Multiple sequence alignment - TraesCS2D01G549800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G549800 chr2D 100.000 2384 0 0 1 2384 625389157 625391540 0.000000e+00 4403
1 TraesCS2D01G549800 chr2D 89.739 536 32 10 887 1413 625190704 625191225 0.000000e+00 664
2 TraesCS2D01G549800 chr2D 87.477 551 43 19 350 887 625390043 625389506 1.570000e-171 612
3 TraesCS2D01G549800 chr2D 94.000 350 19 2 1 349 625190359 625190707 1.620000e-146 529
4 TraesCS2D01G549800 chr2D 94.012 334 18 2 350 683 358591882 358591551 2.730000e-139 505
5 TraesCS2D01G549800 chr2D 96.947 262 7 1 1468 1728 367231161 367230900 2.810000e-119 438
6 TraesCS2D01G549800 chr2D 96.226 265 9 1 1467 1730 465158989 465158725 1.310000e-117 433
7 TraesCS2D01G549800 chr2D 88.761 347 24 12 562 896 358591550 358591893 6.130000e-111 411
8 TraesCS2D01G549800 chr2D 83.493 418 51 16 997 1408 625109651 625110056 8.050000e-100 374
9 TraesCS2D01G549800 chr2D 83.373 415 53 11 993 1403 625331352 625331754 1.040000e-98 370
10 TraesCS2D01G549800 chr2D 82.547 424 57 15 981 1399 624790318 624790729 8.100000e-95 357
11 TraesCS2D01G549800 chr2D 88.462 286 22 8 617 893 154411854 154411571 3.800000e-88 335
12 TraesCS2D01G549800 chr2D 83.125 160 16 8 740 888 56230255 56230414 4.130000e-28 135
13 TraesCS2D01G549800 chrUn 90.351 570 40 12 1821 2383 319722204 319722765 0.000000e+00 734
14 TraesCS2D01G549800 chrUn 90.351 570 40 12 1821 2383 319749345 319749906 0.000000e+00 734
15 TraesCS2D01G549800 chrUn 90.351 570 40 12 1821 2383 329303930 329304491 0.000000e+00 734
16 TraesCS2D01G549800 chr2B 90.351 570 40 12 1821 2383 15320851 15321412 0.000000e+00 734
17 TraesCS2D01G549800 chr2B 88.454 511 31 11 887 1372 767405965 767406472 2.040000e-165 592
18 TraesCS2D01G549800 chr2B 90.625 352 25 5 1 349 767405622 767405968 6.000000e-126 460
19 TraesCS2D01G549800 chr2B 83.023 430 53 14 980 1401 767379181 767379598 2.890000e-99 372
20 TraesCS2D01G549800 chr2B 87.937 315 25 10 587 889 461167624 461167311 2.250000e-95 359
21 TraesCS2D01G549800 chr2B 87.248 298 23 11 608 892 540993315 540993610 2.290000e-85 326
22 TraesCS2D01G549800 chr2B 84.049 163 23 3 1842 2002 15322061 15321900 1.140000e-33 154
23 TraesCS2D01G549800 chr6D 90.385 572 27 18 350 896 265216329 265215761 0.000000e+00 726
24 TraesCS2D01G549800 chr6D 88.414 561 41 12 350 888 265215772 265216330 0.000000e+00 654
25 TraesCS2D01G549800 chr6D 86.364 176 21 3 1842 2015 426893535 426893709 3.130000e-44 189
26 TraesCS2D01G549800 chr7D 90.108 556 34 14 350 891 536310464 536309916 0.000000e+00 702
27 TraesCS2D01G549800 chr7D 89.350 554 36 17 350 888 536309920 536310465 0.000000e+00 675
28 TraesCS2D01G549800 chr7D 86.364 176 21 3 1842 2015 156768919 156769093 3.130000e-44 189
29 TraesCS2D01G549800 chr4A 84.683 568 37 30 347 896 146657797 146658332 2.720000e-144 521
30 TraesCS2D01G549800 chr4A 78.966 290 40 10 2112 2381 655670972 655670684 6.770000e-41 178
31 TraesCS2D01G549800 chr1D 84.425 565 35 32 355 896 223923025 223922491 7.600000e-140 507
32 TraesCS2D01G549800 chr1D 97.358 265 5 2 1468 1730 180857966 180858230 1.300000e-122 449
33 TraesCS2D01G549800 chr1D 95.849 265 9 2 1468 1731 263568576 263568313 6.090000e-116 427
34 TraesCS2D01G549800 chr1D 95.849 265 10 1 1467 1730 375851898 375851634 6.090000e-116 427
35 TraesCS2D01G549800 chr1D 90.580 276 19 5 614 888 414928001 414928270 2.250000e-95 359
36 TraesCS2D01G549800 chr1D 86.364 176 21 3 1842 2015 296591950 296591776 3.130000e-44 189
37 TraesCS2D01G549800 chr2A 91.977 349 24 2 4 349 756929762 756929415 9.910000e-134 486
38 TraesCS2D01G549800 chr2A 89.264 326 24 5 898 1223 756929140 756928826 4.770000e-107 398
39 TraesCS2D01G549800 chr2A 91.011 178 16 0 122 299 756015655 756015832 8.520000e-60 241
40 TraesCS2D01G549800 chr2A 85.946 185 13 10 122 300 756001659 756001836 4.050000e-43 185
41 TraesCS2D01G549800 chr2A 84.795 171 17 6 732 893 39885727 39885557 1.900000e-36 163
42 TraesCS2D01G549800 chr1B 92.690 342 15 7 350 683 323442298 323441959 3.560000e-133 484
43 TraesCS2D01G549800 chr1B 87.390 341 28 10 563 888 323441959 323442299 6.220000e-101 377
44 TraesCS2D01G549800 chr1B 78.571 252 41 12 2116 2355 1493014 1492764 1.140000e-33 154
45 TraesCS2D01G549800 chr4D 96.604 265 7 2 1467 1730 300755039 300754776 2.810000e-119 438
46 TraesCS2D01G549800 chr4D 96.212 264 9 1 1468 1730 326116676 326116413 4.710000e-117 431
47 TraesCS2D01G549800 chr4D 95.865 266 9 2 1467 1730 49656926 49656661 1.690000e-116 429
48 TraesCS2D01G549800 chr5D 96.226 265 9 1 1467 1730 257351907 257351643 1.310000e-117 433
49 TraesCS2D01G549800 chr5D 88.552 297 25 7 594 888 339983988 339984277 3.770000e-93 351
50 TraesCS2D01G549800 chr5D 87.544 281 28 5 2110 2384 356626143 356625864 3.820000e-83 318
51 TraesCS2D01G549800 chr5A 89.789 284 17 9 614 887 667930357 667930638 1.050000e-93 353
52 TraesCS2D01G549800 chr5A 89.510 286 18 9 614 889 59194580 59194297 3.770000e-93 351
53 TraesCS2D01G549800 chr3B 88.129 278 20 9 632 898 13103806 13103531 3.820000e-83 318
54 TraesCS2D01G549800 chr5B 87.234 282 28 4 2110 2384 421462659 421462379 4.950000e-82 315
55 TraesCS2D01G549800 chr7A 85.609 271 28 7 2122 2384 716318732 716318465 8.400000e-70 274
56 TraesCS2D01G549800 chr7A 79.747 158 16 6 2235 2381 85593491 85593643 1.510000e-17 100
57 TraesCS2D01G549800 chr7B 83.429 175 28 1 1842 2015 674059595 674059769 6.820000e-36 161


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G549800 chr2D 625389157 625391540 2383 False 4403.0 4403 100.0000 1 2384 1 chr2D.!!$F6 2383
1 TraesCS2D01G549800 chr2D 625389506 625390043 537 True 612.0 612 87.4770 350 887 1 chr2D.!!$R5 537
2 TraesCS2D01G549800 chr2D 625190359 625191225 866 False 596.5 664 91.8695 1 1413 2 chr2D.!!$F7 1412
3 TraesCS2D01G549800 chrUn 319722204 319722765 561 False 734.0 734 90.3510 1821 2383 1 chrUn.!!$F1 562
4 TraesCS2D01G549800 chrUn 319749345 319749906 561 False 734.0 734 90.3510 1821 2383 1 chrUn.!!$F2 562
5 TraesCS2D01G549800 chrUn 329303930 329304491 561 False 734.0 734 90.3510 1821 2383 1 chrUn.!!$F3 562
6 TraesCS2D01G549800 chr2B 15320851 15321412 561 False 734.0 734 90.3510 1821 2383 1 chr2B.!!$F1 562
7 TraesCS2D01G549800 chr2B 767405622 767406472 850 False 526.0 592 89.5395 1 1372 2 chr2B.!!$F4 1371
8 TraesCS2D01G549800 chr6D 265215761 265216329 568 True 726.0 726 90.3850 350 896 1 chr6D.!!$R1 546
9 TraesCS2D01G549800 chr6D 265215772 265216330 558 False 654.0 654 88.4140 350 888 1 chr6D.!!$F1 538
10 TraesCS2D01G549800 chr7D 536309916 536310464 548 True 702.0 702 90.1080 350 891 1 chr7D.!!$R1 541
11 TraesCS2D01G549800 chr7D 536309920 536310465 545 False 675.0 675 89.3500 350 888 1 chr7D.!!$F2 538
12 TraesCS2D01G549800 chr4A 146657797 146658332 535 False 521.0 521 84.6830 347 896 1 chr4A.!!$F1 549
13 TraesCS2D01G549800 chr1D 223922491 223923025 534 True 507.0 507 84.4250 355 896 1 chr1D.!!$R1 541
14 TraesCS2D01G549800 chr2A 756928826 756929762 936 True 442.0 486 90.6205 4 1223 2 chr2A.!!$R2 1219

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
136 142 0.652592 CCGATGATTCTTGGCGTGTC 59.347 55.0 0.0 0.0 0.0 3.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1463 1823 0.032217 ACGGACCGGGGGAGTATTAA 60.032 55.0 20.0 0.0 0.0 1.4 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 3.149899 CTCGCAGGCATGAGAGTTT 57.850 52.632 21.82 0.00 45.31 2.66
30 31 3.614616 CAGGCATGAGAGTTTACGACTTC 59.385 47.826 0.00 0.00 39.19 3.01
135 141 1.369091 GCCGATGATTCTTGGCGTGT 61.369 55.000 0.00 0.00 37.81 4.49
136 142 0.652592 CCGATGATTCTTGGCGTGTC 59.347 55.000 0.00 0.00 0.00 3.67
331 338 2.155539 GCACAAACCGCAATTAAAGCTG 59.844 45.455 0.00 0.00 0.00 4.24
471 480 5.953183 TGCAACACTTCATTTATTAGGCTG 58.047 37.500 0.00 0.00 0.00 4.85
574 592 6.712179 TCATTTATTGCTTGCCACATCATA 57.288 33.333 0.00 0.00 0.00 2.15
763 800 4.970662 ACATCACACATATCAAGGCAAC 57.029 40.909 0.00 0.00 0.00 4.17
828 867 9.784376 ATACACATATGTTACTCCCCACTATAT 57.216 33.333 5.37 0.00 40.48 0.86
829 868 7.907389 ACACATATGTTACTCCCCACTATATG 58.093 38.462 5.37 0.00 34.46 1.78
830 869 7.733047 ACACATATGTTACTCCCCACTATATGA 59.267 37.037 5.37 0.00 34.46 2.15
833 872 6.919775 ATGTTACTCCCCACTATATGAGTC 57.080 41.667 0.00 0.00 38.85 3.36
834 873 5.145564 TGTTACTCCCCACTATATGAGTCC 58.854 45.833 0.00 0.00 38.85 3.85
835 874 3.993658 ACTCCCCACTATATGAGTCCA 57.006 47.619 0.00 0.00 35.64 4.02
836 875 4.493819 ACTCCCCACTATATGAGTCCAT 57.506 45.455 0.00 0.00 35.64 3.41
839 878 5.076598 ACTCCCCACTATATGAGTCCATACT 59.923 44.000 0.00 0.00 38.02 2.12
841 880 6.017192 TCCCCACTATATGAGTCCATACTTC 58.983 44.000 0.00 0.00 38.02 3.01
858 906 3.886123 ACTTCCATGCCCATGTTACTAC 58.114 45.455 7.42 0.00 37.11 2.73
871 922 8.804204 GCCCATGTTACTACTCTATGTTACTAT 58.196 37.037 0.00 0.00 0.00 2.12
905 1223 6.073440 GCTAGTCTTCTAGAGTCCAGTATTCG 60.073 46.154 6.47 0.00 44.52 3.34
990 1312 2.202492 GCGCGCGAGAGAGAGAAA 60.202 61.111 37.18 0.00 31.43 2.52
995 1317 1.131504 GCGCGAGAGAGAGAAAGAGAA 59.868 52.381 12.10 0.00 0.00 2.87
1071 1424 1.224592 CAGCGCCCAATACCTCCTT 59.775 57.895 2.29 0.00 0.00 3.36
1100 1453 2.679837 TGGCCGTAGTTCGTAAGTCTAG 59.320 50.000 0.00 0.00 37.94 2.43
1101 1454 2.680339 GGCCGTAGTTCGTAAGTCTAGT 59.320 50.000 0.00 0.00 37.94 2.57
1102 1455 3.242576 GGCCGTAGTTCGTAAGTCTAGTC 60.243 52.174 0.00 0.00 37.94 2.59
1103 1456 3.620821 GCCGTAGTTCGTAAGTCTAGTCT 59.379 47.826 0.00 0.00 37.94 3.24
1104 1457 4.094146 GCCGTAGTTCGTAAGTCTAGTCTT 59.906 45.833 7.40 7.40 37.94 3.01
1105 1458 5.726413 GCCGTAGTTCGTAAGTCTAGTCTTC 60.726 48.000 5.47 0.00 37.94 2.87
1115 1468 3.940319 AGTCTAGTCTTCGTCTACAGCA 58.060 45.455 0.00 0.00 0.00 4.41
1227 1583 3.687102 CCGGGGTGTCACTACGCA 61.687 66.667 12.34 0.00 37.88 5.24
1230 1586 3.110178 GGGTGTCACTACGCACGC 61.110 66.667 2.35 0.00 40.36 5.34
1252 1608 2.031163 GCCGTGACTTGGAGCTGT 59.969 61.111 0.00 0.00 0.00 4.40
1263 1619 3.272334 GAGCTGTTATGGGCGCCG 61.272 66.667 22.54 5.48 0.00 6.46
1304 1660 0.462047 GGACAGGTCGCCATAACCAG 60.462 60.000 0.00 0.00 39.39 4.00
1356 1712 2.159099 CCGCCACATGCTAACTTCTCTA 60.159 50.000 0.00 0.00 38.05 2.43
1372 1728 6.195700 ACTTCTCTATCCAAGGTTAGTGCTA 58.804 40.000 4.58 0.00 0.00 3.49
1394 1754 3.559238 ACAATTCTAGCGCCACTTTTG 57.441 42.857 2.29 6.10 0.00 2.44
1403 1763 1.720852 GCGCCACTTTTGCATTTAGTG 59.279 47.619 13.50 13.50 39.13 2.74
1413 1773 1.985159 TGCATTTAGTGACAGGGGTCT 59.015 47.619 0.00 0.00 44.61 3.85
1414 1774 2.375174 TGCATTTAGTGACAGGGGTCTT 59.625 45.455 0.00 0.00 44.61 3.01
1415 1775 3.181434 TGCATTTAGTGACAGGGGTCTTT 60.181 43.478 0.00 0.00 44.61 2.52
1416 1776 3.826729 GCATTTAGTGACAGGGGTCTTTT 59.173 43.478 0.00 0.00 44.61 2.27
1417 1777 4.280929 GCATTTAGTGACAGGGGTCTTTTT 59.719 41.667 0.00 0.00 44.61 1.94
1418 1778 5.564848 GCATTTAGTGACAGGGGTCTTTTTC 60.565 44.000 0.00 0.00 44.61 2.29
1419 1779 5.382664 TTTAGTGACAGGGGTCTTTTTCT 57.617 39.130 0.00 0.00 44.61 2.52
1420 1780 3.493767 AGTGACAGGGGTCTTTTTCTC 57.506 47.619 0.00 0.00 44.61 2.87
1421 1781 3.049344 AGTGACAGGGGTCTTTTTCTCT 58.951 45.455 0.00 0.00 44.61 3.10
1422 1782 3.459969 AGTGACAGGGGTCTTTTTCTCTT 59.540 43.478 0.00 0.00 44.61 2.85
1423 1783 4.079730 AGTGACAGGGGTCTTTTTCTCTTT 60.080 41.667 0.00 0.00 44.61 2.52
1424 1784 5.132144 AGTGACAGGGGTCTTTTTCTCTTTA 59.868 40.000 0.00 0.00 44.61 1.85
1425 1785 6.004574 GTGACAGGGGTCTTTTTCTCTTTAT 58.995 40.000 0.00 0.00 44.61 1.40
1426 1786 6.003950 TGACAGGGGTCTTTTTCTCTTTATG 58.996 40.000 0.00 0.00 44.61 1.90
1427 1787 6.183361 TGACAGGGGTCTTTTTCTCTTTATGA 60.183 38.462 0.00 0.00 44.61 2.15
1428 1788 6.794534 ACAGGGGTCTTTTTCTCTTTATGAT 58.205 36.000 0.00 0.00 0.00 2.45
1429 1789 7.241628 ACAGGGGTCTTTTTCTCTTTATGATT 58.758 34.615 0.00 0.00 0.00 2.57
1430 1790 7.730332 ACAGGGGTCTTTTTCTCTTTATGATTT 59.270 33.333 0.00 0.00 0.00 2.17
1431 1791 8.588472 CAGGGGTCTTTTTCTCTTTATGATTTT 58.412 33.333 0.00 0.00 0.00 1.82
1432 1792 9.159254 AGGGGTCTTTTTCTCTTTATGATTTTT 57.841 29.630 0.00 0.00 0.00 1.94
1433 1793 9.208022 GGGGTCTTTTTCTCTTTATGATTTTTG 57.792 33.333 0.00 0.00 0.00 2.44
1434 1794 9.208022 GGGTCTTTTTCTCTTTATGATTTTTGG 57.792 33.333 0.00 0.00 0.00 3.28
1435 1795 9.764363 GGTCTTTTTCTCTTTATGATTTTTGGT 57.236 29.630 0.00 0.00 0.00 3.67
1437 1797 9.677567 TCTTTTTCTCTTTATGATTTTTGGTCG 57.322 29.630 0.00 0.00 0.00 4.79
1438 1798 7.867445 TTTTCTCTTTATGATTTTTGGTCGC 57.133 32.000 0.00 0.00 0.00 5.19
1439 1799 6.567687 TTCTCTTTATGATTTTTGGTCGCA 57.432 33.333 0.00 0.00 0.00 5.10
1440 1800 5.938322 TCTCTTTATGATTTTTGGTCGCAC 58.062 37.500 0.00 0.00 0.00 5.34
1441 1801 5.054390 TCTTTATGATTTTTGGTCGCACC 57.946 39.130 0.00 0.00 39.22 5.01
1442 1802 3.479505 TTATGATTTTTGGTCGCACCG 57.520 42.857 1.66 0.00 42.58 4.94
1443 1803 1.529226 ATGATTTTTGGTCGCACCGA 58.471 45.000 0.00 0.00 42.58 4.69
1444 1804 1.529226 TGATTTTTGGTCGCACCGAT 58.471 45.000 0.00 0.00 42.58 4.18
1445 1805 1.466950 TGATTTTTGGTCGCACCGATC 59.533 47.619 0.00 0.00 42.58 3.69
1446 1806 1.466950 GATTTTTGGTCGCACCGATCA 59.533 47.619 0.00 0.00 45.54 2.92
1447 1807 0.589223 TTTTTGGTCGCACCGATCAC 59.411 50.000 0.00 0.00 46.88 3.06
1448 1808 1.231958 TTTTGGTCGCACCGATCACC 61.232 55.000 0.00 0.00 46.88 4.02
1449 1809 2.384653 TTTGGTCGCACCGATCACCA 62.385 55.000 0.00 0.00 46.88 4.17
1450 1810 2.178876 TTGGTCGCACCGATCACCAT 62.179 55.000 0.00 0.00 46.88 3.55
1451 1811 2.173669 GGTCGCACCGATCACCATG 61.174 63.158 0.00 0.00 36.93 3.66
1452 1812 1.447838 GTCGCACCGATCACCATGT 60.448 57.895 0.00 0.00 38.42 3.21
1453 1813 1.153647 TCGCACCGATCACCATGTC 60.154 57.895 0.00 0.00 0.00 3.06
1454 1814 2.173669 CGCACCGATCACCATGTCC 61.174 63.158 0.00 0.00 0.00 4.02
1455 1815 1.819632 GCACCGATCACCATGTCCC 60.820 63.158 0.00 0.00 0.00 4.46
1456 1816 1.601703 CACCGATCACCATGTCCCA 59.398 57.895 0.00 0.00 0.00 4.37
1457 1817 0.181114 CACCGATCACCATGTCCCAT 59.819 55.000 0.00 0.00 0.00 4.00
1458 1818 0.181114 ACCGATCACCATGTCCCATG 59.819 55.000 0.00 0.00 0.00 3.66
1459 1819 0.181114 CCGATCACCATGTCCCATGT 59.819 55.000 3.75 0.00 0.00 3.21
1460 1820 1.408683 CCGATCACCATGTCCCATGTT 60.409 52.381 3.75 0.00 0.00 2.71
1461 1821 2.368439 CGATCACCATGTCCCATGTTT 58.632 47.619 3.75 0.00 0.00 2.83
1462 1822 2.097954 CGATCACCATGTCCCATGTTTG 59.902 50.000 3.75 1.30 0.00 2.93
1463 1823 2.673775 TCACCATGTCCCATGTTTGT 57.326 45.000 3.75 0.00 0.00 2.83
1464 1824 2.956132 TCACCATGTCCCATGTTTGTT 58.044 42.857 3.75 0.00 0.00 2.83
1465 1825 4.105754 TCACCATGTCCCATGTTTGTTA 57.894 40.909 3.75 0.00 0.00 2.41
1466 1826 4.474394 TCACCATGTCCCATGTTTGTTAA 58.526 39.130 3.75 0.00 0.00 2.01
1467 1827 5.083122 TCACCATGTCCCATGTTTGTTAAT 58.917 37.500 3.75 0.00 0.00 1.40
1468 1828 6.249192 TCACCATGTCCCATGTTTGTTAATA 58.751 36.000 3.75 0.00 0.00 0.98
1469 1829 6.151985 TCACCATGTCCCATGTTTGTTAATAC 59.848 38.462 3.75 0.00 0.00 1.89
1470 1830 6.152661 CACCATGTCCCATGTTTGTTAATACT 59.847 38.462 3.75 0.00 0.00 2.12
1471 1831 6.377146 ACCATGTCCCATGTTTGTTAATACTC 59.623 38.462 3.75 0.00 0.00 2.59
1472 1832 6.183360 CCATGTCCCATGTTTGTTAATACTCC 60.183 42.308 3.75 0.00 0.00 3.85
1473 1833 5.258051 TGTCCCATGTTTGTTAATACTCCC 58.742 41.667 0.00 0.00 0.00 4.30
1474 1834 4.643334 GTCCCATGTTTGTTAATACTCCCC 59.357 45.833 0.00 0.00 0.00 4.81
1475 1835 3.958147 CCCATGTTTGTTAATACTCCCCC 59.042 47.826 0.00 0.00 0.00 5.40
1476 1836 3.630312 CCATGTTTGTTAATACTCCCCCG 59.370 47.826 0.00 0.00 0.00 5.73
1477 1837 3.353370 TGTTTGTTAATACTCCCCCGG 57.647 47.619 0.00 0.00 0.00 5.73
1478 1838 2.643801 TGTTTGTTAATACTCCCCCGGT 59.356 45.455 0.00 0.00 0.00 5.28
1479 1839 3.273434 GTTTGTTAATACTCCCCCGGTC 58.727 50.000 0.00 0.00 0.00 4.79
1480 1840 1.499368 TGTTAATACTCCCCCGGTCC 58.501 55.000 0.00 0.00 0.00 4.46
1481 1841 0.390492 GTTAATACTCCCCCGGTCCG 59.610 60.000 3.60 3.60 0.00 4.79
1482 1842 0.032217 TTAATACTCCCCCGGTCCGT 60.032 55.000 11.06 0.00 0.00 4.69
1483 1843 0.032217 TAATACTCCCCCGGTCCGTT 60.032 55.000 11.06 0.00 0.00 4.44
1484 1844 0.911045 AATACTCCCCCGGTCCGTTT 60.911 55.000 11.06 0.00 0.00 3.60
1485 1845 0.911045 ATACTCCCCCGGTCCGTTTT 60.911 55.000 11.06 0.00 0.00 2.43
1486 1846 0.252012 TACTCCCCCGGTCCGTTTTA 60.252 55.000 11.06 0.00 0.00 1.52
1487 1847 1.078918 CTCCCCCGGTCCGTTTTAC 60.079 63.158 11.06 0.00 0.00 2.01
1488 1848 1.536174 TCCCCCGGTCCGTTTTACT 60.536 57.895 11.06 0.00 0.00 2.24
1489 1849 1.078918 CCCCCGGTCCGTTTTACTC 60.079 63.158 11.06 0.00 0.00 2.59
1490 1850 1.078918 CCCCGGTCCGTTTTACTCC 60.079 63.158 11.06 0.00 0.00 3.85
1491 1851 1.446618 CCCGGTCCGTTTTACTCCG 60.447 63.158 11.06 0.00 40.72 4.63
1492 1852 2.096442 CCGGTCCGTTTTACTCCGC 61.096 63.158 11.06 0.00 39.87 5.54
1493 1853 2.438954 CGGTCCGTTTTACTCCGCG 61.439 63.158 2.08 0.00 35.01 6.46
1494 1854 1.373371 GGTCCGTTTTACTCCGCGT 60.373 57.895 4.92 0.00 0.00 6.01
1495 1855 0.109319 GGTCCGTTTTACTCCGCGTA 60.109 55.000 4.92 0.00 0.00 4.42
1496 1856 1.469767 GGTCCGTTTTACTCCGCGTAT 60.470 52.381 4.92 0.00 0.00 3.06
1497 1857 2.223479 GGTCCGTTTTACTCCGCGTATA 60.223 50.000 4.92 0.00 0.00 1.47
1498 1858 3.434637 GTCCGTTTTACTCCGCGTATAA 58.565 45.455 4.92 0.00 0.00 0.98
1499 1859 3.483558 GTCCGTTTTACTCCGCGTATAAG 59.516 47.826 4.92 0.00 0.00 1.73
1500 1860 3.376859 TCCGTTTTACTCCGCGTATAAGA 59.623 43.478 4.92 0.00 0.00 2.10
1501 1861 4.104776 CCGTTTTACTCCGCGTATAAGAA 58.895 43.478 4.92 0.00 0.00 2.52
1502 1862 4.741676 CCGTTTTACTCCGCGTATAAGAAT 59.258 41.667 4.92 0.00 0.00 2.40
1503 1863 5.232838 CCGTTTTACTCCGCGTATAAGAATT 59.767 40.000 4.92 0.00 0.00 2.17
1504 1864 6.118195 CGTTTTACTCCGCGTATAAGAATTG 58.882 40.000 4.92 0.00 0.00 2.32
1505 1865 6.237648 CGTTTTACTCCGCGTATAAGAATTGT 60.238 38.462 4.92 0.00 0.00 2.71
1506 1866 6.817270 TTTACTCCGCGTATAAGAATTGTC 57.183 37.500 4.92 0.00 0.00 3.18
1507 1867 4.650754 ACTCCGCGTATAAGAATTGTCT 57.349 40.909 4.92 0.00 34.72 3.41
1508 1868 4.360563 ACTCCGCGTATAAGAATTGTCTG 58.639 43.478 4.92 0.00 33.05 3.51
1509 1869 4.097437 ACTCCGCGTATAAGAATTGTCTGA 59.903 41.667 4.92 0.00 33.05 3.27
1510 1870 5.001237 TCCGCGTATAAGAATTGTCTGAA 57.999 39.130 4.92 0.00 33.05 3.02
1511 1871 5.041287 TCCGCGTATAAGAATTGTCTGAAG 58.959 41.667 4.92 0.00 33.05 3.02
1512 1872 4.804139 CCGCGTATAAGAATTGTCTGAAGT 59.196 41.667 4.92 0.00 33.05 3.01
1513 1873 5.051641 CCGCGTATAAGAATTGTCTGAAGTC 60.052 44.000 4.92 0.00 33.05 3.01
1514 1874 5.515270 CGCGTATAAGAATTGTCTGAAGTCA 59.485 40.000 0.00 0.00 33.05 3.41
1515 1875 6.034577 CGCGTATAAGAATTGTCTGAAGTCAA 59.965 38.462 0.00 0.00 33.05 3.18
1516 1876 7.394872 GCGTATAAGAATTGTCTGAAGTCAAG 58.605 38.462 0.00 0.00 33.05 3.02
1517 1877 7.464710 GCGTATAAGAATTGTCTGAAGTCAAGG 60.465 40.741 0.00 0.00 33.05 3.61
1518 1878 7.545965 CGTATAAGAATTGTCTGAAGTCAAGGT 59.454 37.037 0.00 0.00 33.05 3.50
1519 1879 9.220767 GTATAAGAATTGTCTGAAGTCAAGGTT 57.779 33.333 0.00 0.00 33.05 3.50
1520 1880 6.625873 AAGAATTGTCTGAAGTCAAGGTTC 57.374 37.500 0.00 0.00 33.05 3.62
1521 1881 5.684704 AGAATTGTCTGAAGTCAAGGTTCA 58.315 37.500 0.00 0.00 30.83 3.18
1522 1882 6.302269 AGAATTGTCTGAAGTCAAGGTTCAT 58.698 36.000 0.00 0.00 33.49 2.57
1523 1883 7.453393 AGAATTGTCTGAAGTCAAGGTTCATA 58.547 34.615 0.00 0.00 33.49 2.15
1524 1884 7.939039 AGAATTGTCTGAAGTCAAGGTTCATAA 59.061 33.333 0.00 0.00 33.49 1.90
1525 1885 8.463930 AATTGTCTGAAGTCAAGGTTCATAAA 57.536 30.769 0.00 0.00 33.49 1.40
1526 1886 7.496529 TTGTCTGAAGTCAAGGTTCATAAAG 57.503 36.000 0.00 0.00 33.49 1.85
1527 1887 6.591935 TGTCTGAAGTCAAGGTTCATAAAGT 58.408 36.000 0.00 0.00 33.49 2.66
1528 1888 7.054124 TGTCTGAAGTCAAGGTTCATAAAGTT 58.946 34.615 0.00 0.00 33.49 2.66
1529 1889 7.556275 TGTCTGAAGTCAAGGTTCATAAAGTTT 59.444 33.333 0.00 0.00 33.49 2.66
1530 1890 7.857885 GTCTGAAGTCAAGGTTCATAAAGTTTG 59.142 37.037 0.00 0.00 33.49 2.93
1531 1891 7.773224 TCTGAAGTCAAGGTTCATAAAGTTTGA 59.227 33.333 0.00 0.00 33.49 2.69
1532 1892 7.703328 TGAAGTCAAGGTTCATAAAGTTTGAC 58.297 34.615 0.00 6.98 42.72 3.18
1533 1893 6.635030 AGTCAAGGTTCATAAAGTTTGACC 57.365 37.500 10.51 1.77 43.15 4.02
1534 1894 6.126409 AGTCAAGGTTCATAAAGTTTGACCA 58.874 36.000 10.51 0.00 43.15 4.02
1535 1895 6.777580 AGTCAAGGTTCATAAAGTTTGACCAT 59.222 34.615 10.51 0.00 43.15 3.55
1536 1896 7.942341 AGTCAAGGTTCATAAAGTTTGACCATA 59.058 33.333 10.51 0.00 43.15 2.74
1537 1897 8.739972 GTCAAGGTTCATAAAGTTTGACCATAT 58.260 33.333 0.00 0.00 38.79 1.78
1538 1898 9.308000 TCAAGGTTCATAAAGTTTGACCATATT 57.692 29.630 0.00 0.00 0.00 1.28
1539 1899 9.927668 CAAGGTTCATAAAGTTTGACCATATTT 57.072 29.630 0.00 0.00 0.00 1.40
1603 1963 9.265938 CACAATATGAAAACTAAAGTCATGACG 57.734 33.333 19.85 8.45 34.01 4.35
1604 1964 7.962918 ACAATATGAAAACTAAAGTCATGACGC 59.037 33.333 19.85 0.00 34.01 5.19
1605 1965 5.940192 ATGAAAACTAAAGTCATGACGCA 57.060 34.783 19.85 8.35 36.20 5.24
1606 1966 5.940192 TGAAAACTAAAGTCATGACGCAT 57.060 34.783 19.85 12.36 36.20 4.73
1607 1967 5.927030 TGAAAACTAAAGTCATGACGCATC 58.073 37.500 19.85 11.06 36.20 3.91
1608 1968 5.700832 TGAAAACTAAAGTCATGACGCATCT 59.299 36.000 19.85 6.79 36.20 2.90
1609 1969 6.871492 TGAAAACTAAAGTCATGACGCATCTA 59.129 34.615 19.85 7.52 36.20 1.98
1610 1970 7.386573 TGAAAACTAAAGTCATGACGCATCTAA 59.613 33.333 19.85 2.63 36.20 2.10
1611 1971 7.849804 AAACTAAAGTCATGACGCATCTAAT 57.150 32.000 19.85 2.37 36.20 1.73
1612 1972 6.834959 ACTAAAGTCATGACGCATCTAATG 57.165 37.500 19.85 7.39 36.20 1.90
1613 1973 6.341316 ACTAAAGTCATGACGCATCTAATGT 58.659 36.000 19.85 7.94 36.20 2.71
1614 1974 6.818644 ACTAAAGTCATGACGCATCTAATGTT 59.181 34.615 19.85 2.19 36.20 2.71
1615 1975 5.475273 AAGTCATGACGCATCTAATGTTG 57.525 39.130 19.85 0.00 36.20 3.33
1616 1976 4.507710 AGTCATGACGCATCTAATGTTGT 58.492 39.130 19.85 0.00 36.20 3.32
1617 1977 4.937620 AGTCATGACGCATCTAATGTTGTT 59.062 37.500 19.85 0.00 36.20 2.83
1618 1978 5.023920 GTCATGACGCATCTAATGTTGTTG 58.976 41.667 10.69 0.00 0.00 3.33
1619 1979 4.934602 TCATGACGCATCTAATGTTGTTGA 59.065 37.500 0.00 0.00 0.00 3.18
1620 1980 5.585844 TCATGACGCATCTAATGTTGTTGAT 59.414 36.000 0.00 0.00 0.00 2.57
1621 1981 5.878332 TGACGCATCTAATGTTGTTGATT 57.122 34.783 0.00 0.00 0.00 2.57
1622 1982 6.252967 TGACGCATCTAATGTTGTTGATTT 57.747 33.333 0.00 0.00 0.00 2.17
1623 1983 6.676950 TGACGCATCTAATGTTGTTGATTTT 58.323 32.000 0.00 0.00 0.00 1.82
1624 1984 6.801377 TGACGCATCTAATGTTGTTGATTTTC 59.199 34.615 0.00 0.00 0.00 2.29
1625 1985 6.676950 ACGCATCTAATGTTGTTGATTTTCA 58.323 32.000 0.00 0.00 0.00 2.69
1626 1986 6.582295 ACGCATCTAATGTTGTTGATTTTCAC 59.418 34.615 0.00 0.00 0.00 3.18
1627 1987 6.581919 CGCATCTAATGTTGTTGATTTTCACA 59.418 34.615 0.00 0.00 0.00 3.58
1628 1988 7.274033 CGCATCTAATGTTGTTGATTTTCACAT 59.726 33.333 0.00 0.00 0.00 3.21
1629 1989 8.928733 GCATCTAATGTTGTTGATTTTCACATT 58.071 29.630 0.00 0.00 0.00 2.71
1632 1992 9.681692 TCTAATGTTGTTGATTTTCACATTCTG 57.318 29.630 0.00 0.00 0.00 3.02
1633 1993 9.681692 CTAATGTTGTTGATTTTCACATTCTGA 57.318 29.630 0.00 0.00 0.00 3.27
1634 1994 8.945481 AATGTTGTTGATTTTCACATTCTGAA 57.055 26.923 0.00 0.00 37.08 3.02
1635 1995 9.550406 AATGTTGTTGATTTTCACATTCTGAAT 57.450 25.926 0.00 0.00 38.74 2.57
1636 1996 8.355272 TGTTGTTGATTTTCACATTCTGAATG 57.645 30.769 24.79 24.79 44.48 2.67
1677 2037 6.866010 AAATTCGGTTAAAGTTTACGAGGT 57.134 33.333 7.97 1.32 34.85 3.85
1678 2038 6.866010 AATTCGGTTAAAGTTTACGAGGTT 57.134 33.333 7.97 5.87 34.85 3.50
1679 2039 6.866010 ATTCGGTTAAAGTTTACGAGGTTT 57.134 33.333 7.97 0.00 34.85 3.27
1680 2040 5.655893 TCGGTTAAAGTTTACGAGGTTTG 57.344 39.130 4.69 0.00 0.00 2.93
1681 2041 5.355596 TCGGTTAAAGTTTACGAGGTTTGA 58.644 37.500 4.69 0.00 0.00 2.69
1682 2042 5.234116 TCGGTTAAAGTTTACGAGGTTTGAC 59.766 40.000 4.69 0.00 0.00 3.18
1683 2043 5.234972 CGGTTAAAGTTTACGAGGTTTGACT 59.765 40.000 0.00 0.00 0.00 3.41
1684 2044 6.238184 CGGTTAAAGTTTACGAGGTTTGACTT 60.238 38.462 0.00 0.00 0.00 3.01
1685 2045 7.128331 GGTTAAAGTTTACGAGGTTTGACTTC 58.872 38.462 0.00 0.00 0.00 3.01
1686 2046 7.201635 GGTTAAAGTTTACGAGGTTTGACTTCA 60.202 37.037 0.00 0.00 0.00 3.02
1687 2047 5.986004 AAGTTTACGAGGTTTGACTTCAG 57.014 39.130 0.00 0.00 0.00 3.02
1688 2048 5.272283 AGTTTACGAGGTTTGACTTCAGA 57.728 39.130 0.00 0.00 0.00 3.27
1689 2049 5.048507 AGTTTACGAGGTTTGACTTCAGAC 58.951 41.667 0.00 0.00 0.00 3.51
1690 2050 4.659111 TTACGAGGTTTGACTTCAGACA 57.341 40.909 2.66 0.00 33.14 3.41
1691 2051 3.536956 ACGAGGTTTGACTTCAGACAA 57.463 42.857 2.66 0.00 33.14 3.18
1692 2052 3.869065 ACGAGGTTTGACTTCAGACAAA 58.131 40.909 2.66 1.04 37.36 2.83
1702 2062 6.985188 TGACTTCAGACAAACCTTATATGC 57.015 37.500 0.00 0.00 0.00 3.14
1703 2063 5.580691 TGACTTCAGACAAACCTTATATGCG 59.419 40.000 0.00 0.00 0.00 4.73
1704 2064 5.730550 ACTTCAGACAAACCTTATATGCGA 58.269 37.500 0.00 0.00 0.00 5.10
1705 2065 6.170506 ACTTCAGACAAACCTTATATGCGAA 58.829 36.000 0.00 0.00 0.00 4.70
1706 2066 6.092259 ACTTCAGACAAACCTTATATGCGAAC 59.908 38.462 0.00 0.00 0.00 3.95
1707 2067 5.730550 TCAGACAAACCTTATATGCGAACT 58.269 37.500 0.00 0.00 0.00 3.01
1708 2068 6.869695 TCAGACAAACCTTATATGCGAACTA 58.130 36.000 0.00 0.00 0.00 2.24
1709 2069 7.324935 TCAGACAAACCTTATATGCGAACTAA 58.675 34.615 0.00 0.00 0.00 2.24
1710 2070 7.820386 TCAGACAAACCTTATATGCGAACTAAA 59.180 33.333 0.00 0.00 0.00 1.85
1711 2071 8.447833 CAGACAAACCTTATATGCGAACTAAAA 58.552 33.333 0.00 0.00 0.00 1.52
1712 2072 9.005777 AGACAAACCTTATATGCGAACTAAAAA 57.994 29.630 0.00 0.00 0.00 1.94
1713 2073 9.274065 GACAAACCTTATATGCGAACTAAAAAG 57.726 33.333 0.00 0.00 0.00 2.27
1714 2074 8.241367 ACAAACCTTATATGCGAACTAAAAAGG 58.759 33.333 0.00 0.00 38.54 3.11
1715 2075 8.455682 CAAACCTTATATGCGAACTAAAAAGGA 58.544 33.333 4.87 0.00 36.56 3.36
1716 2076 7.549615 ACCTTATATGCGAACTAAAAAGGAC 57.450 36.000 4.87 0.00 36.56 3.85
1717 2077 6.541278 ACCTTATATGCGAACTAAAAAGGACC 59.459 38.462 4.87 0.00 36.56 4.46
1718 2078 6.292703 CCTTATATGCGAACTAAAAAGGACCG 60.293 42.308 0.00 0.00 35.34 4.79
1719 2079 1.515081 TGCGAACTAAAAAGGACCGG 58.485 50.000 0.00 0.00 0.00 5.28
1720 2080 1.070445 TGCGAACTAAAAAGGACCGGA 59.930 47.619 9.46 0.00 0.00 5.14
1721 2081 1.730612 GCGAACTAAAAAGGACCGGAG 59.269 52.381 9.46 0.00 0.00 4.63
1735 2095 3.527434 CGGAGGGAGTACAAACCAC 57.473 57.895 0.00 0.00 0.00 4.16
1736 2096 0.036671 CGGAGGGAGTACAAACCACC 60.037 60.000 0.00 1.38 0.00 4.61
1737 2097 0.036671 GGAGGGAGTACAAACCACCG 60.037 60.000 0.00 0.00 0.00 4.94
1738 2098 0.971386 GAGGGAGTACAAACCACCGA 59.029 55.000 0.00 0.00 0.00 4.69
1739 2099 1.553704 GAGGGAGTACAAACCACCGAT 59.446 52.381 0.00 0.00 0.00 4.18
1740 2100 1.553704 AGGGAGTACAAACCACCGATC 59.446 52.381 0.00 0.00 0.00 3.69
1741 2101 1.636988 GGAGTACAAACCACCGATCG 58.363 55.000 8.51 8.51 0.00 3.69
1742 2102 1.067354 GGAGTACAAACCACCGATCGT 60.067 52.381 15.09 0.00 0.00 3.73
1743 2103 2.164219 GGAGTACAAACCACCGATCGTA 59.836 50.000 15.09 0.00 0.00 3.43
1744 2104 3.432782 GAGTACAAACCACCGATCGTAG 58.567 50.000 15.09 5.70 0.00 3.51
1745 2105 3.084039 AGTACAAACCACCGATCGTAGA 58.916 45.455 15.09 0.00 45.75 2.59
1746 2106 2.358939 ACAAACCACCGATCGTAGAC 57.641 50.000 15.09 0.00 42.51 2.59
1747 2107 1.067354 ACAAACCACCGATCGTAGACC 60.067 52.381 15.09 0.00 42.51 3.85
1748 2108 0.171903 AAACCACCGATCGTAGACCG 59.828 55.000 15.09 0.00 42.51 4.79
1763 2123 3.981308 CCGAGCGGTTGGATTGTT 58.019 55.556 16.28 0.00 0.00 2.83
1764 2124 2.253513 CCGAGCGGTTGGATTGTTT 58.746 52.632 16.28 0.00 0.00 2.83
1765 2125 0.596082 CCGAGCGGTTGGATTGTTTT 59.404 50.000 16.28 0.00 0.00 2.43
1766 2126 1.807742 CCGAGCGGTTGGATTGTTTTA 59.192 47.619 16.28 0.00 0.00 1.52
1767 2127 2.422127 CCGAGCGGTTGGATTGTTTTAT 59.578 45.455 16.28 0.00 0.00 1.40
1768 2128 3.486875 CCGAGCGGTTGGATTGTTTTATC 60.487 47.826 16.28 0.00 0.00 1.75
1769 2129 3.680789 GAGCGGTTGGATTGTTTTATCG 58.319 45.455 0.00 0.00 0.00 2.92
1770 2130 2.422127 AGCGGTTGGATTGTTTTATCGG 59.578 45.455 0.00 0.00 0.00 4.18
1771 2131 2.478879 GCGGTTGGATTGTTTTATCGGG 60.479 50.000 0.00 0.00 0.00 5.14
1772 2132 3.011119 CGGTTGGATTGTTTTATCGGGA 58.989 45.455 0.00 0.00 0.00 5.14
1773 2133 3.440872 CGGTTGGATTGTTTTATCGGGAA 59.559 43.478 0.00 0.00 0.00 3.97
1774 2134 4.097286 CGGTTGGATTGTTTTATCGGGAAT 59.903 41.667 0.00 0.00 0.00 3.01
1775 2135 5.348164 GGTTGGATTGTTTTATCGGGAATG 58.652 41.667 0.00 0.00 0.00 2.67
1776 2136 5.348164 GTTGGATTGTTTTATCGGGAATGG 58.652 41.667 0.00 0.00 0.00 3.16
1777 2137 4.605183 TGGATTGTTTTATCGGGAATGGT 58.395 39.130 0.00 0.00 0.00 3.55
1778 2138 5.020132 TGGATTGTTTTATCGGGAATGGTT 58.980 37.500 0.00 0.00 0.00 3.67
1779 2139 5.482175 TGGATTGTTTTATCGGGAATGGTTT 59.518 36.000 0.00 0.00 0.00 3.27
1780 2140 6.014156 TGGATTGTTTTATCGGGAATGGTTTT 60.014 34.615 0.00 0.00 0.00 2.43
1781 2141 7.178628 TGGATTGTTTTATCGGGAATGGTTTTA 59.821 33.333 0.00 0.00 0.00 1.52
1782 2142 7.490079 GGATTGTTTTATCGGGAATGGTTTTAC 59.510 37.037 0.00 0.00 0.00 2.01
1783 2143 5.940595 TGTTTTATCGGGAATGGTTTTACG 58.059 37.500 0.00 0.00 0.00 3.18
1784 2144 5.472820 TGTTTTATCGGGAATGGTTTTACGT 59.527 36.000 0.00 0.00 0.00 3.57
1785 2145 5.799681 TTTATCGGGAATGGTTTTACGTC 57.200 39.130 0.00 0.00 0.00 4.34
1786 2146 1.712401 TCGGGAATGGTTTTACGTCG 58.288 50.000 0.00 0.00 0.00 5.12
1787 2147 1.000731 TCGGGAATGGTTTTACGTCGT 59.999 47.619 2.21 2.21 0.00 4.34
1788 2148 1.391144 CGGGAATGGTTTTACGTCGTC 59.609 52.381 0.00 0.00 0.00 4.20
1789 2149 2.691927 GGGAATGGTTTTACGTCGTCT 58.308 47.619 0.00 0.00 0.00 4.18
1790 2150 3.673052 CGGGAATGGTTTTACGTCGTCTA 60.673 47.826 0.00 0.00 0.00 2.59
1791 2151 4.244862 GGGAATGGTTTTACGTCGTCTAA 58.755 43.478 0.00 0.00 0.00 2.10
1792 2152 4.091945 GGGAATGGTTTTACGTCGTCTAAC 59.908 45.833 0.00 7.54 0.00 2.34
1793 2153 4.925646 GGAATGGTTTTACGTCGTCTAACT 59.074 41.667 17.02 3.67 0.00 2.24
1794 2154 5.406477 GGAATGGTTTTACGTCGTCTAACTT 59.594 40.000 17.02 8.60 0.00 2.66
1795 2155 6.073602 GGAATGGTTTTACGTCGTCTAACTTT 60.074 38.462 17.02 12.75 0.00 2.66
1796 2156 7.116233 GGAATGGTTTTACGTCGTCTAACTTTA 59.884 37.037 17.02 8.61 0.00 1.85
1797 2157 8.538409 AATGGTTTTACGTCGTCTAACTTTAT 57.462 30.769 17.02 9.90 0.00 1.40
1798 2158 7.337150 TGGTTTTACGTCGTCTAACTTTATG 57.663 36.000 17.02 0.00 0.00 1.90
1799 2159 6.128849 TGGTTTTACGTCGTCTAACTTTATGC 60.129 38.462 17.02 5.47 0.00 3.14
1800 2160 6.128849 GGTTTTACGTCGTCTAACTTTATGCA 60.129 38.462 17.02 0.00 0.00 3.96
1801 2161 7.412237 GGTTTTACGTCGTCTAACTTTATGCAT 60.412 37.037 17.02 3.79 0.00 3.96
1802 2162 6.563398 TTACGTCGTCTAACTTTATGCATG 57.437 37.500 10.16 0.00 0.00 4.06
1803 2163 4.491676 ACGTCGTCTAACTTTATGCATGT 58.508 39.130 10.16 0.00 0.00 3.21
1804 2164 4.326278 ACGTCGTCTAACTTTATGCATGTG 59.674 41.667 10.16 1.56 0.00 3.21
1805 2165 4.326278 CGTCGTCTAACTTTATGCATGTGT 59.674 41.667 10.16 2.24 0.00 3.72
1806 2166 5.498700 CGTCGTCTAACTTTATGCATGTGTC 60.499 44.000 10.16 0.00 0.00 3.67
1807 2167 5.347635 GTCGTCTAACTTTATGCATGTGTCA 59.652 40.000 10.16 0.00 0.00 3.58
1808 2168 5.929415 TCGTCTAACTTTATGCATGTGTCAA 59.071 36.000 10.16 0.00 0.00 3.18
1809 2169 6.593770 TCGTCTAACTTTATGCATGTGTCAAT 59.406 34.615 10.16 0.00 0.00 2.57
1810 2170 7.762159 TCGTCTAACTTTATGCATGTGTCAATA 59.238 33.333 10.16 0.00 0.00 1.90
1811 2171 8.551205 CGTCTAACTTTATGCATGTGTCAATAT 58.449 33.333 10.16 0.00 0.00 1.28
1870 2230 4.455533 TGTCATGGATGTTCACTTTAGTGC 59.544 41.667 5.00 0.00 45.25 4.40
1886 2246 6.980397 ACTTTAGTGCCTGAACTTGAAAAATG 59.020 34.615 0.00 0.00 0.00 2.32
1918 2278 4.406456 AGTTTCATAACTTGGCATGGACA 58.594 39.130 5.31 0.00 41.85 4.02
1936 2296 4.639755 TGGACATGCACATACGATTCAAAT 59.360 37.500 0.00 0.00 0.00 2.32
1943 2303 6.714492 TGCACATACGATTCAAATCATACAC 58.286 36.000 3.81 0.00 35.11 2.90
1961 2321 1.069090 CGTATACGCCCACCATGCT 59.931 57.895 13.08 0.00 0.00 3.79
1978 2338 1.974875 CTGACAAGGCATGCCAGCA 60.975 57.895 37.18 25.36 32.54 4.41
2023 2383 3.346035 TATGGCAGGGAGGAGGGCA 62.346 63.158 0.00 0.00 41.52 5.36
2030 2390 2.300967 GGGAGGAGGGCATGTGACA 61.301 63.158 0.00 0.00 0.00 3.58
2031 2391 1.639635 GGGAGGAGGGCATGTGACAT 61.640 60.000 0.00 0.00 0.00 3.06
2032 2392 0.465097 GGAGGAGGGCATGTGACATG 60.465 60.000 20.66 20.66 0.00 3.21
2033 2393 0.465097 GAGGAGGGCATGTGACATGG 60.465 60.000 25.22 8.86 0.00 3.66
2035 2395 0.323725 GGAGGGCATGTGACATGGTT 60.324 55.000 25.22 0.00 0.00 3.67
2036 2396 1.098050 GAGGGCATGTGACATGGTTC 58.902 55.000 25.22 10.01 0.00 3.62
2037 2397 0.700564 AGGGCATGTGACATGGTTCT 59.299 50.000 25.22 6.95 0.00 3.01
2038 2398 1.076024 AGGGCATGTGACATGGTTCTT 59.924 47.619 25.22 1.60 0.00 2.52
2039 2399 1.895131 GGGCATGTGACATGGTTCTTT 59.105 47.619 25.22 0.00 0.00 2.52
2045 2405 2.685388 TGTGACATGGTTCTTTTTGCGA 59.315 40.909 0.00 0.00 0.00 5.10
2049 2409 4.564769 TGACATGGTTCTTTTTGCGAAAAC 59.435 37.500 7.81 0.00 31.72 2.43
2052 2412 2.206750 GGTTCTTTTTGCGAAAACCCC 58.793 47.619 7.81 4.81 31.72 4.95
2053 2413 2.159014 GGTTCTTTTTGCGAAAACCCCT 60.159 45.455 7.81 0.00 31.72 4.79
2099 2459 6.258507 CCCTTGGAGAGAAACAACAAAATTTG 59.741 38.462 3.89 3.89 0.00 2.32
2101 2461 7.978975 CCTTGGAGAGAAACAACAAAATTTGTA 59.021 33.333 12.11 0.00 44.59 2.41
2102 2462 9.364989 CTTGGAGAGAAACAACAAAATTTGTAA 57.635 29.630 12.11 0.00 44.59 2.41
2235 2598 2.033911 TGCGCCCTCAGATTGCAA 59.966 55.556 4.18 0.00 31.69 4.08
2242 2605 2.947243 GCCCTCAGATTGCAAATCCTCA 60.947 50.000 1.71 0.00 0.00 3.86
2247 2610 3.129813 TCAGATTGCAAATCCTCACATGC 59.870 43.478 1.71 0.00 39.22 4.06
2327 2691 9.952188 TGAATATGTTTCAAAATAACACGTGAA 57.048 25.926 25.01 10.36 38.23 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 0.610174 AACTCTCATGCCTGCGAGAA 59.390 50.000 14.80 0.00 36.52 2.87
14 15 4.781071 GACTTCGAAGTCGTAAACTCTCA 58.219 43.478 35.23 0.00 45.11 3.27
63 65 0.521242 CAGTGCTCGCGGTTTATTGC 60.521 55.000 6.13 0.38 0.00 3.56
135 141 0.790207 GTTGCAGTCGATCAAAGCGA 59.210 50.000 0.00 0.00 35.08 4.93
136 142 0.512518 TGTTGCAGTCGATCAAAGCG 59.487 50.000 0.00 0.00 0.00 4.68
331 338 3.654414 AGTCGAAGGTGTCTTGATGAAC 58.346 45.455 0.00 0.00 32.52 3.18
471 480 7.066284 ACACATATCAAGGCAAAATGAGTCTAC 59.934 37.037 0.00 0.00 0.00 2.59
683 714 9.730705 ACATGTCTCTCTTTCTTCATTTATTGA 57.269 29.630 0.00 0.00 0.00 2.57
704 735 7.419711 AGTAACTAGCTATGTTACCACATGT 57.580 36.000 25.92 14.18 46.31 3.21
705 736 8.630917 AGTAGTAACTAGCTATGTTACCACATG 58.369 37.037 26.31 0.00 46.31 3.21
707 738 9.334947 CTAGTAGTAACTAGCTATGTTACCACA 57.665 37.037 26.31 18.52 46.53 4.17
802 839 9.784376 ATATAGTGGGGAGTAACATATGTGTAT 57.216 33.333 9.63 0.00 37.67 2.29
803 840 9.031537 CATATAGTGGGGAGTAACATATGTGTA 57.968 37.037 9.63 1.65 37.67 2.90
828 867 1.490490 GGGCATGGAAGTATGGACTCA 59.510 52.381 0.00 0.00 33.58 3.41
829 868 1.490490 TGGGCATGGAAGTATGGACTC 59.510 52.381 0.00 0.00 33.58 3.36
830 869 1.595311 TGGGCATGGAAGTATGGACT 58.405 50.000 0.00 0.00 37.59 3.85
833 872 2.369983 ACATGGGCATGGAAGTATGG 57.630 50.000 0.00 0.00 42.91 2.74
834 873 4.464008 AGTAACATGGGCATGGAAGTATG 58.536 43.478 0.00 0.00 42.91 2.39
835 874 4.796110 AGTAACATGGGCATGGAAGTAT 57.204 40.909 0.00 0.00 42.91 2.12
836 875 4.719773 AGTAGTAACATGGGCATGGAAGTA 59.280 41.667 0.00 0.00 42.91 2.24
839 878 3.780294 AGAGTAGTAACATGGGCATGGAA 59.220 43.478 0.00 0.00 42.91 3.53
841 880 3.845781 AGAGTAGTAACATGGGCATGG 57.154 47.619 0.00 0.00 42.91 3.66
871 922 6.615617 ACTCTAGAAGACTAGCCATAATGGA 58.384 40.000 0.00 0.00 43.97 3.41
877 928 4.079443 ACTGGACTCTAGAAGACTAGCCAT 60.079 45.833 0.00 0.00 43.97 4.40
990 1312 2.286872 CATTGCGCCATCTCTTTCTCT 58.713 47.619 4.18 0.00 0.00 3.10
995 1317 1.033746 CCACCATTGCGCCATCTCTT 61.034 55.000 4.18 0.00 0.00 2.85
1071 1424 3.358707 CGAACTACGGCCATACATACA 57.641 47.619 2.24 0.00 38.46 2.29
1100 1453 2.288273 ACCAGTTGCTGTAGACGAAGAC 60.288 50.000 0.00 0.00 0.00 3.01
1101 1454 1.961394 ACCAGTTGCTGTAGACGAAGA 59.039 47.619 0.00 0.00 0.00 2.87
1102 1455 2.288213 TGACCAGTTGCTGTAGACGAAG 60.288 50.000 0.00 0.00 0.00 3.79
1103 1456 1.684450 TGACCAGTTGCTGTAGACGAA 59.316 47.619 0.00 0.00 0.00 3.85
1104 1457 1.324383 TGACCAGTTGCTGTAGACGA 58.676 50.000 0.00 0.00 0.00 4.20
1105 1458 2.263077 GATGACCAGTTGCTGTAGACG 58.737 52.381 0.00 0.00 0.00 4.18
1252 1608 2.425592 CAGGATCGGCGCCCATAA 59.574 61.111 23.46 4.11 0.00 1.90
1263 1619 1.607509 CCGAGATGCATCACCAGGATC 60.608 57.143 27.81 13.66 32.57 3.36
1304 1660 4.434857 GCTCGTTGTCTTCAATCTTGTAGC 60.435 45.833 0.00 0.00 35.92 3.58
1356 1712 6.948309 AGAATTGTTTAGCACTAACCTTGGAT 59.052 34.615 0.00 0.00 0.00 3.41
1372 1728 4.298332 CAAAAGTGGCGCTAGAATTGTTT 58.702 39.130 7.64 0.00 0.00 2.83
1394 1754 2.789409 AGACCCCTGTCACTAAATGC 57.211 50.000 0.00 0.00 44.33 3.56
1403 1763 6.238648 TCATAAAGAGAAAAAGACCCCTGTC 58.761 40.000 0.00 0.00 42.09 3.51
1413 1773 7.923344 TGCGACCAAAAATCATAAAGAGAAAAA 59.077 29.630 0.00 0.00 0.00 1.94
1414 1774 7.381139 GTGCGACCAAAAATCATAAAGAGAAAA 59.619 33.333 0.00 0.00 0.00 2.29
1415 1775 6.861055 GTGCGACCAAAAATCATAAAGAGAAA 59.139 34.615 0.00 0.00 0.00 2.52
1416 1776 6.378582 GTGCGACCAAAAATCATAAAGAGAA 58.621 36.000 0.00 0.00 0.00 2.87
1417 1777 5.106317 GGTGCGACCAAAAATCATAAAGAGA 60.106 40.000 0.00 0.00 38.42 3.10
1418 1778 5.095490 GGTGCGACCAAAAATCATAAAGAG 58.905 41.667 0.00 0.00 38.42 2.85
1419 1779 4.378978 CGGTGCGACCAAAAATCATAAAGA 60.379 41.667 6.21 0.00 38.47 2.52
1420 1780 3.851403 CGGTGCGACCAAAAATCATAAAG 59.149 43.478 6.21 0.00 38.47 1.85
1421 1781 3.502595 TCGGTGCGACCAAAAATCATAAA 59.497 39.130 6.21 0.00 38.47 1.40
1422 1782 3.075148 TCGGTGCGACCAAAAATCATAA 58.925 40.909 6.21 0.00 38.47 1.90
1423 1783 2.701107 TCGGTGCGACCAAAAATCATA 58.299 42.857 6.21 0.00 38.47 2.15
1424 1784 1.529226 TCGGTGCGACCAAAAATCAT 58.471 45.000 6.21 0.00 38.47 2.45
1425 1785 1.466950 GATCGGTGCGACCAAAAATCA 59.533 47.619 6.21 0.00 39.18 2.57
1426 1786 1.466950 TGATCGGTGCGACCAAAAATC 59.533 47.619 6.21 4.18 39.18 2.17
1427 1787 1.199097 GTGATCGGTGCGACCAAAAAT 59.801 47.619 6.21 0.00 39.18 1.82
1428 1788 0.589223 GTGATCGGTGCGACCAAAAA 59.411 50.000 6.21 0.00 39.18 1.94
1429 1789 1.231958 GGTGATCGGTGCGACCAAAA 61.232 55.000 6.21 0.00 39.18 2.44
1430 1790 1.669760 GGTGATCGGTGCGACCAAA 60.670 57.895 6.21 0.00 39.18 3.28
1431 1791 2.047655 GGTGATCGGTGCGACCAA 60.048 61.111 6.21 0.00 39.18 3.67
1432 1792 2.655073 ATGGTGATCGGTGCGACCA 61.655 57.895 3.07 3.07 39.18 4.02
1433 1793 2.173669 CATGGTGATCGGTGCGACC 61.174 63.158 0.00 0.00 39.18 4.79
1434 1794 1.421410 GACATGGTGATCGGTGCGAC 61.421 60.000 0.00 0.00 39.18 5.19
1435 1795 1.153647 GACATGGTGATCGGTGCGA 60.154 57.895 0.00 0.00 41.13 5.10
1436 1796 2.173669 GGACATGGTGATCGGTGCG 61.174 63.158 0.00 0.00 0.00 5.34
1437 1797 1.819632 GGGACATGGTGATCGGTGC 60.820 63.158 0.00 0.00 0.00 5.01
1438 1798 1.601703 TGGGACATGGTGATCGGTG 59.398 57.895 0.00 0.00 0.00 4.94
1439 1799 4.145436 TGGGACATGGTGATCGGT 57.855 55.556 0.00 0.00 0.00 4.69
1451 1811 4.643334 GGGGAGTATTAACAAACATGGGAC 59.357 45.833 0.00 0.00 0.00 4.46
1452 1812 4.325501 GGGGGAGTATTAACAAACATGGGA 60.326 45.833 0.00 0.00 0.00 4.37
1453 1813 3.958147 GGGGGAGTATTAACAAACATGGG 59.042 47.826 0.00 0.00 0.00 4.00
1454 1814 3.630312 CGGGGGAGTATTAACAAACATGG 59.370 47.826 0.00 0.00 0.00 3.66
1455 1815 3.630312 CCGGGGGAGTATTAACAAACATG 59.370 47.826 0.00 0.00 0.00 3.21
1456 1816 3.267551 ACCGGGGGAGTATTAACAAACAT 59.732 43.478 6.32 0.00 0.00 2.71
1457 1817 2.643801 ACCGGGGGAGTATTAACAAACA 59.356 45.455 6.32 0.00 0.00 2.83
1458 1818 3.273434 GACCGGGGGAGTATTAACAAAC 58.727 50.000 6.32 0.00 0.00 2.93
1459 1819 2.239402 GGACCGGGGGAGTATTAACAAA 59.761 50.000 6.32 0.00 0.00 2.83
1460 1820 1.839354 GGACCGGGGGAGTATTAACAA 59.161 52.381 6.32 0.00 0.00 2.83
1461 1821 1.499368 GGACCGGGGGAGTATTAACA 58.501 55.000 6.32 0.00 0.00 2.41
1462 1822 0.390492 CGGACCGGGGGAGTATTAAC 59.610 60.000 6.32 0.00 0.00 2.01
1463 1823 0.032217 ACGGACCGGGGGAGTATTAA 60.032 55.000 20.00 0.00 0.00 1.40
1464 1824 0.032217 AACGGACCGGGGGAGTATTA 60.032 55.000 20.00 0.00 0.00 0.98
1465 1825 0.911045 AAACGGACCGGGGGAGTATT 60.911 55.000 20.00 0.00 0.00 1.89
1466 1826 0.911045 AAAACGGACCGGGGGAGTAT 60.911 55.000 20.00 0.00 0.00 2.12
1467 1827 0.252012 TAAAACGGACCGGGGGAGTA 60.252 55.000 20.00 0.00 0.00 2.59
1468 1828 1.536174 TAAAACGGACCGGGGGAGT 60.536 57.895 20.00 0.00 0.00 3.85
1469 1829 1.078918 GTAAAACGGACCGGGGGAG 60.079 63.158 20.00 0.00 0.00 4.30
1470 1830 1.536174 AGTAAAACGGACCGGGGGA 60.536 57.895 20.00 0.00 0.00 4.81
1471 1831 1.078918 GAGTAAAACGGACCGGGGG 60.079 63.158 20.00 0.00 0.00 5.40
1472 1832 1.078918 GGAGTAAAACGGACCGGGG 60.079 63.158 20.00 0.00 0.00 5.73
1473 1833 1.446618 CGGAGTAAAACGGACCGGG 60.447 63.158 20.00 0.00 39.92 5.73
1474 1834 2.096442 GCGGAGTAAAACGGACCGG 61.096 63.158 20.00 0.00 43.15 5.28
1475 1835 2.438954 CGCGGAGTAAAACGGACCG 61.439 63.158 13.61 13.61 45.26 4.79
1476 1836 0.109319 TACGCGGAGTAAAACGGACC 60.109 55.000 12.47 0.00 31.26 4.46
1477 1837 1.913317 ATACGCGGAGTAAAACGGAC 58.087 50.000 12.47 0.00 39.04 4.79
1478 1838 3.376859 TCTTATACGCGGAGTAAAACGGA 59.623 43.478 12.47 0.00 39.04 4.69
1479 1839 3.694734 TCTTATACGCGGAGTAAAACGG 58.305 45.455 12.47 0.00 39.04 4.44
1480 1840 5.878261 ATTCTTATACGCGGAGTAAAACG 57.122 39.130 12.47 0.00 39.04 3.60
1481 1841 6.997222 ACAATTCTTATACGCGGAGTAAAAC 58.003 36.000 12.47 0.00 39.04 2.43
1482 1842 7.009815 CAGACAATTCTTATACGCGGAGTAAAA 59.990 37.037 12.47 0.00 39.04 1.52
1483 1843 6.474427 CAGACAATTCTTATACGCGGAGTAAA 59.526 38.462 12.47 0.00 39.04 2.01
1484 1844 5.975344 CAGACAATTCTTATACGCGGAGTAA 59.025 40.000 12.47 5.50 39.04 2.24
1485 1845 5.297527 TCAGACAATTCTTATACGCGGAGTA 59.702 40.000 12.47 0.00 40.03 2.59
1486 1846 4.097437 TCAGACAATTCTTATACGCGGAGT 59.903 41.667 12.47 0.00 0.00 3.85
1487 1847 4.607955 TCAGACAATTCTTATACGCGGAG 58.392 43.478 12.47 2.64 0.00 4.63
1488 1848 4.642445 TCAGACAATTCTTATACGCGGA 57.358 40.909 12.47 0.00 0.00 5.54
1489 1849 4.804139 ACTTCAGACAATTCTTATACGCGG 59.196 41.667 12.47 0.00 0.00 6.46
1490 1850 5.515270 TGACTTCAGACAATTCTTATACGCG 59.485 40.000 3.53 3.53 0.00 6.01
1491 1851 6.887376 TGACTTCAGACAATTCTTATACGC 57.113 37.500 0.00 0.00 0.00 4.42
1492 1852 7.545965 ACCTTGACTTCAGACAATTCTTATACG 59.454 37.037 0.00 0.00 0.00 3.06
1493 1853 8.779354 ACCTTGACTTCAGACAATTCTTATAC 57.221 34.615 0.00 0.00 0.00 1.47
1494 1854 9.436957 GAACCTTGACTTCAGACAATTCTTATA 57.563 33.333 0.00 0.00 0.00 0.98
1495 1855 7.939039 TGAACCTTGACTTCAGACAATTCTTAT 59.061 33.333 6.80 0.00 0.00 1.73
1496 1856 7.279615 TGAACCTTGACTTCAGACAATTCTTA 58.720 34.615 6.80 0.00 0.00 2.10
1497 1857 6.122277 TGAACCTTGACTTCAGACAATTCTT 58.878 36.000 6.80 0.00 0.00 2.52
1498 1858 5.684704 TGAACCTTGACTTCAGACAATTCT 58.315 37.500 6.80 0.00 0.00 2.40
1499 1859 6.566197 ATGAACCTTGACTTCAGACAATTC 57.434 37.500 0.00 0.00 31.22 2.17
1500 1860 8.463930 TTTATGAACCTTGACTTCAGACAATT 57.536 30.769 0.00 0.00 31.22 2.32
1501 1861 7.721399 ACTTTATGAACCTTGACTTCAGACAAT 59.279 33.333 0.00 0.00 31.22 2.71
1502 1862 7.054124 ACTTTATGAACCTTGACTTCAGACAA 58.946 34.615 0.00 0.00 31.22 3.18
1503 1863 6.591935 ACTTTATGAACCTTGACTTCAGACA 58.408 36.000 0.00 0.00 31.22 3.41
1504 1864 7.497925 AACTTTATGAACCTTGACTTCAGAC 57.502 36.000 0.00 0.00 31.22 3.51
1505 1865 7.773224 TCAAACTTTATGAACCTTGACTTCAGA 59.227 33.333 0.00 0.00 31.22 3.27
1506 1866 7.857885 GTCAAACTTTATGAACCTTGACTTCAG 59.142 37.037 10.30 0.00 39.54 3.02
1507 1867 7.201785 GGTCAAACTTTATGAACCTTGACTTCA 60.202 37.037 14.42 0.00 41.40 3.02
1508 1868 7.139392 GGTCAAACTTTATGAACCTTGACTTC 58.861 38.462 14.42 2.42 41.40 3.01
1509 1869 6.605594 TGGTCAAACTTTATGAACCTTGACTT 59.394 34.615 14.42 0.00 41.40 3.01
1510 1870 6.126409 TGGTCAAACTTTATGAACCTTGACT 58.874 36.000 14.42 0.00 41.40 3.41
1511 1871 6.385649 TGGTCAAACTTTATGAACCTTGAC 57.614 37.500 9.54 9.54 41.09 3.18
1512 1872 8.877864 ATATGGTCAAACTTTATGAACCTTGA 57.122 30.769 0.00 0.00 33.47 3.02
1513 1873 9.927668 AAATATGGTCAAACTTTATGAACCTTG 57.072 29.630 0.00 0.00 33.47 3.61
1577 1937 9.265938 CGTCATGACTTTAGTTTTCATATTGTG 57.734 33.333 22.95 0.00 0.00 3.33
1578 1938 7.962918 GCGTCATGACTTTAGTTTTCATATTGT 59.037 33.333 22.95 0.00 0.00 2.71
1579 1939 7.962373 TGCGTCATGACTTTAGTTTTCATATTG 59.038 33.333 22.95 3.02 0.00 1.90
1580 1940 8.039603 TGCGTCATGACTTTAGTTTTCATATT 57.960 30.769 22.95 0.00 0.00 1.28
1581 1941 7.609760 TGCGTCATGACTTTAGTTTTCATAT 57.390 32.000 22.95 0.00 0.00 1.78
1582 1942 7.549134 AGATGCGTCATGACTTTAGTTTTCATA 59.451 33.333 22.95 0.00 0.00 2.15
1583 1943 5.940192 TGCGTCATGACTTTAGTTTTCAT 57.060 34.783 22.95 0.00 0.00 2.57
1584 1944 5.700832 AGATGCGTCATGACTTTAGTTTTCA 59.299 36.000 22.95 7.45 0.00 2.69
1585 1945 6.170675 AGATGCGTCATGACTTTAGTTTTC 57.829 37.500 22.95 8.71 0.00 2.29
1586 1946 7.667043 TTAGATGCGTCATGACTTTAGTTTT 57.333 32.000 22.95 4.61 0.00 2.43
1587 1947 7.334421 ACATTAGATGCGTCATGACTTTAGTTT 59.666 33.333 22.95 5.95 0.00 2.66
1588 1948 6.818644 ACATTAGATGCGTCATGACTTTAGTT 59.181 34.615 22.95 7.42 0.00 2.24
1589 1949 6.341316 ACATTAGATGCGTCATGACTTTAGT 58.659 36.000 22.95 8.00 0.00 2.24
1590 1950 6.834959 ACATTAGATGCGTCATGACTTTAG 57.165 37.500 22.95 9.02 0.00 1.85
1591 1951 6.593770 ACAACATTAGATGCGTCATGACTTTA 59.406 34.615 22.95 9.76 0.00 1.85
1592 1952 5.412594 ACAACATTAGATGCGTCATGACTTT 59.587 36.000 22.95 7.92 0.00 2.66
1593 1953 4.937620 ACAACATTAGATGCGTCATGACTT 59.062 37.500 22.95 8.27 0.00 3.01
1594 1954 4.507710 ACAACATTAGATGCGTCATGACT 58.492 39.130 22.95 4.97 0.00 3.41
1595 1955 4.864916 ACAACATTAGATGCGTCATGAC 57.135 40.909 16.21 16.21 0.00 3.06
1596 1956 4.934602 TCAACAACATTAGATGCGTCATGA 59.065 37.500 8.99 0.00 0.00 3.07
1597 1957 5.220557 TCAACAACATTAGATGCGTCATG 57.779 39.130 8.99 6.69 0.00 3.07
1598 1958 6.441093 AATCAACAACATTAGATGCGTCAT 57.559 33.333 8.99 0.00 0.00 3.06
1599 1959 5.878332 AATCAACAACATTAGATGCGTCA 57.122 34.783 8.99 0.00 0.00 4.35
1600 1960 6.801377 TGAAAATCAACAACATTAGATGCGTC 59.199 34.615 0.00 0.00 0.00 5.19
1601 1961 6.582295 GTGAAAATCAACAACATTAGATGCGT 59.418 34.615 0.00 0.00 0.00 5.24
1602 1962 6.581919 TGTGAAAATCAACAACATTAGATGCG 59.418 34.615 0.00 0.00 0.00 4.73
1603 1963 7.872163 TGTGAAAATCAACAACATTAGATGC 57.128 32.000 0.00 0.00 0.00 3.91
1606 1966 9.681692 CAGAATGTGAAAATCAACAACATTAGA 57.318 29.630 0.00 0.00 0.00 2.10
1607 1967 9.681692 TCAGAATGTGAAAATCAACAACATTAG 57.318 29.630 0.00 0.00 37.40 1.73
1609 1969 8.945481 TTCAGAATGTGAAAATCAACAACATT 57.055 26.923 0.00 0.00 42.49 2.71
1651 2011 9.651913 ACCTCGTAAACTTTAACCGAATTTATA 57.348 29.630 0.00 0.00 0.00 0.98
1652 2012 8.552083 ACCTCGTAAACTTTAACCGAATTTAT 57.448 30.769 0.00 0.00 0.00 1.40
1653 2013 7.961325 ACCTCGTAAACTTTAACCGAATTTA 57.039 32.000 0.00 0.00 0.00 1.40
1654 2014 6.866010 ACCTCGTAAACTTTAACCGAATTT 57.134 33.333 0.00 0.00 0.00 1.82
1655 2015 6.866010 AACCTCGTAAACTTTAACCGAATT 57.134 33.333 0.00 0.00 0.00 2.17
1656 2016 6.482973 TCAAACCTCGTAAACTTTAACCGAAT 59.517 34.615 0.00 0.00 0.00 3.34
1657 2017 5.814705 TCAAACCTCGTAAACTTTAACCGAA 59.185 36.000 0.00 0.00 0.00 4.30
1658 2018 5.234116 GTCAAACCTCGTAAACTTTAACCGA 59.766 40.000 0.00 0.00 0.00 4.69
1659 2019 5.234972 AGTCAAACCTCGTAAACTTTAACCG 59.765 40.000 0.00 0.00 0.00 4.44
1660 2020 6.609237 AGTCAAACCTCGTAAACTTTAACC 57.391 37.500 0.00 0.00 0.00 2.85
1661 2021 7.687445 TGAAGTCAAACCTCGTAAACTTTAAC 58.313 34.615 0.00 0.00 0.00 2.01
1662 2022 7.765360 TCTGAAGTCAAACCTCGTAAACTTTAA 59.235 33.333 0.00 0.00 0.00 1.52
1663 2023 7.223387 GTCTGAAGTCAAACCTCGTAAACTTTA 59.777 37.037 0.00 0.00 0.00 1.85
1664 2024 6.036844 GTCTGAAGTCAAACCTCGTAAACTTT 59.963 38.462 0.00 0.00 0.00 2.66
1665 2025 5.522824 GTCTGAAGTCAAACCTCGTAAACTT 59.477 40.000 0.00 0.00 0.00 2.66
1666 2026 5.048507 GTCTGAAGTCAAACCTCGTAAACT 58.951 41.667 0.00 0.00 0.00 2.66
1667 2027 4.807304 TGTCTGAAGTCAAACCTCGTAAAC 59.193 41.667 0.00 0.00 0.00 2.01
1668 2028 5.013568 TGTCTGAAGTCAAACCTCGTAAA 57.986 39.130 0.00 0.00 0.00 2.01
1669 2029 4.659111 TGTCTGAAGTCAAACCTCGTAA 57.341 40.909 0.00 0.00 0.00 3.18
1670 2030 4.659111 TTGTCTGAAGTCAAACCTCGTA 57.341 40.909 0.00 0.00 0.00 3.43
1671 2031 3.536956 TTGTCTGAAGTCAAACCTCGT 57.463 42.857 0.00 0.00 0.00 4.18
1672 2032 4.197107 GTTTGTCTGAAGTCAAACCTCG 57.803 45.455 17.13 0.00 43.31 4.63
1676 2036 7.750903 GCATATAAGGTTTGTCTGAAGTCAAAC 59.249 37.037 18.75 18.75 46.05 2.93
1677 2037 7.360861 CGCATATAAGGTTTGTCTGAAGTCAAA 60.361 37.037 0.00 0.00 32.37 2.69
1678 2038 6.092122 CGCATATAAGGTTTGTCTGAAGTCAA 59.908 38.462 0.00 0.00 0.00 3.18
1679 2039 5.580691 CGCATATAAGGTTTGTCTGAAGTCA 59.419 40.000 0.00 0.00 0.00 3.41
1680 2040 5.810587 TCGCATATAAGGTTTGTCTGAAGTC 59.189 40.000 0.00 0.00 0.00 3.01
1681 2041 5.730550 TCGCATATAAGGTTTGTCTGAAGT 58.269 37.500 0.00 0.00 0.00 3.01
1682 2042 6.313905 AGTTCGCATATAAGGTTTGTCTGAAG 59.686 38.462 0.00 0.00 0.00 3.02
1683 2043 6.170506 AGTTCGCATATAAGGTTTGTCTGAA 58.829 36.000 0.00 0.00 0.00 3.02
1684 2044 5.730550 AGTTCGCATATAAGGTTTGTCTGA 58.269 37.500 0.00 0.00 0.00 3.27
1685 2045 7.534085 TTAGTTCGCATATAAGGTTTGTCTG 57.466 36.000 0.00 0.00 0.00 3.51
1686 2046 8.556213 TTTTAGTTCGCATATAAGGTTTGTCT 57.444 30.769 0.00 0.00 0.00 3.41
1687 2047 9.274065 CTTTTTAGTTCGCATATAAGGTTTGTC 57.726 33.333 0.00 0.00 0.00 3.18
1688 2048 8.241367 CCTTTTTAGTTCGCATATAAGGTTTGT 58.759 33.333 0.00 0.00 0.00 2.83
1689 2049 8.455682 TCCTTTTTAGTTCGCATATAAGGTTTG 58.544 33.333 0.00 0.00 34.10 2.93
1690 2050 8.456471 GTCCTTTTTAGTTCGCATATAAGGTTT 58.544 33.333 0.00 0.00 34.10 3.27
1691 2051 7.066645 GGTCCTTTTTAGTTCGCATATAAGGTT 59.933 37.037 0.00 0.00 34.10 3.50
1692 2052 6.541278 GGTCCTTTTTAGTTCGCATATAAGGT 59.459 38.462 0.00 0.00 34.10 3.50
1693 2053 6.292703 CGGTCCTTTTTAGTTCGCATATAAGG 60.293 42.308 0.00 0.00 33.79 2.69
1694 2054 6.292703 CCGGTCCTTTTTAGTTCGCATATAAG 60.293 42.308 0.00 0.00 0.00 1.73
1695 2055 5.524646 CCGGTCCTTTTTAGTTCGCATATAA 59.475 40.000 0.00 0.00 0.00 0.98
1696 2056 5.051816 CCGGTCCTTTTTAGTTCGCATATA 58.948 41.667 0.00 0.00 0.00 0.86
1697 2057 3.875134 CCGGTCCTTTTTAGTTCGCATAT 59.125 43.478 0.00 0.00 0.00 1.78
1698 2058 3.055963 TCCGGTCCTTTTTAGTTCGCATA 60.056 43.478 0.00 0.00 0.00 3.14
1699 2059 2.081462 CCGGTCCTTTTTAGTTCGCAT 58.919 47.619 0.00 0.00 0.00 4.73
1700 2060 1.070445 TCCGGTCCTTTTTAGTTCGCA 59.930 47.619 0.00 0.00 0.00 5.10
1701 2061 1.730612 CTCCGGTCCTTTTTAGTTCGC 59.269 52.381 0.00 0.00 0.00 4.70
1702 2062 2.344025 CCTCCGGTCCTTTTTAGTTCG 58.656 52.381 0.00 0.00 0.00 3.95
1703 2063 2.303890 TCCCTCCGGTCCTTTTTAGTTC 59.696 50.000 0.00 0.00 0.00 3.01
1704 2064 2.305052 CTCCCTCCGGTCCTTTTTAGTT 59.695 50.000 0.00 0.00 0.00 2.24
1705 2065 1.907255 CTCCCTCCGGTCCTTTTTAGT 59.093 52.381 0.00 0.00 0.00 2.24
1706 2066 1.907255 ACTCCCTCCGGTCCTTTTTAG 59.093 52.381 0.00 0.00 0.00 1.85
1707 2067 2.034436 ACTCCCTCCGGTCCTTTTTA 57.966 50.000 0.00 0.00 0.00 1.52
1708 2068 1.627329 GTACTCCCTCCGGTCCTTTTT 59.373 52.381 0.00 0.00 0.00 1.94
1709 2069 1.273759 GTACTCCCTCCGGTCCTTTT 58.726 55.000 0.00 0.00 0.00 2.27
1710 2070 0.115745 TGTACTCCCTCCGGTCCTTT 59.884 55.000 0.00 0.00 0.00 3.11
1711 2071 0.115745 TTGTACTCCCTCCGGTCCTT 59.884 55.000 0.00 0.00 0.00 3.36
1712 2072 0.115745 TTTGTACTCCCTCCGGTCCT 59.884 55.000 0.00 0.00 0.00 3.85
1713 2073 0.248565 GTTTGTACTCCCTCCGGTCC 59.751 60.000 0.00 0.00 0.00 4.46
1714 2074 0.248565 GGTTTGTACTCCCTCCGGTC 59.751 60.000 0.00 0.00 0.00 4.79
1715 2075 0.472352 TGGTTTGTACTCCCTCCGGT 60.472 55.000 0.00 0.00 0.00 5.28
1716 2076 0.036671 GTGGTTTGTACTCCCTCCGG 60.037 60.000 0.00 0.00 0.00 5.14
1717 2077 0.036671 GGTGGTTTGTACTCCCTCCG 60.037 60.000 0.00 0.00 0.00 4.63
1718 2078 0.036671 CGGTGGTTTGTACTCCCTCC 60.037 60.000 0.00 1.20 0.00 4.30
1719 2079 0.971386 TCGGTGGTTTGTACTCCCTC 59.029 55.000 0.00 0.00 0.00 4.30
1720 2080 1.553704 GATCGGTGGTTTGTACTCCCT 59.446 52.381 0.00 0.00 0.00 4.20
1721 2081 1.738030 CGATCGGTGGTTTGTACTCCC 60.738 57.143 7.38 0.00 0.00 4.30
1722 2082 1.067354 ACGATCGGTGGTTTGTACTCC 60.067 52.381 20.98 0.00 0.00 3.85
1723 2083 2.358939 ACGATCGGTGGTTTGTACTC 57.641 50.000 20.98 0.00 0.00 2.59
1724 2084 3.084039 TCTACGATCGGTGGTTTGTACT 58.916 45.455 20.98 0.00 0.00 2.73
1725 2085 3.174375 GTCTACGATCGGTGGTTTGTAC 58.826 50.000 20.98 1.18 0.00 2.90
1726 2086 2.164219 GGTCTACGATCGGTGGTTTGTA 59.836 50.000 20.98 0.00 0.00 2.41
1727 2087 1.067354 GGTCTACGATCGGTGGTTTGT 60.067 52.381 20.98 0.00 0.00 2.83
1728 2088 1.636988 GGTCTACGATCGGTGGTTTG 58.363 55.000 20.98 0.00 0.00 2.93
1746 2106 0.596082 AAAACAATCCAACCGCTCGG 59.404 50.000 6.79 6.79 42.03 4.63
1747 2107 3.680789 GATAAAACAATCCAACCGCTCG 58.319 45.455 0.00 0.00 0.00 5.03
1748 2108 3.486875 CCGATAAAACAATCCAACCGCTC 60.487 47.826 0.00 0.00 0.00 5.03
1749 2109 2.422127 CCGATAAAACAATCCAACCGCT 59.578 45.455 0.00 0.00 0.00 5.52
1750 2110 2.478879 CCCGATAAAACAATCCAACCGC 60.479 50.000 0.00 0.00 0.00 5.68
1751 2111 3.011119 TCCCGATAAAACAATCCAACCG 58.989 45.455 0.00 0.00 0.00 4.44
1752 2112 5.348164 CATTCCCGATAAAACAATCCAACC 58.652 41.667 0.00 0.00 0.00 3.77
1753 2113 5.105513 ACCATTCCCGATAAAACAATCCAAC 60.106 40.000 0.00 0.00 0.00 3.77
1754 2114 5.020132 ACCATTCCCGATAAAACAATCCAA 58.980 37.500 0.00 0.00 0.00 3.53
1755 2115 4.605183 ACCATTCCCGATAAAACAATCCA 58.395 39.130 0.00 0.00 0.00 3.41
1756 2116 5.592104 AACCATTCCCGATAAAACAATCC 57.408 39.130 0.00 0.00 0.00 3.01
1757 2117 7.219344 CGTAAAACCATTCCCGATAAAACAATC 59.781 37.037 0.00 0.00 0.00 2.67
1758 2118 7.030768 CGTAAAACCATTCCCGATAAAACAAT 58.969 34.615 0.00 0.00 0.00 2.71
1759 2119 6.016443 ACGTAAAACCATTCCCGATAAAACAA 60.016 34.615 0.00 0.00 0.00 2.83
1760 2120 5.472820 ACGTAAAACCATTCCCGATAAAACA 59.527 36.000 0.00 0.00 0.00 2.83
1761 2121 5.941733 ACGTAAAACCATTCCCGATAAAAC 58.058 37.500 0.00 0.00 0.00 2.43
1762 2122 5.163874 CGACGTAAAACCATTCCCGATAAAA 60.164 40.000 0.00 0.00 0.00 1.52
1763 2123 4.329528 CGACGTAAAACCATTCCCGATAAA 59.670 41.667 0.00 0.00 0.00 1.40
1764 2124 3.864583 CGACGTAAAACCATTCCCGATAA 59.135 43.478 0.00 0.00 0.00 1.75
1765 2125 3.119173 ACGACGTAAAACCATTCCCGATA 60.119 43.478 0.00 0.00 0.00 2.92
1766 2126 2.273557 CGACGTAAAACCATTCCCGAT 58.726 47.619 0.00 0.00 0.00 4.18
1767 2127 1.000731 ACGACGTAAAACCATTCCCGA 59.999 47.619 0.00 0.00 0.00 5.14
1768 2128 1.391144 GACGACGTAAAACCATTCCCG 59.609 52.381 0.00 0.00 0.00 5.14
1769 2129 2.691927 AGACGACGTAAAACCATTCCC 58.308 47.619 0.00 0.00 0.00 3.97
1770 2130 4.925646 AGTTAGACGACGTAAAACCATTCC 59.074 41.667 16.90 0.00 0.00 3.01
1771 2131 6.457851 AAGTTAGACGACGTAAAACCATTC 57.542 37.500 16.90 0.00 0.00 2.67
1772 2132 6.849588 AAAGTTAGACGACGTAAAACCATT 57.150 33.333 16.90 11.78 0.00 3.16
1773 2133 7.412237 GCATAAAGTTAGACGACGTAAAACCAT 60.412 37.037 16.90 11.01 0.00 3.55
1774 2134 6.128849 GCATAAAGTTAGACGACGTAAAACCA 60.129 38.462 16.90 7.30 0.00 3.67
1775 2135 6.128849 TGCATAAAGTTAGACGACGTAAAACC 60.129 38.462 16.90 0.00 0.00 3.27
1776 2136 6.810286 TGCATAAAGTTAGACGACGTAAAAC 58.190 36.000 14.08 14.08 0.00 2.43
1777 2137 7.116662 ACATGCATAAAGTTAGACGACGTAAAA 59.883 33.333 0.00 0.00 0.00 1.52
1778 2138 6.587226 ACATGCATAAAGTTAGACGACGTAAA 59.413 34.615 0.00 0.00 0.00 2.01
1779 2139 6.034150 CACATGCATAAAGTTAGACGACGTAA 59.966 38.462 0.00 0.00 0.00 3.18
1780 2140 5.513849 CACATGCATAAAGTTAGACGACGTA 59.486 40.000 0.00 0.00 0.00 3.57
1781 2141 4.326278 CACATGCATAAAGTTAGACGACGT 59.674 41.667 0.00 0.00 0.00 4.34
1782 2142 4.326278 ACACATGCATAAAGTTAGACGACG 59.674 41.667 0.00 0.00 0.00 5.12
1783 2143 5.347635 TGACACATGCATAAAGTTAGACGAC 59.652 40.000 0.00 0.00 0.00 4.34
1784 2144 5.474825 TGACACATGCATAAAGTTAGACGA 58.525 37.500 0.00 0.00 0.00 4.20
1785 2145 5.778161 TGACACATGCATAAAGTTAGACG 57.222 39.130 0.00 0.00 0.00 4.18
1796 2156 9.964354 ACCACTATATTATATTGACACATGCAT 57.036 29.630 0.00 0.00 0.00 3.96
1817 2177 9.197306 TCAGACATATGTAGTGTAATTACCACT 57.803 33.333 8.71 16.33 0.00 4.00
1818 2178 9.811995 TTCAGACATATGTAGTGTAATTACCAC 57.188 33.333 8.71 10.69 0.00 4.16
1819 2179 9.811995 GTTCAGACATATGTAGTGTAATTACCA 57.188 33.333 8.71 4.15 0.00 3.25
1825 2185 8.581578 TGACAAGTTCAGACATATGTAGTGTAA 58.418 33.333 8.71 4.00 0.00 2.41
1836 2196 4.914983 ACATCCATGACAAGTTCAGACAT 58.085 39.130 0.00 0.00 37.77 3.06
1870 2230 6.480981 AGTTCAATGCATTTTTCAAGTTCAGG 59.519 34.615 9.83 0.00 0.00 3.86
1918 2278 7.355017 GTGTATGATTTGAATCGTATGTGCAT 58.645 34.615 8.45 0.00 38.68 3.96
1929 2289 5.407387 GGGCGTATACGTGTATGATTTGAAT 59.593 40.000 25.04 0.00 42.22 2.57
1936 2296 1.337703 GGTGGGCGTATACGTGTATGA 59.662 52.381 25.04 2.80 42.22 2.15
1943 2303 1.069090 AGCATGGTGGGCGTATACG 59.931 57.895 20.87 20.87 43.27 3.06
1961 2321 1.304630 ATGCTGGCATGCCTTGTCA 60.305 52.632 35.53 25.55 37.70 3.58
1978 2338 4.119363 ACAGCGGGCTCCATGCAT 62.119 61.111 0.00 0.00 45.15 3.96
2002 2362 1.414061 CCCTCCTCCCTGCCATACTG 61.414 65.000 0.00 0.00 0.00 2.74
2015 2375 1.210204 ACCATGTCACATGCCCTCCT 61.210 55.000 12.76 0.00 0.00 3.69
2023 2383 3.317711 TCGCAAAAAGAACCATGTCACAT 59.682 39.130 0.00 0.00 0.00 3.21
2030 2390 3.462982 GGGTTTTCGCAAAAAGAACCAT 58.537 40.909 5.99 0.00 41.12 3.55
2031 2391 2.418884 GGGGTTTTCGCAAAAAGAACCA 60.419 45.455 5.99 0.00 41.12 3.67
2032 2392 2.159014 AGGGGTTTTCGCAAAAAGAACC 60.159 45.455 0.00 0.00 39.16 3.62
2033 2393 3.173668 AGGGGTTTTCGCAAAAAGAAC 57.826 42.857 0.00 0.00 35.10 3.01
2035 2395 2.761208 TCAAGGGGTTTTCGCAAAAAGA 59.239 40.909 0.00 0.00 35.10 2.52
2036 2396 3.172229 TCAAGGGGTTTTCGCAAAAAG 57.828 42.857 0.00 0.00 35.10 2.27
2037 2397 3.611766 TTCAAGGGGTTTTCGCAAAAA 57.388 38.095 0.00 0.00 31.13 1.94
2038 2398 3.828875 ATTCAAGGGGTTTTCGCAAAA 57.171 38.095 0.00 0.00 34.25 2.44
2039 2399 3.828875 AATTCAAGGGGTTTTCGCAAA 57.171 38.095 0.00 0.00 34.25 3.68
2118 2478 9.719355 ACATGAACACTTTTATGTACTACATGA 57.281 29.630 11.39 1.03 39.50 3.07
2206 2569 1.048724 AGGGCGCACTAGGCTCATTA 61.049 55.000 12.52 0.00 41.67 1.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.