CCGCCCATCATGATTTTACTTGTC 60.498 45.833 5.16 0.00 0.00 3.18
5538 6266 3.381272 CCGCCCATCATGATTTTACTTGT 59.619 43.478 5.16 0.00 0.00 3.16
5539 6267 3.243501 CCCGCCCATCATGATTTTACTTG 60.244 47.826 5.16 0.00 0.00 3.16
5540 6268 2.958355 CCCGCCCATCATGATTTTACTT 59.042 45.455 5.16 0.00 0.00 2.24
5541 6269 2.586425 CCCGCCCATCATGATTTTACT 58.414 47.619 5.16 0.00 0.00 2.24
5542 6270 1.000274 GCCCGCCCATCATGATTTTAC 60.000 52.381 5.16 0.00 0.00 2.01
5543 6271 1.327303 GCCCGCCCATCATGATTTTA 58.673 50.000 5.16 0.00 0.00 1.52
5544 6272 1.737355 CGCCCGCCCATCATGATTTT 61.737 55.000 5.16 0.00 0.00 1.82
5545 6273 2.195567 CGCCCGCCCATCATGATTT 61.196 57.895 5.16 0.00 0.00 2.17
5546 6274 2.050836 TACGCCCGCCCATCATGATT 62.051 55.000 5.16 0.00 0.00 2.57
5547 6275 2.454832 CTACGCCCGCCCATCATGAT 62.455 60.000 1.18 1.18 0.00 2.45
5548 6276 3.157949 TACGCCCGCCCATCATGA 61.158 61.111 0.00 0.00 0.00 3.07
5549 6277 2.666190 CTACGCCCGCCCATCATG 60.666 66.667 0.00 0.00 0.00 3.07
5550 6278 3.941188 CCTACGCCCGCCCATCAT 61.941 66.667 0.00 0.00 0.00 2.45
5556 6284 4.185286 AATTCCCCTACGCCCGCC 62.185 66.667 0.00 0.00 0.00 6.13
5557 6285 2.900337 CAATTCCCCTACGCCCGC 60.900 66.667 0.00 0.00 0.00 6.13
5558 6286 2.900337 GCAATTCCCCTACGCCCG 60.900 66.667 0.00 0.00 0.00 6.13
5559 6287 1.823899 CAGCAATTCCCCTACGCCC 60.824 63.158 0.00 0.00 0.00 6.13
5560 6288 1.095807 GTCAGCAATTCCCCTACGCC 61.096 60.000 0.00 0.00 0.00 5.68
5561 6289 1.429148 CGTCAGCAATTCCCCTACGC 61.429 60.000 0.00 0.00 0.00 4.42
5562 6290 1.429148 GCGTCAGCAATTCCCCTACG 61.429 60.000 0.00 0.00 44.35 3.51
5563 6291 2.394604 GCGTCAGCAATTCCCCTAC 58.605 57.895 0.00 0.00 44.35 3.18
5564 6292 4.954933 GCGTCAGCAATTCCCCTA 57.045 55.556 0.00 0.00 44.35 3.53
5574 6302 2.047274 TACCTGCTTGGCGTCAGC 60.047 61.111 4.76 4.76 44.18 4.26
5575 6303 1.448540 CCTACCTGCTTGGCGTCAG 60.449 63.158 0.00 0.00 40.22 3.51
5576 6304 2.214216 ACCTACCTGCTTGGCGTCA 61.214 57.895 0.00 0.00 40.22 4.35
5577 6305 1.741770 CACCTACCTGCTTGGCGTC 60.742 63.158 0.00 0.00 40.22 5.19
5578 6306 2.347490 CACCTACCTGCTTGGCGT 59.653 61.111 0.00 0.00 40.22 5.68
5579 6307 2.436646 CCACCTACCTGCTTGGCG 60.437 66.667 0.00 0.00 40.22 5.69
5580 6308 1.074951 AACCACCTACCTGCTTGGC 59.925 57.895 0.00 0.00 40.22 4.52
5581 6309 0.110486 ACAACCACCTACCTGCTTGG 59.890 55.000 0.00 0.00 42.93 3.61
5582 6310 1.981256 AACAACCACCTACCTGCTTG 58.019 50.000 0.00 0.00 0.00 4.01
5583 6311 2.306847 CAAACAACCACCTACCTGCTT 58.693 47.619 0.00 0.00 0.00 3.91
5584 6312 1.478654 CCAAACAACCACCTACCTGCT 60.479 52.381 0.00 0.00 0.00 4.24
5585 6313 0.958822 CCAAACAACCACCTACCTGC 59.041 55.000 0.00 0.00 0.00 4.85
5586 6314 1.616159 CCCAAACAACCACCTACCTG 58.384 55.000 0.00 0.00 0.00 4.00
5587 6315 0.481128 CCCCAAACAACCACCTACCT 59.519 55.000 0.00 0.00 0.00 3.08
5588 6316 0.479378 TCCCCAAACAACCACCTACC 59.521 55.000 0.00 0.00 0.00 3.18
5589 6317 2.368311 TTCCCCAAACAACCACCTAC 57.632 50.000 0.00 0.00 0.00 3.18
5590 6318 3.032459 GTTTTCCCCAAACAACCACCTA 58.968 45.455 0.00 0.00 43.93 3.08
5591 6319 1.834896 GTTTTCCCCAAACAACCACCT 59.165 47.619 0.00 0.00 43.93 4.00
5592 6320 1.134340 GGTTTTCCCCAAACAACCACC 60.134 52.381 0.00 0.00 46.01 4.61
5593 6321 2.319136 GGTTTTCCCCAAACAACCAC 57.681 50.000 0.00 0.00 46.01 4.16
5605 6333 4.841443 AACACGTCAAATAGGGTTTTCC 57.159 40.909 0.00 0.00 39.75 3.13
5606 6334 5.051307 GCAAAACACGTCAAATAGGGTTTTC 60.051 40.000 5.69 0.00 36.60 2.29
5607 6335 4.806775 GCAAAACACGTCAAATAGGGTTTT 59.193 37.500 3.10 3.10 38.54 2.43
5608 6336 4.364860 GCAAAACACGTCAAATAGGGTTT 58.635 39.130 0.00 0.00 0.00 3.27
5609 6337 3.549221 CGCAAAACACGTCAAATAGGGTT 60.549 43.478 0.00 0.00 0.00 4.11
5610 6338 2.031508 CGCAAAACACGTCAAATAGGGT 60.032 45.455 0.00 0.00 0.00 4.34
5611 6339 2.031508 ACGCAAAACACGTCAAATAGGG 60.032 45.455 0.00 0.00 40.28 3.53
5612 6340 3.262135 ACGCAAAACACGTCAAATAGG 57.738 42.857 0.00 0.00 40.28 2.57
5621 6349 1.837747 GACTGTTTGACGCAAAACACG 59.162 47.619 11.10 10.12 43.34 4.49
5622 6350 1.837747 CGACTGTTTGACGCAAAACAC 59.162 47.619 11.10 3.97 43.34 3.32
5623 6351 1.732809 TCGACTGTTTGACGCAAAACA 59.267 42.857 13.66 13.66 45.38 2.83
5624 6352 2.445453 TCGACTGTTTGACGCAAAAC 57.555 45.000 6.59 6.59 39.90 2.43
5625 6353 2.609916 TGATCGACTGTTTGACGCAAAA 59.390 40.909 6.59 0.00 35.03 2.44
5626 6354 2.205911 TGATCGACTGTTTGACGCAAA 58.794 42.857 0.00 1.63 34.12 3.68
5627 6355 1.859383 TGATCGACTGTTTGACGCAA 58.141 45.000 0.00 0.00 34.12 4.85
5628 6356 1.859383 TTGATCGACTGTTTGACGCA 58.141 45.000 0.00 0.00 34.12 5.24
5629 6357 3.155998 CAATTGATCGACTGTTTGACGC 58.844 45.455 0.00 0.00 34.12 5.19
5630 6358 3.155998 GCAATTGATCGACTGTTTGACG 58.844 45.455 10.34 0.00 35.33 4.35
5631 6359 3.908382 GTGCAATTGATCGACTGTTTGAC 59.092 43.478 10.34 0.00 0.00 3.18
5632 6360 3.563390 TGTGCAATTGATCGACTGTTTGA 59.437 39.130 10.34 0.00 0.00 2.69
5633 6361 3.665409 GTGTGCAATTGATCGACTGTTTG 59.335 43.478 10.34 0.00 0.00 2.93
5634 6362 3.314913 TGTGTGCAATTGATCGACTGTTT 59.685 39.130 10.34 0.00 0.00 2.83
5635 6363 2.877786 TGTGTGCAATTGATCGACTGTT 59.122 40.909 10.34 0.00 0.00 3.16
5636 6364 2.224079 GTGTGTGCAATTGATCGACTGT 59.776 45.455 10.34 0.00 0.00 3.55
5637 6365 2.223845 TGTGTGTGCAATTGATCGACTG 59.776 45.455 10.34 0.00 0.00 3.51
5638 6366 2.224079 GTGTGTGTGCAATTGATCGACT 59.776 45.455 10.34 0.00 0.00 4.18
5639 6367 2.574322 GTGTGTGTGCAATTGATCGAC 58.426 47.619 10.34 0.13 0.00 4.20
5640 6368 1.194322 CGTGTGTGTGCAATTGATCGA 59.806 47.619 10.34 0.00 0.00 3.59
5641 6369 1.194322 TCGTGTGTGTGCAATTGATCG 59.806 47.619 10.34 1.78 0.00 3.69
5642 6370 2.967459 TCGTGTGTGTGCAATTGATC 57.033 45.000 10.34 1.39 0.00 2.92
5643 6371 2.601979 CGTTCGTGTGTGTGCAATTGAT 60.602 45.455 10.34 0.00 0.00 2.57
5644 6372 1.267782 CGTTCGTGTGTGTGCAATTGA 60.268 47.619 10.34 0.00 0.00 2.57
5645 6373 1.111667 CGTTCGTGTGTGTGCAATTG 58.888 50.000 0.00 0.00 0.00 2.32
5646 6374 0.730265 ACGTTCGTGTGTGTGCAATT 59.270 45.000 0.00 0.00 0.00 2.32
5647 6375 0.027455 CACGTTCGTGTGTGTGCAAT 59.973 50.000 15.81 0.00 35.12 3.56
5648 6376 1.421877 CACGTTCGTGTGTGTGCAA 59.578 52.632 15.81 0.00 35.12 4.08
5649 6377 2.456948 CCACGTTCGTGTGTGTGCA 61.457 57.895 20.93 0.00 38.20 4.57
5650 6378 2.323105 CCACGTTCGTGTGTGTGC 59.677 61.111 20.93 0.00 38.20 4.57
5651 6379 3.010767 CCCACGTTCGTGTGTGTG 58.989 61.111 20.93 7.79 38.20 3.82
5652 6380 2.893404 GCCCACGTTCGTGTGTGT 60.893 61.111 20.93 0.00 38.20 3.72
5653 6381 3.995669 CGCCCACGTTCGTGTGTG 61.996 66.667 20.93 14.15 38.20 3.82
5654 6382 4.210093 TCGCCCACGTTCGTGTGT 62.210 61.111 20.93 0.00 41.18 3.72
5655 6383 3.403057 CTCGCCCACGTTCGTGTG 61.403 66.667 20.93 12.94 41.18 3.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.