Multiple sequence alignment - TraesCS2D01G550600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G550600 chr2D 100.000 4870 0 0 1 4870 626426918 626422049 0.000000e+00 8994.0
1 TraesCS2D01G550600 chr2D 91.671 1813 146 4 2134 3943 626171267 626173077 0.000000e+00 2507.0
2 TraesCS2D01G550600 chr2D 82.778 2311 357 27 1631 3931 626385747 626388026 0.000000e+00 2025.0
3 TraesCS2D01G550600 chr2D 83.314 1744 271 12 2134 3870 626587706 626589436 0.000000e+00 1591.0
4 TraesCS2D01G550600 chr2D 90.062 805 68 7 1254 2048 626170466 626171268 0.000000e+00 1033.0
5 TraesCS2D01G550600 chr2D 86.548 394 53 0 1655 2048 626587314 626587707 7.490000e-118 435.0
6 TraesCS2D01G550600 chr2D 89.426 331 35 0 882 1212 626169492 626169822 7.540000e-113 418.0
7 TraesCS2D01G550600 chr2D 82.103 447 48 18 222 667 626585335 626585750 2.160000e-93 353.0
8 TraesCS2D01G550600 chr2D 80.442 317 54 4 1279 1590 626586721 626587034 8.150000e-58 235.0
9 TraesCS2D01G550600 chr2D 90.361 166 16 0 487 652 626585953 626586118 8.210000e-53 219.0
10 TraesCS2D01G550600 chr2D 84.146 164 17 5 4675 4829 626269747 626269910 3.040000e-32 150.0
11 TraesCS2D01G550600 chr2D 83.898 118 17 2 4559 4675 585029784 585029900 1.430000e-20 111.0
12 TraesCS2D01G550600 chr2A 91.448 2701 215 12 1256 3943 756371266 756368569 0.000000e+00 3694.0
13 TraesCS2D01G550600 chr2A 98.131 1819 34 0 2089 3907 756133265 756131447 0.000000e+00 3171.0
14 TraesCS2D01G550600 chr2A 82.578 2250 353 26 1638 3876 756028844 756031065 0.000000e+00 1947.0
15 TraesCS2D01G550600 chr2A 82.322 2291 362 28 1638 3913 757002274 757000012 0.000000e+00 1947.0
16 TraesCS2D01G550600 chr2A 93.798 1290 69 9 804 2090 756134650 756133369 0.000000e+00 1929.0
17 TraesCS2D01G550600 chr2A 83.163 1764 274 15 2134 3888 757367121 757365372 0.000000e+00 1591.0
18 TraesCS2D01G550600 chr2A 83.068 1760 270 19 2134 3882 757332504 757334246 0.000000e+00 1574.0
19 TraesCS2D01G550600 chr2A 89.852 473 44 1 339 807 756135075 756134603 5.390000e-169 604.0
20 TraesCS2D01G550600 chr2A 89.426 331 35 0 882 1212 756371977 756371647 7.540000e-113 418.0
21 TraesCS2D01G550600 chr2A 89.542 306 31 1 4167 4471 57446597 57446292 2.130000e-103 387.0
22 TraesCS2D01G550600 chr2A 89.542 306 31 1 4168 4472 663633307 663633002 2.130000e-103 387.0
23 TraesCS2D01G550600 chr2A 93.496 246 11 4 3925 4169 756131268 756131027 1.290000e-95 361.0
24 TraesCS2D01G550600 chr2A 92.093 215 17 0 4557 4771 756130959 756130745 2.200000e-78 303.0
25 TraesCS2D01G550600 chr2A 87.347 245 31 0 511 755 757321458 757321702 1.030000e-71 281.0
26 TraesCS2D01G550600 chr2A 90.000 190 16 1 228 417 757320883 757321069 4.870000e-60 243.0
27 TraesCS2D01G550600 chr2A 78.743 334 69 2 1257 1590 757371557 757371226 6.340000e-54 222.0
28 TraesCS2D01G550600 chr2A 90.533 169 12 2 486 652 757321715 757321881 2.280000e-53 220.0
29 TraesCS2D01G550600 chr2A 78.165 316 64 4 1279 1590 757322677 757322991 3.850000e-46 196.0
30 TraesCS2D01G550600 chr2A 90.909 143 13 0 409 551 756135114 756134972 4.970000e-45 193.0
31 TraesCS2D01G550600 chr2A 100.000 73 0 0 4779 4851 756130380 756130452 8.500000e-28 135.0
32 TraesCS2D01G550600 chr2A 72.455 334 77 9 884 1209 756057368 756057694 5.190000e-15 93.5
33 TraesCS2D01G550600 chr2A 95.455 44 2 0 339 382 757321077 757321120 2.430000e-08 71.3
34 TraesCS2D01G550600 chr2B 95.371 1858 83 2 2101 3958 767891228 767893082 0.000000e+00 2952.0
35 TraesCS2D01G550600 chr2B 93.060 1830 124 2 2134 3962 767774311 767776138 0.000000e+00 2673.0
36 TraesCS2D01G550600 chr2B 91.367 1946 119 15 180 2111 767889141 767891051 0.000000e+00 2617.0
37 TraesCS2D01G550600 chr2B 83.888 1744 261 13 2134 3870 768053155 768054885 0.000000e+00 1646.0
38 TraesCS2D01G550600 chr2B 86.944 720 73 9 883 1582 767933928 767933210 0.000000e+00 789.0
39 TraesCS2D01G550600 chr2B 85.910 731 73 8 883 1583 767768183 767768913 0.000000e+00 752.0
40 TraesCS2D01G550600 chr2B 91.102 472 31 7 1588 2048 767773841 767774312 3.200000e-176 628.0
41 TraesCS2D01G550600 chr2B 81.443 582 75 15 187 755 768050475 768051036 3.460000e-121 446.0
42 TraesCS2D01G550600 chr2B 86.041 394 55 0 1655 2048 768052763 768053156 1.620000e-114 424.0
43 TraesCS2D01G550600 chr2B 89.697 330 34 0 883 1212 767760962 767761291 5.830000e-114 422.0
44 TraesCS2D01G550600 chr2B 78.689 305 65 0 1286 1590 768052159 768052463 2.300000e-48 204.0
45 TraesCS2D01G550600 chr2B 81.349 252 40 5 4471 4721 767895359 767895604 1.070000e-46 198.0
46 TraesCS2D01G550600 chr2B 92.593 135 10 0 518 652 768051415 768051549 1.380000e-45 195.0
47 TraesCS2D01G550600 chr2B 88.889 144 14 2 1 144 118465779 118465638 5.010000e-40 176.0
48 TraesCS2D01G550600 chr2B 94.643 112 6 0 448 559 767889299 767889410 1.800000e-39 174.0
49 TraesCS2D01G550600 chr2B 86.047 129 12 3 4033 4161 767895229 767895351 3.060000e-27 134.0
50 TraesCS2D01G550600 chr2B 92.453 53 3 1 756 807 767889746 767889798 1.880000e-09 75.0
51 TraesCS2D01G550600 chrUn 82.578 2250 353 26 1638 3876 180890008 180892229 0.000000e+00 1947.0
52 TraesCS2D01G550600 chrUn 73.878 245 59 3 971 1212 321073451 321073209 5.190000e-15 93.5
53 TraesCS2D01G550600 chr7D 78.532 722 120 30 1659 2363 571708684 571709387 4.470000e-120 442.0
54 TraesCS2D01G550600 chr7D 90.820 305 27 1 4168 4471 239629081 239628777 1.630000e-109 407.0
55 TraesCS2D01G550600 chr7D 89.869 306 29 2 4167 4471 131653952 131653648 4.570000e-105 392.0
56 TraesCS2D01G550600 chr7D 83.193 119 19 1 4557 4675 318467707 318467590 1.850000e-19 108.0
57 TraesCS2D01G550600 chr7D 92.308 39 3 0 4471 4509 620720044 620720006 6.810000e-04 56.5
58 TraesCS2D01G550600 chr3D 89.902 307 29 2 4167 4471 14047165 14046859 1.270000e-105 394.0
59 TraesCS2D01G550600 chr3D 93.506 154 8 1 1 152 38215575 38215422 1.360000e-55 228.0
60 TraesCS2D01G550600 chr3D 89.116 147 15 1 1 147 433426614 433426759 1.080000e-41 182.0
61 TraesCS2D01G550600 chr3D 83.333 120 17 3 4557 4675 165239466 165239349 1.850000e-19 108.0
62 TraesCS2D01G550600 chr4D 89.836 305 29 2 4168 4471 421335517 421335214 1.640000e-104 390.0
63 TraesCS2D01G550600 chr4D 86.842 152 16 4 1 149 50424285 50424435 3.020000e-37 167.0
64 TraesCS2D01G550600 chr4D 87.586 145 15 3 3 146 85284865 85284723 1.080000e-36 165.0
65 TraesCS2D01G550600 chr4D 85.806 155 19 3 1 153 122727232 122727079 1.400000e-35 161.0
66 TraesCS2D01G550600 chr4D 81.746 126 21 2 4551 4675 67706172 67706296 2.400000e-18 104.0
67 TraesCS2D01G550600 chr4D 82.114 123 20 2 4551 4672 192085577 192085698 2.400000e-18 104.0
68 TraesCS2D01G550600 chr3A 89.836 305 30 1 4168 4471 58927857 58928161 1.640000e-104 390.0
69 TraesCS2D01G550600 chr1B 89.103 312 33 1 4168 4478 425296993 425297304 2.130000e-103 387.0
70 TraesCS2D01G550600 chr1D 89.542 306 29 3 4168 4471 471007893 471008197 7.650000e-103 385.0
71 TraesCS2D01G550600 chr7B 83.249 394 57 8 1659 2049 627951438 627951825 2.160000e-93 353.0
72 TraesCS2D01G550600 chr7B 100.000 34 0 0 722 755 666649659 666649692 4.070000e-06 63.9
73 TraesCS2D01G550600 chr6D 88.489 139 14 2 1 139 436407610 436407746 3.020000e-37 167.0
74 TraesCS2D01G550600 chr5D 87.586 145 16 2 1 144 550513357 550513214 3.020000e-37 167.0
75 TraesCS2D01G550600 chr7A 87.857 140 15 2 1 138 459462555 459462694 3.900000e-36 163.0
76 TraesCS2D01G550600 chr5A 85.000 120 15 3 4557 4675 63977238 63977121 8.560000e-23 119.0
77 TraesCS2D01G550600 chr4B 85.088 114 17 0 4565 4678 480535816 480535929 3.080000e-22 117.0
78 TraesCS2D01G550600 chr4A 83.200 125 20 1 4551 4675 472960114 472960237 3.980000e-21 113.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G550600 chr2D 626422049 626426918 4869 True 8994.000000 8994 100.000000 1 4870 1 chr2D.!!$R1 4869
1 TraesCS2D01G550600 chr2D 626385747 626388026 2279 False 2025.000000 2025 82.778000 1631 3931 1 chr2D.!!$F3 2300
2 TraesCS2D01G550600 chr2D 626169492 626173077 3585 False 1319.333333 2507 90.386333 882 3943 3 chr2D.!!$F4 3061
3 TraesCS2D01G550600 chr2D 626585335 626589436 4101 False 566.600000 1591 84.553600 222 3870 5 chr2D.!!$F5 3648
4 TraesCS2D01G550600 chr2A 756368569 756371977 3408 True 2056.000000 3694 90.437000 882 3943 2 chr2A.!!$R7 3061
5 TraesCS2D01G550600 chr2A 756028844 756031065 2221 False 1947.000000 1947 82.578000 1638 3876 1 chr2A.!!$F1 2238
6 TraesCS2D01G550600 chr2A 757000012 757002274 2262 True 1947.000000 1947 82.322000 1638 3913 1 chr2A.!!$R3 2275
7 TraesCS2D01G550600 chr2A 757365372 757367121 1749 True 1591.000000 1591 83.163000 2134 3888 1 chr2A.!!$R4 1754
8 TraesCS2D01G550600 chr2A 757332504 757334246 1742 False 1574.000000 1574 83.068000 2134 3882 1 chr2A.!!$F4 1748
9 TraesCS2D01G550600 chr2A 756130745 756135114 4369 True 1093.500000 3171 93.046500 339 4771 6 chr2A.!!$R6 4432
10 TraesCS2D01G550600 chr2A 757320883 757322991 2108 False 202.260000 281 88.300000 228 1590 5 chr2A.!!$F5 1362
11 TraesCS2D01G550600 chr2B 767773841 767776138 2297 False 1650.500000 2673 92.081000 1588 3962 2 chr2B.!!$F3 2374
12 TraesCS2D01G550600 chr2B 767889141 767895604 6463 False 1025.000000 2952 90.205000 180 4721 6 chr2B.!!$F4 4541
13 TraesCS2D01G550600 chr2B 767933210 767933928 718 True 789.000000 789 86.944000 883 1582 1 chr2B.!!$R2 699
14 TraesCS2D01G550600 chr2B 767768183 767768913 730 False 752.000000 752 85.910000 883 1583 1 chr2B.!!$F2 700
15 TraesCS2D01G550600 chr2B 768050475 768054885 4410 False 583.000000 1646 84.530800 187 3870 5 chr2B.!!$F5 3683
16 TraesCS2D01G550600 chrUn 180890008 180892229 2221 False 1947.000000 1947 82.578000 1638 3876 1 chrUn.!!$F1 2238
17 TraesCS2D01G550600 chr7D 571708684 571709387 703 False 442.000000 442 78.532000 1659 2363 1 chr7D.!!$F1 704

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
174 175 0.035725 TCGTAGAGCAAGTCTCGGGA 60.036 55.000 0.00 0.0 46.44 5.14 F
1423 3028 0.038166 TTCCTCGGGCTTGAGCAATT 59.962 50.000 5.24 0.0 44.36 2.32 F
1547 3152 0.387367 CACGTCCTCTTCGACACCTG 60.387 60.000 0.00 0.0 32.74 4.00 F
2049 3909 1.082117 GCCGTACTGGTCATTCGGTG 61.082 60.000 0.00 0.0 42.62 4.94 F
2642 4902 1.610624 CCCTACCGCATCAACAACACT 60.611 52.381 0.00 0.0 0.00 3.55 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1528 3133 0.387367 CAGGTGTCGAAGAGGACGTG 60.387 60.000 0.00 0.0 39.83 4.49 R
2621 4881 0.687920 TGTTGTTGATGCGGTAGGGA 59.312 50.000 0.00 0.0 0.00 4.20 R
3247 5507 1.078848 GGAGAGACAAGCACGCCAT 60.079 57.895 0.00 0.0 0.00 4.40 R
3790 6056 1.270625 TGACGGTGAACACTCCATTCC 60.271 52.381 4.96 0.0 0.00 3.01 R
4460 8967 0.030369 GTATGTGCGTACTCCCTCCG 59.970 60.000 4.97 0.0 0.00 4.63 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.350368 TGTCACATCTAAGCTTCCACAA 57.650 40.909 0.00 0.00 0.00 3.33
22 23 4.713553 TGTCACATCTAAGCTTCCACAAA 58.286 39.130 0.00 0.00 0.00 2.83
23 24 5.316167 TGTCACATCTAAGCTTCCACAAAT 58.684 37.500 0.00 0.00 0.00 2.32
24 25 6.472016 TGTCACATCTAAGCTTCCACAAATA 58.528 36.000 0.00 0.00 0.00 1.40
25 26 7.112122 TGTCACATCTAAGCTTCCACAAATAT 58.888 34.615 0.00 0.00 0.00 1.28
27 28 9.277783 GTCACATCTAAGCTTCCACAAATATAT 57.722 33.333 0.00 0.00 0.00 0.86
33 34 9.791801 TCTAAGCTTCCACAAATATATAATGCA 57.208 29.630 0.00 0.00 0.00 3.96
35 36 6.917533 AGCTTCCACAAATATATAATGCAGC 58.082 36.000 0.00 0.00 0.00 5.25
37 38 6.805271 GCTTCCACAAATATATAATGCAGCAG 59.195 38.462 0.00 0.00 0.00 4.24
94 95 3.374745 CACAAACAAAGTGGACATCTGC 58.625 45.455 0.00 0.00 33.43 4.26
95 96 3.067180 CACAAACAAAGTGGACATCTGCT 59.933 43.478 0.00 0.00 33.43 4.24
96 97 3.701040 ACAAACAAAGTGGACATCTGCTT 59.299 39.130 0.00 0.00 0.00 3.91
97 98 4.887071 ACAAACAAAGTGGACATCTGCTTA 59.113 37.500 0.00 0.00 0.00 3.09
98 99 5.009010 ACAAACAAAGTGGACATCTGCTTAG 59.991 40.000 0.00 0.00 0.00 2.18
99 100 4.623932 ACAAAGTGGACATCTGCTTAGA 57.376 40.909 0.00 0.00 0.00 2.10
100 101 5.171339 ACAAAGTGGACATCTGCTTAGAT 57.829 39.130 0.00 0.00 0.00 1.98
114 115 8.923683 CATCTGCTTAGATGTGACATAACTATG 58.076 37.037 0.00 0.92 40.42 2.23
129 130 8.407457 ACATAACTATGTCACGTCTAAATGTG 57.593 34.615 0.00 0.00 42.96 3.21
130 131 8.033038 ACATAACTATGTCACGTCTAAATGTGT 58.967 33.333 0.00 0.00 42.96 3.72
131 132 8.869897 CATAACTATGTCACGTCTAAATGTGTT 58.130 33.333 0.00 0.00 42.12 3.32
132 133 6.946229 ACTATGTCACGTCTAAATGTGTTC 57.054 37.500 0.00 0.00 42.12 3.18
133 134 6.688578 ACTATGTCACGTCTAAATGTGTTCT 58.311 36.000 0.00 0.00 42.12 3.01
134 135 7.823665 ACTATGTCACGTCTAAATGTGTTCTA 58.176 34.615 0.00 0.00 42.12 2.10
135 136 7.968956 ACTATGTCACGTCTAAATGTGTTCTAG 59.031 37.037 0.00 0.00 42.12 2.43
136 137 6.321848 TGTCACGTCTAAATGTGTTCTAGA 57.678 37.500 0.00 0.00 42.12 2.43
137 138 6.147581 TGTCACGTCTAAATGTGTTCTAGAC 58.852 40.000 0.00 0.00 42.12 2.59
138 139 6.147581 GTCACGTCTAAATGTGTTCTAGACA 58.852 40.000 0.00 0.00 40.99 3.41
150 151 5.367945 TGTTCTAGACACACCCTTTTTCT 57.632 39.130 0.00 0.00 32.00 2.52
151 152 5.751586 TGTTCTAGACACACCCTTTTTCTT 58.248 37.500 0.00 0.00 32.00 2.52
152 153 5.820947 TGTTCTAGACACACCCTTTTTCTTC 59.179 40.000 0.00 0.00 32.00 2.87
153 154 5.888982 TCTAGACACACCCTTTTTCTTCT 57.111 39.130 0.00 0.00 0.00 2.85
154 155 6.248569 TCTAGACACACCCTTTTTCTTCTT 57.751 37.500 0.00 0.00 0.00 2.52
155 156 6.659824 TCTAGACACACCCTTTTTCTTCTTT 58.340 36.000 0.00 0.00 0.00 2.52
156 157 5.836821 AGACACACCCTTTTTCTTCTTTC 57.163 39.130 0.00 0.00 0.00 2.62
157 158 4.335594 AGACACACCCTTTTTCTTCTTTCG 59.664 41.667 0.00 0.00 0.00 3.46
158 159 4.014406 ACACACCCTTTTTCTTCTTTCGT 58.986 39.130 0.00 0.00 0.00 3.85
159 160 5.187687 ACACACCCTTTTTCTTCTTTCGTA 58.812 37.500 0.00 0.00 0.00 3.43
160 161 5.296035 ACACACCCTTTTTCTTCTTTCGTAG 59.704 40.000 0.00 0.00 0.00 3.51
161 162 5.526111 CACACCCTTTTTCTTCTTTCGTAGA 59.474 40.000 0.00 0.00 0.00 2.59
162 163 5.758784 ACACCCTTTTTCTTCTTTCGTAGAG 59.241 40.000 0.00 0.00 38.43 2.43
163 164 4.755629 ACCCTTTTTCTTCTTTCGTAGAGC 59.244 41.667 0.00 0.00 38.43 4.09
164 165 4.755123 CCCTTTTTCTTCTTTCGTAGAGCA 59.245 41.667 0.00 0.00 38.43 4.26
165 166 5.238650 CCCTTTTTCTTCTTTCGTAGAGCAA 59.761 40.000 0.00 0.00 38.43 3.91
166 167 6.366630 CCTTTTTCTTCTTTCGTAGAGCAAG 58.633 40.000 0.00 0.00 38.43 4.01
167 168 6.017852 CCTTTTTCTTCTTTCGTAGAGCAAGT 60.018 38.462 0.00 0.00 38.43 3.16
168 169 6.526566 TTTTCTTCTTTCGTAGAGCAAGTC 57.473 37.500 0.00 0.00 38.43 3.01
169 170 5.455056 TTCTTCTTTCGTAGAGCAAGTCT 57.545 39.130 0.00 0.00 38.43 3.24
170 171 5.049398 TCTTCTTTCGTAGAGCAAGTCTC 57.951 43.478 0.00 0.00 42.21 3.36
171 172 3.473093 TCTTTCGTAGAGCAAGTCTCG 57.527 47.619 0.00 0.00 46.44 4.04
172 173 2.161808 TCTTTCGTAGAGCAAGTCTCGG 59.838 50.000 0.00 0.00 46.44 4.63
173 174 0.809385 TTCGTAGAGCAAGTCTCGGG 59.191 55.000 0.00 0.00 46.44 5.14
174 175 0.035725 TCGTAGAGCAAGTCTCGGGA 60.036 55.000 0.00 0.00 46.44 5.14
175 176 0.378962 CGTAGAGCAAGTCTCGGGAG 59.621 60.000 0.00 0.00 46.44 4.30
176 177 0.741915 GTAGAGCAAGTCTCGGGAGG 59.258 60.000 0.00 0.00 46.44 4.30
177 178 0.624254 TAGAGCAAGTCTCGGGAGGA 59.376 55.000 0.00 0.00 46.44 3.71
178 179 0.682855 AGAGCAAGTCTCGGGAGGAG 60.683 60.000 0.00 0.00 46.44 3.69
179 180 1.671901 GAGCAAGTCTCGGGAGGAGG 61.672 65.000 0.00 0.00 43.34 4.30
180 181 1.682684 GCAAGTCTCGGGAGGAGGA 60.683 63.158 0.00 0.00 43.34 3.71
181 182 1.258445 GCAAGTCTCGGGAGGAGGAA 61.258 60.000 0.00 0.00 43.34 3.36
182 183 1.267121 CAAGTCTCGGGAGGAGGAAA 58.733 55.000 0.00 0.00 43.34 3.13
183 184 1.623811 CAAGTCTCGGGAGGAGGAAAA 59.376 52.381 0.00 0.00 43.34 2.29
184 185 2.025636 AGTCTCGGGAGGAGGAAAAA 57.974 50.000 0.00 0.00 43.34 1.94
185 186 1.903183 AGTCTCGGGAGGAGGAAAAAG 59.097 52.381 0.00 0.00 43.34 2.27
219 220 7.095017 GGACTGGCTGATTATATGCTTCTTTAC 60.095 40.741 0.00 0.00 0.00 2.01
222 223 7.508687 TGGCTGATTATATGCTTCTTTACTGA 58.491 34.615 0.00 0.00 0.00 3.41
235 236 7.820386 TGCTTCTTTACTGAACAATTACGGATA 59.180 33.333 0.00 0.00 0.00 2.59
303 311 1.001248 CGTGGGGAGAGGGGTTAGA 59.999 63.158 0.00 0.00 0.00 2.10
308 316 3.784202 GTGGGGAGAGGGGTTAGATTTAA 59.216 47.826 0.00 0.00 0.00 1.52
314 322 5.396548 GGAGAGGGGTTAGATTTAAGTCACC 60.397 48.000 0.44 0.36 0.00 4.02
353 361 9.790344 CAACCAATCCTCATAATTAGAGAGATT 57.210 33.333 15.63 14.84 35.40 2.40
403 438 5.695424 ACCAGGGTCTACTTCTTTTATCC 57.305 43.478 0.00 0.00 0.00 2.59
679 1032 9.661563 ATGTTAGAACTGAACCGTTATAATTCA 57.338 29.630 1.21 1.21 34.37 2.57
680 1033 8.928733 TGTTAGAACTGAACCGTTATAATTCAC 58.071 33.333 0.00 0.00 34.37 3.18
683 1036 5.773239 ACTGAACCGTTATAATTCACACG 57.227 39.130 0.00 0.00 0.00 4.49
697 1103 4.837896 TTCACACGCACCAAATAAATGA 57.162 36.364 0.00 0.00 0.00 2.57
701 1107 4.155099 CACACGCACCAAATAAATGACCTA 59.845 41.667 0.00 0.00 0.00 3.08
779 1189 1.153188 ATCATGGCGTGATTGCGGA 60.153 52.632 16.37 0.00 45.25 5.54
820 1230 3.319198 AGATCACGGCGGGGTTGT 61.319 61.111 10.28 0.00 0.00 3.32
1099 2040 2.708051 ACTATGAAGTCGAGTCGGTCA 58.292 47.619 13.54 13.88 0.00 4.02
1148 2089 1.880646 GCTGAAACTTGTAGGCGGGAA 60.881 52.381 0.00 0.00 0.00 3.97
1252 2544 8.432805 TCTTTCTTTCAAGAGAGGTACAAATCT 58.567 33.333 7.14 0.00 37.72 2.40
1281 2885 7.594758 CACCGTTTTAATTTTGACATGACTGAT 59.405 33.333 0.00 0.00 0.00 2.90
1423 3028 0.038166 TTCCTCGGGCTTGAGCAATT 59.962 50.000 5.24 0.00 44.36 2.32
1443 3048 3.429372 TTCCTTGCCCGGCAACAGT 62.429 57.895 21.31 0.00 43.99 3.55
1446 3051 1.302511 CTTGCCCGGCAACAGTACT 60.303 57.895 21.31 0.00 43.99 2.73
1456 3061 2.354704 GGCAACAGTACTATGTCCAGCA 60.355 50.000 0.00 0.00 31.50 4.41
1547 3152 0.387367 CACGTCCTCTTCGACACCTG 60.387 60.000 0.00 0.00 32.74 4.00
1552 3157 4.717629 TCTTCGACACCTGCGCCG 62.718 66.667 4.18 0.00 0.00 6.46
1627 3464 3.318557 GCTAGTTGATCCGTAAGTAGCCT 59.681 47.826 15.45 0.00 45.07 4.58
1628 3465 4.518211 GCTAGTTGATCCGTAAGTAGCCTA 59.482 45.833 15.45 0.00 45.07 3.93
1629 3466 5.183522 GCTAGTTGATCCGTAAGTAGCCTAT 59.816 44.000 15.45 0.00 45.07 2.57
1739 3599 2.480419 CGAGCAGACAAAACGGAGATTT 59.520 45.455 0.00 0.00 30.98 2.17
1775 3635 2.607187 GACACGTTCACGATCTGGAAT 58.393 47.619 6.30 0.00 43.02 3.01
2049 3909 1.082117 GCCGTACTGGTCATTCGGTG 61.082 60.000 0.00 0.00 42.62 4.94
2095 3955 5.180117 AGTTCCGTGCATGCTTATATCAATC 59.820 40.000 20.33 0.30 0.00 2.67
2100 3968 5.849604 CGTGCATGCTTATATCAATCTGTTG 59.150 40.000 20.33 0.00 36.65 3.33
2102 3970 7.307337 CGTGCATGCTTATATCAATCTGTTGTA 60.307 37.037 20.33 0.00 36.69 2.41
2106 3974 7.930513 TGCTTATATCAATCTGTTGTACTCG 57.069 36.000 0.00 0.00 36.69 4.18
2113 4160 4.401202 TCAATCTGTTGTACTCGCCTGATA 59.599 41.667 0.00 0.00 36.69 2.15
2621 4881 2.096174 GCTCAACGAGTACGATGACTCT 59.904 50.000 12.63 1.48 43.96 3.24
2642 4902 1.610624 CCCTACCGCATCAACAACACT 60.611 52.381 0.00 0.00 0.00 3.55
3207 5467 6.036926 TCTTCTTCTCCTATCCTCAGGATT 57.963 41.667 12.79 0.00 43.83 3.01
3790 6056 4.760047 CGGCACCAAGTCCCGGAG 62.760 72.222 0.73 0.00 38.42 4.63
4016 6756 8.186178 TCATTTAAGAGAAGTAAATCGTGCTC 57.814 34.615 0.00 0.00 30.47 4.26
4018 6758 7.813852 TTTAAGAGAAGTAAATCGTGCTCTC 57.186 36.000 0.00 0.00 32.01 3.20
4059 8565 5.397142 AATTGCTCCTTTGACCATCTTTC 57.603 39.130 0.00 0.00 0.00 2.62
4060 8566 3.795688 TGCTCCTTTGACCATCTTTCT 57.204 42.857 0.00 0.00 0.00 2.52
4061 8567 4.104383 TGCTCCTTTGACCATCTTTCTT 57.896 40.909 0.00 0.00 0.00 2.52
4062 8568 5.241403 TGCTCCTTTGACCATCTTTCTTA 57.759 39.130 0.00 0.00 0.00 2.10
4065 8571 6.823689 TGCTCCTTTGACCATCTTTCTTATAC 59.176 38.462 0.00 0.00 0.00 1.47
4075 8581 5.279056 CCATCTTTCTTATACGGAGAGGGAC 60.279 48.000 7.83 0.00 39.88 4.46
4085 8591 2.288640 ACGGAGAGGGACTTTTACGTTG 60.289 50.000 0.00 0.00 39.26 4.10
4172 8679 4.475763 CGCAGACGTTCATCTATACTCT 57.524 45.455 0.00 0.00 33.53 3.24
4173 8680 4.459606 CGCAGACGTTCATCTATACTCTC 58.540 47.826 0.00 0.00 33.53 3.20
4174 8681 4.212425 CGCAGACGTTCATCTATACTCTCT 59.788 45.833 0.00 0.00 33.53 3.10
4175 8682 5.613795 CGCAGACGTTCATCTATACTCTCTC 60.614 48.000 0.00 0.00 33.53 3.20
4176 8683 5.334569 GCAGACGTTCATCTATACTCTCTCC 60.335 48.000 0.00 0.00 0.00 3.71
4177 8684 4.992319 AGACGTTCATCTATACTCTCTCCG 59.008 45.833 0.00 0.00 0.00 4.63
4178 8685 4.706035 ACGTTCATCTATACTCTCTCCGT 58.294 43.478 0.00 0.00 0.00 4.69
4179 8686 5.124645 ACGTTCATCTATACTCTCTCCGTT 58.875 41.667 0.00 0.00 0.00 4.44
4180 8687 5.236911 ACGTTCATCTATACTCTCTCCGTTC 59.763 44.000 0.00 0.00 0.00 3.95
4181 8688 5.612925 CGTTCATCTATACTCTCTCCGTTCG 60.613 48.000 0.00 0.00 0.00 3.95
4182 8689 4.316645 TCATCTATACTCTCTCCGTTCGG 58.683 47.826 4.74 4.74 0.00 4.30
4183 8690 3.834489 TCTATACTCTCTCCGTTCGGT 57.166 47.619 11.04 0.00 0.00 4.69
4184 8691 3.464907 TCTATACTCTCTCCGTTCGGTG 58.535 50.000 11.04 8.89 0.00 4.94
4185 8692 2.414994 ATACTCTCTCCGTTCGGTGA 57.585 50.000 13.84 13.84 0.00 4.02
4186 8693 2.189594 TACTCTCTCCGTTCGGTGAA 57.810 50.000 15.06 7.40 0.00 3.18
4187 8694 0.882474 ACTCTCTCCGTTCGGTGAAG 59.118 55.000 15.06 15.59 0.00 3.02
4188 8695 1.166129 CTCTCTCCGTTCGGTGAAGA 58.834 55.000 15.06 12.50 0.00 2.87
4189 8696 1.540267 CTCTCTCCGTTCGGTGAAGAA 59.460 52.381 15.06 5.45 0.00 2.52
4190 8697 2.164624 CTCTCTCCGTTCGGTGAAGAAT 59.835 50.000 15.06 0.00 32.25 2.40
4191 8698 2.094700 TCTCTCCGTTCGGTGAAGAATG 60.095 50.000 15.06 5.63 37.00 2.67
4192 8699 1.616865 TCTCCGTTCGGTGAAGAATGT 59.383 47.619 12.51 0.00 35.86 2.71
4193 8700 2.821378 TCTCCGTTCGGTGAAGAATGTA 59.179 45.455 12.51 0.00 35.86 2.29
4194 8701 2.921754 CTCCGTTCGGTGAAGAATGTAC 59.078 50.000 11.04 0.00 35.86 2.90
4195 8702 2.296752 TCCGTTCGGTGAAGAATGTACA 59.703 45.455 11.04 0.00 35.86 2.90
4196 8703 3.056393 TCCGTTCGGTGAAGAATGTACAT 60.056 43.478 1.41 1.41 35.86 2.29
4197 8704 4.158209 TCCGTTCGGTGAAGAATGTACATA 59.842 41.667 9.21 0.00 35.86 2.29
4198 8705 5.047847 CCGTTCGGTGAAGAATGTACATAT 58.952 41.667 9.21 0.00 35.86 1.78
4199 8706 6.039605 TCCGTTCGGTGAAGAATGTACATATA 59.960 38.462 9.21 0.00 35.86 0.86
4200 8707 6.362551 CCGTTCGGTGAAGAATGTACATATAG 59.637 42.308 9.21 0.00 35.86 1.31
4201 8708 7.136772 CGTTCGGTGAAGAATGTACATATAGA 58.863 38.462 9.21 0.00 33.65 1.98
4202 8709 7.646526 CGTTCGGTGAAGAATGTACATATAGAA 59.353 37.037 9.21 4.45 33.65 2.10
4203 8710 9.309516 GTTCGGTGAAGAATGTACATATAGAAA 57.690 33.333 9.21 0.00 32.25 2.52
4229 8736 8.934023 TTTTAGGACAAATTATGGAGTGAAGT 57.066 30.769 0.00 0.00 0.00 3.01
4233 8740 8.934023 AGGACAAATTATGGAGTGAAGTAAAA 57.066 30.769 0.00 0.00 0.00 1.52
4234 8741 9.362151 AGGACAAATTATGGAGTGAAGTAAAAA 57.638 29.630 0.00 0.00 0.00 1.94
4255 8762 2.747396 TGCATTGGAAAGGTGCAATC 57.253 45.000 0.00 0.00 43.28 2.67
4256 8763 1.275856 TGCATTGGAAAGGTGCAATCC 59.724 47.619 0.00 0.00 43.28 3.01
4257 8764 1.275856 GCATTGGAAAGGTGCAATCCA 59.724 47.619 7.49 7.49 43.28 3.41
4258 8765 2.932187 GCATTGGAAAGGTGCAATCCAC 60.932 50.000 10.36 0.00 43.28 4.02
4268 8775 3.772060 GTGCAATCCACCATCTTTCTC 57.228 47.619 0.00 0.00 38.55 2.87
4269 8776 2.424956 GTGCAATCCACCATCTTTCTCC 59.575 50.000 0.00 0.00 38.55 3.71
4270 8777 2.309755 TGCAATCCACCATCTTTCTCCT 59.690 45.455 0.00 0.00 0.00 3.69
4271 8778 2.948315 GCAATCCACCATCTTTCTCCTC 59.052 50.000 0.00 0.00 0.00 3.71
4272 8779 3.371380 GCAATCCACCATCTTTCTCCTCT 60.371 47.826 0.00 0.00 0.00 3.69
4273 8780 4.853007 CAATCCACCATCTTTCTCCTCTT 58.147 43.478 0.00 0.00 0.00 2.85
4274 8781 5.259632 CAATCCACCATCTTTCTCCTCTTT 58.740 41.667 0.00 0.00 0.00 2.52
4275 8782 6.418101 CAATCCACCATCTTTCTCCTCTTTA 58.582 40.000 0.00 0.00 0.00 1.85
4276 8783 6.642733 ATCCACCATCTTTCTCCTCTTTAA 57.357 37.500 0.00 0.00 0.00 1.52
4277 8784 6.642733 TCCACCATCTTTCTCCTCTTTAAT 57.357 37.500 0.00 0.00 0.00 1.40
4278 8785 7.032598 TCCACCATCTTTCTCCTCTTTAATT 57.967 36.000 0.00 0.00 0.00 1.40
4279 8786 8.158025 TCCACCATCTTTCTCCTCTTTAATTA 57.842 34.615 0.00 0.00 0.00 1.40
4280 8787 8.781951 TCCACCATCTTTCTCCTCTTTAATTAT 58.218 33.333 0.00 0.00 0.00 1.28
4281 8788 9.061435 CCACCATCTTTCTCCTCTTTAATTATC 57.939 37.037 0.00 0.00 0.00 1.75
4282 8789 9.061435 CACCATCTTTCTCCTCTTTAATTATCC 57.939 37.037 0.00 0.00 0.00 2.59
4283 8790 8.781951 ACCATCTTTCTCCTCTTTAATTATCCA 58.218 33.333 0.00 0.00 0.00 3.41
4284 8791 9.632638 CCATCTTTCTCCTCTTTAATTATCCAA 57.367 33.333 0.00 0.00 0.00 3.53
4286 8793 9.634021 ATCTTTCTCCTCTTTAATTATCCAACC 57.366 33.333 0.00 0.00 0.00 3.77
4287 8794 8.836735 TCTTTCTCCTCTTTAATTATCCAACCT 58.163 33.333 0.00 0.00 0.00 3.50
4288 8795 9.114952 CTTTCTCCTCTTTAATTATCCAACCTC 57.885 37.037 0.00 0.00 0.00 3.85
4289 8796 7.138054 TCTCCTCTTTAATTATCCAACCTCC 57.862 40.000 0.00 0.00 0.00 4.30
4290 8797 6.676632 TCTCCTCTTTAATTATCCAACCTCCA 59.323 38.462 0.00 0.00 0.00 3.86
4291 8798 7.183839 TCTCCTCTTTAATTATCCAACCTCCAA 59.816 37.037 0.00 0.00 0.00 3.53
4292 8799 7.882755 TCCTCTTTAATTATCCAACCTCCAAT 58.117 34.615 0.00 0.00 0.00 3.16
4293 8800 7.779798 TCCTCTTTAATTATCCAACCTCCAATG 59.220 37.037 0.00 0.00 0.00 2.82
4294 8801 7.779798 CCTCTTTAATTATCCAACCTCCAATGA 59.220 37.037 0.00 0.00 0.00 2.57
4295 8802 8.752005 TCTTTAATTATCCAACCTCCAATGAG 57.248 34.615 0.00 0.00 38.42 2.90
4296 8803 6.959639 TTAATTATCCAACCTCCAATGAGC 57.040 37.500 0.00 0.00 37.29 4.26
4297 8804 4.803329 ATTATCCAACCTCCAATGAGCT 57.197 40.909 0.00 0.00 37.29 4.09
4298 8805 5.912149 ATTATCCAACCTCCAATGAGCTA 57.088 39.130 0.00 0.00 37.29 3.32
4299 8806 5.708736 TTATCCAACCTCCAATGAGCTAA 57.291 39.130 0.00 0.00 37.29 3.09
4300 8807 3.634397 TCCAACCTCCAATGAGCTAAG 57.366 47.619 0.00 0.00 37.29 2.18
4301 8808 2.912956 TCCAACCTCCAATGAGCTAAGT 59.087 45.455 0.00 0.00 37.29 2.24
4302 8809 3.012518 CCAACCTCCAATGAGCTAAGTG 58.987 50.000 0.00 0.00 37.29 3.16
4303 8810 2.409948 ACCTCCAATGAGCTAAGTGC 57.590 50.000 0.00 0.00 43.29 4.40
4304 8811 1.630369 ACCTCCAATGAGCTAAGTGCA 59.370 47.619 0.00 0.00 45.94 4.57
4305 8812 2.240667 ACCTCCAATGAGCTAAGTGCAT 59.759 45.455 0.00 0.00 45.94 3.96
4306 8813 2.617308 CCTCCAATGAGCTAAGTGCATG 59.383 50.000 0.00 0.00 45.94 4.06
4307 8814 3.276857 CTCCAATGAGCTAAGTGCATGT 58.723 45.455 0.00 0.00 45.94 3.21
4308 8815 4.445453 CTCCAATGAGCTAAGTGCATGTA 58.555 43.478 0.00 0.00 45.94 2.29
4309 8816 4.842574 TCCAATGAGCTAAGTGCATGTAA 58.157 39.130 0.00 0.00 45.94 2.41
4310 8817 5.252547 TCCAATGAGCTAAGTGCATGTAAA 58.747 37.500 0.00 0.00 45.94 2.01
4311 8818 5.709631 TCCAATGAGCTAAGTGCATGTAAAA 59.290 36.000 0.00 0.00 45.94 1.52
4312 8819 6.208402 TCCAATGAGCTAAGTGCATGTAAAAA 59.792 34.615 0.00 0.00 45.94 1.94
4313 8820 7.037438 CCAATGAGCTAAGTGCATGTAAAAAT 58.963 34.615 0.00 0.00 45.94 1.82
4314 8821 7.546667 CCAATGAGCTAAGTGCATGTAAAAATT 59.453 33.333 0.00 0.00 45.94 1.82
4315 8822 9.571810 CAATGAGCTAAGTGCATGTAAAAATTA 57.428 29.630 0.00 0.00 45.94 1.40
4317 8824 9.793252 ATGAGCTAAGTGCATGTAAAAATTAAG 57.207 29.630 0.00 0.00 45.94 1.85
4318 8825 9.008965 TGAGCTAAGTGCATGTAAAAATTAAGA 57.991 29.630 0.00 0.00 45.94 2.10
4319 8826 9.840427 GAGCTAAGTGCATGTAAAAATTAAGAA 57.160 29.630 0.00 0.00 45.94 2.52
4320 8827 9.846248 AGCTAAGTGCATGTAAAAATTAAGAAG 57.154 29.630 0.00 0.00 45.94 2.85
4321 8828 9.840427 GCTAAGTGCATGTAAAAATTAAGAAGA 57.160 29.630 0.00 0.00 42.31 2.87
4324 8831 8.177119 AGTGCATGTAAAAATTAAGAAGACCA 57.823 30.769 0.00 0.00 0.00 4.02
4325 8832 8.806146 AGTGCATGTAAAAATTAAGAAGACCAT 58.194 29.630 0.00 0.00 0.00 3.55
4326 8833 8.863049 GTGCATGTAAAAATTAAGAAGACCATG 58.137 33.333 0.00 0.00 0.00 3.66
4327 8834 8.584157 TGCATGTAAAAATTAAGAAGACCATGT 58.416 29.630 0.00 0.00 0.00 3.21
4328 8835 9.076596 GCATGTAAAAATTAAGAAGACCATGTC 57.923 33.333 0.00 0.00 0.00 3.06
4345 8852 9.386122 AGACCATGTCTAGATTATTATTGGTCT 57.614 33.333 20.53 20.53 41.51 3.85
4347 8854 9.784531 ACCATGTCTAGATTATTATTGGTCTTG 57.215 33.333 0.00 0.00 0.00 3.02
4359 8866 9.952030 TTATTATTGGTCTTGATTACTGTGTGA 57.048 29.630 0.00 0.00 0.00 3.58
4361 8868 6.748333 ATTGGTCTTGATTACTGTGTGATG 57.252 37.500 0.00 0.00 0.00 3.07
4362 8869 5.482163 TGGTCTTGATTACTGTGTGATGA 57.518 39.130 0.00 0.00 0.00 2.92
4363 8870 5.482006 TGGTCTTGATTACTGTGTGATGAG 58.518 41.667 0.00 0.00 0.00 2.90
4364 8871 5.245977 TGGTCTTGATTACTGTGTGATGAGA 59.754 40.000 0.00 0.00 0.00 3.27
4365 8872 5.809562 GGTCTTGATTACTGTGTGATGAGAG 59.190 44.000 0.00 0.00 0.00 3.20
4366 8873 6.350528 GGTCTTGATTACTGTGTGATGAGAGA 60.351 42.308 0.00 0.00 0.00 3.10
4367 8874 6.751425 GTCTTGATTACTGTGTGATGAGAGAG 59.249 42.308 0.00 0.00 0.00 3.20
4368 8875 6.660949 TCTTGATTACTGTGTGATGAGAGAGA 59.339 38.462 0.00 0.00 0.00 3.10
4369 8876 6.840780 TGATTACTGTGTGATGAGAGAGAA 57.159 37.500 0.00 0.00 0.00 2.87
4370 8877 7.415592 TGATTACTGTGTGATGAGAGAGAAT 57.584 36.000 0.00 0.00 0.00 2.40
4371 8878 7.845037 TGATTACTGTGTGATGAGAGAGAATT 58.155 34.615 0.00 0.00 0.00 2.17
4372 8879 8.971073 TGATTACTGTGTGATGAGAGAGAATTA 58.029 33.333 0.00 0.00 0.00 1.40
4373 8880 9.979578 GATTACTGTGTGATGAGAGAGAATTAT 57.020 33.333 0.00 0.00 0.00 1.28
4377 8884 9.512588 ACTGTGTGATGAGAGAGAATTATTTTT 57.487 29.630 0.00 0.00 0.00 1.94
4414 8921 9.654663 AAGTGTATTGGAAAGATAGAAGTACAC 57.345 33.333 0.00 0.00 39.53 2.90
4415 8922 9.036980 AGTGTATTGGAAAGATAGAAGTACACT 57.963 33.333 8.14 8.14 42.64 3.55
4416 8923 9.654663 GTGTATTGGAAAGATAGAAGTACACTT 57.345 33.333 0.00 0.00 37.48 3.16
4449 8956 5.959652 AAAATTTGAAGCCAAACGTACAC 57.040 34.783 0.00 0.00 44.16 2.90
4450 8957 4.911514 AATTTGAAGCCAAACGTACACT 57.088 36.364 0.00 0.00 44.16 3.55
4451 8958 4.911514 ATTTGAAGCCAAACGTACACTT 57.088 36.364 0.00 0.00 44.16 3.16
4452 8959 4.705337 TTTGAAGCCAAACGTACACTTT 57.295 36.364 0.00 0.00 37.36 2.66
4453 8960 3.955771 TGAAGCCAAACGTACACTTTC 57.044 42.857 0.00 0.00 0.00 2.62
4454 8961 3.271729 TGAAGCCAAACGTACACTTTCA 58.728 40.909 0.00 0.00 0.00 2.69
4455 8962 3.064271 TGAAGCCAAACGTACACTTTCAC 59.936 43.478 0.00 0.00 0.00 3.18
4456 8963 1.944709 AGCCAAACGTACACTTTCACC 59.055 47.619 0.00 0.00 0.00 4.02
4457 8964 1.333435 GCCAAACGTACACTTTCACCG 60.333 52.381 0.00 0.00 0.00 4.94
4458 8965 1.262151 CCAAACGTACACTTTCACCGG 59.738 52.381 0.00 0.00 0.00 5.28
4459 8966 2.203401 CAAACGTACACTTTCACCGGA 58.797 47.619 9.46 0.00 0.00 5.14
4460 8967 1.856802 AACGTACACTTTCACCGGAC 58.143 50.000 9.46 0.00 0.00 4.79
4461 8968 0.318107 ACGTACACTTTCACCGGACG 60.318 55.000 9.46 6.74 35.10 4.79
4462 8969 1.005294 CGTACACTTTCACCGGACGG 61.005 60.000 9.46 9.56 42.03 4.79
4463 8970 0.314935 GTACACTTTCACCGGACGGA 59.685 55.000 18.80 0.00 38.96 4.69
4464 8971 0.599558 TACACTTTCACCGGACGGAG 59.400 55.000 18.80 10.03 38.96 4.63
4465 8972 1.374252 CACTTTCACCGGACGGAGG 60.374 63.158 18.80 9.15 38.96 4.30
4466 8973 2.264794 CTTTCACCGGACGGAGGG 59.735 66.667 18.80 6.62 38.96 4.30
4467 8974 2.203669 TTTCACCGGACGGAGGGA 60.204 61.111 18.80 8.89 38.96 4.20
4468 8975 2.227089 CTTTCACCGGACGGAGGGAG 62.227 65.000 18.80 7.43 38.96 4.30
4481 8988 1.067212 GGAGGGAGTACGCACATACAG 59.933 57.143 0.49 0.00 0.00 2.74
4503 9011 0.394938 ACCCTATGAACGCACACACA 59.605 50.000 0.00 0.00 0.00 3.72
4537 9045 3.771577 AGTCAATGGAAACGTCTCCTT 57.228 42.857 9.80 0.00 36.35 3.36
4547 9055 3.553828 AACGTCTCCTTCCAAAAGTCA 57.446 42.857 0.00 0.00 0.00 3.41
4548 9056 3.553828 ACGTCTCCTTCCAAAAGTCAA 57.446 42.857 0.00 0.00 0.00 3.18
4549 9057 3.467803 ACGTCTCCTTCCAAAAGTCAAG 58.532 45.455 0.00 0.00 0.00 3.02
4550 9058 3.118371 ACGTCTCCTTCCAAAAGTCAAGT 60.118 43.478 0.00 0.00 0.00 3.16
4551 9059 3.495001 CGTCTCCTTCCAAAAGTCAAGTC 59.505 47.826 0.00 0.00 0.00 3.01
4552 9060 3.815962 GTCTCCTTCCAAAAGTCAAGTCC 59.184 47.826 0.00 0.00 0.00 3.85
4553 9061 3.716872 TCTCCTTCCAAAAGTCAAGTCCT 59.283 43.478 0.00 0.00 0.00 3.85
4633 9141 3.561313 GGACTTGAAACCTGATGGGCTAA 60.561 47.826 0.00 0.00 39.10 3.09
4639 9147 4.665009 TGAAACCTGATGGGCTAAGGATAT 59.335 41.667 0.00 0.00 39.10 1.63
4640 9148 5.849475 TGAAACCTGATGGGCTAAGGATATA 59.151 40.000 0.00 0.00 39.10 0.86
4654 9162 7.309928 GGCTAAGGATATAACTGTCCTCCTAAC 60.310 44.444 0.00 0.00 41.79 2.34
4692 9200 3.562141 TGGTTCACAAACTGGTCAATACG 59.438 43.478 0.00 0.00 35.61 3.06
4759 9267 6.702723 TGATTTGCTTCCTCAAAAATCAAGTG 59.297 34.615 7.10 0.00 42.82 3.16
4768 9276 6.015180 TCCTCAAAAATCAAGTGCTTGCTTAT 60.015 34.615 7.03 0.00 40.24 1.73
4771 9279 6.363088 TCAAAAATCAAGTGCTTGCTTATTCG 59.637 34.615 7.03 0.00 40.24 3.34
4772 9280 5.376854 AAATCAAGTGCTTGCTTATTCGT 57.623 34.783 7.03 0.00 40.24 3.85
4773 9281 5.376854 AATCAAGTGCTTGCTTATTCGTT 57.623 34.783 7.03 0.00 40.24 3.85
4774 9282 4.145876 TCAAGTGCTTGCTTATTCGTTG 57.854 40.909 7.03 0.00 40.24 4.10
4775 9283 3.563808 TCAAGTGCTTGCTTATTCGTTGT 59.436 39.130 7.03 0.00 40.24 3.32
4776 9284 3.813529 AGTGCTTGCTTATTCGTTGTC 57.186 42.857 0.00 0.00 0.00 3.18
4777 9285 2.157668 AGTGCTTGCTTATTCGTTGTCG 59.842 45.455 0.00 0.00 38.55 4.35
4778 9286 2.156891 GTGCTTGCTTATTCGTTGTCGA 59.843 45.455 0.00 0.00 44.66 4.20
4779 9287 3.000041 TGCTTGCTTATTCGTTGTCGAT 59.000 40.909 0.00 0.00 45.65 3.59
4780 9288 3.181521 TGCTTGCTTATTCGTTGTCGATG 60.182 43.478 0.00 0.00 45.65 3.84
4781 9289 3.181520 GCTTGCTTATTCGTTGTCGATGT 60.182 43.478 0.00 0.00 45.65 3.06
4782 9290 3.989705 TGCTTATTCGTTGTCGATGTG 57.010 42.857 0.00 0.00 45.65 3.21
4783 9291 3.580731 TGCTTATTCGTTGTCGATGTGA 58.419 40.909 0.00 0.00 45.65 3.58
4784 9292 4.180817 TGCTTATTCGTTGTCGATGTGAT 58.819 39.130 0.00 0.00 45.65 3.06
4785 9293 4.267690 TGCTTATTCGTTGTCGATGTGATC 59.732 41.667 0.00 0.00 45.65 2.92
4786 9294 4.504461 GCTTATTCGTTGTCGATGTGATCT 59.496 41.667 0.00 0.00 45.65 2.75
4787 9295 5.555256 GCTTATTCGTTGTCGATGTGATCTG 60.555 44.000 0.00 0.00 45.65 2.90
4788 9296 2.278026 TCGTTGTCGATGTGATCTGG 57.722 50.000 0.00 0.00 41.35 3.86
4789 9297 1.544246 TCGTTGTCGATGTGATCTGGT 59.456 47.619 0.00 0.00 41.35 4.00
4790 9298 2.750712 TCGTTGTCGATGTGATCTGGTA 59.249 45.455 0.00 0.00 41.35 3.25
4791 9299 3.380320 TCGTTGTCGATGTGATCTGGTAT 59.620 43.478 0.00 0.00 41.35 2.73
4792 9300 4.112634 CGTTGTCGATGTGATCTGGTATT 58.887 43.478 0.00 0.00 39.71 1.89
4793 9301 4.566759 CGTTGTCGATGTGATCTGGTATTT 59.433 41.667 0.00 0.00 39.71 1.40
4794 9302 5.746721 CGTTGTCGATGTGATCTGGTATTTA 59.253 40.000 0.00 0.00 39.71 1.40
4795 9303 6.291637 CGTTGTCGATGTGATCTGGTATTTAC 60.292 42.308 0.00 0.00 39.71 2.01
4796 9304 6.215495 TGTCGATGTGATCTGGTATTTACA 57.785 37.500 0.00 0.00 0.00 2.41
4797 9305 6.635755 TGTCGATGTGATCTGGTATTTACAA 58.364 36.000 0.00 0.00 0.00 2.41
4798 9306 6.756542 TGTCGATGTGATCTGGTATTTACAAG 59.243 38.462 0.00 0.00 0.00 3.16
4799 9307 5.753438 TCGATGTGATCTGGTATTTACAAGC 59.247 40.000 0.00 0.00 0.00 4.01
4800 9308 5.050091 CGATGTGATCTGGTATTTACAAGCC 60.050 44.000 0.00 0.00 0.00 4.35
4801 9309 5.172687 TGTGATCTGGTATTTACAAGCCA 57.827 39.130 0.00 0.00 0.00 4.75
4802 9310 5.565509 TGTGATCTGGTATTTACAAGCCAA 58.434 37.500 0.00 0.00 0.00 4.52
4803 9311 6.007076 TGTGATCTGGTATTTACAAGCCAAA 58.993 36.000 0.00 0.00 0.00 3.28
4804 9312 6.150976 TGTGATCTGGTATTTACAAGCCAAAG 59.849 38.462 0.00 0.00 0.00 2.77
4805 9313 6.151144 GTGATCTGGTATTTACAAGCCAAAGT 59.849 38.462 0.00 0.00 0.00 2.66
4806 9314 7.335924 GTGATCTGGTATTTACAAGCCAAAGTA 59.664 37.037 0.00 0.00 0.00 2.24
4807 9315 7.335924 TGATCTGGTATTTACAAGCCAAAGTAC 59.664 37.037 0.00 0.00 0.00 2.73
4808 9316 6.535540 TCTGGTATTTACAAGCCAAAGTACA 58.464 36.000 0.00 0.00 0.00 2.90
4809 9317 6.999272 TCTGGTATTTACAAGCCAAAGTACAA 59.001 34.615 0.00 0.00 0.00 2.41
4810 9318 6.972722 TGGTATTTACAAGCCAAAGTACAAC 58.027 36.000 0.00 0.00 0.00 3.32
4811 9319 6.546403 TGGTATTTACAAGCCAAAGTACAACA 59.454 34.615 0.00 0.00 0.00 3.33
4812 9320 7.081976 GGTATTTACAAGCCAAAGTACAACAG 58.918 38.462 0.00 0.00 0.00 3.16
4813 9321 6.952773 ATTTACAAGCCAAAGTACAACAGA 57.047 33.333 0.00 0.00 0.00 3.41
4814 9322 6.371809 TTTACAAGCCAAAGTACAACAGAG 57.628 37.500 0.00 0.00 0.00 3.35
4815 9323 3.886123 ACAAGCCAAAGTACAACAGAGT 58.114 40.909 0.00 0.00 0.00 3.24
4816 9324 4.270008 ACAAGCCAAAGTACAACAGAGTT 58.730 39.130 0.00 0.00 0.00 3.01
4817 9325 4.096382 ACAAGCCAAAGTACAACAGAGTTG 59.904 41.667 8.24 8.24 0.00 3.16
4818 9326 3.886123 AGCCAAAGTACAACAGAGTTGT 58.114 40.909 18.17 18.17 39.87 3.32
4819 9327 5.031066 AGCCAAAGTACAACAGAGTTGTA 57.969 39.130 16.30 16.30 36.23 2.41
4820 9328 5.057149 AGCCAAAGTACAACAGAGTTGTAG 58.943 41.667 19.62 10.90 36.23 2.74
4821 9329 5.054477 GCCAAAGTACAACAGAGTTGTAGA 58.946 41.667 19.62 2.74 36.23 2.59
4822 9330 5.701290 GCCAAAGTACAACAGAGTTGTAGAT 59.299 40.000 19.62 10.97 36.23 1.98
4823 9331 6.128526 GCCAAAGTACAACAGAGTTGTAGATC 60.129 42.308 19.62 10.65 36.23 2.75
4824 9332 6.369065 CCAAAGTACAACAGAGTTGTAGATCC 59.631 42.308 19.62 10.36 36.23 3.36
4825 9333 6.665992 AAGTACAACAGAGTTGTAGATCCA 57.334 37.500 19.62 0.77 36.23 3.41
4826 9334 6.274157 AGTACAACAGAGTTGTAGATCCAG 57.726 41.667 19.62 0.00 36.23 3.86
4827 9335 4.543590 ACAACAGAGTTGTAGATCCAGG 57.456 45.455 13.32 0.00 36.23 4.45
4828 9336 3.261897 ACAACAGAGTTGTAGATCCAGGG 59.738 47.826 13.32 0.00 36.23 4.45
4829 9337 3.474798 ACAGAGTTGTAGATCCAGGGA 57.525 47.619 0.00 0.00 35.25 4.20
4830 9338 3.370104 ACAGAGTTGTAGATCCAGGGAG 58.630 50.000 0.00 0.00 35.25 4.30
4831 9339 3.011821 ACAGAGTTGTAGATCCAGGGAGA 59.988 47.826 0.00 0.00 35.25 3.71
4832 9340 3.636300 CAGAGTTGTAGATCCAGGGAGAG 59.364 52.174 0.00 0.00 0.00 3.20
4833 9341 3.270960 AGAGTTGTAGATCCAGGGAGAGT 59.729 47.826 0.00 0.00 0.00 3.24
4834 9342 3.370104 AGTTGTAGATCCAGGGAGAGTG 58.630 50.000 0.00 0.00 0.00 3.51
4835 9343 3.100671 GTTGTAGATCCAGGGAGAGTGT 58.899 50.000 0.00 0.00 0.00 3.55
4836 9344 3.474798 TGTAGATCCAGGGAGAGTGTT 57.525 47.619 0.00 0.00 0.00 3.32
4837 9345 3.791320 TGTAGATCCAGGGAGAGTGTTT 58.209 45.455 0.00 0.00 0.00 2.83
4838 9346 3.515502 TGTAGATCCAGGGAGAGTGTTTG 59.484 47.826 0.00 0.00 0.00 2.93
4839 9347 1.912043 AGATCCAGGGAGAGTGTTTGG 59.088 52.381 0.00 0.00 0.00 3.28
4840 9348 0.329596 ATCCAGGGAGAGTGTTTGGC 59.670 55.000 0.00 0.00 0.00 4.52
4841 9349 1.303643 CCAGGGAGAGTGTTTGGCC 60.304 63.158 0.00 0.00 0.00 5.36
4842 9350 1.763770 CAGGGAGAGTGTTTGGCCT 59.236 57.895 3.32 0.00 0.00 5.19
4843 9351 0.322008 CAGGGAGAGTGTTTGGCCTC 60.322 60.000 3.32 0.00 0.00 4.70
4844 9352 0.768221 AGGGAGAGTGTTTGGCCTCA 60.768 55.000 3.32 0.00 0.00 3.86
4845 9353 0.329596 GGGAGAGTGTTTGGCCTCAT 59.670 55.000 3.32 0.00 0.00 2.90
4846 9354 1.457346 GGAGAGTGTTTGGCCTCATG 58.543 55.000 3.32 0.00 0.00 3.07
4847 9355 1.271597 GGAGAGTGTTTGGCCTCATGT 60.272 52.381 3.32 0.00 0.00 3.21
4848 9356 2.027192 GGAGAGTGTTTGGCCTCATGTA 60.027 50.000 3.32 0.00 0.00 2.29
4849 9357 3.370953 GGAGAGTGTTTGGCCTCATGTAT 60.371 47.826 3.32 0.00 0.00 2.29
4850 9358 4.141711 GGAGAGTGTTTGGCCTCATGTATA 60.142 45.833 3.32 0.00 0.00 1.47
4851 9359 5.455326 GGAGAGTGTTTGGCCTCATGTATAT 60.455 44.000 3.32 0.00 0.00 0.86
4852 9360 6.239600 GGAGAGTGTTTGGCCTCATGTATATA 60.240 42.308 3.32 0.00 0.00 0.86
4853 9361 7.321717 AGAGTGTTTGGCCTCATGTATATAT 57.678 36.000 3.32 0.00 0.00 0.86
4854 9362 7.164122 AGAGTGTTTGGCCTCATGTATATATG 58.836 38.462 3.32 3.17 0.00 1.78
4855 9363 6.841601 AGTGTTTGGCCTCATGTATATATGT 58.158 36.000 3.32 0.00 0.00 2.29
4856 9364 7.290061 AGTGTTTGGCCTCATGTATATATGTT 58.710 34.615 3.32 0.00 0.00 2.71
4857 9365 8.436778 AGTGTTTGGCCTCATGTATATATGTTA 58.563 33.333 3.32 0.00 0.00 2.41
4858 9366 8.721478 GTGTTTGGCCTCATGTATATATGTTAG 58.279 37.037 3.32 1.24 0.00 2.34
4859 9367 8.655901 TGTTTGGCCTCATGTATATATGTTAGA 58.344 33.333 3.32 0.00 0.00 2.10
4860 9368 9.155975 GTTTGGCCTCATGTATATATGTTAGAG 57.844 37.037 3.32 0.30 0.00 2.43
4861 9369 6.878317 TGGCCTCATGTATATATGTTAGAGC 58.122 40.000 3.32 6.44 0.00 4.09
4862 9370 6.440328 TGGCCTCATGTATATATGTTAGAGCA 59.560 38.462 3.32 0.00 0.00 4.26
4863 9371 7.126268 TGGCCTCATGTATATATGTTAGAGCAT 59.874 37.037 3.32 0.00 0.00 3.79
4864 9372 7.655328 GGCCTCATGTATATATGTTAGAGCATC 59.345 40.741 9.06 0.00 0.00 3.91
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.350368 TTGTGGAAGCTTAGATGTGACA 57.650 40.909 0.00 0.00 0.00 3.58
1 2 5.886960 ATTTGTGGAAGCTTAGATGTGAC 57.113 39.130 0.00 0.00 0.00 3.67
9 10 8.514594 GCTGCATTATATATTTGTGGAAGCTTA 58.485 33.333 0.00 0.00 0.00 3.09
11 12 6.491062 TGCTGCATTATATATTTGTGGAAGCT 59.509 34.615 0.00 0.00 0.00 3.74
13 14 6.805271 GCTGCTGCATTATATATTTGTGGAAG 59.195 38.462 11.11 0.00 39.41 3.46
14 15 6.264970 TGCTGCTGCATTATATATTTGTGGAA 59.735 34.615 14.93 0.00 45.31 3.53
15 16 5.769162 TGCTGCTGCATTATATATTTGTGGA 59.231 36.000 14.93 0.00 45.31 4.02
16 17 6.016213 TGCTGCTGCATTATATATTTGTGG 57.984 37.500 14.93 0.00 45.31 4.17
73 74 3.067180 AGCAGATGTCCACTTTGTTTGTG 59.933 43.478 0.00 0.00 35.39 3.33
74 75 3.290710 AGCAGATGTCCACTTTGTTTGT 58.709 40.909 0.00 0.00 0.00 2.83
75 76 3.996150 AGCAGATGTCCACTTTGTTTG 57.004 42.857 0.00 0.00 0.00 2.93
76 77 5.376625 TCTAAGCAGATGTCCACTTTGTTT 58.623 37.500 0.00 0.00 0.00 2.83
77 78 4.973168 TCTAAGCAGATGTCCACTTTGTT 58.027 39.130 0.00 0.00 0.00 2.83
78 79 4.623932 TCTAAGCAGATGTCCACTTTGT 57.376 40.909 0.00 0.00 0.00 2.83
89 90 8.646004 ACATAGTTATGTCACATCTAAGCAGAT 58.354 33.333 0.00 0.00 42.96 2.90
90 91 8.011844 ACATAGTTATGTCACATCTAAGCAGA 57.988 34.615 0.00 0.00 42.96 4.26
105 106 8.407457 ACACATTTAGACGTGACATAGTTATG 57.593 34.615 0.00 0.00 36.89 1.90
106 107 8.997621 AACACATTTAGACGTGACATAGTTAT 57.002 30.769 0.00 0.00 36.91 1.89
107 108 8.301720 AGAACACATTTAGACGTGACATAGTTA 58.698 33.333 0.00 0.00 36.91 2.24
108 109 7.152645 AGAACACATTTAGACGTGACATAGTT 58.847 34.615 0.00 0.00 36.91 2.24
109 110 6.688578 AGAACACATTTAGACGTGACATAGT 58.311 36.000 0.00 0.00 36.91 2.12
110 111 8.182227 TCTAGAACACATTTAGACGTGACATAG 58.818 37.037 0.00 0.00 36.91 2.23
111 112 7.966753 GTCTAGAACACATTTAGACGTGACATA 59.033 37.037 0.00 0.00 35.46 2.29
112 113 6.807230 GTCTAGAACACATTTAGACGTGACAT 59.193 38.462 0.00 0.00 35.46 3.06
113 114 6.147581 GTCTAGAACACATTTAGACGTGACA 58.852 40.000 0.00 0.00 35.46 3.58
114 115 6.147581 TGTCTAGAACACATTTAGACGTGAC 58.852 40.000 0.00 0.00 43.86 3.67
115 116 6.321848 TGTCTAGAACACATTTAGACGTGA 57.678 37.500 0.00 0.00 43.86 4.35
128 129 5.367945 AGAAAAAGGGTGTGTCTAGAACA 57.632 39.130 0.00 0.00 34.78 3.18
129 130 6.056236 AGAAGAAAAAGGGTGTGTCTAGAAC 58.944 40.000 0.00 0.00 0.00 3.01
130 131 6.248569 AGAAGAAAAAGGGTGTGTCTAGAA 57.751 37.500 0.00 0.00 0.00 2.10
131 132 5.888982 AGAAGAAAAAGGGTGTGTCTAGA 57.111 39.130 0.00 0.00 0.00 2.43
132 133 6.292919 CGAAAGAAGAAAAAGGGTGTGTCTAG 60.293 42.308 0.00 0.00 0.00 2.43
133 134 5.526111 CGAAAGAAGAAAAAGGGTGTGTCTA 59.474 40.000 0.00 0.00 0.00 2.59
134 135 4.335594 CGAAAGAAGAAAAAGGGTGTGTCT 59.664 41.667 0.00 0.00 0.00 3.41
135 136 4.095932 ACGAAAGAAGAAAAAGGGTGTGTC 59.904 41.667 0.00 0.00 0.00 3.67
136 137 4.014406 ACGAAAGAAGAAAAAGGGTGTGT 58.986 39.130 0.00 0.00 0.00 3.72
137 138 4.632538 ACGAAAGAAGAAAAAGGGTGTG 57.367 40.909 0.00 0.00 0.00 3.82
138 139 5.677567 TCTACGAAAGAAGAAAAAGGGTGT 58.322 37.500 0.00 0.00 0.00 4.16
139 140 5.334182 GCTCTACGAAAGAAGAAAAAGGGTG 60.334 44.000 0.00 0.00 32.46 4.61
140 141 4.755629 GCTCTACGAAAGAAGAAAAAGGGT 59.244 41.667 0.00 0.00 32.46 4.34
141 142 4.755123 TGCTCTACGAAAGAAGAAAAAGGG 59.245 41.667 0.00 0.00 32.46 3.95
142 143 5.924475 TGCTCTACGAAAGAAGAAAAAGG 57.076 39.130 0.00 0.00 32.46 3.11
143 144 6.949449 ACTTGCTCTACGAAAGAAGAAAAAG 58.051 36.000 0.00 0.00 32.46 2.27
144 145 6.761714 AGACTTGCTCTACGAAAGAAGAAAAA 59.238 34.615 0.00 0.00 32.46 1.94
145 146 6.281405 AGACTTGCTCTACGAAAGAAGAAAA 58.719 36.000 0.00 0.00 32.46 2.29
146 147 5.844004 AGACTTGCTCTACGAAAGAAGAAA 58.156 37.500 0.00 0.00 32.46 2.52
147 148 5.455056 AGACTTGCTCTACGAAAGAAGAA 57.545 39.130 0.00 0.00 32.46 2.52
148 149 4.378563 CGAGACTTGCTCTACGAAAGAAGA 60.379 45.833 0.00 0.00 41.66 2.87
149 150 3.849145 CGAGACTTGCTCTACGAAAGAAG 59.151 47.826 0.00 0.00 41.66 2.85
150 151 3.366070 CCGAGACTTGCTCTACGAAAGAA 60.366 47.826 0.00 0.00 41.66 2.52
151 152 2.161808 CCGAGACTTGCTCTACGAAAGA 59.838 50.000 0.00 0.00 41.66 2.52
152 153 2.520979 CCGAGACTTGCTCTACGAAAG 58.479 52.381 0.00 0.00 41.66 2.62
153 154 1.201647 CCCGAGACTTGCTCTACGAAA 59.798 52.381 0.00 0.00 41.66 3.46
154 155 0.809385 CCCGAGACTTGCTCTACGAA 59.191 55.000 0.00 0.00 41.66 3.85
155 156 0.035725 TCCCGAGACTTGCTCTACGA 60.036 55.000 0.00 0.00 41.66 3.43
156 157 0.378962 CTCCCGAGACTTGCTCTACG 59.621 60.000 0.00 0.00 41.66 3.51
157 158 0.741915 CCTCCCGAGACTTGCTCTAC 59.258 60.000 0.00 0.00 41.66 2.59
158 159 0.624254 TCCTCCCGAGACTTGCTCTA 59.376 55.000 0.00 0.00 41.66 2.43
159 160 0.682855 CTCCTCCCGAGACTTGCTCT 60.683 60.000 0.00 0.00 41.63 4.09
160 161 1.671901 CCTCCTCCCGAGACTTGCTC 61.672 65.000 0.00 0.00 41.63 4.26
161 162 1.684049 CCTCCTCCCGAGACTTGCT 60.684 63.158 0.00 0.00 41.63 3.91
162 163 1.258445 TTCCTCCTCCCGAGACTTGC 61.258 60.000 0.00 0.00 41.63 4.01
163 164 1.267121 TTTCCTCCTCCCGAGACTTG 58.733 55.000 0.00 0.00 41.63 3.16
164 165 2.025636 TTTTCCTCCTCCCGAGACTT 57.974 50.000 0.00 0.00 41.63 3.01
165 166 1.903183 CTTTTTCCTCCTCCCGAGACT 59.097 52.381 0.00 0.00 41.63 3.24
166 167 1.900486 TCTTTTTCCTCCTCCCGAGAC 59.100 52.381 0.00 0.00 41.63 3.36
167 168 1.900486 GTCTTTTTCCTCCTCCCGAGA 59.100 52.381 0.00 0.00 41.63 4.04
168 169 1.066071 GGTCTTTTTCCTCCTCCCGAG 60.066 57.143 0.00 0.00 38.46 4.63
169 170 0.981943 GGTCTTTTTCCTCCTCCCGA 59.018 55.000 0.00 0.00 0.00 5.14
170 171 0.984995 AGGTCTTTTTCCTCCTCCCG 59.015 55.000 0.00 0.00 0.00 5.14
171 172 3.054287 CCTAAGGTCTTTTTCCTCCTCCC 60.054 52.174 0.00 0.00 33.76 4.30
172 173 3.054287 CCCTAAGGTCTTTTTCCTCCTCC 60.054 52.174 0.00 0.00 33.76 4.30
173 174 3.844804 TCCCTAAGGTCTTTTTCCTCCTC 59.155 47.826 0.00 0.00 33.76 3.71
174 175 3.587951 GTCCCTAAGGTCTTTTTCCTCCT 59.412 47.826 0.00 0.00 33.76 3.69
175 176 3.587951 AGTCCCTAAGGTCTTTTTCCTCC 59.412 47.826 0.00 0.00 33.76 4.30
176 177 4.565861 CCAGTCCCTAAGGTCTTTTTCCTC 60.566 50.000 0.00 0.00 33.76 3.71
177 178 3.330998 CCAGTCCCTAAGGTCTTTTTCCT 59.669 47.826 0.00 0.00 36.81 3.36
178 179 3.687125 CCAGTCCCTAAGGTCTTTTTCC 58.313 50.000 0.00 0.00 27.85 3.13
179 180 3.082548 GCCAGTCCCTAAGGTCTTTTTC 58.917 50.000 0.00 0.00 27.85 2.29
180 181 2.716969 AGCCAGTCCCTAAGGTCTTTTT 59.283 45.455 0.00 0.00 27.85 1.94
181 182 2.040412 CAGCCAGTCCCTAAGGTCTTTT 59.960 50.000 0.00 0.00 27.85 2.27
182 183 1.630878 CAGCCAGTCCCTAAGGTCTTT 59.369 52.381 0.00 0.00 27.85 2.52
183 184 1.203313 TCAGCCAGTCCCTAAGGTCTT 60.203 52.381 0.00 0.00 27.85 3.01
184 185 0.413832 TCAGCCAGTCCCTAAGGTCT 59.586 55.000 0.00 0.00 30.88 3.85
185 186 1.501582 ATCAGCCAGTCCCTAAGGTC 58.498 55.000 0.00 0.00 0.00 3.85
219 220 8.704234 GCTAGAAATCTATCCGTAATTGTTCAG 58.296 37.037 0.00 0.00 0.00 3.02
222 223 7.506114 TGGCTAGAAATCTATCCGTAATTGTT 58.494 34.615 0.00 0.00 37.50 2.83
230 231 4.623167 CGTGATTGGCTAGAAATCTATCCG 59.377 45.833 15.58 10.50 37.50 4.18
235 236 3.873952 GCTTCGTGATTGGCTAGAAATCT 59.126 43.478 15.58 0.00 35.48 2.40
246 247 4.576053 TCTTCCCATAATGCTTCGTGATTG 59.424 41.667 0.00 0.00 0.00 2.67
303 311 4.728860 AGATCCATCCCAGGTGACTTAAAT 59.271 41.667 0.00 0.00 40.21 1.40
308 316 1.008815 TGAGATCCATCCCAGGTGACT 59.991 52.381 0.00 0.00 46.44 3.41
314 322 3.484407 GATTGGTTGAGATCCATCCCAG 58.516 50.000 8.13 0.00 34.42 4.45
424 459 4.585162 GGTTGAGATCTAATCGGAGGAAGA 59.415 45.833 0.00 0.00 0.00 2.87
428 463 4.881019 ATGGTTGAGATCTAATCGGAGG 57.119 45.455 0.00 0.00 0.00 4.30
592 945 2.622977 GGCCATTGATTTGGTGGGTCTA 60.623 50.000 0.00 0.00 39.11 2.59
661 1014 4.092383 GCGTGTGAATTATAACGGTTCAGT 59.908 41.667 0.00 0.00 36.57 3.41
679 1032 3.153919 AGGTCATTTATTTGGTGCGTGT 58.846 40.909 0.00 0.00 0.00 4.49
680 1033 3.848272 AGGTCATTTATTTGGTGCGTG 57.152 42.857 0.00 0.00 0.00 5.34
793 1203 2.202797 CGTGATCTGGCCTCCGTG 60.203 66.667 3.32 0.00 0.00 4.94
834 1244 1.452651 CAATCTGGCCTCCGTGCAT 60.453 57.895 3.32 0.00 0.00 3.96
1099 2040 3.712907 CACATTCCCCGACCCGGT 61.713 66.667 0.00 0.00 46.80 5.28
1152 2093 1.519455 GACATCAGGCCCGAACTCG 60.519 63.158 0.00 0.00 39.44 4.18
1226 2518 8.432805 AGATTTGTACCTCTCTTGAAAGAAAGA 58.567 33.333 0.00 0.00 34.03 2.52
1227 2519 8.614469 AGATTTGTACCTCTCTTGAAAGAAAG 57.386 34.615 0.00 0.00 34.03 2.62
1228 2520 8.432805 AGAGATTTGTACCTCTCTTGAAAGAAA 58.567 33.333 11.80 0.00 44.51 2.52
1229 2521 7.967908 AGAGATTTGTACCTCTCTTGAAAGAA 58.032 34.615 11.80 0.00 44.51 2.52
1230 2522 7.546250 AGAGATTTGTACCTCTCTTGAAAGA 57.454 36.000 11.80 0.00 44.51 2.52
1252 2544 7.012894 AGTCATGTCAAAATTAAAACGGTGAGA 59.987 33.333 0.00 0.00 0.00 3.27
1281 2885 0.622136 TGTCCGTCTCTAGGCTACCA 59.378 55.000 0.00 0.00 0.00 3.25
1443 3048 3.086282 TGAAGACGTGCTGGACATAGTA 58.914 45.455 0.00 0.00 0.00 1.82
1446 3051 2.094700 GTCTGAAGACGTGCTGGACATA 60.095 50.000 0.00 0.00 35.12 2.29
1456 3061 1.614413 GAAGGTCAGGTCTGAAGACGT 59.386 52.381 1.86 2.20 45.65 4.34
1528 3133 0.387367 CAGGTGTCGAAGAGGACGTG 60.387 60.000 0.00 0.00 39.83 4.49
1547 3152 4.838152 TGAAGATGAGGGCGGCGC 62.838 66.667 26.17 26.17 0.00 6.53
1552 3157 1.373570 CGGTTCTTGAAGATGAGGGC 58.626 55.000 0.00 0.00 0.00 5.19
1627 3464 3.052329 TCCATGCCCATCACCACTTATA 58.948 45.455 0.00 0.00 0.00 0.98
1628 3465 1.852309 TCCATGCCCATCACCACTTAT 59.148 47.619 0.00 0.00 0.00 1.73
1629 3466 1.294041 TCCATGCCCATCACCACTTA 58.706 50.000 0.00 0.00 0.00 2.24
1739 3599 1.006571 GTCGTTCTGTTGGAGCCGA 60.007 57.895 0.00 0.00 0.00 5.54
2049 3909 0.782384 CAAGACGGTTGAGTACACGC 59.218 55.000 0.00 0.00 0.00 5.34
2095 3955 2.451132 CGTATCAGGCGAGTACAACAG 58.549 52.381 0.00 0.00 0.00 3.16
2100 3968 3.555917 AATAGCGTATCAGGCGAGTAC 57.444 47.619 0.00 0.00 33.62 2.73
2102 3970 2.623889 AGAAATAGCGTATCAGGCGAGT 59.376 45.455 0.00 0.00 33.62 4.18
2106 3974 2.872245 TGCAAGAAATAGCGTATCAGGC 59.128 45.455 0.00 0.00 0.00 4.85
2113 4160 2.159338 CCTGCATTGCAAGAAATAGCGT 60.159 45.455 13.18 0.00 38.41 5.07
2464 4724 3.555168 GCTCATGAAGTCCGGGTAATAGG 60.555 52.174 0.00 0.00 0.00 2.57
2621 4881 0.687920 TGTTGTTGATGCGGTAGGGA 59.312 50.000 0.00 0.00 0.00 4.20
2642 4902 3.420300 TTAAGGTTACGGTGAATGCCA 57.580 42.857 0.00 0.00 0.00 4.92
3247 5507 1.078848 GGAGAGACAAGCACGCCAT 60.079 57.895 0.00 0.00 0.00 4.40
3688 5954 1.304713 AAGGCCACCTTGCTGATGG 60.305 57.895 5.01 0.00 42.96 3.51
3790 6056 1.270625 TGACGGTGAACACTCCATTCC 60.271 52.381 4.96 0.00 0.00 3.01
4059 8565 5.067023 ACGTAAAAGTCCCTCTCCGTATAAG 59.933 44.000 0.00 0.00 0.00 1.73
4060 8566 4.949856 ACGTAAAAGTCCCTCTCCGTATAA 59.050 41.667 0.00 0.00 0.00 0.98
4061 8567 4.526970 ACGTAAAAGTCCCTCTCCGTATA 58.473 43.478 0.00 0.00 0.00 1.47
4062 8568 3.359950 ACGTAAAAGTCCCTCTCCGTAT 58.640 45.455 0.00 0.00 0.00 3.06
4065 8571 2.288640 ACAACGTAAAAGTCCCTCTCCG 60.289 50.000 0.00 0.00 0.00 4.63
4138 8645 1.196127 CGTCTGCGTCTGTACTGTGTA 59.804 52.381 0.00 0.00 0.00 2.90
4140 8647 2.713303 CGTCTGCGTCTGTACTGTG 58.287 57.895 0.00 0.00 0.00 3.66
4164 8671 3.464907 TCACCGAACGGAGAGAGTATAG 58.535 50.000 20.14 0.00 38.96 1.31
4170 8677 1.612676 TTCTTCACCGAACGGAGAGA 58.387 50.000 20.14 14.80 36.32 3.10
4171 8678 2.263077 CATTCTTCACCGAACGGAGAG 58.737 52.381 20.14 12.97 36.32 3.20
4172 8679 1.616865 ACATTCTTCACCGAACGGAGA 59.383 47.619 20.14 14.39 38.96 3.71
4173 8680 2.080286 ACATTCTTCACCGAACGGAG 57.920 50.000 20.14 12.14 38.96 4.63
4174 8681 2.296752 TGTACATTCTTCACCGAACGGA 59.703 45.455 20.14 0.00 38.96 4.69
4175 8682 2.679450 TGTACATTCTTCACCGAACGG 58.321 47.619 11.83 11.83 42.03 4.44
4176 8683 7.136772 TCTATATGTACATTCTTCACCGAACG 58.863 38.462 14.77 0.00 0.00 3.95
4177 8684 8.867112 TTCTATATGTACATTCTTCACCGAAC 57.133 34.615 14.77 0.00 0.00 3.95
4203 8710 9.533831 ACTTCACTCCATAATTTGTCCTAAAAT 57.466 29.630 0.00 0.00 0.00 1.82
4204 8711 8.934023 ACTTCACTCCATAATTTGTCCTAAAA 57.066 30.769 0.00 0.00 0.00 1.52
4208 8715 8.934023 TTTTACTTCACTCCATAATTTGTCCT 57.066 30.769 0.00 0.00 0.00 3.85
4231 8738 3.818180 TGCACCTTTCCAATGCATTTTT 58.182 36.364 9.83 0.00 44.17 1.94
4232 8739 3.488778 TGCACCTTTCCAATGCATTTT 57.511 38.095 9.83 0.00 44.17 1.82
4237 8744 1.275856 TGGATTGCACCTTTCCAATGC 59.724 47.619 4.78 0.00 39.36 3.56
4238 8745 2.354003 GGTGGATTGCACCTTTCCAATG 60.354 50.000 19.15 0.00 41.05 2.82
4239 8746 1.901833 GGTGGATTGCACCTTTCCAAT 59.098 47.619 19.15 0.00 41.05 3.16
4240 8747 1.337118 GGTGGATTGCACCTTTCCAA 58.663 50.000 19.15 0.00 41.05 3.53
4241 8748 0.187117 TGGTGGATTGCACCTTTCCA 59.813 50.000 25.30 4.74 42.92 3.53
4242 8749 1.478105 GATGGTGGATTGCACCTTTCC 59.522 52.381 25.30 10.06 42.92 3.13
4243 8750 2.450476 AGATGGTGGATTGCACCTTTC 58.550 47.619 25.30 20.75 42.92 2.62
4244 8751 2.610438 AGATGGTGGATTGCACCTTT 57.390 45.000 25.30 14.44 42.92 3.11
4245 8752 2.610438 AAGATGGTGGATTGCACCTT 57.390 45.000 25.30 19.98 42.92 3.50
4246 8753 2.042162 AGAAAGATGGTGGATTGCACCT 59.958 45.455 25.30 12.76 42.92 4.00
4247 8754 2.424956 GAGAAAGATGGTGGATTGCACC 59.575 50.000 19.55 19.55 42.80 5.01
4248 8755 2.424956 GGAGAAAGATGGTGGATTGCAC 59.575 50.000 0.00 0.00 0.00 4.57
4249 8756 2.309755 AGGAGAAAGATGGTGGATTGCA 59.690 45.455 0.00 0.00 0.00 4.08
4250 8757 2.948315 GAGGAGAAAGATGGTGGATTGC 59.052 50.000 0.00 0.00 0.00 3.56
4251 8758 4.500499 AGAGGAGAAAGATGGTGGATTG 57.500 45.455 0.00 0.00 0.00 2.67
4252 8759 5.527026 AAAGAGGAGAAAGATGGTGGATT 57.473 39.130 0.00 0.00 0.00 3.01
4253 8760 6.642733 TTAAAGAGGAGAAAGATGGTGGAT 57.357 37.500 0.00 0.00 0.00 3.41
4254 8761 6.642733 ATTAAAGAGGAGAAAGATGGTGGA 57.357 37.500 0.00 0.00 0.00 4.02
4255 8762 8.986929 ATAATTAAAGAGGAGAAAGATGGTGG 57.013 34.615 0.00 0.00 0.00 4.61
4256 8763 9.061435 GGATAATTAAAGAGGAGAAAGATGGTG 57.939 37.037 0.00 0.00 0.00 4.17
4257 8764 8.781951 TGGATAATTAAAGAGGAGAAAGATGGT 58.218 33.333 0.00 0.00 0.00 3.55
4258 8765 9.632638 TTGGATAATTAAAGAGGAGAAAGATGG 57.367 33.333 0.00 0.00 0.00 3.51
4260 8767 9.634021 GGTTGGATAATTAAAGAGGAGAAAGAT 57.366 33.333 0.00 0.00 0.00 2.40
4261 8768 8.836735 AGGTTGGATAATTAAAGAGGAGAAAGA 58.163 33.333 0.00 0.00 0.00 2.52
4262 8769 9.114952 GAGGTTGGATAATTAAAGAGGAGAAAG 57.885 37.037 0.00 0.00 0.00 2.62
4263 8770 8.053355 GGAGGTTGGATAATTAAAGAGGAGAAA 58.947 37.037 0.00 0.00 0.00 2.52
4264 8771 7.183839 TGGAGGTTGGATAATTAAAGAGGAGAA 59.816 37.037 0.00 0.00 0.00 2.87
4265 8772 6.676632 TGGAGGTTGGATAATTAAAGAGGAGA 59.323 38.462 0.00 0.00 0.00 3.71
4266 8773 6.900194 TGGAGGTTGGATAATTAAAGAGGAG 58.100 40.000 0.00 0.00 0.00 3.69
4267 8774 6.901615 TGGAGGTTGGATAATTAAAGAGGA 57.098 37.500 0.00 0.00 0.00 3.71
4268 8775 7.779798 TCATTGGAGGTTGGATAATTAAAGAGG 59.220 37.037 0.00 0.00 0.00 3.69
4269 8776 8.752005 TCATTGGAGGTTGGATAATTAAAGAG 57.248 34.615 0.00 0.00 0.00 2.85
4270 8777 7.285401 GCTCATTGGAGGTTGGATAATTAAAGA 59.715 37.037 0.00 0.00 41.67 2.52
4271 8778 7.428826 GCTCATTGGAGGTTGGATAATTAAAG 58.571 38.462 0.00 0.00 41.67 1.85
4272 8779 7.346751 GCTCATTGGAGGTTGGATAATTAAA 57.653 36.000 0.00 0.00 41.67 1.52
4273 8780 6.959639 GCTCATTGGAGGTTGGATAATTAA 57.040 37.500 0.00 0.00 41.67 1.40
4285 8792 2.408271 TGCACTTAGCTCATTGGAGG 57.592 50.000 0.00 0.00 45.94 4.30
4286 8793 3.276857 ACATGCACTTAGCTCATTGGAG 58.723 45.455 0.00 0.00 45.94 3.86
4287 8794 3.354948 ACATGCACTTAGCTCATTGGA 57.645 42.857 0.00 0.00 45.94 3.53
4288 8795 5.565592 TTTACATGCACTTAGCTCATTGG 57.434 39.130 0.00 0.00 45.94 3.16
4289 8796 8.470040 AATTTTTACATGCACTTAGCTCATTG 57.530 30.769 0.00 0.00 45.94 2.82
4291 8798 9.793252 CTTAATTTTTACATGCACTTAGCTCAT 57.207 29.630 0.00 0.00 45.94 2.90
4292 8799 9.008965 TCTTAATTTTTACATGCACTTAGCTCA 57.991 29.630 0.00 0.00 45.94 4.26
4293 8800 9.840427 TTCTTAATTTTTACATGCACTTAGCTC 57.160 29.630 0.00 0.00 45.94 4.09
4294 8801 9.846248 CTTCTTAATTTTTACATGCACTTAGCT 57.154 29.630 0.00 0.00 45.94 3.32
4295 8802 9.840427 TCTTCTTAATTTTTACATGCACTTAGC 57.160 29.630 0.00 0.00 45.96 3.09
4298 8805 8.637986 TGGTCTTCTTAATTTTTACATGCACTT 58.362 29.630 0.00 0.00 0.00 3.16
4299 8806 8.177119 TGGTCTTCTTAATTTTTACATGCACT 57.823 30.769 0.00 0.00 0.00 4.40
4300 8807 8.863049 CATGGTCTTCTTAATTTTTACATGCAC 58.137 33.333 0.00 0.00 0.00 4.57
4301 8808 8.584157 ACATGGTCTTCTTAATTTTTACATGCA 58.416 29.630 0.00 0.00 36.40 3.96
4302 8809 8.986477 ACATGGTCTTCTTAATTTTTACATGC 57.014 30.769 0.00 0.00 36.40 4.06
4321 8828 9.784531 CAAGACCAATAATAATCTAGACATGGT 57.215 33.333 0.00 2.24 41.10 3.55
4333 8840 9.952030 TCACACAGTAATCAAGACCAATAATAA 57.048 29.630 0.00 0.00 0.00 1.40
4335 8842 8.896744 CATCACACAGTAATCAAGACCAATAAT 58.103 33.333 0.00 0.00 0.00 1.28
4336 8843 8.100164 TCATCACACAGTAATCAAGACCAATAA 58.900 33.333 0.00 0.00 0.00 1.40
4337 8844 7.619965 TCATCACACAGTAATCAAGACCAATA 58.380 34.615 0.00 0.00 0.00 1.90
4338 8845 6.475504 TCATCACACAGTAATCAAGACCAAT 58.524 36.000 0.00 0.00 0.00 3.16
4339 8846 5.863965 TCATCACACAGTAATCAAGACCAA 58.136 37.500 0.00 0.00 0.00 3.67
4340 8847 5.245977 TCTCATCACACAGTAATCAAGACCA 59.754 40.000 0.00 0.00 0.00 4.02
4341 8848 5.724328 TCTCATCACACAGTAATCAAGACC 58.276 41.667 0.00 0.00 0.00 3.85
4342 8849 6.625362 TCTCTCATCACACAGTAATCAAGAC 58.375 40.000 0.00 0.00 0.00 3.01
4343 8850 6.660949 TCTCTCTCATCACACAGTAATCAAGA 59.339 38.462 0.00 0.00 0.00 3.02
4344 8851 6.861144 TCTCTCTCATCACACAGTAATCAAG 58.139 40.000 0.00 0.00 0.00 3.02
4345 8852 6.840780 TCTCTCTCATCACACAGTAATCAA 57.159 37.500 0.00 0.00 0.00 2.57
4346 8853 6.840780 TTCTCTCTCATCACACAGTAATCA 57.159 37.500 0.00 0.00 0.00 2.57
4347 8854 9.979578 ATAATTCTCTCTCATCACACAGTAATC 57.020 33.333 0.00 0.00 0.00 1.75
4351 8858 9.512588 AAAAATAATTCTCTCTCATCACACAGT 57.487 29.630 0.00 0.00 0.00 3.55
4388 8895 9.654663 GTGTACTTCTATCTTTCCAATACACTT 57.345 33.333 0.00 0.00 37.79 3.16
4389 8896 9.036980 AGTGTACTTCTATCTTTCCAATACACT 57.963 33.333 7.27 7.27 43.18 3.55
4390 8897 9.654663 AAGTGTACTTCTATCTTTCCAATACAC 57.345 33.333 0.00 0.00 39.95 2.90
4426 8933 6.103330 AGTGTACGTTTGGCTTCAAATTTTT 58.897 32.000 0.00 0.00 41.70 1.94
4427 8934 5.656480 AGTGTACGTTTGGCTTCAAATTTT 58.344 33.333 0.00 0.00 41.70 1.82
4428 8935 5.257082 AGTGTACGTTTGGCTTCAAATTT 57.743 34.783 0.00 0.00 41.70 1.82
4429 8936 4.911514 AGTGTACGTTTGGCTTCAAATT 57.088 36.364 0.00 0.00 41.70 1.82
4430 8937 4.911514 AAGTGTACGTTTGGCTTCAAAT 57.088 36.364 0.00 0.00 41.70 2.32
4431 8938 4.156190 TGAAAGTGTACGTTTGGCTTCAAA 59.844 37.500 0.00 0.00 37.97 2.69
4432 8939 3.690139 TGAAAGTGTACGTTTGGCTTCAA 59.310 39.130 0.00 0.00 0.00 2.69
4433 8940 3.064271 GTGAAAGTGTACGTTTGGCTTCA 59.936 43.478 0.00 0.00 0.00 3.02
4434 8941 3.547413 GGTGAAAGTGTACGTTTGGCTTC 60.547 47.826 0.00 0.00 0.00 3.86
4435 8942 2.356695 GGTGAAAGTGTACGTTTGGCTT 59.643 45.455 0.00 0.00 0.00 4.35
4436 8943 1.944709 GGTGAAAGTGTACGTTTGGCT 59.055 47.619 0.00 0.00 0.00 4.75
4437 8944 1.333435 CGGTGAAAGTGTACGTTTGGC 60.333 52.381 0.00 0.00 0.00 4.52
4438 8945 1.262151 CCGGTGAAAGTGTACGTTTGG 59.738 52.381 0.00 0.00 0.00 3.28
4439 8946 2.033492 GTCCGGTGAAAGTGTACGTTTG 60.033 50.000 0.00 0.00 0.00 2.93
4440 8947 2.204237 GTCCGGTGAAAGTGTACGTTT 58.796 47.619 0.00 0.00 0.00 3.60
4441 8948 1.856802 GTCCGGTGAAAGTGTACGTT 58.143 50.000 0.00 0.00 0.00 3.99
4442 8949 0.318107 CGTCCGGTGAAAGTGTACGT 60.318 55.000 0.00 0.00 0.00 3.57
4443 8950 1.005294 CCGTCCGGTGAAAGTGTACG 61.005 60.000 0.00 0.00 0.00 3.67
4444 8951 0.314935 TCCGTCCGGTGAAAGTGTAC 59.685 55.000 0.00 0.00 36.47 2.90
4445 8952 0.599558 CTCCGTCCGGTGAAAGTGTA 59.400 55.000 0.00 0.00 36.47 2.90
4446 8953 1.366366 CTCCGTCCGGTGAAAGTGT 59.634 57.895 0.00 0.00 36.47 3.55
4447 8954 1.374252 CCTCCGTCCGGTGAAAGTG 60.374 63.158 0.00 0.00 36.47 3.16
4448 8955 2.580601 CCCTCCGTCCGGTGAAAGT 61.581 63.158 0.00 0.00 36.47 2.66
4449 8956 2.227089 CTCCCTCCGTCCGGTGAAAG 62.227 65.000 0.00 2.97 36.47 2.62
4450 8957 2.203669 TCCCTCCGTCCGGTGAAA 60.204 61.111 0.00 0.00 36.47 2.69
4451 8958 2.141011 TACTCCCTCCGTCCGGTGAA 62.141 60.000 0.00 0.00 36.47 3.18
4452 8959 2.605607 TACTCCCTCCGTCCGGTGA 61.606 63.158 0.00 0.00 36.47 4.02
4453 8960 2.044650 TACTCCCTCCGTCCGGTG 60.045 66.667 0.00 3.10 36.47 4.94
4454 8961 2.044551 GTACTCCCTCCGTCCGGT 60.045 66.667 0.00 0.00 36.47 5.28
4455 8962 3.207669 CGTACTCCCTCCGTCCGG 61.208 72.222 0.00 0.00 0.00 5.14
4456 8963 3.885521 GCGTACTCCCTCCGTCCG 61.886 72.222 0.00 0.00 0.00 4.79
4457 8964 2.753043 TGCGTACTCCCTCCGTCC 60.753 66.667 0.00 0.00 0.00 4.79
4458 8965 1.664321 ATGTGCGTACTCCCTCCGTC 61.664 60.000 4.97 0.00 0.00 4.79
4459 8966 0.394762 TATGTGCGTACTCCCTCCGT 60.395 55.000 4.97 0.00 0.00 4.69
4460 8967 0.030369 GTATGTGCGTACTCCCTCCG 59.970 60.000 4.97 0.00 0.00 4.63
4461 8968 1.067212 CTGTATGTGCGTACTCCCTCC 59.933 57.143 4.97 0.00 0.00 4.30
4462 8969 1.749634 ACTGTATGTGCGTACTCCCTC 59.250 52.381 4.97 0.00 0.00 4.30
4463 8970 1.749634 GACTGTATGTGCGTACTCCCT 59.250 52.381 4.97 0.00 0.00 4.20
4464 8971 1.475280 TGACTGTATGTGCGTACTCCC 59.525 52.381 4.97 0.00 0.00 4.30
4465 8972 2.527100 GTGACTGTATGTGCGTACTCC 58.473 52.381 4.97 0.00 0.00 3.85
4466 8973 2.527100 GGTGACTGTATGTGCGTACTC 58.473 52.381 4.97 0.00 0.00 2.59
4467 8974 1.203994 GGGTGACTGTATGTGCGTACT 59.796 52.381 4.97 0.00 0.00 2.73
4468 8975 1.203994 AGGGTGACTGTATGTGCGTAC 59.796 52.381 0.00 0.00 0.00 3.67
4481 8988 1.076332 GTGTGCGTTCATAGGGTGAC 58.924 55.000 0.00 0.00 36.32 3.67
4503 9011 4.464951 TCCATTGACTACGAAGGTGTGTAT 59.535 41.667 0.00 0.00 0.00 2.29
4537 9045 5.365619 GTTCACTAGGACTTGACTTTTGGA 58.634 41.667 0.00 0.00 0.00 3.53
4541 9049 3.181469 TGCGTTCACTAGGACTTGACTTT 60.181 43.478 0.00 0.00 0.00 2.66
4542 9050 2.364324 TGCGTTCACTAGGACTTGACTT 59.636 45.455 0.00 0.00 0.00 3.01
4547 9055 3.067106 CAATGTGCGTTCACTAGGACTT 58.933 45.455 0.00 0.00 43.49 3.01
4548 9056 2.688507 CAATGTGCGTTCACTAGGACT 58.311 47.619 0.00 0.00 43.49 3.85
4549 9057 1.128692 GCAATGTGCGTTCACTAGGAC 59.871 52.381 0.00 0.00 43.49 3.85
4550 9058 1.438651 GCAATGTGCGTTCACTAGGA 58.561 50.000 0.00 0.00 43.49 2.94
4551 9059 0.447801 GGCAATGTGCGTTCACTAGG 59.552 55.000 0.00 0.00 46.21 3.02
4552 9060 0.095245 CGGCAATGTGCGTTCACTAG 59.905 55.000 0.00 0.00 46.21 2.57
4553 9061 0.319986 TCGGCAATGTGCGTTCACTA 60.320 50.000 0.00 0.00 46.21 2.74
4639 9147 4.069312 TGGATGGTTAGGAGGACAGTTA 57.931 45.455 0.00 0.00 0.00 2.24
4640 9148 2.915869 TGGATGGTTAGGAGGACAGTT 58.084 47.619 0.00 0.00 0.00 3.16
4672 9180 4.806342 ACGTATTGACCAGTTTGTGAAC 57.194 40.909 0.00 0.00 35.97 3.18
4676 9184 7.629652 AACAAATCAACGTATTGACCAGTTTGT 60.630 33.333 11.29 11.29 46.44 2.83
4722 9230 0.527565 GCAAATCAACCTGCCACGAT 59.472 50.000 0.00 0.00 32.18 3.73
4771 9279 6.533723 TGTAAATACCAGATCACATCGACAAC 59.466 38.462 0.00 0.00 0.00 3.32
4772 9280 6.635755 TGTAAATACCAGATCACATCGACAA 58.364 36.000 0.00 0.00 0.00 3.18
4773 9281 6.215495 TGTAAATACCAGATCACATCGACA 57.785 37.500 0.00 0.00 0.00 4.35
4774 9282 6.292381 GCTTGTAAATACCAGATCACATCGAC 60.292 42.308 0.00 0.00 0.00 4.20
4775 9283 5.753438 GCTTGTAAATACCAGATCACATCGA 59.247 40.000 0.00 0.00 0.00 3.59
4776 9284 5.050091 GGCTTGTAAATACCAGATCACATCG 60.050 44.000 0.00 0.00 0.00 3.84
4777 9285 5.822519 TGGCTTGTAAATACCAGATCACATC 59.177 40.000 0.00 0.00 29.62 3.06
4778 9286 5.754782 TGGCTTGTAAATACCAGATCACAT 58.245 37.500 0.00 0.00 29.62 3.21
4779 9287 5.172687 TGGCTTGTAAATACCAGATCACA 57.827 39.130 0.00 0.00 29.62 3.58
4780 9288 6.151144 ACTTTGGCTTGTAAATACCAGATCAC 59.849 38.462 0.00 0.00 34.01 3.06
4781 9289 6.245408 ACTTTGGCTTGTAAATACCAGATCA 58.755 36.000 0.00 0.00 34.01 2.92
4782 9290 6.759497 ACTTTGGCTTGTAAATACCAGATC 57.241 37.500 0.00 0.00 34.01 2.75
4783 9291 7.172342 TGTACTTTGGCTTGTAAATACCAGAT 58.828 34.615 0.00 0.00 34.01 2.90
4784 9292 6.535540 TGTACTTTGGCTTGTAAATACCAGA 58.464 36.000 0.00 0.00 34.01 3.86
4785 9293 6.811253 TGTACTTTGGCTTGTAAATACCAG 57.189 37.500 0.00 0.00 34.01 4.00
4786 9294 6.546403 TGTTGTACTTTGGCTTGTAAATACCA 59.454 34.615 0.00 0.00 30.92 3.25
4787 9295 6.972722 TGTTGTACTTTGGCTTGTAAATACC 58.027 36.000 0.00 0.00 0.00 2.73
4788 9296 7.867752 TCTGTTGTACTTTGGCTTGTAAATAC 58.132 34.615 0.00 0.00 0.00 1.89
4789 9297 7.717875 ACTCTGTTGTACTTTGGCTTGTAAATA 59.282 33.333 0.00 0.00 0.00 1.40
4790 9298 6.546034 ACTCTGTTGTACTTTGGCTTGTAAAT 59.454 34.615 0.00 0.00 0.00 1.40
4791 9299 5.883673 ACTCTGTTGTACTTTGGCTTGTAAA 59.116 36.000 0.00 0.00 0.00 2.01
4792 9300 5.433526 ACTCTGTTGTACTTTGGCTTGTAA 58.566 37.500 0.00 0.00 0.00 2.41
4793 9301 5.031066 ACTCTGTTGTACTTTGGCTTGTA 57.969 39.130 0.00 0.00 0.00 2.41
4794 9302 3.886123 ACTCTGTTGTACTTTGGCTTGT 58.114 40.909 0.00 0.00 0.00 3.16
4795 9303 4.096382 ACAACTCTGTTGTACTTTGGCTTG 59.904 41.667 13.51 0.00 28.57 4.01
4796 9304 4.270008 ACAACTCTGTTGTACTTTGGCTT 58.730 39.130 13.51 0.00 28.57 4.35
4797 9305 3.886123 ACAACTCTGTTGTACTTTGGCT 58.114 40.909 13.51 0.00 28.57 4.75
4798 9306 5.054477 TCTACAACTCTGTTGTACTTTGGC 58.946 41.667 16.34 0.00 36.96 4.52
4799 9307 6.369065 GGATCTACAACTCTGTTGTACTTTGG 59.631 42.308 16.34 8.93 36.96 3.28
4800 9308 6.929049 TGGATCTACAACTCTGTTGTACTTTG 59.071 38.462 16.34 9.21 36.96 2.77
4801 9309 7.062749 TGGATCTACAACTCTGTTGTACTTT 57.937 36.000 16.34 6.92 36.96 2.66
4802 9310 6.295349 CCTGGATCTACAACTCTGTTGTACTT 60.295 42.308 16.34 8.86 36.96 2.24
4803 9311 5.186021 CCTGGATCTACAACTCTGTTGTACT 59.814 44.000 16.34 9.01 36.96 2.73
4804 9312 5.411781 CCTGGATCTACAACTCTGTTGTAC 58.588 45.833 16.34 9.46 36.96 2.90
4805 9313 4.466370 CCCTGGATCTACAACTCTGTTGTA 59.534 45.833 18.37 18.37 36.96 2.41
4806 9314 3.261897 CCCTGGATCTACAACTCTGTTGT 59.738 47.826 18.13 18.13 36.96 3.32
4807 9315 3.515502 TCCCTGGATCTACAACTCTGTTG 59.484 47.826 8.66 8.66 36.96 3.33
4808 9316 3.772025 CTCCCTGGATCTACAACTCTGTT 59.228 47.826 0.00 0.00 36.96 3.16
4809 9317 3.011821 TCTCCCTGGATCTACAACTCTGT 59.988 47.826 0.00 0.00 39.75 3.41
4810 9318 3.636300 CTCTCCCTGGATCTACAACTCTG 59.364 52.174 0.00 0.00 0.00 3.35
4811 9319 3.270960 ACTCTCCCTGGATCTACAACTCT 59.729 47.826 0.00 0.00 0.00 3.24
4812 9320 3.383185 CACTCTCCCTGGATCTACAACTC 59.617 52.174 0.00 0.00 0.00 3.01
4813 9321 3.245803 ACACTCTCCCTGGATCTACAACT 60.246 47.826 0.00 0.00 0.00 3.16
4814 9322 3.100671 ACACTCTCCCTGGATCTACAAC 58.899 50.000 0.00 0.00 0.00 3.32
4815 9323 3.474798 ACACTCTCCCTGGATCTACAA 57.525 47.619 0.00 0.00 0.00 2.41
4816 9324 3.474798 AACACTCTCCCTGGATCTACA 57.525 47.619 0.00 0.00 0.00 2.74
4817 9325 3.118592 CCAAACACTCTCCCTGGATCTAC 60.119 52.174 0.00 0.00 0.00 2.59
4818 9326 3.107601 CCAAACACTCTCCCTGGATCTA 58.892 50.000 0.00 0.00 0.00 1.98
4819 9327 1.912043 CCAAACACTCTCCCTGGATCT 59.088 52.381 0.00 0.00 0.00 2.75
4820 9328 1.680249 GCCAAACACTCTCCCTGGATC 60.680 57.143 0.00 0.00 0.00 3.36
4821 9329 0.329596 GCCAAACACTCTCCCTGGAT 59.670 55.000 0.00 0.00 0.00 3.41
4822 9330 1.761174 GCCAAACACTCTCCCTGGA 59.239 57.895 0.00 0.00 0.00 3.86
4823 9331 1.303643 GGCCAAACACTCTCCCTGG 60.304 63.158 0.00 0.00 0.00 4.45
4824 9332 0.322008 GAGGCCAAACACTCTCCCTG 60.322 60.000 5.01 0.00 0.00 4.45
4825 9333 0.768221 TGAGGCCAAACACTCTCCCT 60.768 55.000 5.01 0.00 34.84 4.20
4826 9334 0.329596 ATGAGGCCAAACACTCTCCC 59.670 55.000 5.01 0.00 34.84 4.30
4827 9335 1.271597 ACATGAGGCCAAACACTCTCC 60.272 52.381 5.01 0.00 34.84 3.71
4828 9336 2.191128 ACATGAGGCCAAACACTCTC 57.809 50.000 5.01 0.00 34.84 3.20
4829 9337 5.636903 ATATACATGAGGCCAAACACTCT 57.363 39.130 5.01 0.00 34.84 3.24
4830 9338 6.936900 ACATATATACATGAGGCCAAACACTC 59.063 38.462 5.01 0.00 0.00 3.51
4831 9339 6.841601 ACATATATACATGAGGCCAAACACT 58.158 36.000 5.01 0.00 0.00 3.55
4832 9340 7.510549 AACATATATACATGAGGCCAAACAC 57.489 36.000 5.01 0.00 0.00 3.32
4833 9341 8.655901 TCTAACATATATACATGAGGCCAAACA 58.344 33.333 5.01 2.06 0.00 2.83
4834 9342 9.155975 CTCTAACATATATACATGAGGCCAAAC 57.844 37.037 5.01 0.00 0.00 2.93
4835 9343 7.824289 GCTCTAACATATATACATGAGGCCAAA 59.176 37.037 5.01 0.00 0.00 3.28
4836 9344 7.038373 TGCTCTAACATATATACATGAGGCCAA 60.038 37.037 5.01 0.00 0.00 4.52
4837 9345 6.440328 TGCTCTAACATATATACATGAGGCCA 59.560 38.462 5.01 0.00 0.00 5.36
4838 9346 6.878317 TGCTCTAACATATATACATGAGGCC 58.122 40.000 0.00 0.00 0.00 5.19
4839 9347 8.420222 AGATGCTCTAACATATATACATGAGGC 58.580 37.037 0.00 0.00 0.00 4.70
4840 9348 9.964303 GAGATGCTCTAACATATATACATGAGG 57.036 37.037 0.00 0.00 0.00 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.