Multiple sequence alignment - TraesCS2D01G549900

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G549900 chr2D 100.000 4237 0 0 1 4237 625456621 625460857 0.000000e+00 7825
1 TraesCS2D01G549900 chr2A 92.555 3358 129 47 424 3684 756832287 756828954 0.000000e+00 4704
2 TraesCS2D01G549900 chr2A 81.075 465 34 20 3669 4092 756828933 756828482 5.280000e-84 322
3 TraesCS2D01G549900 chr2A 87.407 135 11 1 4098 4232 756828446 756828318 2.640000e-32 150
4 TraesCS2D01G549900 chr2B 89.297 3457 178 102 391 3766 767639956 767643301 0.000000e+00 4157
5 TraesCS2D01G549900 chr2B 81.844 358 31 18 45 380 767499413 767499758 1.940000e-68 270


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G549900 chr2D 625456621 625460857 4236 False 7825.000000 7825 100.000000 1 4237 1 chr2D.!!$F1 4236
1 TraesCS2D01G549900 chr2A 756828318 756832287 3969 True 1725.333333 4704 87.012333 424 4232 3 chr2A.!!$R1 3808
2 TraesCS2D01G549900 chr2B 767639956 767643301 3345 False 4157.000000 4157 89.297000 391 3766 1 chr2B.!!$F2 3375

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
107 108 0.039074 CCTCCCGTCGATGCTATGTC 60.039 60.0 0.00 0.0 0.0 3.06 F
110 111 0.102300 CCCGTCGATGCTATGTCACA 59.898 55.0 0.00 0.0 0.0 3.58 F
209 210 0.250513 GGATCCAACGGCTCTGACTT 59.749 55.0 6.95 0.0 0.0 3.01 F
287 288 0.317160 CACCAACTCACGCAGACCTA 59.683 55.0 0.00 0.0 0.0 3.08 F
1946 2024 0.035439 ACCCAAGCATCCGTTACCAG 60.035 55.0 0.00 0.0 0.0 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1792 1870 1.103398 GGTGGTGCTTCTGCTGTTGT 61.103 55.000 0.00 0.00 40.48 3.32 R
1807 1885 1.293498 CTGAGGGTGAAGACGGTGG 59.707 63.158 0.00 0.00 0.00 4.61 R
1945 2023 5.752036 TGCATGGATAGATTAAGCTAGCT 57.248 39.130 12.68 12.68 0.00 3.32 R
2213 2301 2.357760 TTTACTCCCGTGCGTGGC 60.358 61.111 0.00 0.00 0.00 5.01 R
3790 4012 0.389948 GGAAAGGCGAGTCGACACAT 60.390 55.000 22.73 5.63 37.34 3.21 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
55 56 7.642082 TTTTAAACAACTTACAAGTAGGCCA 57.358 32.000 5.01 0.00 38.57 5.36
56 57 7.642082 TTTAAACAACTTACAAGTAGGCCAA 57.358 32.000 5.01 0.00 38.57 4.52
57 58 5.767816 AAACAACTTACAAGTAGGCCAAG 57.232 39.130 5.01 0.00 38.57 3.61
58 59 4.432980 ACAACTTACAAGTAGGCCAAGT 57.567 40.909 5.01 0.06 38.57 3.16
59 60 4.134563 ACAACTTACAAGTAGGCCAAGTG 58.865 43.478 5.01 0.00 38.57 3.16
60 61 4.141574 ACAACTTACAAGTAGGCCAAGTGA 60.142 41.667 5.01 0.00 38.57 3.41
61 62 4.699925 ACTTACAAGTAGGCCAAGTGAA 57.300 40.909 5.01 0.00 37.52 3.18
62 63 5.043737 ACTTACAAGTAGGCCAAGTGAAA 57.956 39.130 5.01 0.00 37.52 2.69
63 64 5.442391 ACTTACAAGTAGGCCAAGTGAAAA 58.558 37.500 5.01 0.00 37.52 2.29
64 65 5.298527 ACTTACAAGTAGGCCAAGTGAAAAC 59.701 40.000 5.01 0.00 37.52 2.43
65 66 3.898482 ACAAGTAGGCCAAGTGAAAACT 58.102 40.909 5.01 0.00 0.00 2.66
66 67 5.043737 ACAAGTAGGCCAAGTGAAAACTA 57.956 39.130 5.01 0.00 0.00 2.24
67 68 5.442391 ACAAGTAGGCCAAGTGAAAACTAA 58.558 37.500 5.01 0.00 0.00 2.24
68 69 5.298527 ACAAGTAGGCCAAGTGAAAACTAAC 59.701 40.000 5.01 0.00 0.00 2.34
69 70 5.306114 AGTAGGCCAAGTGAAAACTAACT 57.694 39.130 5.01 0.00 0.00 2.24
70 71 5.306394 AGTAGGCCAAGTGAAAACTAACTC 58.694 41.667 5.01 0.00 0.00 3.01
71 72 4.439253 AGGCCAAGTGAAAACTAACTCT 57.561 40.909 5.01 0.00 0.00 3.24
72 73 4.793201 AGGCCAAGTGAAAACTAACTCTT 58.207 39.130 5.01 0.00 0.00 2.85
73 74 4.822350 AGGCCAAGTGAAAACTAACTCTTC 59.178 41.667 5.01 0.00 0.00 2.87
74 75 4.023107 GGCCAAGTGAAAACTAACTCTTCC 60.023 45.833 0.00 0.00 0.00 3.46
75 76 4.023107 GCCAAGTGAAAACTAACTCTTCCC 60.023 45.833 0.00 0.00 0.00 3.97
76 77 5.130350 CCAAGTGAAAACTAACTCTTCCCA 58.870 41.667 0.00 0.00 0.00 4.37
77 78 5.770162 CCAAGTGAAAACTAACTCTTCCCAT 59.230 40.000 0.00 0.00 0.00 4.00
78 79 6.265422 CCAAGTGAAAACTAACTCTTCCCATT 59.735 38.462 0.00 0.00 0.00 3.16
79 80 6.884280 AGTGAAAACTAACTCTTCCCATTG 57.116 37.500 0.00 0.00 0.00 2.82
80 81 6.601332 AGTGAAAACTAACTCTTCCCATTGA 58.399 36.000 0.00 0.00 0.00 2.57
81 82 6.712547 AGTGAAAACTAACTCTTCCCATTGAG 59.287 38.462 0.00 0.00 36.47 3.02
82 83 6.710744 GTGAAAACTAACTCTTCCCATTGAGA 59.289 38.462 0.00 0.00 34.65 3.27
83 84 7.228706 GTGAAAACTAACTCTTCCCATTGAGAA 59.771 37.037 0.00 0.00 34.65 2.87
84 85 7.445402 TGAAAACTAACTCTTCCCATTGAGAAG 59.555 37.037 1.70 1.70 41.76 2.85
85 86 6.688073 AACTAACTCTTCCCATTGAGAAGA 57.312 37.500 9.87 9.87 45.72 2.87
86 87 6.688073 ACTAACTCTTCCCATTGAGAAGAA 57.312 37.500 11.22 0.00 46.77 2.52
87 88 7.264294 ACTAACTCTTCCCATTGAGAAGAAT 57.736 36.000 11.22 0.00 46.77 2.40
88 89 7.334858 ACTAACTCTTCCCATTGAGAAGAATC 58.665 38.462 11.22 0.00 46.77 2.52
89 90 5.109500 ACTCTTCCCATTGAGAAGAATCC 57.891 43.478 11.22 0.00 46.77 3.01
90 91 4.787534 ACTCTTCCCATTGAGAAGAATCCT 59.212 41.667 11.22 0.00 46.77 3.24
91 92 5.104569 ACTCTTCCCATTGAGAAGAATCCTC 60.105 44.000 11.22 0.00 46.77 3.71
92 93 4.164988 TCTTCCCATTGAGAAGAATCCTCC 59.835 45.833 8.05 0.00 45.11 4.30
93 94 2.780010 TCCCATTGAGAAGAATCCTCCC 59.220 50.000 0.00 0.00 0.00 4.30
94 95 2.486191 CCCATTGAGAAGAATCCTCCCG 60.486 54.545 0.00 0.00 0.00 5.14
95 96 2.171448 CCATTGAGAAGAATCCTCCCGT 59.829 50.000 0.00 0.00 0.00 5.28
96 97 3.462021 CATTGAGAAGAATCCTCCCGTC 58.538 50.000 0.00 0.00 0.00 4.79
97 98 1.103803 TGAGAAGAATCCTCCCGTCG 58.896 55.000 0.00 0.00 0.00 5.12
98 99 1.340697 TGAGAAGAATCCTCCCGTCGA 60.341 52.381 0.00 0.00 0.00 4.20
99 100 1.957877 GAGAAGAATCCTCCCGTCGAT 59.042 52.381 0.00 0.00 0.00 3.59
100 101 1.683917 AGAAGAATCCTCCCGTCGATG 59.316 52.381 0.00 0.00 0.00 3.84
101 102 0.105039 AAGAATCCTCCCGTCGATGC 59.895 55.000 0.00 0.00 0.00 3.91
102 103 0.757188 AGAATCCTCCCGTCGATGCT 60.757 55.000 0.00 0.00 0.00 3.79
103 104 0.959553 GAATCCTCCCGTCGATGCTA 59.040 55.000 0.00 0.00 0.00 3.49
104 105 1.546476 GAATCCTCCCGTCGATGCTAT 59.454 52.381 0.00 0.00 0.00 2.97
105 106 0.891373 ATCCTCCCGTCGATGCTATG 59.109 55.000 0.00 0.00 0.00 2.23
106 107 0.467474 TCCTCCCGTCGATGCTATGT 60.467 55.000 0.00 0.00 0.00 2.29
107 108 0.039074 CCTCCCGTCGATGCTATGTC 60.039 60.000 0.00 0.00 0.00 3.06
108 109 0.668535 CTCCCGTCGATGCTATGTCA 59.331 55.000 0.00 0.00 0.00 3.58
109 110 0.384309 TCCCGTCGATGCTATGTCAC 59.616 55.000 0.00 0.00 0.00 3.67
110 111 0.102300 CCCGTCGATGCTATGTCACA 59.898 55.000 0.00 0.00 0.00 3.58
111 112 1.470805 CCCGTCGATGCTATGTCACAA 60.471 52.381 0.00 0.00 0.00 3.33
112 113 2.267426 CCGTCGATGCTATGTCACAAA 58.733 47.619 0.00 0.00 0.00 2.83
113 114 2.029244 CCGTCGATGCTATGTCACAAAC 59.971 50.000 0.00 0.00 0.00 2.93
114 115 2.284457 CGTCGATGCTATGTCACAAACG 60.284 50.000 0.00 0.00 0.00 3.60
115 116 2.666508 GTCGATGCTATGTCACAAACGT 59.333 45.455 0.00 0.00 0.00 3.99
116 117 3.855379 GTCGATGCTATGTCACAAACGTA 59.145 43.478 0.00 0.00 0.00 3.57
117 118 4.027621 GTCGATGCTATGTCACAAACGTAG 60.028 45.833 0.00 0.99 46.28 3.51
133 134 3.968649 ACGTAGTTAAACAAGAGTCGCA 58.031 40.909 0.00 0.00 37.78 5.10
134 135 4.553323 ACGTAGTTAAACAAGAGTCGCAT 58.447 39.130 0.00 0.00 37.78 4.73
135 136 5.702865 ACGTAGTTAAACAAGAGTCGCATA 58.297 37.500 0.00 0.00 37.78 3.14
136 137 6.151691 ACGTAGTTAAACAAGAGTCGCATAA 58.848 36.000 0.00 0.00 37.78 1.90
137 138 6.307318 ACGTAGTTAAACAAGAGTCGCATAAG 59.693 38.462 0.00 0.00 37.78 1.73
138 139 6.525628 CGTAGTTAAACAAGAGTCGCATAAGA 59.474 38.462 0.00 0.00 0.00 2.10
139 140 7.061441 CGTAGTTAAACAAGAGTCGCATAAGAA 59.939 37.037 0.00 0.00 0.00 2.52
140 141 7.724305 AGTTAAACAAGAGTCGCATAAGAAA 57.276 32.000 0.00 0.00 0.00 2.52
141 142 8.149973 AGTTAAACAAGAGTCGCATAAGAAAA 57.850 30.769 0.00 0.00 0.00 2.29
142 143 8.283291 AGTTAAACAAGAGTCGCATAAGAAAAG 58.717 33.333 0.00 0.00 0.00 2.27
143 144 5.613358 AACAAGAGTCGCATAAGAAAAGG 57.387 39.130 0.00 0.00 0.00 3.11
144 145 4.894784 ACAAGAGTCGCATAAGAAAAGGA 58.105 39.130 0.00 0.00 0.00 3.36
145 146 4.932200 ACAAGAGTCGCATAAGAAAAGGAG 59.068 41.667 0.00 0.00 0.00 3.69
146 147 3.526534 AGAGTCGCATAAGAAAAGGAGC 58.473 45.455 0.00 0.00 0.00 4.70
147 148 2.609916 GAGTCGCATAAGAAAAGGAGCC 59.390 50.000 0.00 0.00 0.00 4.70
148 149 2.027192 AGTCGCATAAGAAAAGGAGCCA 60.027 45.455 0.00 0.00 0.00 4.75
149 150 2.945668 GTCGCATAAGAAAAGGAGCCAT 59.054 45.455 0.00 0.00 0.00 4.40
150 151 4.127171 GTCGCATAAGAAAAGGAGCCATA 58.873 43.478 0.00 0.00 0.00 2.74
151 152 4.757149 GTCGCATAAGAAAAGGAGCCATAT 59.243 41.667 0.00 0.00 0.00 1.78
152 153 5.932303 GTCGCATAAGAAAAGGAGCCATATA 59.068 40.000 0.00 0.00 0.00 0.86
153 154 6.595716 GTCGCATAAGAAAAGGAGCCATATAT 59.404 38.462 0.00 0.00 0.00 0.86
154 155 7.119846 GTCGCATAAGAAAAGGAGCCATATATT 59.880 37.037 0.00 0.00 0.00 1.28
155 156 7.665559 TCGCATAAGAAAAGGAGCCATATATTT 59.334 33.333 0.00 0.00 0.00 1.40
156 157 7.752239 CGCATAAGAAAAGGAGCCATATATTTG 59.248 37.037 0.00 0.00 0.00 2.32
157 158 8.579863 GCATAAGAAAAGGAGCCATATATTTGT 58.420 33.333 0.00 0.00 0.00 2.83
159 160 9.866655 ATAAGAAAAGGAGCCATATATTTGTCA 57.133 29.630 0.00 0.00 0.00 3.58
160 161 8.593945 AAGAAAAGGAGCCATATATTTGTCAA 57.406 30.769 0.00 0.00 0.00 3.18
161 162 8.773033 AGAAAAGGAGCCATATATTTGTCAAT 57.227 30.769 0.00 0.00 0.00 2.57
162 163 9.205513 AGAAAAGGAGCCATATATTTGTCAATT 57.794 29.630 0.00 0.00 0.00 2.32
163 164 9.252962 GAAAAGGAGCCATATATTTGTCAATTG 57.747 33.333 0.00 0.00 0.00 2.32
164 165 6.336842 AGGAGCCATATATTTGTCAATTGC 57.663 37.500 0.00 0.00 0.00 3.56
165 166 5.244626 AGGAGCCATATATTTGTCAATTGCC 59.755 40.000 0.00 0.00 0.00 4.52
166 167 5.244626 GGAGCCATATATTTGTCAATTGCCT 59.755 40.000 0.00 0.00 0.00 4.75
167 168 6.092955 AGCCATATATTTGTCAATTGCCTG 57.907 37.500 0.00 0.00 0.00 4.85
168 169 5.011329 AGCCATATATTTGTCAATTGCCTGG 59.989 40.000 0.00 0.00 0.00 4.45
169 170 5.221501 GCCATATATTTGTCAATTGCCTGGT 60.222 40.000 0.00 0.00 0.00 4.00
170 171 6.015519 GCCATATATTTGTCAATTGCCTGGTA 60.016 38.462 0.00 0.00 0.00 3.25
171 172 7.471260 GCCATATATTTGTCAATTGCCTGGTAA 60.471 37.037 0.00 0.00 0.00 2.85
172 173 8.420222 CCATATATTTGTCAATTGCCTGGTAAA 58.580 33.333 0.16 0.00 0.00 2.01
173 174 9.814899 CATATATTTGTCAATTGCCTGGTAAAA 57.185 29.630 0.16 0.00 0.00 1.52
174 175 9.816354 ATATATTTGTCAATTGCCTGGTAAAAC 57.184 29.630 0.16 1.67 0.00 2.43
175 176 3.634568 TGTCAATTGCCTGGTAAAACG 57.365 42.857 0.16 0.00 0.00 3.60
176 177 2.952978 TGTCAATTGCCTGGTAAAACGT 59.047 40.909 0.16 0.00 0.00 3.99
177 178 3.381908 TGTCAATTGCCTGGTAAAACGTT 59.618 39.130 0.16 0.00 0.00 3.99
178 179 3.733727 GTCAATTGCCTGGTAAAACGTTG 59.266 43.478 0.00 1.98 0.00 4.10
179 180 3.381908 TCAATTGCCTGGTAAAACGTTGT 59.618 39.130 0.00 0.00 0.00 3.32
180 181 4.116238 CAATTGCCTGGTAAAACGTTGTT 58.884 39.130 0.00 1.17 0.00 2.83
181 182 5.067413 TCAATTGCCTGGTAAAACGTTGTTA 59.933 36.000 0.00 0.15 0.00 2.41
182 183 4.555348 TTGCCTGGTAAAACGTTGTTAG 57.445 40.909 0.00 0.00 0.00 2.34
183 184 3.543665 TGCCTGGTAAAACGTTGTTAGT 58.456 40.909 0.00 0.00 0.00 2.24
184 185 3.560896 TGCCTGGTAAAACGTTGTTAGTC 59.439 43.478 0.00 0.36 0.00 2.59
185 186 3.363280 GCCTGGTAAAACGTTGTTAGTCG 60.363 47.826 0.00 0.00 0.00 4.18
186 187 3.184986 CCTGGTAAAACGTTGTTAGTCGG 59.815 47.826 0.00 4.17 0.00 4.79
187 188 3.791245 TGGTAAAACGTTGTTAGTCGGT 58.209 40.909 0.00 0.00 0.00 4.69
188 189 4.187694 TGGTAAAACGTTGTTAGTCGGTT 58.812 39.130 0.00 0.00 38.64 4.44
189 190 4.269844 TGGTAAAACGTTGTTAGTCGGTTC 59.730 41.667 0.00 0.00 35.92 3.62
190 191 3.574216 AAAACGTTGTTAGTCGGTTCG 57.426 42.857 0.00 0.00 35.92 3.95
191 192 1.490621 AACGTTGTTAGTCGGTTCGG 58.509 50.000 0.00 0.00 0.00 4.30
192 193 0.667993 ACGTTGTTAGTCGGTTCGGA 59.332 50.000 0.00 0.00 0.00 4.55
193 194 1.270550 ACGTTGTTAGTCGGTTCGGAT 59.729 47.619 0.00 0.00 0.00 4.18
194 195 1.916000 CGTTGTTAGTCGGTTCGGATC 59.084 52.381 0.00 0.00 0.00 3.36
195 196 2.265683 GTTGTTAGTCGGTTCGGATCC 58.734 52.381 0.00 0.00 0.00 3.36
196 197 1.548081 TGTTAGTCGGTTCGGATCCA 58.452 50.000 13.41 0.00 0.00 3.41
197 198 1.894466 TGTTAGTCGGTTCGGATCCAA 59.106 47.619 13.41 2.44 0.00 3.53
198 199 2.265683 GTTAGTCGGTTCGGATCCAAC 58.734 52.381 13.41 14.38 0.00 3.77
199 200 0.452987 TAGTCGGTTCGGATCCAACG 59.547 55.000 13.41 7.97 0.00 4.10
200 201 1.808390 GTCGGTTCGGATCCAACGG 60.808 63.158 13.41 17.39 0.00 4.44
201 202 3.192922 CGGTTCGGATCCAACGGC 61.193 66.667 13.41 3.51 0.00 5.68
202 203 2.267961 GGTTCGGATCCAACGGCT 59.732 61.111 13.41 0.00 0.00 5.52
203 204 1.814169 GGTTCGGATCCAACGGCTC 60.814 63.158 13.41 0.00 0.00 4.70
204 205 1.218316 GTTCGGATCCAACGGCTCT 59.782 57.895 13.41 0.00 0.00 4.09
205 206 1.084370 GTTCGGATCCAACGGCTCTG 61.084 60.000 13.41 0.00 0.00 3.35
206 207 1.254975 TTCGGATCCAACGGCTCTGA 61.255 55.000 13.41 0.00 32.23 3.27
207 208 1.519455 CGGATCCAACGGCTCTGAC 60.519 63.158 13.41 0.00 0.00 3.51
208 209 1.901085 GGATCCAACGGCTCTGACT 59.099 57.895 6.95 0.00 0.00 3.41
209 210 0.250513 GGATCCAACGGCTCTGACTT 59.749 55.000 6.95 0.00 0.00 3.01
210 211 1.646189 GATCCAACGGCTCTGACTTC 58.354 55.000 0.00 0.00 0.00 3.01
211 212 1.205893 GATCCAACGGCTCTGACTTCT 59.794 52.381 0.00 0.00 0.00 2.85
212 213 1.048601 TCCAACGGCTCTGACTTCTT 58.951 50.000 0.00 0.00 0.00 2.52
213 214 1.000955 TCCAACGGCTCTGACTTCTTC 59.999 52.381 0.00 0.00 0.00 2.87
214 215 1.001406 CCAACGGCTCTGACTTCTTCT 59.999 52.381 0.00 0.00 0.00 2.85
215 216 2.548920 CCAACGGCTCTGACTTCTTCTT 60.549 50.000 0.00 0.00 0.00 2.52
216 217 2.734079 CAACGGCTCTGACTTCTTCTTC 59.266 50.000 0.00 0.00 0.00 2.87
217 218 1.273886 ACGGCTCTGACTTCTTCTTCC 59.726 52.381 0.00 0.00 0.00 3.46
218 219 1.548269 CGGCTCTGACTTCTTCTTCCT 59.452 52.381 0.00 0.00 0.00 3.36
219 220 2.416701 CGGCTCTGACTTCTTCTTCCTC 60.417 54.545 0.00 0.00 0.00 3.71
220 221 2.564947 GGCTCTGACTTCTTCTTCCTCA 59.435 50.000 0.00 0.00 0.00 3.86
221 222 3.197549 GGCTCTGACTTCTTCTTCCTCAT 59.802 47.826 0.00 0.00 0.00 2.90
222 223 4.432712 GCTCTGACTTCTTCTTCCTCATC 58.567 47.826 0.00 0.00 0.00 2.92
223 224 4.160252 GCTCTGACTTCTTCTTCCTCATCT 59.840 45.833 0.00 0.00 0.00 2.90
224 225 5.653507 CTCTGACTTCTTCTTCCTCATCTG 58.346 45.833 0.00 0.00 0.00 2.90
225 226 4.465660 TCTGACTTCTTCTTCCTCATCTGG 59.534 45.833 0.00 0.00 0.00 3.86
226 227 4.420206 TGACTTCTTCTTCCTCATCTGGA 58.580 43.478 0.00 0.00 0.00 3.86
227 228 5.028802 TGACTTCTTCTTCCTCATCTGGAT 58.971 41.667 0.00 0.00 35.83 3.41
228 229 5.105023 TGACTTCTTCTTCCTCATCTGGATG 60.105 44.000 4.36 4.36 40.09 3.51
229 230 5.028802 ACTTCTTCTTCCTCATCTGGATGA 58.971 41.667 12.01 12.01 44.83 2.92
230 231 5.666718 ACTTCTTCTTCCTCATCTGGATGAT 59.333 40.000 12.82 0.00 45.74 2.45
240 241 4.088056 CATCTGGATGATGCCTTCTTCT 57.912 45.455 4.72 0.00 44.96 2.85
241 242 4.462133 CATCTGGATGATGCCTTCTTCTT 58.538 43.478 4.72 0.00 44.96 2.52
242 243 4.148128 TCTGGATGATGCCTTCTTCTTC 57.852 45.455 0.00 0.00 0.00 2.87
243 244 3.779183 TCTGGATGATGCCTTCTTCTTCT 59.221 43.478 0.00 0.00 0.00 2.85
244 245 4.226846 TCTGGATGATGCCTTCTTCTTCTT 59.773 41.667 0.00 0.00 0.00 2.52
245 246 4.521146 TGGATGATGCCTTCTTCTTCTTC 58.479 43.478 0.00 0.00 0.00 2.87
246 247 4.226846 TGGATGATGCCTTCTTCTTCTTCT 59.773 41.667 0.00 0.00 0.00 2.85
247 248 5.192176 GGATGATGCCTTCTTCTTCTTCTT 58.808 41.667 0.00 0.00 0.00 2.52
248 249 5.296531 GGATGATGCCTTCTTCTTCTTCTTC 59.703 44.000 0.00 0.00 0.00 2.87
249 250 5.495926 TGATGCCTTCTTCTTCTTCTTCT 57.504 39.130 0.00 0.00 0.00 2.85
250 251 5.874093 TGATGCCTTCTTCTTCTTCTTCTT 58.126 37.500 0.00 0.00 0.00 2.52
251 252 5.936956 TGATGCCTTCTTCTTCTTCTTCTTC 59.063 40.000 0.00 0.00 0.00 2.87
252 253 5.559148 TGCCTTCTTCTTCTTCTTCTTCT 57.441 39.130 0.00 0.00 0.00 2.85
253 254 5.934781 TGCCTTCTTCTTCTTCTTCTTCTT 58.065 37.500 0.00 0.00 0.00 2.52
254 255 5.994668 TGCCTTCTTCTTCTTCTTCTTCTTC 59.005 40.000 0.00 0.00 0.00 2.87
255 256 6.183361 TGCCTTCTTCTTCTTCTTCTTCTTCT 60.183 38.462 0.00 0.00 0.00 2.85
256 257 6.710295 GCCTTCTTCTTCTTCTTCTTCTTCTT 59.290 38.462 0.00 0.00 0.00 2.52
257 258 7.095229 GCCTTCTTCTTCTTCTTCTTCTTCTTC 60.095 40.741 0.00 0.00 0.00 2.87
258 259 7.387673 CCTTCTTCTTCTTCTTCTTCTTCTTCC 59.612 40.741 0.00 0.00 0.00 3.46
259 260 7.610580 TCTTCTTCTTCTTCTTCTTCTTCCT 57.389 36.000 0.00 0.00 0.00 3.36
260 261 7.666623 TCTTCTTCTTCTTCTTCTTCTTCCTC 58.333 38.462 0.00 0.00 0.00 3.71
261 262 7.508977 TCTTCTTCTTCTTCTTCTTCTTCCTCT 59.491 37.037 0.00 0.00 0.00 3.69
262 263 6.991938 TCTTCTTCTTCTTCTTCTTCCTCTG 58.008 40.000 0.00 0.00 0.00 3.35
263 264 5.736951 TCTTCTTCTTCTTCTTCCTCTGG 57.263 43.478 0.00 0.00 0.00 3.86
264 265 3.971245 TCTTCTTCTTCTTCCTCTGGC 57.029 47.619 0.00 0.00 0.00 4.85
265 266 3.515562 TCTTCTTCTTCTTCCTCTGGCT 58.484 45.455 0.00 0.00 0.00 4.75
266 267 3.260380 TCTTCTTCTTCTTCCTCTGGCTG 59.740 47.826 0.00 0.00 0.00 4.85
267 268 1.277557 TCTTCTTCTTCCTCTGGCTGC 59.722 52.381 0.00 0.00 0.00 5.25
268 269 0.326264 TTCTTCTTCCTCTGGCTGCC 59.674 55.000 12.87 12.87 0.00 4.85
269 270 0.837691 TCTTCTTCCTCTGGCTGCCA 60.838 55.000 21.96 21.96 0.00 4.92
270 271 0.676151 CTTCTTCCTCTGGCTGCCAC 60.676 60.000 19.30 0.00 0.00 5.01
271 272 2.045536 CTTCCTCTGGCTGCCACC 60.046 66.667 19.30 0.00 0.00 4.61
272 273 2.853542 TTCCTCTGGCTGCCACCA 60.854 61.111 19.30 6.33 38.29 4.17
273 274 2.416107 CTTCCTCTGGCTGCCACCAA 62.416 60.000 19.30 5.36 39.86 3.67
274 275 2.674380 CCTCTGGCTGCCACCAAC 60.674 66.667 19.30 0.00 39.86 3.77
275 276 2.433446 CTCTGGCTGCCACCAACT 59.567 61.111 19.30 0.00 39.86 3.16
276 277 1.673665 CTCTGGCTGCCACCAACTC 60.674 63.158 19.30 0.00 39.86 3.01
277 278 2.113774 CTGGCTGCCACCAACTCA 59.886 61.111 19.30 0.00 39.86 3.41
278 279 2.203337 TGGCTGCCACCAACTCAC 60.203 61.111 19.30 0.00 36.55 3.51
279 280 3.357079 GGCTGCCACCAACTCACG 61.357 66.667 15.17 0.00 0.00 4.35
280 281 4.030452 GCTGCCACCAACTCACGC 62.030 66.667 0.00 0.00 0.00 5.34
281 282 2.591429 CTGCCACCAACTCACGCA 60.591 61.111 0.00 0.00 0.00 5.24
282 283 2.591429 TGCCACCAACTCACGCAG 60.591 61.111 0.00 0.00 0.00 5.18
283 284 2.280797 GCCACCAACTCACGCAGA 60.281 61.111 0.00 0.00 0.00 4.26
284 285 2.607892 GCCACCAACTCACGCAGAC 61.608 63.158 0.00 0.00 0.00 3.51
285 286 1.961277 CCACCAACTCACGCAGACC 60.961 63.158 0.00 0.00 0.00 3.85
286 287 1.069765 CACCAACTCACGCAGACCT 59.930 57.895 0.00 0.00 0.00 3.85
287 288 0.317160 CACCAACTCACGCAGACCTA 59.683 55.000 0.00 0.00 0.00 3.08
288 289 1.045407 ACCAACTCACGCAGACCTAA 58.955 50.000 0.00 0.00 0.00 2.69
289 290 1.270147 ACCAACTCACGCAGACCTAAC 60.270 52.381 0.00 0.00 0.00 2.34
290 291 1.000955 CCAACTCACGCAGACCTAACT 59.999 52.381 0.00 0.00 0.00 2.24
291 292 2.061773 CAACTCACGCAGACCTAACTG 58.938 52.381 0.00 0.00 40.43 3.16
299 300 2.839486 CAGACCTAACTGCCTTGTCA 57.161 50.000 0.00 0.00 0.00 3.58
300 301 2.417719 CAGACCTAACTGCCTTGTCAC 58.582 52.381 0.00 0.00 0.00 3.67
301 302 1.348036 AGACCTAACTGCCTTGTCACC 59.652 52.381 0.00 0.00 0.00 4.02
302 303 0.400594 ACCTAACTGCCTTGTCACCC 59.599 55.000 0.00 0.00 0.00 4.61
303 304 0.322546 CCTAACTGCCTTGTCACCCC 60.323 60.000 0.00 0.00 0.00 4.95
304 305 0.322546 CTAACTGCCTTGTCACCCCC 60.323 60.000 0.00 0.00 0.00 5.40
305 306 0.770557 TAACTGCCTTGTCACCCCCT 60.771 55.000 0.00 0.00 0.00 4.79
306 307 2.069165 AACTGCCTTGTCACCCCCTC 62.069 60.000 0.00 0.00 0.00 4.30
307 308 3.256960 TGCCTTGTCACCCCCTCC 61.257 66.667 0.00 0.00 0.00 4.30
308 309 4.410400 GCCTTGTCACCCCCTCCG 62.410 72.222 0.00 0.00 0.00 4.63
309 310 2.928396 CCTTGTCACCCCCTCCGT 60.928 66.667 0.00 0.00 0.00 4.69
310 311 2.526046 CCTTGTCACCCCCTCCGTT 61.526 63.158 0.00 0.00 0.00 4.44
311 312 1.302511 CTTGTCACCCCCTCCGTTG 60.303 63.158 0.00 0.00 0.00 4.10
312 313 2.052047 CTTGTCACCCCCTCCGTTGT 62.052 60.000 0.00 0.00 0.00 3.32
313 314 2.032071 GTCACCCCCTCCGTTGTG 59.968 66.667 0.00 0.00 0.00 3.33
314 315 2.446994 TCACCCCCTCCGTTGTGT 60.447 61.111 0.00 0.00 0.00 3.72
315 316 2.073716 TCACCCCCTCCGTTGTGTT 61.074 57.895 0.00 0.00 0.00 3.32
316 317 1.896660 CACCCCCTCCGTTGTGTTG 60.897 63.158 0.00 0.00 0.00 3.33
317 318 2.380285 ACCCCCTCCGTTGTGTTGT 61.380 57.895 0.00 0.00 0.00 3.32
318 319 1.599797 CCCCCTCCGTTGTGTTGTC 60.600 63.158 0.00 0.00 0.00 3.18
319 320 1.959226 CCCCTCCGTTGTGTTGTCG 60.959 63.158 0.00 0.00 0.00 4.35
320 321 2.604174 CCCTCCGTTGTGTTGTCGC 61.604 63.158 0.00 0.00 0.00 5.19
321 322 2.604174 CCTCCGTTGTGTTGTCGCC 61.604 63.158 0.00 0.00 0.00 5.54
322 323 2.938823 CTCCGTTGTGTTGTCGCCG 61.939 63.158 0.00 0.00 0.00 6.46
323 324 4.659874 CCGTTGTGTTGTCGCCGC 62.660 66.667 0.00 0.00 0.00 6.53
324 325 4.659874 CGTTGTGTTGTCGCCGCC 62.660 66.667 0.00 0.00 0.00 6.13
325 326 4.322385 GTTGTGTTGTCGCCGCCC 62.322 66.667 0.00 0.00 0.00 6.13
329 330 4.652131 TGTTGTCGCCGCCCCAAT 62.652 61.111 0.00 0.00 0.00 3.16
330 331 3.810896 GTTGTCGCCGCCCCAATC 61.811 66.667 0.00 0.00 0.00 2.67
331 332 4.337177 TTGTCGCCGCCCCAATCA 62.337 61.111 0.00 0.00 0.00 2.57
332 333 3.636929 TTGTCGCCGCCCCAATCAT 62.637 57.895 0.00 0.00 0.00 2.45
333 334 3.279875 GTCGCCGCCCCAATCATC 61.280 66.667 0.00 0.00 0.00 2.92
334 335 4.562425 TCGCCGCCCCAATCATCC 62.562 66.667 0.00 0.00 0.00 3.51
336 337 4.209866 GCCGCCCCAATCATCCCT 62.210 66.667 0.00 0.00 0.00 4.20
337 338 2.603008 CCGCCCCAATCATCCCTT 59.397 61.111 0.00 0.00 0.00 3.95
338 339 1.076044 CCGCCCCAATCATCCCTTT 60.076 57.895 0.00 0.00 0.00 3.11
339 340 1.394266 CCGCCCCAATCATCCCTTTG 61.394 60.000 0.00 0.00 0.00 2.77
340 341 0.395586 CGCCCCAATCATCCCTTTGA 60.396 55.000 0.00 0.00 0.00 2.69
341 342 1.864669 GCCCCAATCATCCCTTTGAA 58.135 50.000 0.00 0.00 0.00 2.69
342 343 1.482182 GCCCCAATCATCCCTTTGAAC 59.518 52.381 0.00 0.00 0.00 3.18
343 344 2.818921 CCCCAATCATCCCTTTGAACA 58.181 47.619 0.00 0.00 0.00 3.18
344 345 2.497273 CCCCAATCATCCCTTTGAACAC 59.503 50.000 0.00 0.00 0.00 3.32
345 346 3.434309 CCCAATCATCCCTTTGAACACT 58.566 45.455 0.00 0.00 0.00 3.55
346 347 4.569653 CCCCAATCATCCCTTTGAACACTA 60.570 45.833 0.00 0.00 0.00 2.74
347 348 4.641989 CCCAATCATCCCTTTGAACACTAG 59.358 45.833 0.00 0.00 0.00 2.57
348 349 4.641989 CCAATCATCCCTTTGAACACTAGG 59.358 45.833 0.00 0.00 0.00 3.02
349 350 5.500234 CAATCATCCCTTTGAACACTAGGA 58.500 41.667 0.00 0.00 0.00 2.94
350 351 5.983333 ATCATCCCTTTGAACACTAGGAT 57.017 39.130 0.00 0.00 34.44 3.24
353 354 5.983333 ATCCCTTTGAACACTAGGATGAT 57.017 39.130 0.00 0.00 32.91 2.45
354 355 5.359194 TCCCTTTGAACACTAGGATGATC 57.641 43.478 0.00 0.00 0.00 2.92
355 356 5.032846 TCCCTTTGAACACTAGGATGATCT 58.967 41.667 0.00 0.00 0.00 2.75
356 357 5.129485 TCCCTTTGAACACTAGGATGATCTC 59.871 44.000 0.00 0.00 0.00 2.75
357 358 5.363939 CCTTTGAACACTAGGATGATCTCC 58.636 45.833 0.00 0.00 45.33 3.71
364 365 3.230284 GGATGATCTCCACCGCCA 58.770 61.111 6.39 0.00 44.26 5.69
365 366 1.526887 GGATGATCTCCACCGCCAA 59.473 57.895 6.39 0.00 44.26 4.52
366 367 0.815615 GGATGATCTCCACCGCCAAC 60.816 60.000 6.39 0.00 44.26 3.77
367 368 1.153369 ATGATCTCCACCGCCAACG 60.153 57.895 0.00 0.00 39.67 4.10
368 369 1.613317 ATGATCTCCACCGCCAACGA 61.613 55.000 0.00 0.00 43.93 3.85
369 370 1.810030 GATCTCCACCGCCAACGAC 60.810 63.158 0.00 0.00 43.93 4.34
370 371 2.501223 GATCTCCACCGCCAACGACA 62.501 60.000 0.00 0.00 43.93 4.35
371 372 2.781595 ATCTCCACCGCCAACGACAC 62.782 60.000 0.00 0.00 43.93 3.67
372 373 4.612412 TCCACCGCCAACGACACC 62.612 66.667 0.00 0.00 43.93 4.16
411 412 2.549754 CTCCCTCACACACACAAACATC 59.450 50.000 0.00 0.00 0.00 3.06
419 420 2.035626 CACAAACATCGGGCCCCT 59.964 61.111 18.66 0.00 0.00 4.79
493 494 2.069273 CCGTTGAGAGGCTTTGTACAG 58.931 52.381 0.00 0.00 0.00 2.74
500 501 4.160439 TGAGAGGCTTTGTACAGAATCGAT 59.840 41.667 0.00 0.00 0.00 3.59
501 502 5.091261 AGAGGCTTTGTACAGAATCGATT 57.909 39.130 11.20 11.20 0.00 3.34
559 560 2.414750 AAAAACACAGGCAGACGGG 58.585 52.632 0.00 0.00 0.00 5.28
801 835 2.328639 GCGCGAAACCACGGAAAA 59.671 55.556 12.10 0.00 0.00 2.29
802 836 1.081708 GCGCGAAACCACGGAAAAT 60.082 52.632 12.10 0.00 0.00 1.82
804 838 0.515564 CGCGAAACCACGGAAAATCT 59.484 50.000 0.00 0.00 0.00 2.40
1162 1231 4.767255 CTGCACCTCTCCACGCCC 62.767 72.222 0.00 0.00 0.00 6.13
1381 1453 3.052082 CAGCGCTGGAAGTGGGTG 61.052 66.667 29.88 0.00 46.73 4.61
1582 1660 1.227380 CTACTGGACCATGGAGCGC 60.227 63.158 21.47 0.00 0.00 5.92
1744 1822 2.203998 CCTCCTCCACCACCACCT 60.204 66.667 0.00 0.00 0.00 4.00
1775 1853 4.560856 CGCCGAAGCCTCTCCTCG 62.561 72.222 0.00 0.00 34.57 4.63
1792 1870 2.981909 GACCAGCAGCAGCAGCAA 60.982 61.111 12.92 0.00 45.49 3.91
1807 1885 0.383231 AGCAACAACAGCAGAAGCAC 59.617 50.000 0.00 0.00 45.49 4.40
1945 2023 0.402504 AACCCAAGCATCCGTTACCA 59.597 50.000 0.00 0.00 0.00 3.25
1946 2024 0.035439 ACCCAAGCATCCGTTACCAG 60.035 55.000 0.00 0.00 0.00 4.00
1947 2025 1.376609 CCCAAGCATCCGTTACCAGC 61.377 60.000 0.00 0.00 0.00 4.85
2213 2301 0.737219 GGAGTAAAGCTGCATGCAGG 59.263 55.000 40.59 25.91 45.94 4.85
2236 2324 0.320073 CGCACGGGAGTAAAGTTGGA 60.320 55.000 0.00 0.00 44.67 3.53
2279 2367 6.828785 TCAGGGGTTTAGCTTCAAGAAATATC 59.171 38.462 0.00 0.00 0.00 1.63
2333 2424 6.767902 AGGAGTGGTATTGTATTGTATTGCTG 59.232 38.462 0.00 0.00 0.00 4.41
2477 2575 4.847444 GCCTGAAGCCTCGGAGCC 62.847 72.222 0.00 0.00 34.35 4.70
2566 2679 2.034685 GTCTCCACTTTTGTTCTTGGCC 59.965 50.000 0.00 0.00 0.00 5.36
2570 2686 3.137544 TCCACTTTTGTTCTTGGCCTCTA 59.862 43.478 3.32 0.00 0.00 2.43
2584 2700 4.079253 TGGCCTCTATTGTTCTTGGTTTC 58.921 43.478 3.32 0.00 0.00 2.78
2585 2701 4.202567 TGGCCTCTATTGTTCTTGGTTTCT 60.203 41.667 3.32 0.00 0.00 2.52
2610 2727 6.951062 TTGTGTCAATCCATTTGAAGTGTA 57.049 33.333 0.00 0.00 45.71 2.90
2614 2731 6.017109 GTGTCAATCCATTTGAAGTGTAGTGT 60.017 38.462 0.00 0.00 45.71 3.55
2617 2734 8.730680 GTCAATCCATTTGAAGTGTAGTGTTAT 58.269 33.333 0.00 0.00 45.71 1.89
2623 2740 9.289303 CCATTTGAAGTGTAGTGTTATTAATGC 57.711 33.333 0.00 0.00 0.00 3.56
2626 2743 9.727859 TTTGAAGTGTAGTGTTATTAATGCCTA 57.272 29.630 0.00 0.00 0.00 3.93
2627 2744 8.712285 TGAAGTGTAGTGTTATTAATGCCTAC 57.288 34.615 0.00 3.99 0.00 3.18
2651 2772 6.540189 ACTTACATTGATGCTAAGCTAACAGG 59.460 38.462 0.00 0.00 31.04 4.00
2652 2773 4.848357 ACATTGATGCTAAGCTAACAGGT 58.152 39.130 0.00 0.00 0.00 4.00
2670 2791 9.166173 CTAACAGGTGTGATCATGATCTTTTTA 57.834 33.333 30.65 17.81 38.60 1.52
2673 2794 7.335422 ACAGGTGTGATCATGATCTTTTTAGTC 59.665 37.037 30.65 14.82 38.60 2.59
2703 2824 1.017387 TGTTGTGTGTACGCAATGCA 58.983 45.000 11.40 7.27 46.37 3.96
3117 3260 3.004315 AGTCGTTACTTTTTGCACCATGG 59.996 43.478 11.19 11.19 29.00 3.66
3156 3303 4.413969 CAAACGCATGCAAGATATGACAA 58.586 39.130 19.57 0.00 0.00 3.18
3182 3329 1.469767 GCATCAAGATTTGGAACGGGC 60.470 52.381 0.00 0.00 0.00 6.13
3185 3332 2.159382 TCAAGATTTGGAACGGGCTTC 58.841 47.619 0.00 0.00 0.00 3.86
3188 3335 2.369394 AGATTTGGAACGGGCTTCATC 58.631 47.619 0.00 0.00 0.00 2.92
3375 3534 0.461163 GGCGTTGCTGGGTTTTGTTT 60.461 50.000 0.00 0.00 0.00 2.83
3405 3564 1.278238 GTCGTGGACCGTGATGATTC 58.722 55.000 0.00 0.00 37.94 2.52
3409 3568 0.177836 TGGACCGTGATGATTCGCAT 59.822 50.000 0.00 0.00 40.77 4.73
3472 3631 1.055040 GGGCCTACATGCATCTCTCT 58.945 55.000 0.84 0.00 0.00 3.10
3473 3632 1.001860 GGGCCTACATGCATCTCTCTC 59.998 57.143 0.84 0.00 0.00 3.20
3485 3644 4.202295 TGCATCTCTCTCTCTCTCTCTCTC 60.202 50.000 0.00 0.00 0.00 3.20
3502 3661 5.931724 TCTCTCTCTAGATCAAGTGCGATAG 59.068 44.000 0.00 0.00 0.00 2.08
3585 3754 3.941483 GTCACCTACGCTACCTACTTGTA 59.059 47.826 0.00 0.00 0.00 2.41
3664 3841 0.966875 TCAATGCAATCGCCTGCCTT 60.967 50.000 0.00 0.65 41.90 4.35
3669 3846 2.020131 CAATCGCCTGCCTTGCTAG 58.980 57.895 0.00 0.00 0.00 3.42
3670 3847 1.821332 AATCGCCTGCCTTGCTAGC 60.821 57.895 8.10 8.10 0.00 3.42
3671 3848 2.262774 AATCGCCTGCCTTGCTAGCT 62.263 55.000 17.23 0.00 0.00 3.32
3672 3849 1.402896 ATCGCCTGCCTTGCTAGCTA 61.403 55.000 17.23 7.59 0.00 3.32
3673 3850 1.593750 CGCCTGCCTTGCTAGCTAG 60.594 63.158 16.84 16.84 0.00 3.42
3674 3851 1.227793 GCCTGCCTTGCTAGCTAGG 60.228 63.158 33.05 33.05 40.94 3.02
3678 3855 2.423446 CCTTGCTAGCTAGGCCCG 59.577 66.667 28.41 8.74 32.76 6.13
3679 3856 2.435693 CCTTGCTAGCTAGGCCCGT 61.436 63.158 28.41 0.00 32.76 5.28
3680 3857 1.068250 CTTGCTAGCTAGGCCCGTC 59.932 63.158 22.10 4.95 0.00 4.79
3681 3858 1.381327 TTGCTAGCTAGGCCCGTCT 60.381 57.895 22.10 0.00 0.00 4.18
3714 3929 1.881973 ACTTGACTCGCGTACCTAACA 59.118 47.619 5.77 0.00 0.00 2.41
3789 4011 2.433868 AGTACTCGCGACAATGTGTT 57.566 45.000 3.71 0.00 0.00 3.32
3790 4012 3.564235 AGTACTCGCGACAATGTGTTA 57.436 42.857 3.71 0.00 0.00 2.41
3791 4013 4.106029 AGTACTCGCGACAATGTGTTAT 57.894 40.909 3.71 0.00 0.00 1.89
3792 4014 3.857665 AGTACTCGCGACAATGTGTTATG 59.142 43.478 3.71 0.00 0.00 1.90
3793 4015 2.683968 ACTCGCGACAATGTGTTATGT 58.316 42.857 3.71 0.00 0.00 2.29
3794 4016 2.411748 ACTCGCGACAATGTGTTATGTG 59.588 45.455 3.71 0.00 0.00 3.21
3795 4017 2.409012 TCGCGACAATGTGTTATGTGT 58.591 42.857 3.71 0.00 0.00 3.72
3796 4018 2.410392 TCGCGACAATGTGTTATGTGTC 59.590 45.455 3.71 0.00 37.59 3.67
3812 4034 3.387947 TCGACTCGCCTTTCCCCC 61.388 66.667 0.00 0.00 0.00 5.40
3824 4046 1.564348 CTTTCCCCCTAAAGGCAGCTA 59.436 52.381 0.00 0.00 33.64 3.32
3825 4047 0.916809 TTCCCCCTAAAGGCAGCTAC 59.083 55.000 0.00 0.00 0.00 3.58
3826 4048 0.986550 TCCCCCTAAAGGCAGCTACC 60.987 60.000 0.00 0.00 0.00 3.18
3828 4050 0.846693 CCCCTAAAGGCAGCTACCAT 59.153 55.000 5.58 0.00 0.00 3.55
3829 4051 1.202818 CCCCTAAAGGCAGCTACCATC 60.203 57.143 5.58 0.00 0.00 3.51
3830 4052 1.771255 CCCTAAAGGCAGCTACCATCT 59.229 52.381 5.58 0.00 0.00 2.90
3832 4054 3.244249 CCCTAAAGGCAGCTACCATCTAC 60.244 52.174 5.58 0.00 0.00 2.59
3833 4055 3.643792 CCTAAAGGCAGCTACCATCTACT 59.356 47.826 5.58 0.00 0.00 2.57
3834 4056 3.550437 AAAGGCAGCTACCATCTACTG 57.450 47.619 5.58 0.00 0.00 2.74
3835 4057 2.461300 AGGCAGCTACCATCTACTGA 57.539 50.000 5.58 0.00 31.67 3.41
3836 4058 2.969628 AGGCAGCTACCATCTACTGAT 58.030 47.619 5.58 0.00 31.67 2.90
3837 4059 2.896685 AGGCAGCTACCATCTACTGATC 59.103 50.000 5.58 0.00 31.67 2.92
3838 4060 2.630098 GGCAGCTACCATCTACTGATCA 59.370 50.000 0.00 0.00 31.67 2.92
3839 4061 3.260380 GGCAGCTACCATCTACTGATCAT 59.740 47.826 0.00 0.00 31.67 2.45
3840 4062 4.244066 GCAGCTACCATCTACTGATCATG 58.756 47.826 0.00 0.00 31.67 3.07
3845 4089 4.797800 ACCATCTACTGATCATGGATCG 57.202 45.455 17.29 7.31 41.51 3.69
3849 4093 2.958355 TCTACTGATCATGGATCGTGCA 59.042 45.455 0.00 0.00 41.51 4.57
3862 4106 4.996758 TGGATCGTGCAACATATATCTTGG 59.003 41.667 3.31 0.00 35.74 3.61
3908 4152 8.463930 ACACTGATACATTTCAAAAGAGGAAA 57.536 30.769 0.00 0.00 38.49 3.13
3909 4153 9.082313 ACACTGATACATTTCAAAAGAGGAAAT 57.918 29.630 0.00 0.00 43.71 2.17
3923 4167 4.062991 AGAGGAAATCAACCACAACGTAC 58.937 43.478 0.00 0.00 0.00 3.67
3928 4172 6.072893 AGGAAATCAACCACAACGTACAATAC 60.073 38.462 0.00 0.00 0.00 1.89
3966 4210 9.422681 AGCCACTCTATCTAACTGATAAAACTA 57.577 33.333 0.00 0.00 37.22 2.24
3967 4211 9.685828 GCCACTCTATCTAACTGATAAAACTAG 57.314 37.037 0.00 0.00 37.22 2.57
3986 4230 1.341209 AGATGATACCTCGCGCATTGA 59.659 47.619 8.75 0.00 0.00 2.57
3987 4231 1.723542 GATGATACCTCGCGCATTGAG 59.276 52.381 8.75 5.96 0.00 3.02
3988 4232 0.875908 TGATACCTCGCGCATTGAGC 60.876 55.000 8.75 1.88 40.87 4.26
3989 4233 0.875908 GATACCTCGCGCATTGAGCA 60.876 55.000 8.75 0.00 46.13 4.26
3990 4234 1.154205 ATACCTCGCGCATTGAGCAC 61.154 55.000 8.75 0.00 46.13 4.40
3991 4235 2.499756 TACCTCGCGCATTGAGCACA 62.500 55.000 8.75 0.00 46.13 4.57
3992 4236 2.398429 CTCGCGCATTGAGCACAG 59.602 61.111 8.75 3.85 46.13 3.66
3995 4239 1.207339 CGCGCATTGAGCACAGAAA 59.793 52.632 8.75 0.00 46.13 2.52
3996 4240 0.385849 CGCGCATTGAGCACAGAAAA 60.386 50.000 8.75 0.00 46.13 2.29
3997 4241 1.055338 GCGCATTGAGCACAGAAAAC 58.945 50.000 0.30 0.00 46.13 2.43
3998 4242 1.689959 CGCATTGAGCACAGAAAACC 58.310 50.000 0.00 0.00 46.13 3.27
4000 4244 2.669364 GCATTGAGCACAGAAAACCAG 58.331 47.619 0.00 0.00 44.79 4.00
4001 4245 2.294233 GCATTGAGCACAGAAAACCAGA 59.706 45.455 0.00 0.00 44.79 3.86
4002 4246 3.854784 GCATTGAGCACAGAAAACCAGAC 60.855 47.826 0.00 0.00 44.79 3.51
4092 4348 9.471702 AAGTAGAAACCATTTCATGAGATTCAT 57.528 29.630 0.00 0.00 42.10 2.57
4093 4349 9.471702 AGTAGAAACCATTTCATGAGATTCATT 57.528 29.630 0.00 0.00 42.10 2.57
4101 4387 9.177304 CCATTTCATGAGATTCATTATGAAACG 57.823 33.333 11.88 12.90 46.24 3.60
4144 4430 4.574599 ATGCTCTCTTTTCCACAAACAC 57.425 40.909 0.00 0.00 0.00 3.32
4147 4433 4.036734 TGCTCTCTTTTCCACAAACACATC 59.963 41.667 0.00 0.00 0.00 3.06
4150 4436 6.075762 TCTCTTTTCCACAAACACATCATG 57.924 37.500 0.00 0.00 0.00 3.07
4157 4443 5.312079 TCCACAAACACATCATGTCATGTA 58.688 37.500 12.54 0.56 42.31 2.29
4158 4444 5.945191 TCCACAAACACATCATGTCATGTAT 59.055 36.000 12.54 2.85 42.31 2.29
4159 4445 7.108847 TCCACAAACACATCATGTCATGTATA 58.891 34.615 12.54 0.00 42.31 1.47
4160 4446 7.065683 TCCACAAACACATCATGTCATGTATAC 59.934 37.037 12.54 0.00 42.31 1.47
4161 4447 7.148272 CCACAAACACATCATGTCATGTATACA 60.148 37.037 8.27 8.27 42.31 2.29
4162 4448 7.906527 CACAAACACATCATGTCATGTATACAG 59.093 37.037 11.91 4.09 42.31 2.74
4218 4504 2.824936 CCCGTAGCTCAGAGATGATGAT 59.175 50.000 0.00 0.00 0.00 2.45
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 8.064336 TGGCCTACTTGTAAGTTGTTTAAAAA 57.936 30.769 3.32 0.00 40.37 1.94
31 32 7.642082 TGGCCTACTTGTAAGTTGTTTAAAA 57.358 32.000 3.32 0.00 40.37 1.52
32 33 7.339976 ACTTGGCCTACTTGTAAGTTGTTTAAA 59.660 33.333 3.32 0.00 40.37 1.52
33 34 6.829811 ACTTGGCCTACTTGTAAGTTGTTTAA 59.170 34.615 3.32 0.00 40.37 1.52
34 35 6.261381 CACTTGGCCTACTTGTAAGTTGTTTA 59.739 38.462 3.32 0.00 40.37 2.01
35 36 5.067283 CACTTGGCCTACTTGTAAGTTGTTT 59.933 40.000 3.32 0.00 40.37 2.83
36 37 4.578928 CACTTGGCCTACTTGTAAGTTGTT 59.421 41.667 3.32 0.00 40.37 2.83
37 38 4.134563 CACTTGGCCTACTTGTAAGTTGT 58.865 43.478 3.32 0.00 40.37 3.32
38 39 4.385825 TCACTTGGCCTACTTGTAAGTTG 58.614 43.478 3.32 1.08 40.37 3.16
39 40 4.699925 TCACTTGGCCTACTTGTAAGTT 57.300 40.909 3.32 0.00 40.37 2.66
40 41 4.699925 TTCACTTGGCCTACTTGTAAGT 57.300 40.909 3.32 0.00 42.91 2.24
41 42 5.531287 AGTTTTCACTTGGCCTACTTGTAAG 59.469 40.000 3.32 0.00 0.00 2.34
42 43 5.442391 AGTTTTCACTTGGCCTACTTGTAA 58.558 37.500 3.32 0.00 0.00 2.41
43 44 5.043737 AGTTTTCACTTGGCCTACTTGTA 57.956 39.130 3.32 0.00 0.00 2.41
44 45 3.898482 AGTTTTCACTTGGCCTACTTGT 58.102 40.909 3.32 0.00 0.00 3.16
45 46 5.531287 AGTTAGTTTTCACTTGGCCTACTTG 59.469 40.000 3.32 0.00 34.06 3.16
46 47 5.691896 AGTTAGTTTTCACTTGGCCTACTT 58.308 37.500 3.32 0.00 34.06 2.24
47 48 5.071923 AGAGTTAGTTTTCACTTGGCCTACT 59.928 40.000 3.32 0.00 34.06 2.57
48 49 5.306394 AGAGTTAGTTTTCACTTGGCCTAC 58.694 41.667 3.32 0.00 34.06 3.18
49 50 5.562298 AGAGTTAGTTTTCACTTGGCCTA 57.438 39.130 3.32 0.00 34.06 3.93
50 51 4.439253 AGAGTTAGTTTTCACTTGGCCT 57.561 40.909 3.32 0.00 34.06 5.19
51 52 4.023107 GGAAGAGTTAGTTTTCACTTGGCC 60.023 45.833 0.00 0.00 34.06 5.36
52 53 4.023107 GGGAAGAGTTAGTTTTCACTTGGC 60.023 45.833 0.00 0.00 34.06 4.52
53 54 5.130350 TGGGAAGAGTTAGTTTTCACTTGG 58.870 41.667 0.00 0.00 34.06 3.61
54 55 6.884280 ATGGGAAGAGTTAGTTTTCACTTG 57.116 37.500 0.00 0.00 34.06 3.16
55 56 7.060421 TCAATGGGAAGAGTTAGTTTTCACTT 58.940 34.615 0.00 0.00 34.06 3.16
56 57 6.601332 TCAATGGGAAGAGTTAGTTTTCACT 58.399 36.000 0.00 0.00 36.99 3.41
57 58 6.710744 TCTCAATGGGAAGAGTTAGTTTTCAC 59.289 38.462 0.00 0.00 33.63 3.18
58 59 6.837312 TCTCAATGGGAAGAGTTAGTTTTCA 58.163 36.000 0.00 0.00 33.63 2.69
59 60 7.661847 TCTTCTCAATGGGAAGAGTTAGTTTTC 59.338 37.037 20.69 0.00 42.59 2.29
60 61 7.518188 TCTTCTCAATGGGAAGAGTTAGTTTT 58.482 34.615 20.69 0.00 42.59 2.43
61 62 7.079451 TCTTCTCAATGGGAAGAGTTAGTTT 57.921 36.000 20.69 0.00 42.59 2.66
62 63 6.688073 TCTTCTCAATGGGAAGAGTTAGTT 57.312 37.500 20.69 0.00 42.59 2.24
63 64 6.688073 TTCTTCTCAATGGGAAGAGTTAGT 57.312 37.500 22.89 0.00 46.23 2.24
64 65 6.765512 GGATTCTTCTCAATGGGAAGAGTTAG 59.234 42.308 22.89 0.00 46.23 2.34
65 66 6.445139 AGGATTCTTCTCAATGGGAAGAGTTA 59.555 38.462 22.89 11.31 46.23 2.24
66 67 5.252630 AGGATTCTTCTCAATGGGAAGAGTT 59.747 40.000 22.89 15.74 46.23 3.01
67 68 4.787534 AGGATTCTTCTCAATGGGAAGAGT 59.212 41.667 22.89 20.92 46.23 3.24
68 69 5.367302 GAGGATTCTTCTCAATGGGAAGAG 58.633 45.833 22.89 0.44 46.23 2.85
69 70 4.164988 GGAGGATTCTTCTCAATGGGAAGA 59.835 45.833 20.69 20.69 44.77 2.87
70 71 4.459330 GGAGGATTCTTCTCAATGGGAAG 58.541 47.826 16.41 16.41 40.85 3.46
71 72 3.203040 GGGAGGATTCTTCTCAATGGGAA 59.797 47.826 0.00 0.00 33.18 3.97
72 73 2.780010 GGGAGGATTCTTCTCAATGGGA 59.220 50.000 0.00 0.00 33.18 4.37
73 74 2.486191 CGGGAGGATTCTTCTCAATGGG 60.486 54.545 0.00 0.00 33.18 4.00
74 75 2.171448 ACGGGAGGATTCTTCTCAATGG 59.829 50.000 0.00 0.00 33.18 3.16
75 76 3.462021 GACGGGAGGATTCTTCTCAATG 58.538 50.000 0.00 0.00 33.18 2.82
76 77 2.101582 CGACGGGAGGATTCTTCTCAAT 59.898 50.000 0.00 0.00 33.18 2.57
77 78 1.476891 CGACGGGAGGATTCTTCTCAA 59.523 52.381 0.00 0.00 33.18 3.02
78 79 1.103803 CGACGGGAGGATTCTTCTCA 58.896 55.000 0.00 0.00 33.18 3.27
79 80 1.390565 TCGACGGGAGGATTCTTCTC 58.609 55.000 0.00 0.00 0.00 2.87
80 81 1.683917 CATCGACGGGAGGATTCTTCT 59.316 52.381 0.00 0.00 0.00 2.85
81 82 1.870167 GCATCGACGGGAGGATTCTTC 60.870 57.143 0.00 0.00 0.00 2.87
82 83 0.105039 GCATCGACGGGAGGATTCTT 59.895 55.000 0.00 0.00 0.00 2.52
83 84 0.757188 AGCATCGACGGGAGGATTCT 60.757 55.000 0.00 0.00 0.00 2.40
84 85 0.959553 TAGCATCGACGGGAGGATTC 59.040 55.000 0.00 0.00 0.00 2.52
85 86 1.273606 CATAGCATCGACGGGAGGATT 59.726 52.381 0.00 0.00 0.00 3.01
86 87 0.891373 CATAGCATCGACGGGAGGAT 59.109 55.000 0.00 0.00 0.00 3.24
87 88 0.467474 ACATAGCATCGACGGGAGGA 60.467 55.000 0.00 0.00 0.00 3.71
88 89 0.039074 GACATAGCATCGACGGGAGG 60.039 60.000 0.00 0.00 0.00 4.30
89 90 0.668535 TGACATAGCATCGACGGGAG 59.331 55.000 0.00 0.00 0.00 4.30
90 91 0.384309 GTGACATAGCATCGACGGGA 59.616 55.000 0.00 0.00 0.00 5.14
91 92 0.102300 TGTGACATAGCATCGACGGG 59.898 55.000 0.00 0.00 0.00 5.28
92 93 1.921243 TTGTGACATAGCATCGACGG 58.079 50.000 0.00 0.00 0.00 4.79
93 94 2.284457 CGTTTGTGACATAGCATCGACG 60.284 50.000 0.00 0.00 0.00 5.12
94 95 2.666508 ACGTTTGTGACATAGCATCGAC 59.333 45.455 0.00 0.00 0.00 4.20
95 96 2.954316 ACGTTTGTGACATAGCATCGA 58.046 42.857 0.00 0.00 0.00 3.59
96 97 3.857665 ACTACGTTTGTGACATAGCATCG 59.142 43.478 0.00 0.00 27.10 3.84
97 98 5.779806 AACTACGTTTGTGACATAGCATC 57.220 39.130 0.00 0.00 27.10 3.91
98 99 7.171848 TGTTTAACTACGTTTGTGACATAGCAT 59.828 33.333 0.00 0.00 27.10 3.79
99 100 6.479331 TGTTTAACTACGTTTGTGACATAGCA 59.521 34.615 0.00 0.00 27.10 3.49
100 101 6.879962 TGTTTAACTACGTTTGTGACATAGC 58.120 36.000 0.00 0.00 27.10 2.97
101 102 8.757789 TCTTGTTTAACTACGTTTGTGACATAG 58.242 33.333 0.00 0.00 30.56 2.23
102 103 8.645730 TCTTGTTTAACTACGTTTGTGACATA 57.354 30.769 0.00 0.00 0.00 2.29
103 104 7.279313 ACTCTTGTTTAACTACGTTTGTGACAT 59.721 33.333 0.00 0.00 0.00 3.06
104 105 6.591062 ACTCTTGTTTAACTACGTTTGTGACA 59.409 34.615 0.00 0.00 0.00 3.58
105 106 6.997222 ACTCTTGTTTAACTACGTTTGTGAC 58.003 36.000 0.00 0.00 0.00 3.67
106 107 6.020440 CGACTCTTGTTTAACTACGTTTGTGA 60.020 38.462 0.00 0.00 0.00 3.58
107 108 6.118195 CGACTCTTGTTTAACTACGTTTGTG 58.882 40.000 0.00 0.00 0.00 3.33
108 109 5.276536 GCGACTCTTGTTTAACTACGTTTGT 60.277 40.000 0.00 0.00 0.00 2.83
109 110 5.128468 GCGACTCTTGTTTAACTACGTTTG 58.872 41.667 0.00 0.00 0.00 2.93
110 111 4.805192 TGCGACTCTTGTTTAACTACGTTT 59.195 37.500 0.00 0.00 0.00 3.60
111 112 4.362279 TGCGACTCTTGTTTAACTACGTT 58.638 39.130 0.00 0.00 0.00 3.99
112 113 3.968649 TGCGACTCTTGTTTAACTACGT 58.031 40.909 0.00 0.00 0.00 3.57
113 114 6.525628 TCTTATGCGACTCTTGTTTAACTACG 59.474 38.462 0.00 0.00 0.00 3.51
114 115 7.807687 TCTTATGCGACTCTTGTTTAACTAC 57.192 36.000 0.00 0.00 0.00 2.73
115 116 8.821147 TTTCTTATGCGACTCTTGTTTAACTA 57.179 30.769 0.00 0.00 0.00 2.24
116 117 7.724305 TTTCTTATGCGACTCTTGTTTAACT 57.276 32.000 0.00 0.00 0.00 2.24
117 118 7.534239 CCTTTTCTTATGCGACTCTTGTTTAAC 59.466 37.037 0.00 0.00 0.00 2.01
118 119 7.442969 TCCTTTTCTTATGCGACTCTTGTTTAA 59.557 33.333 0.00 0.00 0.00 1.52
119 120 6.932400 TCCTTTTCTTATGCGACTCTTGTTTA 59.068 34.615 0.00 0.00 0.00 2.01
120 121 5.763204 TCCTTTTCTTATGCGACTCTTGTTT 59.237 36.000 0.00 0.00 0.00 2.83
121 122 5.305585 TCCTTTTCTTATGCGACTCTTGTT 58.694 37.500 0.00 0.00 0.00 2.83
122 123 4.894784 TCCTTTTCTTATGCGACTCTTGT 58.105 39.130 0.00 0.00 0.00 3.16
123 124 4.201763 GCTCCTTTTCTTATGCGACTCTTG 60.202 45.833 0.00 0.00 0.00 3.02
124 125 3.935828 GCTCCTTTTCTTATGCGACTCTT 59.064 43.478 0.00 0.00 0.00 2.85
125 126 3.526534 GCTCCTTTTCTTATGCGACTCT 58.473 45.455 0.00 0.00 0.00 3.24
126 127 2.609916 GGCTCCTTTTCTTATGCGACTC 59.390 50.000 0.00 0.00 0.00 3.36
127 128 2.027192 TGGCTCCTTTTCTTATGCGACT 60.027 45.455 0.00 0.00 0.00 4.18
128 129 2.356135 TGGCTCCTTTTCTTATGCGAC 58.644 47.619 0.00 0.00 0.00 5.19
129 130 2.779755 TGGCTCCTTTTCTTATGCGA 57.220 45.000 0.00 0.00 0.00 5.10
130 131 6.992063 ATATATGGCTCCTTTTCTTATGCG 57.008 37.500 0.00 0.00 0.00 4.73
131 132 8.579863 ACAAATATATGGCTCCTTTTCTTATGC 58.420 33.333 0.00 0.00 0.00 3.14
133 134 9.866655 TGACAAATATATGGCTCCTTTTCTTAT 57.133 29.630 0.00 0.00 0.00 1.73
134 135 9.693739 TTGACAAATATATGGCTCCTTTTCTTA 57.306 29.630 0.00 0.00 0.00 2.10
135 136 8.593945 TTGACAAATATATGGCTCCTTTTCTT 57.406 30.769 0.00 0.00 0.00 2.52
136 137 8.773033 ATTGACAAATATATGGCTCCTTTTCT 57.227 30.769 0.00 0.00 0.00 2.52
137 138 9.252962 CAATTGACAAATATATGGCTCCTTTTC 57.747 33.333 0.00 0.00 0.00 2.29
138 139 7.712205 GCAATTGACAAATATATGGCTCCTTTT 59.288 33.333 10.34 0.00 0.00 2.27
139 140 7.212274 GCAATTGACAAATATATGGCTCCTTT 58.788 34.615 10.34 0.00 0.00 3.11
140 141 6.239402 GGCAATTGACAAATATATGGCTCCTT 60.239 38.462 10.34 0.00 0.00 3.36
141 142 5.244626 GGCAATTGACAAATATATGGCTCCT 59.755 40.000 10.34 0.00 0.00 3.69
142 143 5.244626 AGGCAATTGACAAATATATGGCTCC 59.755 40.000 15.18 0.00 33.83 4.70
143 144 6.154445 CAGGCAATTGACAAATATATGGCTC 58.846 40.000 15.18 0.00 35.74 4.70
144 145 5.011329 CCAGGCAATTGACAAATATATGGCT 59.989 40.000 15.18 9.81 37.39 4.75
145 146 5.221501 ACCAGGCAATTGACAAATATATGGC 60.222 40.000 15.18 8.50 30.52 4.40
146 147 6.409524 ACCAGGCAATTGACAAATATATGG 57.590 37.500 15.18 12.75 0.00 2.74
147 148 9.814899 TTTTACCAGGCAATTGACAAATATATG 57.185 29.630 15.18 0.35 0.00 1.78
148 149 9.816354 GTTTTACCAGGCAATTGACAAATATAT 57.184 29.630 15.18 0.00 0.00 0.86
149 150 7.971168 CGTTTTACCAGGCAATTGACAAATATA 59.029 33.333 15.18 0.00 0.00 0.86
150 151 6.811170 CGTTTTACCAGGCAATTGACAAATAT 59.189 34.615 15.18 0.00 0.00 1.28
151 152 6.153067 CGTTTTACCAGGCAATTGACAAATA 58.847 36.000 15.18 0.00 0.00 1.40
152 153 4.987912 CGTTTTACCAGGCAATTGACAAAT 59.012 37.500 15.18 0.00 0.00 2.32
153 154 4.142138 ACGTTTTACCAGGCAATTGACAAA 60.142 37.500 15.18 1.96 0.00 2.83
154 155 3.381908 ACGTTTTACCAGGCAATTGACAA 59.618 39.130 15.18 0.00 0.00 3.18
155 156 2.952978 ACGTTTTACCAGGCAATTGACA 59.047 40.909 15.18 0.00 0.00 3.58
156 157 3.636282 ACGTTTTACCAGGCAATTGAC 57.364 42.857 10.34 6.35 0.00 3.18
157 158 3.381908 ACAACGTTTTACCAGGCAATTGA 59.618 39.130 10.34 0.00 0.00 2.57
158 159 3.712187 ACAACGTTTTACCAGGCAATTG 58.288 40.909 0.00 0.00 0.00 2.32
159 160 4.394439 AACAACGTTTTACCAGGCAATT 57.606 36.364 0.00 0.00 0.00 2.32
160 161 4.581409 ACTAACAACGTTTTACCAGGCAAT 59.419 37.500 0.00 0.00 0.00 3.56
161 162 3.946558 ACTAACAACGTTTTACCAGGCAA 59.053 39.130 0.00 0.00 0.00 4.52
162 163 3.543665 ACTAACAACGTTTTACCAGGCA 58.456 40.909 0.00 0.00 0.00 4.75
163 164 3.363280 CGACTAACAACGTTTTACCAGGC 60.363 47.826 0.00 0.00 0.00 4.85
164 165 3.184986 CCGACTAACAACGTTTTACCAGG 59.815 47.826 0.00 0.00 0.00 4.45
165 166 3.803778 ACCGACTAACAACGTTTTACCAG 59.196 43.478 0.00 0.00 0.00 4.00
166 167 3.791245 ACCGACTAACAACGTTTTACCA 58.209 40.909 0.00 0.00 0.00 3.25
167 168 4.606012 CGAACCGACTAACAACGTTTTACC 60.606 45.833 0.00 0.00 0.00 2.85
168 169 4.436566 CGAACCGACTAACAACGTTTTAC 58.563 43.478 0.00 0.00 0.00 2.01
169 170 3.489047 CCGAACCGACTAACAACGTTTTA 59.511 43.478 0.00 0.58 0.00 1.52
170 171 2.284952 CCGAACCGACTAACAACGTTTT 59.715 45.455 0.00 0.00 0.00 2.43
171 172 1.860326 CCGAACCGACTAACAACGTTT 59.140 47.619 0.00 0.00 0.00 3.60
172 173 1.066908 TCCGAACCGACTAACAACGTT 59.933 47.619 0.00 0.00 0.00 3.99
173 174 0.667993 TCCGAACCGACTAACAACGT 59.332 50.000 0.00 0.00 0.00 3.99
174 175 1.916000 GATCCGAACCGACTAACAACG 59.084 52.381 0.00 0.00 0.00 4.10
175 176 2.265683 GGATCCGAACCGACTAACAAC 58.734 52.381 0.00 0.00 0.00 3.32
176 177 1.894466 TGGATCCGAACCGACTAACAA 59.106 47.619 7.39 0.00 0.00 2.83
177 178 1.548081 TGGATCCGAACCGACTAACA 58.452 50.000 7.39 0.00 0.00 2.41
178 179 2.265683 GTTGGATCCGAACCGACTAAC 58.734 52.381 2.22 0.00 38.41 2.34
179 180 1.135315 CGTTGGATCCGAACCGACTAA 60.135 52.381 2.22 0.00 39.07 2.24
180 181 0.452987 CGTTGGATCCGAACCGACTA 59.547 55.000 2.22 0.00 39.07 2.59
181 182 1.214589 CGTTGGATCCGAACCGACT 59.785 57.895 2.22 0.00 39.07 4.18
182 183 1.808390 CCGTTGGATCCGAACCGAC 60.808 63.158 12.48 5.19 38.17 4.79
183 184 2.574929 CCGTTGGATCCGAACCGA 59.425 61.111 12.48 0.00 0.00 4.69
184 185 3.192922 GCCGTTGGATCCGAACCG 61.193 66.667 2.22 4.03 0.00 4.44
185 186 1.814169 GAGCCGTTGGATCCGAACC 60.814 63.158 2.22 0.10 31.04 3.62
186 187 1.084370 CAGAGCCGTTGGATCCGAAC 61.084 60.000 2.22 9.81 39.17 3.95
187 188 1.218047 CAGAGCCGTTGGATCCGAA 59.782 57.895 2.22 0.00 39.17 4.30
188 189 1.680989 TCAGAGCCGTTGGATCCGA 60.681 57.895 7.39 1.27 39.17 4.55
189 190 1.519455 GTCAGAGCCGTTGGATCCG 60.519 63.158 7.39 0.00 39.17 4.18
190 191 0.250513 AAGTCAGAGCCGTTGGATCC 59.749 55.000 4.20 4.20 39.17 3.36
191 192 1.205893 AGAAGTCAGAGCCGTTGGATC 59.794 52.381 0.00 0.00 38.56 3.36
192 193 1.270907 AGAAGTCAGAGCCGTTGGAT 58.729 50.000 0.00 0.00 0.00 3.41
193 194 1.000955 GAAGAAGTCAGAGCCGTTGGA 59.999 52.381 0.00 0.00 0.00 3.53
194 195 1.001406 AGAAGAAGTCAGAGCCGTTGG 59.999 52.381 0.00 0.00 0.00 3.77
195 196 2.447244 AGAAGAAGTCAGAGCCGTTG 57.553 50.000 0.00 0.00 0.00 4.10
196 197 2.289133 GGAAGAAGAAGTCAGAGCCGTT 60.289 50.000 0.00 0.00 0.00 4.44
197 198 1.273886 GGAAGAAGAAGTCAGAGCCGT 59.726 52.381 0.00 0.00 0.00 5.68
198 199 1.548269 AGGAAGAAGAAGTCAGAGCCG 59.452 52.381 0.00 0.00 0.00 5.52
199 200 2.564947 TGAGGAAGAAGAAGTCAGAGCC 59.435 50.000 0.00 0.00 0.00 4.70
200 201 3.951775 TGAGGAAGAAGAAGTCAGAGC 57.048 47.619 0.00 0.00 0.00 4.09
201 202 5.394443 CCAGATGAGGAAGAAGAAGTCAGAG 60.394 48.000 0.00 0.00 0.00 3.35
202 203 4.465660 CCAGATGAGGAAGAAGAAGTCAGA 59.534 45.833 0.00 0.00 0.00 3.27
203 204 4.465660 TCCAGATGAGGAAGAAGAAGTCAG 59.534 45.833 0.00 0.00 33.93 3.51
204 205 4.420206 TCCAGATGAGGAAGAAGAAGTCA 58.580 43.478 0.00 0.00 33.93 3.41
205 206 5.128499 TCATCCAGATGAGGAAGAAGAAGTC 59.872 44.000 6.24 0.00 42.42 3.01
206 207 5.028802 TCATCCAGATGAGGAAGAAGAAGT 58.971 41.667 6.24 0.00 42.42 3.01
207 208 5.611128 TCATCCAGATGAGGAAGAAGAAG 57.389 43.478 6.24 0.00 42.42 2.85
220 221 4.412858 AGAAGAAGAAGGCATCATCCAGAT 59.587 41.667 0.00 0.00 37.48 2.90
221 222 3.779183 AGAAGAAGAAGGCATCATCCAGA 59.221 43.478 0.00 0.00 0.00 3.86
222 223 4.153673 AGAAGAAGAAGGCATCATCCAG 57.846 45.455 0.00 0.00 0.00 3.86
223 224 4.226846 AGAAGAAGAAGAAGGCATCATCCA 59.773 41.667 0.00 0.00 0.00 3.41
224 225 4.779696 AGAAGAAGAAGAAGGCATCATCC 58.220 43.478 0.00 0.00 0.00 3.51
225 226 6.114767 AGAAGAAGAAGAAGAAGGCATCATC 58.885 40.000 0.00 0.00 0.00 2.92
226 227 6.064735 AGAAGAAGAAGAAGAAGGCATCAT 57.935 37.500 0.00 0.00 0.00 2.45
227 228 5.495926 AGAAGAAGAAGAAGAAGGCATCA 57.504 39.130 0.00 0.00 0.00 3.07
228 229 6.172630 AGAAGAAGAAGAAGAAGAAGGCATC 58.827 40.000 0.00 0.00 0.00 3.91
229 230 6.125589 AGAAGAAGAAGAAGAAGAAGGCAT 57.874 37.500 0.00 0.00 0.00 4.40
230 231 5.559148 AGAAGAAGAAGAAGAAGAAGGCA 57.441 39.130 0.00 0.00 0.00 4.75
231 232 6.230472 AGAAGAAGAAGAAGAAGAAGAAGGC 58.770 40.000 0.00 0.00 0.00 4.35
232 233 7.387673 GGAAGAAGAAGAAGAAGAAGAAGAAGG 59.612 40.741 0.00 0.00 0.00 3.46
233 234 8.150296 AGGAAGAAGAAGAAGAAGAAGAAGAAG 58.850 37.037 0.00 0.00 0.00 2.85
234 235 8.028652 AGGAAGAAGAAGAAGAAGAAGAAGAA 57.971 34.615 0.00 0.00 0.00 2.52
235 236 7.508977 AGAGGAAGAAGAAGAAGAAGAAGAAGA 59.491 37.037 0.00 0.00 0.00 2.87
236 237 7.599998 CAGAGGAAGAAGAAGAAGAAGAAGAAG 59.400 40.741 0.00 0.00 0.00 2.85
237 238 7.441017 CAGAGGAAGAAGAAGAAGAAGAAGAA 58.559 38.462 0.00 0.00 0.00 2.52
238 239 6.014669 CCAGAGGAAGAAGAAGAAGAAGAAGA 60.015 42.308 0.00 0.00 0.00 2.87
239 240 6.165577 CCAGAGGAAGAAGAAGAAGAAGAAG 58.834 44.000 0.00 0.00 0.00 2.85
240 241 5.512232 GCCAGAGGAAGAAGAAGAAGAAGAA 60.512 44.000 0.00 0.00 0.00 2.52
241 242 4.020662 GCCAGAGGAAGAAGAAGAAGAAGA 60.021 45.833 0.00 0.00 0.00 2.87
242 243 4.020307 AGCCAGAGGAAGAAGAAGAAGAAG 60.020 45.833 0.00 0.00 0.00 2.85
243 244 3.906846 AGCCAGAGGAAGAAGAAGAAGAA 59.093 43.478 0.00 0.00 0.00 2.52
244 245 3.260380 CAGCCAGAGGAAGAAGAAGAAGA 59.740 47.826 0.00 0.00 0.00 2.87
245 246 3.598299 CAGCCAGAGGAAGAAGAAGAAG 58.402 50.000 0.00 0.00 0.00 2.85
246 247 2.289945 GCAGCCAGAGGAAGAAGAAGAA 60.290 50.000 0.00 0.00 0.00 2.52
247 248 1.277557 GCAGCCAGAGGAAGAAGAAGA 59.722 52.381 0.00 0.00 0.00 2.87
248 249 1.678425 GGCAGCCAGAGGAAGAAGAAG 60.678 57.143 6.55 0.00 0.00 2.85
249 250 0.326264 GGCAGCCAGAGGAAGAAGAA 59.674 55.000 6.55 0.00 0.00 2.52
250 251 0.837691 TGGCAGCCAGAGGAAGAAGA 60.838 55.000 11.22 0.00 0.00 2.87
251 252 0.676151 GTGGCAGCCAGAGGAAGAAG 60.676 60.000 16.83 0.00 32.34 2.85
252 253 1.376466 GTGGCAGCCAGAGGAAGAA 59.624 57.895 16.83 0.00 32.34 2.52
253 254 2.596851 GGTGGCAGCCAGAGGAAGA 61.597 63.158 16.83 0.00 32.34 2.87
254 255 2.045536 GGTGGCAGCCAGAGGAAG 60.046 66.667 16.83 0.00 32.34 3.46
255 256 2.459969 TTGGTGGCAGCCAGAGGAA 61.460 57.895 16.83 2.04 40.01 3.36
256 257 2.853542 TTGGTGGCAGCCAGAGGA 60.854 61.111 16.83 0.00 40.01 3.71
257 258 2.674380 GTTGGTGGCAGCCAGAGG 60.674 66.667 16.83 0.00 40.01 3.69
258 259 1.673665 GAGTTGGTGGCAGCCAGAG 60.674 63.158 16.83 0.00 40.01 3.35
259 260 2.431683 GAGTTGGTGGCAGCCAGA 59.568 61.111 16.83 0.61 40.01 3.86
260 261 2.113774 TGAGTTGGTGGCAGCCAG 59.886 61.111 16.83 0.00 40.01 4.85
261 262 2.203337 GTGAGTTGGTGGCAGCCA 60.203 61.111 11.22 11.22 36.62 4.75
262 263 3.357079 CGTGAGTTGGTGGCAGCC 61.357 66.667 14.97 3.66 0.00 4.85
263 264 4.030452 GCGTGAGTTGGTGGCAGC 62.030 66.667 10.30 10.30 0.00 5.25
264 265 2.591429 TGCGTGAGTTGGTGGCAG 60.591 61.111 0.00 0.00 0.00 4.85
265 266 2.591429 CTGCGTGAGTTGGTGGCA 60.591 61.111 0.00 0.00 0.00 4.92
266 267 2.280797 TCTGCGTGAGTTGGTGGC 60.281 61.111 0.00 0.00 0.00 5.01
267 268 1.961277 GGTCTGCGTGAGTTGGTGG 60.961 63.158 0.00 0.00 0.00 4.61
268 269 0.317160 TAGGTCTGCGTGAGTTGGTG 59.683 55.000 0.00 0.00 0.00 4.17
269 270 1.045407 TTAGGTCTGCGTGAGTTGGT 58.955 50.000 0.00 0.00 0.00 3.67
270 271 1.000955 AGTTAGGTCTGCGTGAGTTGG 59.999 52.381 0.00 0.00 0.00 3.77
271 272 2.061773 CAGTTAGGTCTGCGTGAGTTG 58.938 52.381 0.00 0.00 0.00 3.16
272 273 2.440539 CAGTTAGGTCTGCGTGAGTT 57.559 50.000 0.00 0.00 0.00 3.01
280 281 2.417719 GTGACAAGGCAGTTAGGTCTG 58.582 52.381 0.00 0.00 38.35 3.51
281 282 1.348036 GGTGACAAGGCAGTTAGGTCT 59.652 52.381 0.00 0.00 0.00 3.85
282 283 1.610886 GGGTGACAAGGCAGTTAGGTC 60.611 57.143 0.00 0.00 0.00 3.85
283 284 0.400594 GGGTGACAAGGCAGTTAGGT 59.599 55.000 0.00 0.00 0.00 3.08
284 285 0.322546 GGGGTGACAAGGCAGTTAGG 60.323 60.000 0.00 0.00 0.00 2.69
285 286 0.322546 GGGGGTGACAAGGCAGTTAG 60.323 60.000 0.00 0.00 0.00 2.34
286 287 0.770557 AGGGGGTGACAAGGCAGTTA 60.771 55.000 0.00 0.00 0.00 2.24
287 288 2.069165 GAGGGGGTGACAAGGCAGTT 62.069 60.000 0.00 0.00 0.00 3.16
288 289 2.450502 AGGGGGTGACAAGGCAGT 60.451 61.111 0.00 0.00 0.00 4.40
289 290 2.352805 GAGGGGGTGACAAGGCAG 59.647 66.667 0.00 0.00 0.00 4.85
290 291 3.256960 GGAGGGGGTGACAAGGCA 61.257 66.667 0.00 0.00 0.00 4.75
291 292 4.410400 CGGAGGGGGTGACAAGGC 62.410 72.222 0.00 0.00 0.00 4.35
292 293 2.526046 AACGGAGGGGGTGACAAGG 61.526 63.158 0.00 0.00 0.00 3.61
293 294 1.302511 CAACGGAGGGGGTGACAAG 60.303 63.158 0.00 0.00 0.00 3.16
294 295 2.073716 ACAACGGAGGGGGTGACAA 61.074 57.895 0.00 0.00 0.00 3.18
295 296 2.446994 ACAACGGAGGGGGTGACA 60.447 61.111 0.00 0.00 0.00 3.58
296 297 2.032071 CACAACGGAGGGGGTGAC 59.968 66.667 0.00 0.00 33.16 3.67
297 298 2.073716 AACACAACGGAGGGGGTGA 61.074 57.895 0.00 0.00 35.33 4.02
298 299 1.896660 CAACACAACGGAGGGGGTG 60.897 63.158 0.00 0.00 37.29 4.61
299 300 2.333701 GACAACACAACGGAGGGGGT 62.334 60.000 0.00 0.00 0.00 4.95
300 301 1.599797 GACAACACAACGGAGGGGG 60.600 63.158 0.00 0.00 0.00 5.40
301 302 1.959226 CGACAACACAACGGAGGGG 60.959 63.158 0.00 0.00 0.00 4.79
302 303 2.604174 GCGACAACACAACGGAGGG 61.604 63.158 0.00 0.00 0.00 4.30
303 304 2.604174 GGCGACAACACAACGGAGG 61.604 63.158 0.00 0.00 0.00 4.30
304 305 2.935955 GGCGACAACACAACGGAG 59.064 61.111 0.00 0.00 0.00 4.63
305 306 2.962786 CGGCGACAACACAACGGA 60.963 61.111 0.00 0.00 0.00 4.69
306 307 4.659874 GCGGCGACAACACAACGG 62.660 66.667 12.98 0.00 0.00 4.44
307 308 4.659874 GGCGGCGACAACACAACG 62.660 66.667 12.98 0.00 0.00 4.10
308 309 4.322385 GGGCGGCGACAACACAAC 62.322 66.667 17.61 0.00 0.00 3.32
312 313 4.652131 ATTGGGGCGGCGACAACA 62.652 61.111 17.61 10.74 0.00 3.33
313 314 3.810896 GATTGGGGCGGCGACAAC 61.811 66.667 17.61 7.54 0.00 3.32
314 315 3.636929 ATGATTGGGGCGGCGACAA 62.637 57.895 17.61 17.52 0.00 3.18
315 316 4.108299 ATGATTGGGGCGGCGACA 62.108 61.111 17.61 4.99 0.00 4.35
316 317 3.279875 GATGATTGGGGCGGCGAC 61.280 66.667 12.98 8.16 0.00 5.19
317 318 4.562425 GGATGATTGGGGCGGCGA 62.562 66.667 12.98 0.00 0.00 5.54
319 320 3.738745 AAGGGATGATTGGGGCGGC 62.739 63.158 0.00 0.00 0.00 6.53
320 321 1.076044 AAAGGGATGATTGGGGCGG 60.076 57.895 0.00 0.00 0.00 6.13
321 322 0.395586 TCAAAGGGATGATTGGGGCG 60.396 55.000 0.00 0.00 0.00 6.13
322 323 1.482182 GTTCAAAGGGATGATTGGGGC 59.518 52.381 0.00 0.00 0.00 5.80
323 324 2.497273 GTGTTCAAAGGGATGATTGGGG 59.503 50.000 0.00 0.00 0.00 4.96
324 325 3.434309 AGTGTTCAAAGGGATGATTGGG 58.566 45.455 0.00 0.00 0.00 4.12
325 326 4.641989 CCTAGTGTTCAAAGGGATGATTGG 59.358 45.833 0.00 0.00 0.00 3.16
326 327 5.500234 TCCTAGTGTTCAAAGGGATGATTG 58.500 41.667 0.00 0.00 0.00 2.67
327 328 5.779241 TCCTAGTGTTCAAAGGGATGATT 57.221 39.130 0.00 0.00 0.00 2.57
328 329 5.983333 ATCCTAGTGTTCAAAGGGATGAT 57.017 39.130 0.00 0.00 33.05 2.45
330 331 5.102953 TCATCCTAGTGTTCAAAGGGATG 57.897 43.478 12.03 12.03 46.60 3.51
331 332 5.669447 AGATCATCCTAGTGTTCAAAGGGAT 59.331 40.000 0.00 0.00 34.36 3.85
332 333 5.032846 AGATCATCCTAGTGTTCAAAGGGA 58.967 41.667 0.00 0.00 0.00 4.20
333 334 5.363939 GAGATCATCCTAGTGTTCAAAGGG 58.636 45.833 0.00 0.00 0.00 3.95
334 335 5.363939 GGAGATCATCCTAGTGTTCAAAGG 58.636 45.833 0.00 0.00 45.64 3.11
348 349 1.154205 CGTTGGCGGTGGAGATCATC 61.154 60.000 0.00 0.00 0.00 2.92
349 350 1.153369 CGTTGGCGGTGGAGATCAT 60.153 57.895 0.00 0.00 0.00 2.45
350 351 2.264480 CGTTGGCGGTGGAGATCA 59.736 61.111 0.00 0.00 0.00 2.92
351 352 1.810030 GTCGTTGGCGGTGGAGATC 60.810 63.158 0.00 0.00 38.89 2.75
352 353 2.264794 GTCGTTGGCGGTGGAGAT 59.735 61.111 0.00 0.00 38.89 2.75
353 354 3.228017 TGTCGTTGGCGGTGGAGA 61.228 61.111 0.00 0.00 38.89 3.71
354 355 3.041940 GTGTCGTTGGCGGTGGAG 61.042 66.667 0.00 0.00 38.89 3.86
355 356 4.612412 GGTGTCGTTGGCGGTGGA 62.612 66.667 0.00 0.00 38.89 4.02
386 387 2.529136 TGTGTGTGAGGGAGGGGG 60.529 66.667 0.00 0.00 0.00 5.40
387 388 1.705002 TTGTGTGTGTGAGGGAGGGG 61.705 60.000 0.00 0.00 0.00 4.79
388 389 0.182537 TTTGTGTGTGTGAGGGAGGG 59.817 55.000 0.00 0.00 0.00 4.30
389 390 1.308998 GTTTGTGTGTGTGAGGGAGG 58.691 55.000 0.00 0.00 0.00 4.30
390 391 2.036958 TGTTTGTGTGTGTGAGGGAG 57.963 50.000 0.00 0.00 0.00 4.30
391 392 2.571212 GATGTTTGTGTGTGTGAGGGA 58.429 47.619 0.00 0.00 0.00 4.20
392 393 1.264020 CGATGTTTGTGTGTGTGAGGG 59.736 52.381 0.00 0.00 0.00 4.30
393 394 1.264020 CCGATGTTTGTGTGTGTGAGG 59.736 52.381 0.00 0.00 0.00 3.86
394 395 1.264020 CCCGATGTTTGTGTGTGTGAG 59.736 52.381 0.00 0.00 0.00 3.51
395 396 1.304254 CCCGATGTTTGTGTGTGTGA 58.696 50.000 0.00 0.00 0.00 3.58
396 397 0.317770 GCCCGATGTTTGTGTGTGTG 60.318 55.000 0.00 0.00 0.00 3.82
397 398 1.452145 GGCCCGATGTTTGTGTGTGT 61.452 55.000 0.00 0.00 0.00 3.72
500 501 8.087750 GGTGACTGAAATTGTAATTTGGATCAA 58.912 33.333 7.27 0.00 38.64 2.57
501 502 7.451255 AGGTGACTGAAATTGTAATTTGGATCA 59.549 33.333 7.27 5.38 41.13 2.92
545 546 0.818040 GTTTTCCCGTCTGCCTGTGT 60.818 55.000 0.00 0.00 0.00 3.72
546 547 0.817634 TGTTTTCCCGTCTGCCTGTG 60.818 55.000 0.00 0.00 0.00 3.66
548 549 0.593128 CTTGTTTTCCCGTCTGCCTG 59.407 55.000 0.00 0.00 0.00 4.85
552 553 1.792949 CGTCTCTTGTTTTCCCGTCTG 59.207 52.381 0.00 0.00 0.00 3.51
559 560 3.363084 CCGCTTTCTCGTCTCTTGTTTTC 60.363 47.826 0.00 0.00 0.00 2.29
665 669 0.944386 AACTGAACGCATTTGCTCGT 59.056 45.000 0.51 0.00 41.06 4.18
799 833 2.032030 CAGCGAACGTTTCCACAGATTT 60.032 45.455 0.46 0.00 0.00 2.17
801 835 1.148310 CAGCGAACGTTTCCACAGAT 58.852 50.000 0.46 0.00 0.00 2.90
802 836 0.878523 CCAGCGAACGTTTCCACAGA 60.879 55.000 0.46 0.00 0.00 3.41
804 838 1.890041 CCCAGCGAACGTTTCCACA 60.890 57.895 0.46 0.00 0.00 4.17
1381 1453 3.526534 GTTGATCCAGCAGTAGTTCTCC 58.473 50.000 0.00 0.00 0.00 3.71
1775 1853 2.981909 TTGCTGCTGCTGCTGGTC 60.982 61.111 27.67 8.41 40.48 4.02
1792 1870 1.103398 GGTGGTGCTTCTGCTGTTGT 61.103 55.000 0.00 0.00 40.48 3.32
1807 1885 1.293498 CTGAGGGTGAAGACGGTGG 59.707 63.158 0.00 0.00 0.00 4.61
1945 2023 5.752036 TGCATGGATAGATTAAGCTAGCT 57.248 39.130 12.68 12.68 0.00 3.32
1946 2024 6.998968 AATGCATGGATAGATTAAGCTAGC 57.001 37.500 6.62 6.62 0.00 3.42
1947 2025 8.332996 ACAAATGCATGGATAGATTAAGCTAG 57.667 34.615 0.00 0.00 0.00 3.42
2213 2301 2.357760 TTTACTCCCGTGCGTGGC 60.358 61.111 0.00 0.00 0.00 5.01
2236 2324 3.512724 CCTGAAAATTGCTGGATTCTGGT 59.487 43.478 0.00 0.00 36.62 4.00
2249 2337 5.838521 TCTTGAAGCTAAACCCCTGAAAATT 59.161 36.000 0.00 0.00 0.00 1.82
2279 2367 8.492748 ACTGTATTGTTACGTGTCAAAAGTATG 58.507 33.333 0.00 0.00 0.00 2.39
2299 2390 8.421784 CAATACAATACCACTCCTGTACTGTAT 58.578 37.037 0.00 0.00 41.03 2.29
2477 2575 2.724708 GCTTGCGAGCTCGTCAGTG 61.725 63.158 34.46 25.41 45.65 3.66
2566 2679 8.190784 ACACAAAAGAAACCAAGAACAATAGAG 58.809 33.333 0.00 0.00 0.00 2.43
2570 2686 6.696411 TGACACAAAAGAAACCAAGAACAAT 58.304 32.000 0.00 0.00 0.00 2.71
2610 2727 9.899661 TCAATGTAAGTAGGCATTAATAACACT 57.100 29.630 0.00 0.00 34.01 3.55
2614 2731 9.573166 AGCATCAATGTAAGTAGGCATTAATAA 57.427 29.630 0.00 0.00 34.01 1.40
2617 2734 8.972458 TTAGCATCAATGTAAGTAGGCATTAA 57.028 30.769 0.00 0.00 34.01 1.40
2619 2736 6.016777 GCTTAGCATCAATGTAAGTAGGCATT 60.017 38.462 0.00 0.00 35.91 3.56
2620 2737 5.471456 GCTTAGCATCAATGTAAGTAGGCAT 59.529 40.000 0.00 0.00 0.00 4.40
2621 2738 4.816385 GCTTAGCATCAATGTAAGTAGGCA 59.184 41.667 0.00 0.00 0.00 4.75
2622 2739 5.059833 AGCTTAGCATCAATGTAAGTAGGC 58.940 41.667 7.07 0.00 0.00 3.93
2623 2740 7.710907 TGTTAGCTTAGCATCAATGTAAGTAGG 59.289 37.037 7.07 0.00 0.00 3.18
2626 2743 6.540189 CCTGTTAGCTTAGCATCAATGTAAGT 59.460 38.462 7.07 0.00 0.00 2.24
2627 2744 6.540189 ACCTGTTAGCTTAGCATCAATGTAAG 59.460 38.462 7.07 7.44 0.00 2.34
2633 2754 4.002982 CACACCTGTTAGCTTAGCATCAA 58.997 43.478 7.07 0.00 0.00 2.57
2652 2773 9.942850 TGTTAGACTAAAAAGATCATGATCACA 57.057 29.630 31.99 20.83 40.22 3.58
2703 2824 3.141488 CCTCCTCGGCTGCGTAGT 61.141 66.667 1.53 0.00 0.00 2.73
2920 3041 1.988956 CTCCAGCTCCAGCACCTCT 60.989 63.158 0.48 0.00 45.16 3.69
3117 3260 3.194308 GCTCGCTTGCTCTGCCTC 61.194 66.667 0.00 0.00 0.00 4.70
3156 3303 2.513753 TCCAAATCTTGATGCCAACGT 58.486 42.857 0.00 0.00 0.00 3.99
3375 3534 3.299977 CCACGACCGACAGACCCA 61.300 66.667 0.00 0.00 0.00 4.51
3405 3564 2.240500 GCGACCTTGCTAGGATGCG 61.241 63.158 21.63 19.48 45.05 4.73
3409 3568 1.617018 ATGCAGCGACCTTGCTAGGA 61.617 55.000 21.63 0.00 45.23 2.94
3472 3631 6.686378 GCACTTGATCTAGAGAGAGAGAGAGA 60.686 46.154 11.29 0.00 34.35 3.10
3473 3632 5.468072 GCACTTGATCTAGAGAGAGAGAGAG 59.532 48.000 11.29 0.00 34.35 3.20
3485 3644 4.447054 CCAAAGCTATCGCACTTGATCTAG 59.553 45.833 2.37 2.37 39.10 2.43
3585 3754 1.255667 ACCCGATCCAGTACAACGCT 61.256 55.000 0.00 0.00 0.00 5.07
3594 3763 0.585357 CGTAGTACGACCCGATCCAG 59.415 60.000 17.85 0.00 46.05 3.86
3656 3833 1.227793 CCTAGCTAGCAAGGCAGGC 60.228 63.158 18.83 0.00 0.00 4.85
3664 3841 1.828660 GAGACGGGCCTAGCTAGCA 60.829 63.158 18.83 1.89 0.00 3.49
3789 4011 1.135199 GGAAAGGCGAGTCGACACATA 60.135 52.381 22.73 0.00 37.34 2.29
3790 4012 0.389948 GGAAAGGCGAGTCGACACAT 60.390 55.000 22.73 5.63 37.34 3.21
3791 4013 1.006571 GGAAAGGCGAGTCGACACA 60.007 57.895 22.73 0.00 37.34 3.72
3792 4014 1.737008 GGGAAAGGCGAGTCGACAC 60.737 63.158 22.73 11.03 37.34 3.67
3793 4015 2.654877 GGGAAAGGCGAGTCGACA 59.345 61.111 22.73 0.00 37.34 4.35
3794 4016 2.125633 GGGGAAAGGCGAGTCGAC 60.126 66.667 18.61 15.20 33.59 4.20
3795 4017 2.503846 TAGGGGGAAAGGCGAGTCGA 62.504 60.000 18.61 0.00 0.00 4.20
3796 4018 1.610554 TTAGGGGGAAAGGCGAGTCG 61.611 60.000 8.54 8.54 0.00 4.18
3797 4019 0.616891 TTTAGGGGGAAAGGCGAGTC 59.383 55.000 0.00 0.00 0.00 3.36
3812 4034 4.342378 TCAGTAGATGGTAGCTGCCTTTAG 59.658 45.833 22.25 5.74 0.00 1.85
3824 4046 4.021632 CACGATCCATGATCAGTAGATGGT 60.022 45.833 11.20 11.48 38.84 3.55
3825 4047 4.492611 CACGATCCATGATCAGTAGATGG 58.507 47.826 0.09 3.57 38.84 3.51
3826 4048 3.925299 GCACGATCCATGATCAGTAGATG 59.075 47.826 0.09 0.00 38.84 2.90
3828 4050 2.958355 TGCACGATCCATGATCAGTAGA 59.042 45.455 0.09 0.00 38.84 2.59
3829 4051 3.375782 TGCACGATCCATGATCAGTAG 57.624 47.619 0.09 0.00 38.84 2.57
3830 4052 3.118811 TGTTGCACGATCCATGATCAGTA 60.119 43.478 0.09 0.00 38.84 2.74
3832 4054 2.282407 TGTTGCACGATCCATGATCAG 58.718 47.619 0.09 0.00 38.84 2.90
3833 4055 2.399916 TGTTGCACGATCCATGATCA 57.600 45.000 0.00 0.00 38.84 2.92
3834 4056 6.760298 AGATATATGTTGCACGATCCATGATC 59.240 38.462 0.00 0.00 35.88 2.92
3835 4057 6.647229 AGATATATGTTGCACGATCCATGAT 58.353 36.000 0.00 0.00 0.00 2.45
3836 4058 6.041423 AGATATATGTTGCACGATCCATGA 57.959 37.500 0.00 0.00 0.00 3.07
3837 4059 6.402875 CCAAGATATATGTTGCACGATCCATG 60.403 42.308 15.44 0.00 30.44 3.66
3838 4060 5.645067 CCAAGATATATGTTGCACGATCCAT 59.355 40.000 15.44 0.00 30.44 3.41
3839 4061 4.996758 CCAAGATATATGTTGCACGATCCA 59.003 41.667 15.44 0.00 30.44 3.41
3840 4062 4.393062 CCCAAGATATATGTTGCACGATCC 59.607 45.833 15.44 0.00 30.44 3.36
3845 4089 8.850156 ACTTAATTCCCAAGATATATGTTGCAC 58.150 33.333 15.44 0.00 30.44 4.57
3879 4123 8.783093 CCTCTTTTGAAATGTATCAGTGTTGTA 58.217 33.333 0.00 0.00 0.00 2.41
3880 4124 7.502226 TCCTCTTTTGAAATGTATCAGTGTTGT 59.498 33.333 0.00 0.00 0.00 3.32
3883 4127 8.463930 TTTCCTCTTTTGAAATGTATCAGTGT 57.536 30.769 0.00 0.00 0.00 3.55
3884 4128 9.565213 GATTTCCTCTTTTGAAATGTATCAGTG 57.435 33.333 3.19 0.00 41.29 3.66
3885 4129 9.300681 TGATTTCCTCTTTTGAAATGTATCAGT 57.699 29.630 3.19 0.00 41.29 3.41
3888 4132 9.358872 GGTTGATTTCCTCTTTTGAAATGTATC 57.641 33.333 3.19 0.00 41.29 2.24
3908 4152 4.914312 CGTATTGTACGTTGTGGTTGAT 57.086 40.909 0.00 0.00 46.41 2.57
3923 4167 4.391830 AGTGGCTGATGTGTAAACGTATTG 59.608 41.667 0.00 0.00 0.00 1.90
3928 4172 2.688507 AGAGTGGCTGATGTGTAAACG 58.311 47.619 0.00 0.00 0.00 3.60
3930 4174 5.939764 AGATAGAGTGGCTGATGTGTAAA 57.060 39.130 0.00 0.00 0.00 2.01
3940 4184 8.312669 AGTTTTATCAGTTAGATAGAGTGGCT 57.687 34.615 0.00 0.00 40.20 4.75
3966 4210 1.341209 TCAATGCGCGAGGTATCATCT 59.659 47.619 12.10 0.00 0.00 2.90
3967 4211 1.723542 CTCAATGCGCGAGGTATCATC 59.276 52.381 12.10 0.00 0.00 2.92
3986 4230 6.651225 GTCTATTAAGTCTGGTTTTCTGTGCT 59.349 38.462 0.00 0.00 0.00 4.40
3987 4231 6.426937 TGTCTATTAAGTCTGGTTTTCTGTGC 59.573 38.462 0.00 0.00 0.00 4.57
3988 4232 7.962964 TGTCTATTAAGTCTGGTTTTCTGTG 57.037 36.000 0.00 0.00 0.00 3.66
3989 4233 8.974060 TTTGTCTATTAAGTCTGGTTTTCTGT 57.026 30.769 0.00 0.00 0.00 3.41
3990 4234 9.831737 CATTTGTCTATTAAGTCTGGTTTTCTG 57.168 33.333 0.00 0.00 0.00 3.02
3991 4235 8.515414 GCATTTGTCTATTAAGTCTGGTTTTCT 58.485 33.333 0.00 0.00 0.00 2.52
3992 4236 8.296713 TGCATTTGTCTATTAAGTCTGGTTTTC 58.703 33.333 0.00 0.00 0.00 2.29
3995 4239 7.759489 TTGCATTTGTCTATTAAGTCTGGTT 57.241 32.000 0.00 0.00 0.00 3.67
3996 4240 7.394359 ACATTGCATTTGTCTATTAAGTCTGGT 59.606 33.333 0.00 0.00 0.00 4.00
3997 4241 7.765307 ACATTGCATTTGTCTATTAAGTCTGG 58.235 34.615 0.00 0.00 0.00 3.86
4039 4295 5.029807 TGAGAGACAACATGGTTAACACA 57.970 39.130 8.10 3.64 0.00 3.72
4040 4296 4.083802 GCTGAGAGACAACATGGTTAACAC 60.084 45.833 8.10 0.00 0.00 3.32
4092 4348 7.320399 AGACATGAGACATACACGTTTCATAA 58.680 34.615 0.00 0.00 38.33 1.90
4093 4349 6.863275 AGACATGAGACATACACGTTTCATA 58.137 36.000 0.00 0.00 38.33 2.15
4095 4351 5.134202 AGACATGAGACATACACGTTTCA 57.866 39.130 0.00 0.00 34.83 2.69
4096 4352 5.230306 GCTAGACATGAGACATACACGTTTC 59.770 44.000 0.00 0.00 0.00 2.78
4101 4387 4.655762 TGGCTAGACATGAGACATACAC 57.344 45.455 0.00 0.00 0.00 2.90
4130 4416 5.590145 TGACATGATGTGTTTGTGGAAAAG 58.410 37.500 1.23 0.00 42.36 2.27
4132 4418 5.068855 ACATGACATGATGTGTTTGTGGAAA 59.931 36.000 22.19 0.00 42.36 3.13
4135 4421 4.508461 ACATGACATGATGTGTTTGTGG 57.492 40.909 22.19 0.00 42.36 4.17
4144 4430 9.570488 CTCTGTATCTGTATACATGACATGATG 57.430 37.037 22.19 0.00 45.33 3.07
4147 4433 9.755804 AAACTCTGTATCTGTATACATGACATG 57.244 33.333 14.02 14.02 45.33 3.21
4192 4478 0.251209 TCTCTGAGCTACGGGTGTGT 60.251 55.000 0.00 0.00 0.00 3.72


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.