Multiple sequence alignment - TraesCS2D01G550700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G550700 chr2D 100.000 5199 0 0 1 5199 626585238 626590436 0.000000e+00 9601.0
1 TraesCS2D01G550700 chr2D 84.697 2176 308 17 2077 4237 626170875 626173040 0.000000e+00 2150.0
2 TraesCS2D01G550700 chr2D 84.057 1750 264 12 2469 4214 626386238 626387976 0.000000e+00 1672.0
3 TraesCS2D01G550700 chr2D 83.229 1753 274 12 2469 4208 626424785 626423040 0.000000e+00 1591.0
4 TraesCS2D01G550700 chr2D 82.313 441 46 18 104 513 626426691 626426252 2.300000e-93 353.0
5 TraesCS2D01G550700 chr2D 80.442 317 54 4 1484 1797 626425640 626425329 8.700000e-58 235.0
6 TraesCS2D01G550700 chr2D 80.546 293 57 0 1492 1784 626170497 626170789 5.240000e-55 226.0
7 TraesCS2D01G550700 chr2D 90.361 166 16 0 716 881 626426432 626426267 8.770000e-53 219.0
8 TraesCS2D01G550700 chr2D 90.647 139 13 0 743 881 626585596 626585734 8.890000e-43 185.0
9 TraesCS2D01G550700 chr2D 90.647 139 13 0 359 497 626585980 626586118 8.890000e-43 185.0
10 TraesCS2D01G550700 chr2D 97.059 34 1 0 407 440 626585558 626585591 2.020000e-04 58.4
11 TraesCS2D01G550700 chr2D 97.059 34 1 0 321 354 626585644 626585677 2.020000e-04 58.4
12 TraesCS2D01G550700 chr2B 93.614 3758 193 16 747 4472 768051415 768055157 0.000000e+00 5566.0
13 TraesCS2D01G550700 chr2B 84.781 2142 300 17 2077 4202 767773919 767776050 0.000000e+00 2126.0
14 TraesCS2D01G550700 chr2B 83.286 1747 272 11 2469 4202 767891261 767893000 0.000000e+00 1591.0
15 TraesCS2D01G550700 chr2B 84.646 1003 139 12 3216 4214 768006165 768005174 0.000000e+00 985.0
16 TraesCS2D01G550700 chr2B 85.847 431 56 5 2039 2467 767890558 767890985 2.210000e-123 453.0
17 TraesCS2D01G550700 chr2B 92.058 277 10 7 238 513 768050683 768050948 3.800000e-101 379.0
18 TraesCS2D01G550700 chr2B 83.255 424 51 15 104 507 767889188 767889611 6.360000e-99 372.0
19 TraesCS2D01G550700 chr2B 87.542 297 30 2 4903 5199 768055828 768056117 2.320000e-88 337.0
20 TraesCS2D01G550700 chr2B 85.714 287 34 2 4909 5195 768100129 768100408 3.940000e-76 296.0
21 TraesCS2D01G550700 chr2B 93.785 177 11 0 534 710 458962298 458962474 3.090000e-67 267.0
22 TraesCS2D01G550700 chr2B 80.201 298 59 0 1492 1789 767933507 767933210 1.880000e-54 224.0
23 TraesCS2D01G550700 chr2B 88.024 167 12 2 94 253 768050506 768050671 1.910000e-44 191.0
24 TraesCS2D01G550700 chr2B 91.729 133 11 0 365 497 768051417 768051549 8.890000e-43 185.0
25 TraesCS2D01G550700 chr2B 87.349 166 10 4 716 881 767889447 767889601 4.140000e-41 180.0
26 TraesCS2D01G550700 chr2B 83.206 131 16 5 4468 4594 768055197 768055325 1.180000e-21 115.0
27 TraesCS2D01G550700 chr2B 90.909 66 6 0 4778 4843 136166455 136166520 7.170000e-14 89.8
28 TraesCS2D01G550700 chr2B 90.566 53 4 1 215 267 768050743 768050794 9.340000e-08 69.4
29 TraesCS2D01G550700 chr2B 97.059 34 1 0 321 354 768050843 768050876 2.020000e-04 58.4
30 TraesCS2D01G550700 chr2A 97.503 2203 54 1 2242 4444 757367348 757365147 0.000000e+00 3762.0
31 TraesCS2D01G550700 chr2A 96.987 2157 62 3 2286 4441 757332320 757334474 0.000000e+00 3620.0
32 TraesCS2D01G550700 chr2A 84.151 1754 260 8 2469 4210 756370379 756368632 0.000000e+00 1683.0
33 TraesCS2D01G550700 chr2A 93.823 939 29 13 1379 2290 757322572 757323508 0.000000e+00 1386.0
34 TraesCS2D01G550700 chr2A 93.238 843 32 10 1434 2252 757371590 757370749 0.000000e+00 1218.0
35 TraesCS2D01G550700 chr2A 95.588 680 23 5 710 1385 757321711 757322387 0.000000e+00 1083.0
36 TraesCS2D01G550700 chr2A 89.331 478 49 2 895 1371 757372065 757371589 2.680000e-167 599.0
37 TraesCS2D01G550700 chr2A 96.330 327 9 1 1 324 757320777 757321103 7.660000e-148 534.0
38 TraesCS2D01G550700 chr2A 89.594 394 41 0 2077 2470 756370859 756370466 7.770000e-138 501.0
39 TraesCS2D01G550700 chr2A 85.417 432 56 4 2039 2470 756028830 756029254 4.780000e-120 442.0
40 TraesCS2D01G550700 chr2A 87.356 261 24 4 4940 5199 757377017 757377269 1.830000e-74 291.0
41 TraesCS2D01G550700 chr2A 95.122 164 8 0 347 510 757321449 757321612 5.160000e-65 259.0
42 TraesCS2D01G550700 chr2A 81.633 294 52 2 1492 1784 756371237 756370945 5.200000e-60 243.0
43 TraesCS2D01G550700 chr2A 90.361 166 16 0 716 881 756134927 756134762 8.770000e-53 219.0
44 TraesCS2D01G550700 chr2A 91.083 157 13 1 357 513 756134902 756134747 1.470000e-50 211.0
45 TraesCS2D01G550700 chr2A 90.845 142 11 1 358 497 757321740 757321881 6.870000e-44 189.0
46 TraesCS2D01G550700 chr2A 86.620 142 19 0 740 881 757321458 757321599 1.940000e-34 158.0
47 TraesCS2D01G550700 chr2A 86.316 95 11 2 4841 4933 757372774 757372868 9.210000e-18 102.0
48 TraesCS2D01G550700 chr2A 97.674 43 1 0 215 257 757321077 757321119 2.010000e-09 75.0
49 TraesCS2D01G550700 chr2A 95.349 43 2 0 365 407 756135112 756135070 9.340000e-08 69.4
50 TraesCS2D01G550700 chr7A 80.648 1173 211 10 2728 3895 660544242 660545403 0.000000e+00 894.0
51 TraesCS2D01G550700 chr7B 79.085 1334 247 21 2728 4054 627952297 627953605 0.000000e+00 889.0
52 TraesCS2D01G550700 chr7B 89.189 74 7 1 4762 4834 411340729 411340656 1.990000e-14 91.6
53 TraesCS2D01G550700 chr7B 95.833 48 2 0 47 94 604327183 604327230 1.550000e-10 78.7
54 TraesCS2D01G550700 chr7D 78.845 1333 252 21 2728 4054 571709545 571710853 0.000000e+00 872.0
55 TraesCS2D01G550700 chr7D 94.475 181 9 1 534 714 514902018 514902197 1.430000e-70 278.0
56 TraesCS2D01G550700 chr7D 82.653 98 16 1 4638 4734 77366866 77366769 9.280000e-13 86.1
57 TraesCS2D01G550700 chr7D 87.879 66 8 0 4778 4843 559227176 559227241 1.550000e-10 78.7
58 TraesCS2D01G550700 chrUn 85.417 432 56 4 2039 2470 180889994 180890418 4.780000e-120 442.0
59 TraesCS2D01G550700 chrUn 85.417 432 56 4 2039 2470 321072522 321072098 4.780000e-120 442.0
60 TraesCS2D01G550700 chrUn 93.855 179 11 0 534 712 51492686 51492864 2.390000e-68 270.0
61 TraesCS2D01G550700 chrUn 93.855 179 11 0 534 712 348959336 348959158 2.390000e-68 270.0
62 TraesCS2D01G550700 chr1B 95.699 186 6 2 530 714 53647504 53647320 1.090000e-76 298.0
63 TraesCS2D01G550700 chr1B 92.432 185 12 2 534 717 502217513 502217330 3.990000e-66 263.0
64 TraesCS2D01G550700 chr4B 94.857 175 9 0 534 708 26626930 26626756 1.840000e-69 274.0
65 TraesCS2D01G550700 chr6A 93.820 178 11 0 534 711 195270323 195270146 8.580000e-68 268.0
66 TraesCS2D01G550700 chr6B 93.370 181 9 3 534 712 113707074 113707253 1.110000e-66 265.0
67 TraesCS2D01G550700 chr4D 81.159 207 26 8 4638 4843 49791809 49791615 2.510000e-33 154.0
68 TraesCS2D01G550700 chr3B 91.753 97 5 1 1 94 799441731 799441827 1.170000e-26 132.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G550700 chr2D 626585238 626590436 5198 False 9601.000000 9601 100.000000 1 5199 1 chr2D.!!$F2 5198
1 TraesCS2D01G550700 chr2D 626386238 626387976 1738 False 1672.000000 1672 84.057000 2469 4214 1 chr2D.!!$F1 1745
2 TraesCS2D01G550700 chr2D 626170497 626173040 2543 False 1188.000000 2150 82.621500 1492 4237 2 chr2D.!!$F3 2745
3 TraesCS2D01G550700 chr2D 626423040 626426691 3651 True 599.500000 1591 84.086250 104 4208 4 chr2D.!!$R1 4104
4 TraesCS2D01G550700 chr2B 767773919 767776050 2131 False 2126.000000 2126 84.781000 2077 4202 1 chr2B.!!$F3 2125
5 TraesCS2D01G550700 chr2B 768005174 768006165 991 True 985.000000 985 84.646000 3216 4214 1 chr2B.!!$R2 998
6 TraesCS2D01G550700 chr2B 768050506 768056117 5611 False 862.600000 5566 90.474750 94 5199 8 chr2B.!!$F6 5105
7 TraesCS2D01G550700 chr2B 767889188 767893000 3812 False 649.000000 1591 84.934250 104 4202 4 chr2B.!!$F5 4098
8 TraesCS2D01G550700 chr2A 757332320 757334474 2154 False 3620.000000 3620 96.987000 2286 4441 1 chr2A.!!$F2 2155
9 TraesCS2D01G550700 chr2A 757365147 757372065 6918 True 1859.666667 3762 93.357333 895 4444 3 chr2A.!!$R3 3549
10 TraesCS2D01G550700 chr2A 756368632 756371237 2605 True 809.000000 1683 85.126000 1492 4210 3 chr2A.!!$R2 2718
11 TraesCS2D01G550700 chr2A 757320777 757323508 2731 False 526.285714 1386 93.714571 1 2290 7 chr2A.!!$F5 2289
12 TraesCS2D01G550700 chr7A 660544242 660545403 1161 False 894.000000 894 80.648000 2728 3895 1 chr7A.!!$F1 1167
13 TraesCS2D01G550700 chr7B 627952297 627953605 1308 False 889.000000 889 79.085000 2728 4054 1 chr7B.!!$F2 1326
14 TraesCS2D01G550700 chr7D 571709545 571710853 1308 False 872.000000 872 78.845000 2728 4054 1 chr7D.!!$F3 1326

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
58 62 0.037790 GCATTGGCAAGGCGGTTTAA 60.038 50.000 21.68 0.0 40.72 1.52 F
177 188 1.159184 TACGTGGGGAGAGGGGTTT 59.841 57.895 0.00 0.0 0.00 3.27 F
1373 2106 0.030638 ATTGTGTTGCACTGTTCGGC 59.969 50.000 0.00 0.0 35.11 5.54 F
1375 2108 0.179070 TGTGTTGCACTGTTCGGCTA 60.179 50.000 0.00 0.0 35.11 3.93 F
3038 7710 0.389296 CAATGGCGTGTCCGAGTACA 60.389 55.000 0.00 0.0 37.80 2.90 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1347 2080 0.467844 AGTGCAACACAATCCTGCCA 60.468 50.000 0.00 0.0 41.43 4.92 R
2047 3011 0.955905 CATGCATGCCCATCGATCAA 59.044 50.000 14.93 0.0 0.00 2.57 R
3038 7710 2.594962 CGAAGAGGTTGTGCGCGTT 61.595 57.895 8.43 0.0 0.00 4.84 R
3496 8168 4.314440 AAGAAGAGCGGGCGTGCA 62.314 61.111 3.15 0.0 37.31 4.57 R
4699 9425 0.036294 CCTCTTCGTTCCCCTCCAAC 60.036 60.000 0.00 0.0 0.00 3.77 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 1.289109 ACGTGAAAATCGGACGGCTG 61.289 55.000 0.00 0.00 37.42 4.85
58 62 0.037790 GCATTGGCAAGGCGGTTTAA 60.038 50.000 21.68 0.00 40.72 1.52
85 89 4.698780 ACATGATTATCATCCGGCTGATTG 59.301 41.667 24.74 18.14 34.28 2.67
98 102 2.035961 GGCTGATTGGTAGTGCTATCGA 59.964 50.000 0.00 0.00 0.00 3.59
177 188 1.159184 TACGTGGGGAGAGGGGTTT 59.841 57.895 0.00 0.00 0.00 3.27
329 393 8.335532 AGAGAGATCTGAATCGTAATTCTAGG 57.664 38.462 0.00 0.00 41.63 3.02
330 394 7.942341 AGAGAGATCTGAATCGTAATTCTAGGT 59.058 37.037 0.00 0.00 41.63 3.08
331 395 8.472007 AGAGATCTGAATCGTAATTCTAGGTT 57.528 34.615 0.00 0.00 41.63 3.50
332 396 9.575868 AGAGATCTGAATCGTAATTCTAGGTTA 57.424 33.333 0.00 0.00 41.63 2.85
333 397 9.834628 GAGATCTGAATCGTAATTCTAGGTTAG 57.165 37.037 0.00 0.00 41.63 2.34
337 401 8.794553 TCTGAATCGTAATTCTAGGTTAGATCC 58.205 37.037 0.00 0.00 41.63 3.36
343 407 8.080417 TCGTAATTCTAGGTTAGATCCAAATCG 58.920 37.037 0.00 0.00 36.97 3.34
344 408 8.080417 CGTAATTCTAGGTTAGATCCAAATCGA 58.920 37.037 0.00 0.00 36.97 3.59
345 409 9.930693 GTAATTCTAGGTTAGATCCAAATCGAT 57.069 33.333 0.00 0.00 36.97 3.59
355 742 6.566197 AGATCCAAATCGATAAAATCAGGC 57.434 37.500 0.00 0.00 36.97 4.85
520 907 9.965824 TTCAATGTTAGATCTTGAAAAAGTTCC 57.034 29.630 0.00 0.00 36.30 3.62
524 911 8.324163 TGTTAGATCTTGAAAAAGTTCCTAGC 57.676 34.615 0.00 0.00 32.28 3.42
525 912 7.936847 TGTTAGATCTTGAAAAAGTTCCTAGCA 59.063 33.333 0.00 0.00 32.28 3.49
527 914 7.823745 AGATCTTGAAAAAGTTCCTAGCAAA 57.176 32.000 0.00 0.00 32.28 3.68
528 915 8.237811 AGATCTTGAAAAAGTTCCTAGCAAAA 57.762 30.769 0.00 0.00 32.28 2.44
529 916 8.355913 AGATCTTGAAAAAGTTCCTAGCAAAAG 58.644 33.333 0.00 0.00 32.28 2.27
530 917 7.404671 TCTTGAAAAAGTTCCTAGCAAAAGT 57.595 32.000 0.00 0.00 32.28 2.66
531 918 7.480810 TCTTGAAAAAGTTCCTAGCAAAAGTC 58.519 34.615 0.00 0.00 32.28 3.01
532 919 6.144078 TGAAAAAGTTCCTAGCAAAAGTCC 57.856 37.500 0.00 0.00 32.28 3.85
533 920 5.891551 TGAAAAAGTTCCTAGCAAAAGTCCT 59.108 36.000 0.00 0.00 32.28 3.85
534 921 6.379988 TGAAAAAGTTCCTAGCAAAAGTCCTT 59.620 34.615 0.00 0.00 32.28 3.36
535 922 6.791867 AAAAGTTCCTAGCAAAAGTCCTTT 57.208 33.333 0.00 0.00 0.00 3.11
536 923 5.774498 AAGTTCCTAGCAAAAGTCCTTTG 57.226 39.130 0.00 0.00 46.20 2.77
537 924 4.145052 AGTTCCTAGCAAAAGTCCTTTGG 58.855 43.478 0.00 0.00 44.03 3.28
544 931 3.457234 GCAAAAGTCCTTTGGTTTCAGG 58.543 45.455 0.00 0.00 44.03 3.86
545 932 3.741075 GCAAAAGTCCTTTGGTTTCAGGG 60.741 47.826 0.00 0.00 44.03 4.45
546 933 3.680777 AAAGTCCTTTGGTTTCAGGGA 57.319 42.857 0.00 0.00 0.00 4.20
547 934 2.658807 AGTCCTTTGGTTTCAGGGAC 57.341 50.000 0.00 0.00 42.44 4.46
548 935 2.136026 AGTCCTTTGGTTTCAGGGACT 58.864 47.619 7.07 7.07 44.77 3.85
549 936 2.514160 AGTCCTTTGGTTTCAGGGACTT 59.486 45.455 7.07 0.00 45.98 3.01
550 937 3.052869 AGTCCTTTGGTTTCAGGGACTTT 60.053 43.478 7.07 0.00 45.98 2.66
551 938 3.704566 GTCCTTTGGTTTCAGGGACTTTT 59.295 43.478 0.00 0.00 40.76 2.27
552 939 4.161565 GTCCTTTGGTTTCAGGGACTTTTT 59.838 41.667 0.00 0.00 40.76 1.94
573 960 6.844097 TTTTGTGTTGGGACTAGAAAAAGT 57.156 33.333 0.00 0.00 0.00 2.66
574 961 6.844097 TTTGTGTTGGGACTAGAAAAAGTT 57.156 33.333 0.00 0.00 0.00 2.66
575 962 6.445357 TTGTGTTGGGACTAGAAAAAGTTC 57.555 37.500 0.00 0.00 0.00 3.01
576 963 5.502079 TGTGTTGGGACTAGAAAAAGTTCA 58.498 37.500 0.00 0.00 36.09 3.18
577 964 6.126409 TGTGTTGGGACTAGAAAAAGTTCAT 58.874 36.000 0.00 0.00 36.09 2.57
578 965 7.284074 TGTGTTGGGACTAGAAAAAGTTCATA 58.716 34.615 0.00 0.00 36.09 2.15
579 966 7.444183 TGTGTTGGGACTAGAAAAAGTTCATAG 59.556 37.037 0.00 0.00 36.09 2.23
580 967 6.430000 TGTTGGGACTAGAAAAAGTTCATAGC 59.570 38.462 0.00 0.00 36.09 2.97
581 968 6.121776 TGGGACTAGAAAAAGTTCATAGCA 57.878 37.500 0.00 0.00 36.09 3.49
582 969 6.539173 TGGGACTAGAAAAAGTTCATAGCAA 58.461 36.000 0.00 0.00 36.09 3.91
589 976 7.770801 AGAAAAAGTTCATAGCAAACCAAAC 57.229 32.000 0.00 0.00 36.09 2.93
591 978 7.492344 AGAAAAAGTTCATAGCAAACCAAACAG 59.508 33.333 0.00 0.00 36.09 3.16
593 980 4.469657 AGTTCATAGCAAACCAAACAGGA 58.530 39.130 0.00 0.00 41.22 3.86
594 981 5.079643 AGTTCATAGCAAACCAAACAGGAT 58.920 37.500 0.00 0.00 41.22 3.24
596 983 4.661222 TCATAGCAAACCAAACAGGATGA 58.339 39.130 0.00 0.00 39.69 2.92
597 984 4.701651 TCATAGCAAACCAAACAGGATGAG 59.298 41.667 0.00 0.00 39.69 2.90
598 985 3.228188 AGCAAACCAAACAGGATGAGA 57.772 42.857 0.00 0.00 39.69 3.27
601 988 3.319122 GCAAACCAAACAGGATGAGACTT 59.681 43.478 0.00 0.00 39.69 3.01
634 1021 7.859613 CTTTTTGCTAAAAGTCCTTAGAAGC 57.140 36.000 20.79 0.00 43.34 3.86
635 1022 6.952773 TTTTGCTAAAAGTCCTTAGAAGCA 57.047 33.333 6.73 6.73 31.59 3.91
637 1024 4.324267 TGCTAAAAGTCCTTAGAAGCACC 58.676 43.478 6.73 0.00 31.59 5.01
639 1026 4.632251 GCTAAAAGTCCTTAGAAGCACCTC 59.368 45.833 0.00 0.00 31.59 3.85
640 1027 4.984146 AAAAGTCCTTAGAAGCACCTCT 57.016 40.909 0.00 0.00 0.00 3.69
641 1028 4.984146 AAAGTCCTTAGAAGCACCTCTT 57.016 40.909 0.00 0.00 37.83 2.85
642 1029 4.984146 AAGTCCTTAGAAGCACCTCTTT 57.016 40.909 0.00 0.00 34.56 2.52
643 1030 4.278975 AGTCCTTAGAAGCACCTCTTTG 57.721 45.455 0.00 0.00 34.56 2.77
644 1031 3.904339 AGTCCTTAGAAGCACCTCTTTGA 59.096 43.478 0.00 0.00 34.56 2.69
645 1032 4.020662 AGTCCTTAGAAGCACCTCTTTGAG 60.021 45.833 0.00 0.00 34.56 3.02
646 1033 4.021016 GTCCTTAGAAGCACCTCTTTGAGA 60.021 45.833 0.00 0.00 34.56 3.27
647 1034 4.221703 TCCTTAGAAGCACCTCTTTGAGAG 59.778 45.833 0.00 0.00 41.96 3.20
648 1035 4.020662 CCTTAGAAGCACCTCTTTGAGAGT 60.021 45.833 4.43 0.00 40.72 3.24
649 1036 3.676291 AGAAGCACCTCTTTGAGAGTC 57.324 47.619 4.43 0.00 40.72 3.36
652 1039 4.102367 AGAAGCACCTCTTTGAGAGTCTTT 59.898 41.667 0.00 0.00 40.72 2.52
653 1040 4.429854 AGCACCTCTTTGAGAGTCTTTT 57.570 40.909 0.00 0.00 40.72 2.27
702 1089 5.327616 GTCCTAGGACTAGAGAACCAAAC 57.672 47.826 31.12 3.26 41.57 2.93
703 1090 4.771054 GTCCTAGGACTAGAGAACCAAACA 59.229 45.833 31.12 0.00 41.57 2.83
705 1092 4.081586 CCTAGGACTAGAGAACCAAACACC 60.082 50.000 1.05 0.00 35.21 4.16
706 1093 3.314693 AGGACTAGAGAACCAAACACCA 58.685 45.455 0.00 0.00 0.00 4.17
707 1094 3.071167 AGGACTAGAGAACCAAACACCAC 59.929 47.826 0.00 0.00 0.00 4.16
708 1095 3.400255 GACTAGAGAACCAAACACCACC 58.600 50.000 0.00 0.00 0.00 4.61
790 1515 6.900189 TCTCCGATTAGATCTCAACGATTAC 58.100 40.000 8.02 0.00 30.84 1.89
1312 2045 7.442364 TCTTCATCATGATCCGGAAGTTTAATC 59.558 37.037 23.37 0.00 37.02 1.75
1373 2106 0.030638 ATTGTGTTGCACTGTTCGGC 59.969 50.000 0.00 0.00 35.11 5.54
1375 2108 0.179070 TGTGTTGCACTGTTCGGCTA 60.179 50.000 0.00 0.00 35.11 3.93
1614 2547 0.608640 AGGACGTTTTGCTCGGATCT 59.391 50.000 0.00 0.00 0.00 2.75
1743 2676 1.983224 CTCCACCGGTGACATCCTT 59.017 57.895 36.07 0.00 0.00 3.36
1752 2685 2.489971 GGTGACATCCTTTTCGACACA 58.510 47.619 0.00 0.00 0.00 3.72
2023 2963 2.037251 GGCAAGGAGTGAGTACAAGTGA 59.963 50.000 0.00 0.00 0.00 3.41
2025 2965 3.321497 CAAGGAGTGAGTACAAGTGAGC 58.679 50.000 0.00 0.00 0.00 4.26
2026 2966 2.598565 AGGAGTGAGTACAAGTGAGCA 58.401 47.619 0.00 0.00 0.00 4.26
2589 7249 2.427095 CAGACATCGACTACATGGACCA 59.573 50.000 0.00 0.00 0.00 4.02
3038 7710 0.389296 CAATGGCGTGTCCGAGTACA 60.389 55.000 0.00 0.00 37.80 2.90
3525 8197 0.382515 CTCTTCTTCTCCTACCCGCG 59.617 60.000 0.00 0.00 0.00 6.46
3829 8501 2.281761 CACCTCCTTGTGGCGCTT 60.282 61.111 7.64 0.00 32.50 4.68
4122 8794 2.048503 CACCAAGTCCCGGACGAC 60.049 66.667 12.04 2.06 37.67 4.34
4168 8840 1.250154 CGCTGGCCATTGGAAAGGAA 61.250 55.000 5.51 0.00 0.00 3.36
4210 8885 6.545666 TCATGTCCCATTAACATTGATACCAC 59.454 38.462 0.00 0.00 35.19 4.16
4215 8890 8.962679 GTCCCATTAACATTGATACCACTTTTA 58.037 33.333 0.00 0.00 0.00 1.52
4339 9017 4.960469 TGGTCGTTTATCTACCATCTTCCT 59.040 41.667 0.00 0.00 37.05 3.36
4416 9098 9.383519 GTTAATCACAAGTTCCATCTTGATCTA 57.616 33.333 12.38 0.00 45.11 1.98
4426 9108 7.613022 AGTTCCATCTTGATCTAAAATTGCTCA 59.387 33.333 0.00 0.00 0.00 4.26
4435 9117 7.765307 TGATCTAAAATTGCTCATTCACCTTC 58.235 34.615 0.00 0.00 0.00 3.46
4461 9143 2.733956 TGGAGGGCAATTGTATGTTCC 58.266 47.619 7.40 8.17 0.00 3.62
4472 9154 9.169592 GGCAATTGTATGTTCCTTTACTTACTA 57.830 33.333 7.40 0.00 32.70 1.82
4530 9256 3.691118 ACATCTTTGAACGTGCATAGCAT 59.309 39.130 9.00 2.04 41.91 3.79
4531 9257 4.156556 ACATCTTTGAACGTGCATAGCATT 59.843 37.500 9.00 0.00 41.91 3.56
4550 9276 2.566833 TCATGAAGGCCCAATATCCG 57.433 50.000 0.00 0.00 0.00 4.18
4555 9281 0.179056 AAGGCCCAATATCCGTCGTG 60.179 55.000 0.00 0.00 0.00 4.35
4559 9285 1.063469 GCCCAATATCCGTCGTGTTTG 59.937 52.381 0.00 0.00 0.00 2.93
4567 9293 2.472816 TCCGTCGTGTTTGTAAGGTTC 58.527 47.619 0.00 0.00 0.00 3.62
4586 9312 5.703130 AGGTTCACAAATCTGCTAAGACTTC 59.297 40.000 0.00 0.00 34.48 3.01
4587 9313 5.703130 GGTTCACAAATCTGCTAAGACTTCT 59.297 40.000 0.00 0.00 34.48 2.85
4588 9314 6.205658 GGTTCACAAATCTGCTAAGACTTCTT 59.794 38.462 0.00 0.00 39.85 2.52
4589 9315 7.255277 GGTTCACAAATCTGCTAAGACTTCTTT 60.255 37.037 0.00 0.00 37.40 2.52
4619 9345 2.204237 GCAAAACTGCCAAGACCTTTG 58.796 47.619 0.00 0.00 0.00 2.77
4622 9348 4.252878 CAAAACTGCCAAGACCTTTGTTT 58.747 39.130 0.00 0.00 0.00 2.83
4623 9349 4.551702 AAACTGCCAAGACCTTTGTTTT 57.448 36.364 0.00 0.00 0.00 2.43
4624 9350 4.551702 AACTGCCAAGACCTTTGTTTTT 57.448 36.364 0.00 0.00 0.00 1.94
4647 9373 2.358898 TCTGTTTCCAAAGAGCAAGCAC 59.641 45.455 0.00 0.00 0.00 4.40
4648 9374 2.098614 TGTTTCCAAAGAGCAAGCACA 58.901 42.857 0.00 0.00 0.00 4.57
4649 9375 2.495270 TGTTTCCAAAGAGCAAGCACAA 59.505 40.909 0.00 0.00 0.00 3.33
4650 9376 3.132646 TGTTTCCAAAGAGCAAGCACAAT 59.867 39.130 0.00 0.00 0.00 2.71
4651 9377 4.340666 TGTTTCCAAAGAGCAAGCACAATA 59.659 37.500 0.00 0.00 0.00 1.90
4652 9378 4.503741 TTCCAAAGAGCAAGCACAATAC 57.496 40.909 0.00 0.00 0.00 1.89
4653 9379 2.483877 TCCAAAGAGCAAGCACAATACG 59.516 45.455 0.00 0.00 0.00 3.06
4654 9380 2.483877 CCAAAGAGCAAGCACAATACGA 59.516 45.455 0.00 0.00 0.00 3.43
4655 9381 3.127548 CCAAAGAGCAAGCACAATACGAT 59.872 43.478 0.00 0.00 0.00 3.73
4656 9382 4.093514 CAAAGAGCAAGCACAATACGATG 58.906 43.478 0.00 0.00 0.00 3.84
4657 9383 3.251479 AGAGCAAGCACAATACGATGA 57.749 42.857 0.00 0.00 0.00 2.92
4660 9386 3.273434 AGCAAGCACAATACGATGACAT 58.727 40.909 0.00 0.00 0.00 3.06
4661 9387 4.441792 AGCAAGCACAATACGATGACATA 58.558 39.130 0.00 0.00 0.00 2.29
4662 9388 4.875536 AGCAAGCACAATACGATGACATAA 59.124 37.500 0.00 0.00 0.00 1.90
4663 9389 5.007039 AGCAAGCACAATACGATGACATAAG 59.993 40.000 0.00 0.00 0.00 1.73
4664 9390 5.200454 CAAGCACAATACGATGACATAAGC 58.800 41.667 0.00 0.00 0.00 3.09
4665 9391 4.441792 AGCACAATACGATGACATAAGCA 58.558 39.130 0.00 0.00 0.00 3.91
4666 9392 4.509230 AGCACAATACGATGACATAAGCAG 59.491 41.667 0.00 0.00 0.00 4.24
4668 9394 3.809832 ACAATACGATGACATAAGCAGGC 59.190 43.478 0.00 0.00 0.00 4.85
4670 9396 2.698855 ACGATGACATAAGCAGGCTT 57.301 45.000 11.70 11.70 39.83 4.35
4672 9398 4.137116 ACGATGACATAAGCAGGCTTAA 57.863 40.909 16.79 2.10 41.21 1.85
4673 9399 4.122776 ACGATGACATAAGCAGGCTTAAG 58.877 43.478 16.79 14.80 41.21 1.85
4674 9400 3.496130 CGATGACATAAGCAGGCTTAAGG 59.504 47.826 16.79 14.02 41.21 2.69
4675 9401 4.708177 GATGACATAAGCAGGCTTAAGGA 58.292 43.478 16.79 5.51 41.21 3.36
4676 9402 4.778213 TGACATAAGCAGGCTTAAGGAT 57.222 40.909 16.79 0.00 41.21 3.24
4678 9404 6.247229 TGACATAAGCAGGCTTAAGGATTA 57.753 37.500 16.79 0.00 41.21 1.75
4681 9407 7.067008 TGACATAAGCAGGCTTAAGGATTAAAC 59.933 37.037 16.79 3.89 40.54 2.01
4682 9408 7.119387 ACATAAGCAGGCTTAAGGATTAAACT 58.881 34.615 16.79 0.00 40.54 2.66
4683 9409 8.272173 ACATAAGCAGGCTTAAGGATTAAACTA 58.728 33.333 16.79 0.00 40.54 2.24
4684 9410 9.289782 CATAAGCAGGCTTAAGGATTAAACTAT 57.710 33.333 16.79 0.00 40.54 2.12
4685 9411 9.868160 ATAAGCAGGCTTAAGGATTAAACTATT 57.132 29.630 16.79 0.00 40.54 1.73
4708 9434 5.952347 ATACTTGTACTTAGTTGGAGGGG 57.048 43.478 6.54 0.00 0.00 4.79
4710 9436 4.237018 ACTTGTACTTAGTTGGAGGGGAA 58.763 43.478 0.00 0.00 0.00 3.97
4712 9438 2.564062 TGTACTTAGTTGGAGGGGAACG 59.436 50.000 0.00 0.00 0.00 3.95
4713 9439 2.019807 ACTTAGTTGGAGGGGAACGA 57.980 50.000 0.00 0.00 0.00 3.85
4714 9440 2.332117 ACTTAGTTGGAGGGGAACGAA 58.668 47.619 0.00 0.00 0.00 3.85
4717 9443 0.977395 AGTTGGAGGGGAACGAAGAG 59.023 55.000 0.00 0.00 0.00 2.85
4718 9444 0.036294 GTTGGAGGGGAACGAAGAGG 60.036 60.000 0.00 0.00 0.00 3.69
4719 9445 0.178915 TTGGAGGGGAACGAAGAGGA 60.179 55.000 0.00 0.00 0.00 3.71
4720 9446 0.614979 TGGAGGGGAACGAAGAGGAG 60.615 60.000 0.00 0.00 0.00 3.69
4721 9447 0.324460 GGAGGGGAACGAAGAGGAGA 60.324 60.000 0.00 0.00 0.00 3.71
4725 9451 1.341187 GGGGAACGAAGAGGAGAGAGA 60.341 57.143 0.00 0.00 0.00 3.10
4726 9452 2.448453 GGGAACGAAGAGGAGAGAGAA 58.552 52.381 0.00 0.00 0.00 2.87
4729 9455 4.262506 GGGAACGAAGAGGAGAGAGAAAAA 60.263 45.833 0.00 0.00 0.00 1.94
4750 9476 5.622770 AAAAGCGGGTTGTACAATAAGAG 57.377 39.130 12.26 3.68 0.00 2.85
4751 9477 2.629051 AGCGGGTTGTACAATAAGAGC 58.371 47.619 12.26 12.76 0.00 4.09
4753 9479 1.931172 CGGGTTGTACAATAAGAGCCG 59.069 52.381 17.70 17.70 43.58 5.52
4755 9481 2.355412 GGGTTGTACAATAAGAGCCGGT 60.355 50.000 12.26 0.00 0.00 5.28
4756 9482 3.340928 GGTTGTACAATAAGAGCCGGTT 58.659 45.455 12.26 0.00 0.00 4.44
4757 9483 4.506758 GGTTGTACAATAAGAGCCGGTTA 58.493 43.478 12.26 0.00 0.00 2.85
4758 9484 5.121105 GGTTGTACAATAAGAGCCGGTTAT 58.879 41.667 12.26 0.00 0.00 1.89
4759 9485 6.282930 GGTTGTACAATAAGAGCCGGTTATA 58.717 40.000 12.26 0.00 0.00 0.98
4760 9486 6.423001 GGTTGTACAATAAGAGCCGGTTATAG 59.577 42.308 12.26 0.00 0.00 1.31
4762 9488 4.682778 ACAATAAGAGCCGGTTATAGCA 57.317 40.909 1.90 0.00 0.00 3.49
4763 9489 4.377897 ACAATAAGAGCCGGTTATAGCAC 58.622 43.478 1.90 0.00 0.00 4.40
4764 9490 2.787601 TAAGAGCCGGTTATAGCACG 57.212 50.000 1.90 0.00 0.00 5.34
4766 9492 1.108776 AGAGCCGGTTATAGCACGAA 58.891 50.000 1.90 0.00 0.00 3.85
4767 9493 1.479323 AGAGCCGGTTATAGCACGAAA 59.521 47.619 1.90 0.00 0.00 3.46
4768 9494 1.591619 GAGCCGGTTATAGCACGAAAC 59.408 52.381 1.90 0.00 0.00 2.78
4769 9495 0.654160 GCCGGTTATAGCACGAAACC 59.346 55.000 1.90 0.00 39.44 3.27
4770 9496 1.292992 CCGGTTATAGCACGAAACCC 58.707 55.000 0.00 0.00 39.63 4.11
4771 9497 1.405797 CCGGTTATAGCACGAAACCCA 60.406 52.381 0.00 0.00 39.63 4.51
4772 9498 2.348660 CGGTTATAGCACGAAACCCAA 58.651 47.619 0.00 0.00 39.63 4.12
4773 9499 2.094734 CGGTTATAGCACGAAACCCAAC 59.905 50.000 0.00 0.00 39.63 3.77
4774 9500 3.075884 GGTTATAGCACGAAACCCAACA 58.924 45.455 0.00 0.00 37.31 3.33
4775 9501 3.120095 GGTTATAGCACGAAACCCAACAC 60.120 47.826 0.00 0.00 37.31 3.32
4777 9503 2.264005 TAGCACGAAACCCAACACAT 57.736 45.000 0.00 0.00 0.00 3.21
4778 9504 1.398692 AGCACGAAACCCAACACATT 58.601 45.000 0.00 0.00 0.00 2.71
4779 9505 1.754226 AGCACGAAACCCAACACATTT 59.246 42.857 0.00 0.00 0.00 2.32
4780 9506 2.952978 AGCACGAAACCCAACACATTTA 59.047 40.909 0.00 0.00 0.00 1.40
4781 9507 3.572255 AGCACGAAACCCAACACATTTAT 59.428 39.130 0.00 0.00 0.00 1.40
4782 9508 3.672867 GCACGAAACCCAACACATTTATG 59.327 43.478 0.00 0.00 0.00 1.90
4783 9509 4.557695 GCACGAAACCCAACACATTTATGA 60.558 41.667 0.00 0.00 0.00 2.15
4784 9510 5.153513 CACGAAACCCAACACATTTATGAG 58.846 41.667 0.00 0.00 0.00 2.90
4785 9511 5.049060 CACGAAACCCAACACATTTATGAGA 60.049 40.000 0.00 0.00 0.00 3.27
4786 9512 5.710099 ACGAAACCCAACACATTTATGAGAT 59.290 36.000 0.00 0.00 0.00 2.75
4787 9513 6.208599 ACGAAACCCAACACATTTATGAGATT 59.791 34.615 0.00 0.00 0.00 2.40
4788 9514 6.527722 CGAAACCCAACACATTTATGAGATTG 59.472 38.462 0.00 0.00 0.00 2.67
4789 9515 6.916360 AACCCAACACATTTATGAGATTGT 57.084 33.333 0.00 0.00 0.00 2.71
4790 9516 8.415950 AAACCCAACACATTTATGAGATTGTA 57.584 30.769 0.00 0.00 0.00 2.41
4791 9517 8.415950 AACCCAACACATTTATGAGATTGTAA 57.584 30.769 0.00 0.00 0.00 2.41
4792 9518 8.055279 ACCCAACACATTTATGAGATTGTAAG 57.945 34.615 0.00 0.00 0.00 2.34
4793 9519 7.888021 ACCCAACACATTTATGAGATTGTAAGA 59.112 33.333 0.00 0.00 0.00 2.10
4794 9520 8.906867 CCCAACACATTTATGAGATTGTAAGAT 58.093 33.333 0.00 0.00 0.00 2.40
4795 9521 9.726232 CCAACACATTTATGAGATTGTAAGATG 57.274 33.333 0.00 0.00 0.00 2.90
4796 9522 9.726232 CAACACATTTATGAGATTGTAAGATGG 57.274 33.333 0.00 0.00 0.00 3.51
4797 9523 8.455903 ACACATTTATGAGATTGTAAGATGGG 57.544 34.615 0.00 0.00 0.00 4.00
4798 9524 7.013655 ACACATTTATGAGATTGTAAGATGGGC 59.986 37.037 0.00 0.00 0.00 5.36
4799 9525 6.491403 ACATTTATGAGATTGTAAGATGGGCC 59.509 38.462 0.00 0.00 0.00 5.80
4800 9526 5.645056 TTATGAGATTGTAAGATGGGCCA 57.355 39.130 9.61 9.61 0.00 5.36
4801 9527 4.524802 ATGAGATTGTAAGATGGGCCAA 57.475 40.909 11.89 0.00 0.00 4.52
4804 9530 4.473196 TGAGATTGTAAGATGGGCCAACTA 59.527 41.667 17.39 4.67 0.00 2.24
4805 9531 5.132648 TGAGATTGTAAGATGGGCCAACTAT 59.867 40.000 17.39 9.61 0.00 2.12
4806 9532 6.018433 AGATTGTAAGATGGGCCAACTATT 57.982 37.500 17.39 4.40 0.00 1.73
4807 9533 7.147391 TGAGATTGTAAGATGGGCCAACTATTA 60.147 37.037 17.39 3.32 0.00 0.98
4808 9534 7.582719 AGATTGTAAGATGGGCCAACTATTAA 58.417 34.615 17.39 11.93 0.00 1.40
4809 9535 8.227507 AGATTGTAAGATGGGCCAACTATTAAT 58.772 33.333 17.39 15.71 0.00 1.40
4810 9536 9.515226 GATTGTAAGATGGGCCAACTATTAATA 57.485 33.333 17.39 2.38 0.00 0.98
4811 9537 9.875708 ATTGTAAGATGGGCCAACTATTAATAA 57.124 29.630 17.39 8.07 0.00 1.40
4812 9538 9.702253 TTGTAAGATGGGCCAACTATTAATAAA 57.298 29.630 17.39 0.00 0.00 1.40
4813 9539 9.702253 TGTAAGATGGGCCAACTATTAATAAAA 57.298 29.630 17.39 0.00 0.00 1.52
4863 9589 9.656040 TTGTACGTTATGTTTATAAGTCATGGT 57.344 29.630 0.00 10.45 29.71 3.55
4864 9590 9.656040 TGTACGTTATGTTTATAAGTCATGGTT 57.344 29.630 0.00 0.00 29.71 3.67
4865 9591 9.910511 GTACGTTATGTTTATAAGTCATGGTTG 57.089 33.333 0.00 5.65 29.71 3.77
4866 9592 7.469260 ACGTTATGTTTATAAGTCATGGTTGC 58.531 34.615 12.45 0.00 29.71 4.17
4869 9595 5.309323 TGTTTATAAGTCATGGTTGCAGC 57.691 39.130 0.00 0.00 0.00 5.25
4870 9596 5.009631 TGTTTATAAGTCATGGTTGCAGCT 58.990 37.500 0.00 0.00 0.00 4.24
4871 9597 5.106197 TGTTTATAAGTCATGGTTGCAGCTG 60.106 40.000 10.11 10.11 0.00 4.24
4873 9599 2.211250 AAGTCATGGTTGCAGCTGAT 57.789 45.000 20.43 0.00 0.00 2.90
4877 9603 0.454600 CATGGTTGCAGCTGATGACC 59.545 55.000 20.43 20.41 0.00 4.02
4878 9604 1.028330 ATGGTTGCAGCTGATGACCG 61.028 55.000 20.43 0.00 33.07 4.79
4879 9605 1.672356 GGTTGCAGCTGATGACCGT 60.672 57.895 20.43 0.00 0.00 4.83
4880 9606 1.499056 GTTGCAGCTGATGACCGTG 59.501 57.895 20.43 0.00 0.00 4.94
4881 9607 0.950555 GTTGCAGCTGATGACCGTGA 60.951 55.000 20.43 0.00 0.00 4.35
4884 9610 1.639298 GCAGCTGATGACCGTGAACC 61.639 60.000 20.43 0.00 0.00 3.62
4885 9611 0.036952 CAGCTGATGACCGTGAACCT 60.037 55.000 8.42 0.00 0.00 3.50
4886 9612 0.036952 AGCTGATGACCGTGAACCTG 60.037 55.000 0.00 0.00 0.00 4.00
4887 9613 0.320771 GCTGATGACCGTGAACCTGT 60.321 55.000 0.00 0.00 0.00 4.00
4888 9614 1.878102 GCTGATGACCGTGAACCTGTT 60.878 52.381 0.00 0.00 0.00 3.16
4889 9615 2.611971 GCTGATGACCGTGAACCTGTTA 60.612 50.000 0.00 0.00 0.00 2.41
4890 9616 3.861840 CTGATGACCGTGAACCTGTTAT 58.138 45.455 0.00 0.00 0.00 1.89
4891 9617 4.679639 GCTGATGACCGTGAACCTGTTATA 60.680 45.833 0.00 0.00 0.00 0.98
4892 9618 5.408880 TGATGACCGTGAACCTGTTATAA 57.591 39.130 0.00 0.00 0.00 0.98
4893 9619 5.795972 TGATGACCGTGAACCTGTTATAAA 58.204 37.500 0.00 0.00 0.00 1.40
4894 9620 6.411376 TGATGACCGTGAACCTGTTATAAAT 58.589 36.000 0.00 0.00 0.00 1.40
4895 9621 6.537301 TGATGACCGTGAACCTGTTATAAATC 59.463 38.462 0.00 0.00 0.00 2.17
4896 9622 5.795972 TGACCGTGAACCTGTTATAAATCA 58.204 37.500 0.00 0.00 0.00 2.57
4899 9625 6.106673 ACCGTGAACCTGTTATAAATCAGAG 58.893 40.000 4.98 0.00 34.02 3.35
4900 9626 6.070995 ACCGTGAACCTGTTATAAATCAGAGA 60.071 38.462 4.98 0.00 34.02 3.10
4901 9627 6.477033 CCGTGAACCTGTTATAAATCAGAGAG 59.523 42.308 4.98 0.00 34.02 3.20
4905 9828 4.202264 ACCTGTTATAAATCAGAGAGGCGG 60.202 45.833 4.98 0.00 34.02 6.13
4908 9831 6.085555 TGTTATAAATCAGAGAGGCGGTAG 57.914 41.667 0.00 0.00 0.00 3.18
4922 9845 1.469423 GCGGTAGGGAGAAGAAACTCG 60.469 57.143 0.00 0.00 37.74 4.18
4925 9848 3.305881 CGGTAGGGAGAAGAAACTCGTTT 60.306 47.826 0.00 0.00 37.74 3.60
4935 9858 1.947456 GAAACTCGTTTGTTGAGCCCT 59.053 47.619 0.00 0.00 36.94 5.19
4936 9859 2.922740 AACTCGTTTGTTGAGCCCTA 57.077 45.000 0.00 0.00 36.94 3.53
4954 9877 4.806286 GCCCTATGTATCGGCCAAAATACT 60.806 45.833 16.58 8.32 36.63 2.12
4961 9884 2.722094 TCGGCCAAAATACTTGATGCT 58.278 42.857 2.24 0.00 0.00 3.79
4964 9887 2.223572 GGCCAAAATACTTGATGCTCCG 60.224 50.000 0.00 0.00 0.00 4.63
4978 9901 2.446994 TCCGGGTGGAGGTGTTGT 60.447 61.111 0.00 0.00 40.17 3.32
5010 9933 2.743664 CACGATGAAATTGAGCACCTGA 59.256 45.455 0.00 0.00 0.00 3.86
5039 9962 2.662006 TGCTTCAAGGAGATGTCGAG 57.338 50.000 0.00 0.00 0.00 4.04
5050 9973 1.895798 AGATGTCGAGCACCTCAAAGA 59.104 47.619 0.00 0.00 0.00 2.52
5061 9984 3.808618 GCACCTCAAAGACACTCCTGAAT 60.809 47.826 0.00 0.00 0.00 2.57
5063 9986 3.392616 ACCTCAAAGACACTCCTGAATGT 59.607 43.478 0.00 0.00 0.00 2.71
5079 10002 5.101648 TGAATGTCTTCTGTATGCCATCA 57.898 39.130 0.00 0.00 32.29 3.07
5085 10008 3.455543 TCTTCTGTATGCCATCATGGACA 59.544 43.478 8.30 5.48 40.96 4.02
5104 10027 1.003116 CATCGCAGCTAATGTGGAAGC 60.003 52.381 0.00 0.00 40.01 3.86
5112 10035 2.767505 CTAATGTGGAAGCCGATACCC 58.232 52.381 0.00 0.00 0.00 3.69
5113 10036 0.916086 AATGTGGAAGCCGATACCCA 59.084 50.000 0.00 0.00 0.00 4.51
5114 10037 0.916086 ATGTGGAAGCCGATACCCAA 59.084 50.000 0.00 0.00 0.00 4.12
5115 10038 0.916086 TGTGGAAGCCGATACCCAAT 59.084 50.000 0.00 0.00 0.00 3.16
5116 10039 1.308998 GTGGAAGCCGATACCCAATG 58.691 55.000 0.00 0.00 0.00 2.82
5117 10040 0.182537 TGGAAGCCGATACCCAATGG 59.817 55.000 0.00 0.00 37.80 3.16
5124 10047 1.691196 CGATACCCAATGGCCAATGT 58.309 50.000 19.43 11.80 33.59 2.71
5138 10061 2.223641 GCCAATGTGTACGGTATCTCGA 60.224 50.000 0.00 0.00 0.00 4.04
5139 10062 3.552273 GCCAATGTGTACGGTATCTCGAT 60.552 47.826 0.00 0.00 0.00 3.59
5140 10063 3.981416 CCAATGTGTACGGTATCTCGATG 59.019 47.826 0.00 0.00 0.00 3.84
5148 10071 1.599667 CGGTATCTCGATGTTCCCACG 60.600 57.143 0.00 0.00 0.00 4.94
5157 10080 2.281484 GTTCCCACGCTGCCTTCA 60.281 61.111 0.00 0.00 0.00 3.02
5171 10094 1.714794 CCTTCAGCACGTGAACTAGG 58.285 55.000 22.23 15.43 40.45 3.02
5173 10096 2.288825 CCTTCAGCACGTGAACTAGGAA 60.289 50.000 22.23 11.07 40.45 3.36
5175 10098 1.684450 TCAGCACGTGAACTAGGAACA 59.316 47.619 22.23 0.00 29.64 3.18
5183 10106 3.553096 CGTGAACTAGGAACAGCACTTCT 60.553 47.826 0.00 0.00 0.00 2.85
5195 10118 0.524862 GCACTTCTGGGAGCACATTG 59.475 55.000 0.00 0.00 0.00 2.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 2.981859 TTTTTAAACCGCCTTGCCAA 57.018 40.000 0.00 0.00 0.00 4.52
58 62 5.593909 TCAGCCGGATGATAATCATGTTTTT 59.406 36.000 20.59 0.00 37.20 1.94
85 89 4.982916 CCATAACAGTTCGATAGCACTACC 59.017 45.833 0.00 0.00 41.83 3.18
98 102 6.904626 AGCTAGAAATCCATCCATAACAGTT 58.095 36.000 0.00 0.00 0.00 3.16
177 188 1.002659 CATCCCACGTGACCTAAACCA 59.997 52.381 19.30 0.00 0.00 3.67
327 391 9.277783 CTGATTTTATCGATTTGGATCTAACCT 57.722 33.333 1.71 0.00 0.00 3.50
328 392 8.507249 CCTGATTTTATCGATTTGGATCTAACC 58.493 37.037 1.71 0.00 0.00 2.85
329 393 8.017946 GCCTGATTTTATCGATTTGGATCTAAC 58.982 37.037 1.71 0.00 0.00 2.34
330 394 7.174946 GGCCTGATTTTATCGATTTGGATCTAA 59.825 37.037 1.71 0.00 0.00 2.10
331 395 6.655003 GGCCTGATTTTATCGATTTGGATCTA 59.345 38.462 1.71 0.00 0.00 1.98
332 396 5.474876 GGCCTGATTTTATCGATTTGGATCT 59.525 40.000 1.71 0.00 0.00 2.75
333 397 5.474876 AGGCCTGATTTTATCGATTTGGATC 59.525 40.000 3.11 3.72 0.00 3.36
336 400 4.580167 TCAGGCCTGATTTTATCGATTTGG 59.420 41.667 32.00 0.00 34.14 3.28
337 401 5.756195 TCAGGCCTGATTTTATCGATTTG 57.244 39.130 32.00 0.66 34.14 2.32
350 414 5.698741 TTCAATCTTCTAATCAGGCCTGA 57.301 39.130 36.73 36.73 44.59 3.86
510 897 6.392625 AGGACTTTTGCTAGGAACTTTTTC 57.607 37.500 0.00 0.00 41.75 2.29
512 899 6.406961 CCAAAGGACTTTTGCTAGGAACTTTT 60.407 38.462 4.57 0.00 43.90 2.27
513 900 5.069119 CCAAAGGACTTTTGCTAGGAACTTT 59.931 40.000 4.57 0.01 43.90 2.66
514 901 4.584743 CCAAAGGACTTTTGCTAGGAACTT 59.415 41.667 4.57 0.00 43.90 2.66
515 902 4.145052 CCAAAGGACTTTTGCTAGGAACT 58.855 43.478 4.57 0.00 43.90 3.01
516 903 3.889538 ACCAAAGGACTTTTGCTAGGAAC 59.110 43.478 4.57 0.00 43.90 3.62
517 904 4.178956 ACCAAAGGACTTTTGCTAGGAA 57.821 40.909 4.57 0.00 43.90 3.36
519 906 4.340950 TGAAACCAAAGGACTTTTGCTAGG 59.659 41.667 4.57 1.67 43.90 3.02
520 907 5.507985 CCTGAAACCAAAGGACTTTTGCTAG 60.508 44.000 4.57 0.00 43.90 3.42
522 909 3.132824 CCTGAAACCAAAGGACTTTTGCT 59.867 43.478 4.57 0.00 43.90 3.91
523 910 3.457234 CCTGAAACCAAAGGACTTTTGC 58.543 45.455 4.57 0.00 43.90 3.68
524 911 3.704061 TCCCTGAAACCAAAGGACTTTTG 59.296 43.478 3.14 3.14 44.67 2.44
525 912 3.704566 GTCCCTGAAACCAAAGGACTTTT 59.295 43.478 0.00 0.00 43.04 2.27
527 914 2.945456 GTCCCTGAAACCAAAGGACTT 58.055 47.619 0.00 0.00 43.04 3.01
528 915 2.658807 GTCCCTGAAACCAAAGGACT 57.341 50.000 0.00 0.00 43.04 3.85
529 916 2.658807 AGTCCCTGAAACCAAAGGAC 57.341 50.000 0.00 0.00 46.04 3.85
530 917 3.680777 AAAGTCCCTGAAACCAAAGGA 57.319 42.857 0.00 0.00 35.40 3.36
531 918 4.753516 AAAAAGTCCCTGAAACCAAAGG 57.246 40.909 0.00 0.00 0.00 3.11
549 936 7.234661 ACTTTTTCTAGTCCCAACACAAAAA 57.765 32.000 0.00 0.00 0.00 1.94
550 937 6.844097 ACTTTTTCTAGTCCCAACACAAAA 57.156 33.333 0.00 0.00 0.00 2.44
551 938 6.434652 TGAACTTTTTCTAGTCCCAACACAAA 59.565 34.615 0.00 0.00 32.36 2.83
552 939 5.946972 TGAACTTTTTCTAGTCCCAACACAA 59.053 36.000 0.00 0.00 32.36 3.33
553 940 5.502079 TGAACTTTTTCTAGTCCCAACACA 58.498 37.500 0.00 0.00 32.36 3.72
554 941 6.635030 ATGAACTTTTTCTAGTCCCAACAC 57.365 37.500 0.00 0.00 32.36 3.32
555 942 6.430000 GCTATGAACTTTTTCTAGTCCCAACA 59.570 38.462 0.00 0.00 32.36 3.33
556 943 6.430000 TGCTATGAACTTTTTCTAGTCCCAAC 59.570 38.462 0.00 0.00 32.36 3.77
557 944 6.539173 TGCTATGAACTTTTTCTAGTCCCAA 58.461 36.000 0.00 0.00 32.36 4.12
558 945 6.121776 TGCTATGAACTTTTTCTAGTCCCA 57.878 37.500 0.00 0.00 32.36 4.37
559 946 7.306213 GTTTGCTATGAACTTTTTCTAGTCCC 58.694 38.462 0.00 0.00 32.36 4.46
560 947 7.040686 TGGTTTGCTATGAACTTTTTCTAGTCC 60.041 37.037 0.00 0.00 32.36 3.85
561 948 7.871853 TGGTTTGCTATGAACTTTTTCTAGTC 58.128 34.615 0.00 0.00 32.36 2.59
562 949 7.817418 TGGTTTGCTATGAACTTTTTCTAGT 57.183 32.000 0.00 0.00 32.36 2.57
563 950 8.968242 GTTTGGTTTGCTATGAACTTTTTCTAG 58.032 33.333 0.00 0.00 32.36 2.43
564 951 8.470805 TGTTTGGTTTGCTATGAACTTTTTCTA 58.529 29.630 0.00 0.00 32.36 2.10
565 952 7.327214 TGTTTGGTTTGCTATGAACTTTTTCT 58.673 30.769 0.00 0.00 32.36 2.52
566 953 7.254421 CCTGTTTGGTTTGCTATGAACTTTTTC 60.254 37.037 0.00 0.00 0.00 2.29
567 954 6.538381 CCTGTTTGGTTTGCTATGAACTTTTT 59.462 34.615 0.00 0.00 0.00 1.94
568 955 6.048509 CCTGTTTGGTTTGCTATGAACTTTT 58.951 36.000 0.00 0.00 0.00 2.27
569 956 5.362430 TCCTGTTTGGTTTGCTATGAACTTT 59.638 36.000 0.00 0.00 37.07 2.66
570 957 4.892934 TCCTGTTTGGTTTGCTATGAACTT 59.107 37.500 0.00 0.00 37.07 2.66
571 958 4.469657 TCCTGTTTGGTTTGCTATGAACT 58.530 39.130 0.00 0.00 37.07 3.01
572 959 4.846779 TCCTGTTTGGTTTGCTATGAAC 57.153 40.909 0.00 0.00 37.07 3.18
573 960 5.076182 TCATCCTGTTTGGTTTGCTATGAA 58.924 37.500 0.00 0.00 37.07 2.57
574 961 4.661222 TCATCCTGTTTGGTTTGCTATGA 58.339 39.130 0.00 0.00 37.07 2.15
575 962 4.701651 TCTCATCCTGTTTGGTTTGCTATG 59.298 41.667 0.00 0.00 37.07 2.23
576 963 4.702131 GTCTCATCCTGTTTGGTTTGCTAT 59.298 41.667 0.00 0.00 37.07 2.97
577 964 4.072131 GTCTCATCCTGTTTGGTTTGCTA 58.928 43.478 0.00 0.00 37.07 3.49
578 965 2.887152 GTCTCATCCTGTTTGGTTTGCT 59.113 45.455 0.00 0.00 37.07 3.91
579 966 2.887152 AGTCTCATCCTGTTTGGTTTGC 59.113 45.455 0.00 0.00 37.07 3.68
580 967 5.520376 AAAGTCTCATCCTGTTTGGTTTG 57.480 39.130 0.00 0.00 37.07 2.93
581 968 6.544928 AAAAAGTCTCATCCTGTTTGGTTT 57.455 33.333 0.00 0.00 37.07 3.27
617 1004 6.043854 AGAGGTGCTTCTAAGGACTTTTAG 57.956 41.667 13.12 0.00 45.42 1.85
618 1005 6.435292 AAGAGGTGCTTCTAAGGACTTTTA 57.565 37.500 13.12 0.00 45.42 1.52
620 1007 4.984146 AAGAGGTGCTTCTAAGGACTTT 57.016 40.909 13.12 3.63 45.42 2.66
621 1008 4.348168 TCAAAGAGGTGCTTCTAAGGACTT 59.652 41.667 13.12 6.52 45.42 3.01
623 1010 4.021016 TCTCAAAGAGGTGCTTCTAAGGAC 60.021 45.833 5.86 5.86 45.39 3.85
624 1011 4.160329 TCTCAAAGAGGTGCTTCTAAGGA 58.840 43.478 0.00 0.00 35.24 3.36
625 1012 4.020662 ACTCTCAAAGAGGTGCTTCTAAGG 60.021 45.833 8.71 0.00 46.45 2.69
626 1013 5.047377 AGACTCTCAAAGAGGTGCTTCTAAG 60.047 44.000 8.71 0.00 46.45 2.18
627 1014 4.835615 AGACTCTCAAAGAGGTGCTTCTAA 59.164 41.667 8.71 0.00 46.45 2.10
628 1015 4.411927 AGACTCTCAAAGAGGTGCTTCTA 58.588 43.478 8.71 0.00 46.45 2.10
629 1016 3.238597 AGACTCTCAAAGAGGTGCTTCT 58.761 45.455 8.71 0.00 46.45 2.85
630 1017 3.676291 AGACTCTCAAAGAGGTGCTTC 57.324 47.619 8.71 0.00 46.45 3.86
631 1018 4.429854 AAAGACTCTCAAAGAGGTGCTT 57.570 40.909 8.71 6.18 46.45 3.91
632 1019 4.429854 AAAAGACTCTCAAAGAGGTGCT 57.570 40.909 8.71 0.83 46.45 4.40
681 1068 4.771054 GTGTTTGGTTCTCTAGTCCTAGGA 59.229 45.833 7.62 7.62 34.06 2.94
683 1070 4.527038 TGGTGTTTGGTTCTCTAGTCCTAG 59.473 45.833 0.00 0.00 34.56 3.02
684 1071 4.282703 GTGGTGTTTGGTTCTCTAGTCCTA 59.717 45.833 0.00 0.00 0.00 2.94
685 1072 3.071167 GTGGTGTTTGGTTCTCTAGTCCT 59.929 47.826 0.00 0.00 0.00 3.85
687 1074 3.071167 AGGTGGTGTTTGGTTCTCTAGTC 59.929 47.826 0.00 0.00 0.00 2.59
688 1075 3.046374 AGGTGGTGTTTGGTTCTCTAGT 58.954 45.455 0.00 0.00 0.00 2.57
689 1076 3.771577 AGGTGGTGTTTGGTTCTCTAG 57.228 47.619 0.00 0.00 0.00 2.43
690 1077 4.657039 ACTTAGGTGGTGTTTGGTTCTCTA 59.343 41.667 0.00 0.00 0.00 2.43
691 1078 3.458487 ACTTAGGTGGTGTTTGGTTCTCT 59.542 43.478 0.00 0.00 0.00 3.10
693 1080 3.945640 ACTTAGGTGGTGTTTGGTTCT 57.054 42.857 0.00 0.00 0.00 3.01
763 1488 6.203808 TCGTTGAGATCTAATCGGAGAAAA 57.796 37.500 10.10 0.00 43.58 2.29
884 1611 9.469807 CGAGGAAGTATATTAATGCTGATATCC 57.530 37.037 0.00 0.00 0.00 2.59
888 1615 9.809096 CATACGAGGAAGTATATTAATGCTGAT 57.191 33.333 0.00 0.00 35.72 2.90
889 1616 8.251026 CCATACGAGGAAGTATATTAATGCTGA 58.749 37.037 0.00 0.00 35.72 4.26
890 1617 8.251026 TCCATACGAGGAAGTATATTAATGCTG 58.749 37.037 0.00 0.00 35.72 4.41
1229 1962 0.895530 GACATCAGGACCGAACTCCA 59.104 55.000 0.00 0.00 31.94 3.86
1294 2027 5.765182 GTGATGGATTAAACTTCCGGATCAT 59.235 40.000 4.15 0.00 35.94 2.45
1347 2080 0.467844 AGTGCAACACAATCCTGCCA 60.468 50.000 0.00 0.00 41.43 4.92
1647 2580 1.379916 CACCTTGGAGATGGTGGCA 59.620 57.895 4.39 0.00 41.48 4.92
1743 2676 1.202758 AGGGTTGCAGATGTGTCGAAA 60.203 47.619 0.00 0.00 0.00 3.46
1752 2685 3.618351 CTTGAAGATGAGGGTTGCAGAT 58.382 45.455 0.00 0.00 0.00 2.90
1969 2909 8.101419 CAGACCCCTAAGTTTTGTATTAACTCT 58.899 37.037 0.00 0.00 34.88 3.24
2023 2963 4.079970 TGGCTACTCGCTAATATACTGCT 58.920 43.478 0.00 0.00 39.13 4.24
2047 3011 0.955905 CATGCATGCCCATCGATCAA 59.044 50.000 14.93 0.00 0.00 2.57
2589 7249 2.746277 GCGTGAAATCCTGGCCGT 60.746 61.111 0.00 0.00 0.00 5.68
3038 7710 2.594962 CGAAGAGGTTGTGCGCGTT 61.595 57.895 8.43 0.00 0.00 4.84
3496 8168 4.314440 AAGAAGAGCGGGCGTGCA 62.314 61.111 3.15 0.00 37.31 4.57
3525 8197 4.487412 CGTAGGTGTCGGCGTCCC 62.487 72.222 6.85 5.42 0.00 4.46
3829 8501 2.260434 GCTGTGCCGTTCTCCGTA 59.740 61.111 0.00 0.00 33.66 4.02
3939 8611 0.883814 GATGATGCCCTTGCTCTCCG 60.884 60.000 0.00 0.00 38.71 4.63
4030 8702 1.840635 GACTGGAGCCCCATAAAGACT 59.159 52.381 0.00 0.00 42.59 3.24
4168 8840 4.836825 ACATGACGACTTTGATCTGGAAT 58.163 39.130 0.00 0.00 0.00 3.01
4339 9017 4.441217 CGGATTTGCTTCTCTGAGATGAGA 60.441 45.833 20.92 8.04 40.87 3.27
4385 9063 4.074627 TGGAACTTGTGATTAACCGTCA 57.925 40.909 0.00 0.00 0.00 4.35
4444 9126 5.580022 AGTAAAGGAACATACAATTGCCCT 58.420 37.500 5.05 0.18 0.00 5.19
4445 9127 5.914898 AGTAAAGGAACATACAATTGCCC 57.085 39.130 5.05 0.00 0.00 5.36
4486 9211 7.860649 TGTCCTAGTCCTCCTTTTTAAACTA 57.139 36.000 0.00 0.00 0.00 2.24
4487 9212 6.758806 TGTCCTAGTCCTCCTTTTTAAACT 57.241 37.500 0.00 0.00 0.00 2.66
4488 9213 7.395617 AGATGTCCTAGTCCTCCTTTTTAAAC 58.604 38.462 0.00 0.00 0.00 2.01
4492 9217 6.044404 TCAAAGATGTCCTAGTCCTCCTTTTT 59.956 38.462 0.00 0.00 0.00 1.94
4493 9218 5.548056 TCAAAGATGTCCTAGTCCTCCTTTT 59.452 40.000 0.00 0.00 0.00 2.27
4494 9219 5.094387 TCAAAGATGTCCTAGTCCTCCTTT 58.906 41.667 0.00 0.00 0.00 3.11
4497 9222 4.678309 CGTTCAAAGATGTCCTAGTCCTCC 60.678 50.000 0.00 0.00 0.00 4.30
4498 9223 4.082136 ACGTTCAAAGATGTCCTAGTCCTC 60.082 45.833 0.00 0.00 0.00 3.71
4499 9224 3.833070 ACGTTCAAAGATGTCCTAGTCCT 59.167 43.478 0.00 0.00 0.00 3.85
4500 9225 3.927142 CACGTTCAAAGATGTCCTAGTCC 59.073 47.826 0.00 0.00 0.00 3.85
4501 9226 3.368236 GCACGTTCAAAGATGTCCTAGTC 59.632 47.826 0.00 0.00 0.00 2.59
4530 9256 2.174639 ACGGATATTGGGCCTTCATGAA 59.825 45.455 8.12 8.12 0.00 2.57
4531 9257 1.774254 ACGGATATTGGGCCTTCATGA 59.226 47.619 4.53 0.00 0.00 3.07
4544 9270 4.460948 ACCTTACAAACACGACGGATAT 57.539 40.909 0.00 0.00 0.00 1.63
4545 9271 3.940209 ACCTTACAAACACGACGGATA 57.060 42.857 0.00 0.00 0.00 2.59
4546 9272 2.825861 ACCTTACAAACACGACGGAT 57.174 45.000 0.00 0.00 0.00 4.18
4547 9273 2.159128 TGAACCTTACAAACACGACGGA 60.159 45.455 0.00 0.00 0.00 4.69
4550 9276 4.603231 TTGTGAACCTTACAAACACGAC 57.397 40.909 0.00 0.00 35.29 4.34
4555 9281 5.831997 AGCAGATTTGTGAACCTTACAAAC 58.168 37.500 5.55 1.74 46.91 2.93
4559 9285 6.651225 AGTCTTAGCAGATTTGTGAACCTTAC 59.349 38.462 0.00 0.00 0.00 2.34
4601 9327 4.551702 AAACAAAGGTCTTGGCAGTTTT 57.448 36.364 0.00 0.00 0.00 2.43
4603 9329 4.551702 AAAAACAAAGGTCTTGGCAGTT 57.448 36.364 0.00 0.00 0.00 3.16
4622 9348 4.869861 GCTTGCTCTTTGGAAACAGAAAAA 59.130 37.500 0.00 0.00 44.54 1.94
4623 9349 4.081752 TGCTTGCTCTTTGGAAACAGAAAA 60.082 37.500 0.00 0.00 44.54 2.29
4624 9350 3.446873 TGCTTGCTCTTTGGAAACAGAAA 59.553 39.130 0.00 0.00 44.54 2.52
4625 9351 3.023119 TGCTTGCTCTTTGGAAACAGAA 58.977 40.909 0.00 0.00 44.54 3.02
4626 9352 2.358898 GTGCTTGCTCTTTGGAAACAGA 59.641 45.455 0.00 0.00 44.54 3.41
4627 9353 2.099592 TGTGCTTGCTCTTTGGAAACAG 59.900 45.455 0.00 0.00 44.54 3.16
4628 9354 2.098614 TGTGCTTGCTCTTTGGAAACA 58.901 42.857 0.00 0.00 39.83 2.83
4629 9355 2.869233 TGTGCTTGCTCTTTGGAAAC 57.131 45.000 0.00 0.00 0.00 2.78
4630 9356 4.556501 CGTATTGTGCTTGCTCTTTGGAAA 60.557 41.667 0.00 0.00 0.00 3.13
4632 9358 2.483877 CGTATTGTGCTTGCTCTTTGGA 59.516 45.455 0.00 0.00 0.00 3.53
4635 9361 4.002982 TCATCGTATTGTGCTTGCTCTTT 58.997 39.130 0.00 0.00 0.00 2.52
4637 9363 2.932614 GTCATCGTATTGTGCTTGCTCT 59.067 45.455 0.00 0.00 0.00 4.09
4639 9365 2.698803 TGTCATCGTATTGTGCTTGCT 58.301 42.857 0.00 0.00 0.00 3.91
4640 9366 3.680642 ATGTCATCGTATTGTGCTTGC 57.319 42.857 0.00 0.00 0.00 4.01
4641 9367 5.200454 GCTTATGTCATCGTATTGTGCTTG 58.800 41.667 0.00 0.00 0.00 4.01
4642 9368 4.875536 TGCTTATGTCATCGTATTGTGCTT 59.124 37.500 0.00 0.00 0.00 3.91
4643 9369 4.441792 TGCTTATGTCATCGTATTGTGCT 58.558 39.130 0.00 0.00 0.00 4.40
4647 9373 4.060900 AGCCTGCTTATGTCATCGTATTG 58.939 43.478 0.00 0.00 0.00 1.90
4648 9374 4.342862 AGCCTGCTTATGTCATCGTATT 57.657 40.909 0.00 0.00 0.00 1.89
4649 9375 4.342862 AAGCCTGCTTATGTCATCGTAT 57.657 40.909 1.81 0.00 34.05 3.06
4650 9376 3.819564 AAGCCTGCTTATGTCATCGTA 57.180 42.857 1.81 0.00 34.05 3.43
4651 9377 2.698855 AAGCCTGCTTATGTCATCGT 57.301 45.000 1.81 0.00 34.05 3.73
4652 9378 3.496130 CCTTAAGCCTGCTTATGTCATCG 59.504 47.826 12.05 0.00 38.20 3.84
4653 9379 4.708177 TCCTTAAGCCTGCTTATGTCATC 58.292 43.478 12.05 0.00 38.20 2.92
4654 9380 4.778213 TCCTTAAGCCTGCTTATGTCAT 57.222 40.909 12.05 0.00 38.20 3.06
4655 9381 4.778213 ATCCTTAAGCCTGCTTATGTCA 57.222 40.909 12.05 4.79 38.20 3.58
4656 9382 7.283354 AGTTTAATCCTTAAGCCTGCTTATGTC 59.717 37.037 12.05 1.29 38.20 3.06
4657 9383 7.119387 AGTTTAATCCTTAAGCCTGCTTATGT 58.881 34.615 12.05 2.97 38.20 2.29
4661 9387 9.868160 ATAATAGTTTAATCCTTAAGCCTGCTT 57.132 29.630 9.63 9.63 39.83 3.91
4682 9408 9.151177 CCCCTCCAACTAAGTACAAGTATAATA 57.849 37.037 0.00 0.00 0.00 0.98
4683 9409 7.847848 TCCCCTCCAACTAAGTACAAGTATAAT 59.152 37.037 0.00 0.00 0.00 1.28
4684 9410 7.191210 TCCCCTCCAACTAAGTACAAGTATAA 58.809 38.462 0.00 0.00 0.00 0.98
4685 9411 6.744822 TCCCCTCCAACTAAGTACAAGTATA 58.255 40.000 0.00 0.00 0.00 1.47
4686 9412 5.596763 TCCCCTCCAACTAAGTACAAGTAT 58.403 41.667 0.00 0.00 0.00 2.12
4688 9414 3.865571 TCCCCTCCAACTAAGTACAAGT 58.134 45.455 0.00 0.00 0.00 3.16
4689 9415 4.576879 GTTCCCCTCCAACTAAGTACAAG 58.423 47.826 0.00 0.00 0.00 3.16
4691 9417 2.564062 CGTTCCCCTCCAACTAAGTACA 59.436 50.000 0.00 0.00 0.00 2.90
4692 9418 2.827921 TCGTTCCCCTCCAACTAAGTAC 59.172 50.000 0.00 0.00 0.00 2.73
4693 9419 3.173953 TCGTTCCCCTCCAACTAAGTA 57.826 47.619 0.00 0.00 0.00 2.24
4694 9420 2.019807 TCGTTCCCCTCCAACTAAGT 57.980 50.000 0.00 0.00 0.00 2.24
4695 9421 2.565834 TCTTCGTTCCCCTCCAACTAAG 59.434 50.000 0.00 0.00 31.12 2.18
4696 9422 2.565834 CTCTTCGTTCCCCTCCAACTAA 59.434 50.000 0.00 0.00 0.00 2.24
4697 9423 2.176889 CTCTTCGTTCCCCTCCAACTA 58.823 52.381 0.00 0.00 0.00 2.24
4698 9424 0.977395 CTCTTCGTTCCCCTCCAACT 59.023 55.000 0.00 0.00 0.00 3.16
4699 9425 0.036294 CCTCTTCGTTCCCCTCCAAC 60.036 60.000 0.00 0.00 0.00 3.77
4703 9429 1.107945 CTCTCCTCTTCGTTCCCCTC 58.892 60.000 0.00 0.00 0.00 4.30
4705 9431 1.107945 CTCTCTCCTCTTCGTTCCCC 58.892 60.000 0.00 0.00 0.00 4.81
4707 9433 4.522722 TTTTCTCTCTCCTCTTCGTTCC 57.477 45.455 0.00 0.00 0.00 3.62
4729 9455 3.439129 GCTCTTATTGTACAACCCGCTTT 59.561 43.478 11.22 0.00 0.00 3.51
4730 9456 3.007635 GCTCTTATTGTACAACCCGCTT 58.992 45.455 11.22 0.00 0.00 4.68
4731 9457 2.629051 GCTCTTATTGTACAACCCGCT 58.371 47.619 11.22 0.00 0.00 5.52
4733 9459 1.931172 CGGCTCTTATTGTACAACCCG 59.069 52.381 11.22 11.82 0.00 5.28
4734 9460 2.285977 CCGGCTCTTATTGTACAACCC 58.714 52.381 11.22 4.13 0.00 4.11
4735 9461 2.981898 ACCGGCTCTTATTGTACAACC 58.018 47.619 11.22 5.53 0.00 3.77
4737 9463 5.987347 GCTATAACCGGCTCTTATTGTACAA 59.013 40.000 11.41 11.41 0.00 2.41
4738 9464 5.069383 TGCTATAACCGGCTCTTATTGTACA 59.931 40.000 0.00 0.00 0.00 2.90
4741 9467 4.377897 GTGCTATAACCGGCTCTTATTGT 58.622 43.478 0.00 0.00 0.00 2.71
4742 9468 3.428870 CGTGCTATAACCGGCTCTTATTG 59.571 47.826 0.00 0.71 0.00 1.90
4743 9469 3.319972 TCGTGCTATAACCGGCTCTTATT 59.680 43.478 0.00 0.00 0.00 1.40
4744 9470 2.889045 TCGTGCTATAACCGGCTCTTAT 59.111 45.455 0.00 0.55 0.00 1.73
4745 9471 2.300433 TCGTGCTATAACCGGCTCTTA 58.700 47.619 0.00 0.00 0.00 2.10
4747 9473 1.108776 TTCGTGCTATAACCGGCTCT 58.891 50.000 0.00 0.00 0.00 4.09
4748 9474 1.591619 GTTTCGTGCTATAACCGGCTC 59.408 52.381 0.00 0.00 0.00 4.70
4749 9475 1.648504 GTTTCGTGCTATAACCGGCT 58.351 50.000 0.00 0.00 0.00 5.52
4750 9476 0.654160 GGTTTCGTGCTATAACCGGC 59.346 55.000 0.00 0.00 32.76 6.13
4751 9477 1.292992 GGGTTTCGTGCTATAACCGG 58.707 55.000 0.00 0.00 41.75 5.28
4753 9479 3.075884 TGTTGGGTTTCGTGCTATAACC 58.924 45.455 0.00 0.00 40.44 2.85
4755 9481 3.741249 TGTGTTGGGTTTCGTGCTATAA 58.259 40.909 0.00 0.00 0.00 0.98
4756 9482 3.404224 TGTGTTGGGTTTCGTGCTATA 57.596 42.857 0.00 0.00 0.00 1.31
4757 9483 2.264005 TGTGTTGGGTTTCGTGCTAT 57.736 45.000 0.00 0.00 0.00 2.97
4758 9484 2.264005 ATGTGTTGGGTTTCGTGCTA 57.736 45.000 0.00 0.00 0.00 3.49
4759 9485 1.398692 AATGTGTTGGGTTTCGTGCT 58.601 45.000 0.00 0.00 0.00 4.40
4760 9486 2.217429 AAATGTGTTGGGTTTCGTGC 57.783 45.000 0.00 0.00 0.00 5.34
4762 9488 5.067273 TCTCATAAATGTGTTGGGTTTCGT 58.933 37.500 0.00 0.00 0.00 3.85
4763 9489 5.621197 TCTCATAAATGTGTTGGGTTTCG 57.379 39.130 0.00 0.00 0.00 3.46
4764 9490 7.378181 ACAATCTCATAAATGTGTTGGGTTTC 58.622 34.615 0.00 0.00 0.00 2.78
4766 9492 6.916360 ACAATCTCATAAATGTGTTGGGTT 57.084 33.333 0.00 0.00 0.00 4.11
4767 9493 7.888021 TCTTACAATCTCATAAATGTGTTGGGT 59.112 33.333 0.00 0.00 0.00 4.51
4768 9494 8.279970 TCTTACAATCTCATAAATGTGTTGGG 57.720 34.615 0.00 0.00 0.00 4.12
4769 9495 9.726232 CATCTTACAATCTCATAAATGTGTTGG 57.274 33.333 0.00 0.00 0.00 3.77
4770 9496 9.726232 CCATCTTACAATCTCATAAATGTGTTG 57.274 33.333 0.00 0.00 0.00 3.33
4771 9497 8.906867 CCCATCTTACAATCTCATAAATGTGTT 58.093 33.333 0.00 0.00 0.00 3.32
4772 9498 7.013655 GCCCATCTTACAATCTCATAAATGTGT 59.986 37.037 0.00 0.00 0.00 3.72
4773 9499 7.365741 GCCCATCTTACAATCTCATAAATGTG 58.634 38.462 0.00 0.00 0.00 3.21
4774 9500 6.491403 GGCCCATCTTACAATCTCATAAATGT 59.509 38.462 0.00 0.00 0.00 2.71
4775 9501 6.491062 TGGCCCATCTTACAATCTCATAAATG 59.509 38.462 0.00 0.00 0.00 2.32
4777 9503 6.012337 TGGCCCATCTTACAATCTCATAAA 57.988 37.500 0.00 0.00 0.00 1.40
4778 9504 5.645056 TGGCCCATCTTACAATCTCATAA 57.355 39.130 0.00 0.00 0.00 1.90
4779 9505 5.132648 AGTTGGCCCATCTTACAATCTCATA 59.867 40.000 0.00 0.00 0.00 2.15
4780 9506 4.079558 AGTTGGCCCATCTTACAATCTCAT 60.080 41.667 0.00 0.00 0.00 2.90
4781 9507 3.266772 AGTTGGCCCATCTTACAATCTCA 59.733 43.478 0.00 0.00 0.00 3.27
4782 9508 3.891049 AGTTGGCCCATCTTACAATCTC 58.109 45.455 0.00 0.00 0.00 2.75
4783 9509 5.653255 ATAGTTGGCCCATCTTACAATCT 57.347 39.130 0.00 0.00 0.00 2.40
4784 9510 7.817418 TTAATAGTTGGCCCATCTTACAATC 57.183 36.000 0.00 0.00 0.00 2.67
4785 9511 9.875708 TTATTAATAGTTGGCCCATCTTACAAT 57.124 29.630 0.00 0.86 0.00 2.71
4786 9512 9.702253 TTTATTAATAGTTGGCCCATCTTACAA 57.298 29.630 0.00 0.00 0.00 2.41
4787 9513 9.702253 TTTTATTAATAGTTGGCCCATCTTACA 57.298 29.630 0.00 0.00 0.00 2.41
4837 9563 9.656040 ACCATGACTTATAAACATAACGTACAA 57.344 29.630 0.00 0.00 0.00 2.41
4838 9564 9.656040 AACCATGACTTATAAACATAACGTACA 57.344 29.630 0.00 0.00 0.00 2.90
4839 9565 9.910511 CAACCATGACTTATAAACATAACGTAC 57.089 33.333 0.00 0.00 0.00 3.67
4842 9568 7.468441 TGCAACCATGACTTATAAACATAACG 58.532 34.615 0.00 0.00 0.00 3.18
4843 9569 7.432252 GCTGCAACCATGACTTATAAACATAAC 59.568 37.037 0.00 0.00 0.00 1.89
4844 9570 7.339212 AGCTGCAACCATGACTTATAAACATAA 59.661 33.333 1.02 0.00 0.00 1.90
4846 9572 5.653769 AGCTGCAACCATGACTTATAAACAT 59.346 36.000 1.02 0.00 0.00 2.71
4847 9573 5.009631 AGCTGCAACCATGACTTATAAACA 58.990 37.500 1.02 0.00 0.00 2.83
4848 9574 5.123820 TCAGCTGCAACCATGACTTATAAAC 59.876 40.000 9.47 0.00 0.00 2.01
4849 9575 5.252547 TCAGCTGCAACCATGACTTATAAA 58.747 37.500 9.47 0.00 0.00 1.40
4850 9576 4.842574 TCAGCTGCAACCATGACTTATAA 58.157 39.130 9.47 0.00 0.00 0.98
4851 9577 4.486125 TCAGCTGCAACCATGACTTATA 57.514 40.909 9.47 0.00 0.00 0.98
4853 9579 2.857186 TCAGCTGCAACCATGACTTA 57.143 45.000 9.47 0.00 0.00 2.24
4854 9580 1.816835 CATCAGCTGCAACCATGACTT 59.183 47.619 9.47 0.00 0.00 3.01
4856 9582 1.131883 GTCATCAGCTGCAACCATGAC 59.868 52.381 22.35 22.35 37.33 3.06
4858 9584 0.454600 GGTCATCAGCTGCAACCATG 59.545 55.000 20.55 14.14 0.00 3.66
4859 9585 1.028330 CGGTCATCAGCTGCAACCAT 61.028 55.000 23.27 6.03 0.00 3.55
4860 9586 1.672030 CGGTCATCAGCTGCAACCA 60.672 57.895 23.27 4.02 0.00 3.67
4861 9587 1.672356 ACGGTCATCAGCTGCAACC 60.672 57.895 9.47 14.54 0.00 3.77
4863 9589 0.250252 TTCACGGTCATCAGCTGCAA 60.250 50.000 9.47 0.00 0.00 4.08
4864 9590 0.950555 GTTCACGGTCATCAGCTGCA 60.951 55.000 9.47 0.00 0.00 4.41
4865 9591 1.639298 GGTTCACGGTCATCAGCTGC 61.639 60.000 9.47 0.00 0.00 5.25
4866 9592 0.036952 AGGTTCACGGTCATCAGCTG 60.037 55.000 7.63 7.63 0.00 4.24
4869 9595 2.169832 AACAGGTTCACGGTCATCAG 57.830 50.000 0.00 0.00 0.00 2.90
4870 9596 3.973206 ATAACAGGTTCACGGTCATCA 57.027 42.857 0.00 0.00 0.00 3.07
4871 9597 6.537301 TGATTTATAACAGGTTCACGGTCATC 59.463 38.462 0.00 0.00 0.00 2.92
4873 9599 5.795972 TGATTTATAACAGGTTCACGGTCA 58.204 37.500 0.00 0.00 0.00 4.02
4877 9603 6.477033 CCTCTCTGATTTATAACAGGTTCACG 59.523 42.308 3.90 0.00 35.20 4.35
4878 9604 6.258947 GCCTCTCTGATTTATAACAGGTTCAC 59.741 42.308 3.90 0.00 35.20 3.18
4879 9605 6.349300 GCCTCTCTGATTTATAACAGGTTCA 58.651 40.000 3.90 0.00 35.20 3.18
4880 9606 5.463724 CGCCTCTCTGATTTATAACAGGTTC 59.536 44.000 3.90 0.00 35.20 3.62
4881 9607 5.360591 CGCCTCTCTGATTTATAACAGGTT 58.639 41.667 3.90 0.00 35.20 3.50
4884 9610 4.950050 ACCGCCTCTCTGATTTATAACAG 58.050 43.478 0.00 0.00 35.72 3.16
4885 9611 5.010719 CCTACCGCCTCTCTGATTTATAACA 59.989 44.000 0.00 0.00 0.00 2.41
4886 9612 5.471257 CCTACCGCCTCTCTGATTTATAAC 58.529 45.833 0.00 0.00 0.00 1.89
4887 9613 4.527038 CCCTACCGCCTCTCTGATTTATAA 59.473 45.833 0.00 0.00 0.00 0.98
4888 9614 4.087182 CCCTACCGCCTCTCTGATTTATA 58.913 47.826 0.00 0.00 0.00 0.98
4889 9615 2.900546 CCCTACCGCCTCTCTGATTTAT 59.099 50.000 0.00 0.00 0.00 1.40
4890 9616 2.091499 TCCCTACCGCCTCTCTGATTTA 60.091 50.000 0.00 0.00 0.00 1.40
4891 9617 1.123928 CCCTACCGCCTCTCTGATTT 58.876 55.000 0.00 0.00 0.00 2.17
4892 9618 0.261991 TCCCTACCGCCTCTCTGATT 59.738 55.000 0.00 0.00 0.00 2.57
4893 9619 0.178975 CTCCCTACCGCCTCTCTGAT 60.179 60.000 0.00 0.00 0.00 2.90
4894 9620 1.227664 CTCCCTACCGCCTCTCTGA 59.772 63.158 0.00 0.00 0.00 3.27
4895 9621 0.395862 TTCTCCCTACCGCCTCTCTG 60.396 60.000 0.00 0.00 0.00 3.35
4896 9622 0.106419 CTTCTCCCTACCGCCTCTCT 60.106 60.000 0.00 0.00 0.00 3.10
4899 9625 1.134759 GTTTCTTCTCCCTACCGCCTC 60.135 57.143 0.00 0.00 0.00 4.70
4900 9626 0.903236 GTTTCTTCTCCCTACCGCCT 59.097 55.000 0.00 0.00 0.00 5.52
4901 9627 0.903236 AGTTTCTTCTCCCTACCGCC 59.097 55.000 0.00 0.00 0.00 6.13
4905 9828 4.629092 ACAAACGAGTTTCTTCTCCCTAC 58.371 43.478 0.00 0.00 0.00 3.18
4908 9831 3.875134 TCAACAAACGAGTTTCTTCTCCC 59.125 43.478 0.00 0.00 0.00 4.30
4922 9845 3.560068 CCGATACATAGGGCTCAACAAAC 59.440 47.826 0.00 0.00 0.00 2.93
4925 9848 1.070134 GCCGATACATAGGGCTCAACA 59.930 52.381 0.00 0.00 43.52 3.33
4935 9858 6.072728 GCATCAAGTATTTTGGCCGATACATA 60.073 38.462 19.68 5.17 32.45 2.29
4936 9859 5.278463 GCATCAAGTATTTTGGCCGATACAT 60.278 40.000 19.68 9.81 32.45 2.29
4961 9884 1.152290 TACAACACCTCCACCCGGA 60.152 57.895 0.73 0.00 39.79 5.14
4964 9887 2.254508 ACTACTACAACACCTCCACCC 58.745 52.381 0.00 0.00 0.00 4.61
4978 9901 4.906065 ATTTCATCGTGGCGTACTACTA 57.094 40.909 0.00 0.00 0.00 1.82
5037 9960 1.346068 AGGAGTGTCTTTGAGGTGCTC 59.654 52.381 0.00 0.00 0.00 4.26
5039 9962 1.070758 TCAGGAGTGTCTTTGAGGTGC 59.929 52.381 0.00 0.00 0.00 5.01
5050 9973 5.728471 CATACAGAAGACATTCAGGAGTGT 58.272 41.667 0.00 0.00 37.94 3.55
5061 9984 3.455543 TCCATGATGGCATACAGAAGACA 59.544 43.478 6.59 0.00 37.47 3.41
5063 9986 3.455543 TGTCCATGATGGCATACAGAAGA 59.544 43.478 6.59 0.00 37.47 2.87
5079 10002 2.216046 CACATTAGCTGCGATGTCCAT 58.784 47.619 17.67 0.00 34.42 3.41
5085 10008 1.303309 GCTTCCACATTAGCTGCGAT 58.697 50.000 0.00 0.00 34.57 4.58
5104 10027 0.961019 CATTGGCCATTGGGTATCGG 59.039 55.000 18.15 0.00 36.17 4.18
5112 10035 1.173043 ACCGTACACATTGGCCATTG 58.827 50.000 23.01 23.01 0.00 2.82
5113 10036 2.791347 TACCGTACACATTGGCCATT 57.209 45.000 6.09 0.00 0.00 3.16
5114 10037 2.438021 AGATACCGTACACATTGGCCAT 59.562 45.455 6.09 0.00 0.00 4.40
5115 10038 1.834896 AGATACCGTACACATTGGCCA 59.165 47.619 0.00 0.00 0.00 5.36
5116 10039 2.480845 GAGATACCGTACACATTGGCC 58.519 52.381 0.00 0.00 0.00 5.36
5117 10040 2.124903 CGAGATACCGTACACATTGGC 58.875 52.381 0.00 0.00 0.00 4.52
5118 10041 3.703286 TCGAGATACCGTACACATTGG 57.297 47.619 0.00 0.00 0.00 3.16
5119 10042 4.607955 ACATCGAGATACCGTACACATTG 58.392 43.478 0.00 0.00 0.00 2.82
5124 10047 2.620115 GGGAACATCGAGATACCGTACA 59.380 50.000 0.00 0.00 0.00 2.90
5138 10061 1.675641 GAAGGCAGCGTGGGAACAT 60.676 57.895 0.00 0.00 46.14 2.71
5139 10062 2.281484 GAAGGCAGCGTGGGAACA 60.281 61.111 0.00 0.00 38.70 3.18
5140 10063 2.281484 TGAAGGCAGCGTGGGAAC 60.281 61.111 0.00 0.00 0.00 3.62
5157 10080 1.605712 GCTGTTCCTAGTTCACGTGCT 60.606 52.381 11.67 5.74 0.00 4.40
5171 10094 0.250467 TGCTCCCAGAAGTGCTGTTC 60.250 55.000 0.00 0.00 43.33 3.18
5173 10096 1.072159 GTGCTCCCAGAAGTGCTGT 59.928 57.895 0.00 0.00 43.33 4.40
5175 10098 0.403271 AATGTGCTCCCAGAAGTGCT 59.597 50.000 0.00 0.00 0.00 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.