Multiple sequence alignment - TraesCS2D01G549600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G549600 chr2D 100.000 4397 0 0 1 4397 625145433 625149829 0.000000e+00 8120.0
1 TraesCS2D01G549600 chr2D 86.265 2257 258 32 1928 4150 635808720 635806482 0.000000e+00 2403.0
2 TraesCS2D01G549600 chr2D 82.946 1249 162 20 2553 3771 636048165 636049392 0.000000e+00 1079.0
3 TraesCS2D01G549600 chr2D 82.558 602 76 14 1932 2531 636047359 636047933 1.830000e-138 503.0
4 TraesCS2D01G549600 chr2D 89.086 394 27 11 975 1363 636043620 636044002 3.980000e-130 475.0
5 TraesCS2D01G549600 chr2D 86.581 313 19 11 1 309 523167082 523166789 1.530000e-84 324.0
6 TraesCS2D01G549600 chr2D 88.060 268 30 2 3839 4105 635840941 635840675 2.550000e-82 316.0
7 TraesCS2D01G549600 chr2D 88.679 212 24 0 1089 1300 635853695 635853484 4.360000e-65 259.0
8 TraesCS2D01G549600 chr2D 81.098 328 34 6 994 1315 635819889 635819584 2.040000e-58 237.0
9 TraesCS2D01G549600 chr2D 83.740 246 27 8 4160 4397 635901575 635901335 2.060000e-53 220.0
10 TraesCS2D01G549600 chr2D 88.356 146 16 1 1139 1284 635880872 635880728 1.630000e-39 174.0
11 TraesCS2D01G549600 chr2D 81.863 204 37 0 4193 4396 635806481 635806278 5.850000e-39 172.0
12 TraesCS2D01G549600 chr2D 82.353 187 31 2 3784 3969 636049450 636049635 1.270000e-35 161.0
13 TraesCS2D01G549600 chr2D 83.721 86 10 3 1700 1783 635808969 635808886 1.310000e-10 78.7
14 TraesCS2D01G549600 chr2B 96.102 4438 93 23 1 4397 767370603 767375001 0.000000e+00 7164.0
15 TraesCS2D01G549600 chr2B 84.070 1607 201 31 1910 3497 793980412 793981982 0.000000e+00 1498.0
16 TraesCS2D01G549600 chr2B 84.628 1236 160 12 1913 3126 793921773 793920546 0.000000e+00 1203.0
17 TraesCS2D01G549600 chr2B 86.002 893 97 13 3162 4031 793920173 793919286 0.000000e+00 931.0
18 TraesCS2D01G549600 chr2B 78.788 264 42 7 3550 3806 793981999 793982255 9.780000e-37 165.0
19 TraesCS2D01G549600 chrUn 84.150 2429 319 33 2018 4397 124673506 124675917 0.000000e+00 2292.0
20 TraesCS2D01G549600 chrUn 81.678 453 74 7 3950 4396 124806281 124806730 6.950000e-98 368.0
21 TraesCS2D01G549600 chrUn 84.543 317 45 4 1001 1315 124667106 124667420 1.190000e-80 311.0
22 TraesCS2D01G549600 chrUn 82.427 239 24 7 4164 4397 124712976 124713201 4.490000e-45 193.0
23 TraesCS2D01G549600 chrUn 80.233 86 17 0 1707 1792 124671687 124671772 1.020000e-06 65.8
24 TraesCS2D01G549600 chr7B 89.062 320 21 6 1 309 673656598 673656282 6.900000e-103 385.0
25 TraesCS2D01G549600 chr7B 84.098 327 31 7 3 309 740942980 740943305 3.330000e-76 296.0
26 TraesCS2D01G549600 chr7B 96.610 59 2 0 708 766 347997593 347997651 1.010000e-16 99.0
27 TraesCS2D01G549600 chr5B 86.769 325 26 6 1 309 334049675 334049998 3.260000e-91 346.0
28 TraesCS2D01G549600 chr5B 85.427 199 26 2 1 197 271042246 271042049 2.070000e-48 204.0
29 TraesCS2D01G549600 chr5B 95.327 107 5 0 206 312 415792363 415792257 2.100000e-38 171.0
30 TraesCS2D01G549600 chr3B 86.154 325 27 7 1 309 77162501 77162179 7.050000e-88 335.0
31 TraesCS2D01G549600 chr3B 92.373 118 8 1 206 323 119961605 119961489 2.720000e-37 167.0
32 TraesCS2D01G549600 chr4A 94.000 200 9 3 1 199 651823806 651824003 2.570000e-77 300.0
33 TraesCS2D01G549600 chr4A 81.620 321 33 8 1 310 660200759 660201064 4.390000e-60 243.0
34 TraesCS2D01G549600 chr4A 88.500 200 16 3 2 200 714908546 714908739 7.350000e-58 235.0
35 TraesCS2D01G549600 chr4A 93.056 72 5 0 709 780 180448368 180448297 6.010000e-19 106.0
36 TraesCS2D01G549600 chr4B 93.846 195 10 2 1 194 560238960 560238767 4.300000e-75 292.0
37 TraesCS2D01G549600 chr4B 92.462 199 14 1 1 199 115374121 115373924 2.590000e-72 283.0
38 TraesCS2D01G549600 chr4B 96.190 105 4 0 206 310 91736539 91736643 5.850000e-39 172.0
39 TraesCS2D01G549600 chr4B 95.238 105 5 0 206 310 91736280 91736384 2.720000e-37 167.0
40 TraesCS2D01G549600 chr5D 75.871 402 88 4 2231 2632 552734959 552735351 3.470000e-46 196.0
41 TraesCS2D01G549600 chr5D 72.540 437 90 23 3857 4270 552736478 552736907 9.990000e-22 115.0
42 TraesCS2D01G549600 chr7A 91.781 73 6 0 705 777 36013146 36013218 7.780000e-18 102.0
43 TraesCS2D01G549600 chr6B 95.082 61 2 1 708 767 20719708 20719768 1.300000e-15 95.3
44 TraesCS2D01G549600 chr1B 90.141 71 7 0 707 777 573330545 573330475 4.680000e-15 93.5
45 TraesCS2D01G549600 chr1B 81.651 109 20 0 3354 3462 169940 169832 1.680000e-14 91.6
46 TraesCS2D01G549600 chr5A 95.745 47 2 0 707 753 306881239 306881285 4.720000e-10 76.8
47 TraesCS2D01G549600 chr2A 92.593 54 3 1 706 758 101771863 101771916 4.720000e-10 76.8
48 TraesCS2D01G549600 chr7D 95.652 46 2 0 708 753 169472599 169472644 1.700000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G549600 chr2D 625145433 625149829 4396 False 8120.000000 8120 100.000000 1 4397 1 chr2D.!!$F1 4396
1 TraesCS2D01G549600 chr2D 635806278 635808969 2691 True 884.566667 2403 83.949667 1700 4396 3 chr2D.!!$R7 2696
2 TraesCS2D01G549600 chr2D 636043620 636049635 6015 False 554.500000 1079 84.235750 975 3969 4 chr2D.!!$F2 2994
3 TraesCS2D01G549600 chr2B 767370603 767375001 4398 False 7164.000000 7164 96.102000 1 4397 1 chr2B.!!$F1 4396
4 TraesCS2D01G549600 chr2B 793919286 793921773 2487 True 1067.000000 1203 85.315000 1913 4031 2 chr2B.!!$R1 2118
5 TraesCS2D01G549600 chr2B 793980412 793982255 1843 False 831.500000 1498 81.429000 1910 3806 2 chr2B.!!$F2 1896
6 TraesCS2D01G549600 chrUn 124671687 124675917 4230 False 1178.900000 2292 82.191500 1707 4397 2 chrUn.!!$F4 2690

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
226 227 0.108329 TCGCGAGAAGGGAAATGACC 60.108 55.000 3.71 0.0 38.97 4.02 F
1692 4538 1.115467 CTGTAGGCCTCGATTCTGGT 58.885 55.000 9.68 0.0 0.00 4.00 F
1989 6363 3.554337 GCGTGGGGATAGTTCGATGTAAT 60.554 47.826 0.00 0.0 0.00 1.89 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1720 4569 0.798776 AGAGAGAATTTTGTGCCGCG 59.201 50.000 0.00 0.00 0.0 6.46 R
2902 7523 2.028112 CACCCACTGTTCTAGCTGCTAA 60.028 50.000 11.02 0.00 0.0 3.09 R
3763 8778 3.512516 GCAATCCAGGACCGCTGC 61.513 66.667 4.87 2.44 0.0 5.25 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
91 92 3.485743 GGTTTTAAGTTTTGTCGCTGCTG 59.514 43.478 0.00 0.00 0.00 4.41
109 110 5.173854 GCTGCTGTGTGTTTTTCTATGTTTC 59.826 40.000 0.00 0.00 0.00 2.78
151 152 2.358737 CCAGTCAGTCGGGTTGGC 60.359 66.667 0.00 0.00 0.00 4.52
156 157 2.509336 CAGTCGGGTTGGCTAGCG 60.509 66.667 9.00 0.00 0.00 4.26
226 227 0.108329 TCGCGAGAAGGGAAATGACC 60.108 55.000 3.71 0.00 38.97 4.02
290 291 1.882198 CGACAACTTGCCGCAATAAG 58.118 50.000 6.19 0.00 0.00 1.73
404 405 1.234821 GTTGCAGATTTCACGGGTCA 58.765 50.000 0.00 0.00 0.00 4.02
444 445 1.200020 GTTTCCCTTGCCGTCAATGAG 59.800 52.381 0.00 0.00 0.00 2.90
483 484 4.175516 CCGCGTTATACCAACTAACAAGA 58.824 43.478 4.92 0.00 0.00 3.02
484 485 4.807304 CCGCGTTATACCAACTAACAAGAT 59.193 41.667 4.92 0.00 0.00 2.40
676 682 4.275810 CACTGGGAGATGATTGGACAATT 58.724 43.478 0.00 0.00 0.00 2.32
726 732 3.145806 TTTTTGACGCGTTAACGGC 57.854 47.368 27.82 18.67 43.05 5.68
734 740 3.083716 CGTTAACGGCGGGCTTAC 58.916 61.111 20.24 0.72 35.37 2.34
772 778 3.502191 TGTCAAAACCAACAGAGTTGC 57.498 42.857 4.42 0.00 0.00 4.17
815 821 1.478510 ACAGTCCTATCCTTGCGTCAG 59.521 52.381 0.00 0.00 0.00 3.51
895 905 7.391554 TGCCATATATTTTAGCTGCTTTCTAGG 59.608 37.037 7.79 0.39 0.00 3.02
896 906 7.391833 GCCATATATTTTAGCTGCTTTCTAGGT 59.608 37.037 7.79 0.00 0.00 3.08
897 907 8.725148 CCATATATTTTAGCTGCTTTCTAGGTG 58.275 37.037 7.79 0.00 0.00 4.00
898 908 4.972514 ATTTTAGCTGCTTTCTAGGTGC 57.027 40.909 7.79 0.00 0.00 5.01
899 909 3.703001 TTTAGCTGCTTTCTAGGTGCT 57.297 42.857 7.79 0.00 34.92 4.40
900 910 4.819105 TTTAGCTGCTTTCTAGGTGCTA 57.181 40.909 7.79 0.00 32.72 3.49
901 911 5.359194 TTTAGCTGCTTTCTAGGTGCTAT 57.641 39.130 7.79 0.00 33.81 2.97
984 994 5.805728 TCCCCACTCTCTCAAAACTAATTC 58.194 41.667 0.00 0.00 0.00 2.17
1302 1312 6.101650 TGTCTAGAGAAGCAGATCAAAACA 57.898 37.500 0.00 0.00 0.00 2.83
1356 1405 7.177921 TCTCTACCTAAAAAGGATCGTCTGAAA 59.822 37.037 0.00 0.00 0.00 2.69
1431 3526 9.185192 GCTTTTGTTGTTCCATATATATGAAGC 57.815 33.333 21.97 19.17 35.75 3.86
1461 3556 6.600822 AGAAAGTAGAAACACATCATCCATGG 59.399 38.462 4.97 4.97 36.72 3.66
1462 3557 5.441718 AGTAGAAACACATCATCCATGGT 57.558 39.130 12.58 0.00 36.72 3.55
1572 3667 6.002082 AGCCTAAACCTACATCGAAACTTTT 58.998 36.000 0.00 0.00 0.00 2.27
1588 3683 5.833406 AACTTTTGCAAGGGAAAATTTGG 57.167 34.783 0.00 0.00 33.82 3.28
1603 3698 2.697431 TTTGGGAAATTCGAACGCTG 57.303 45.000 0.00 0.00 0.00 5.18
1692 4538 1.115467 CTGTAGGCCTCGATTCTGGT 58.885 55.000 9.68 0.00 0.00 4.00
1714 4563 8.096621 TGGTTCACATGTATTCCCTTAGATTA 57.903 34.615 0.00 0.00 0.00 1.75
1720 4569 7.661847 CACATGTATTCCCTTAGATTACCCTTC 59.338 40.741 0.00 0.00 32.59 3.46
1891 4765 5.339477 AGAGAACTAGGTTTAGGGCAAGTA 58.661 41.667 0.00 0.00 0.00 2.24
1898 4772 7.110810 ACTAGGTTTAGGGCAAGTAATTTCTC 58.889 38.462 0.00 0.00 0.00 2.87
1989 6363 3.554337 GCGTGGGGATAGTTCGATGTAAT 60.554 47.826 0.00 0.00 0.00 1.89
2015 6399 5.488262 TTCTCTCATCTGAATGGTCACAA 57.512 39.130 0.00 0.00 33.42 3.33
2016 6400 5.082251 TCTCTCATCTGAATGGTCACAAG 57.918 43.478 0.00 0.00 33.42 3.16
2018 6402 4.825422 TCTCATCTGAATGGTCACAAGTC 58.175 43.478 0.00 0.00 33.42 3.01
2020 6404 4.318332 TCATCTGAATGGTCACAAGTCAC 58.682 43.478 0.00 0.00 33.42 3.67
2021 6405 3.836365 TCTGAATGGTCACAAGTCACA 57.164 42.857 0.00 0.00 0.00 3.58
2022 6406 4.356405 TCTGAATGGTCACAAGTCACAT 57.644 40.909 0.00 0.00 0.00 3.21
2023 6407 5.482163 TCTGAATGGTCACAAGTCACATA 57.518 39.130 0.00 0.00 0.00 2.29
2024 6408 5.237815 TCTGAATGGTCACAAGTCACATAC 58.762 41.667 0.00 0.00 0.00 2.39
2025 6409 4.967036 TGAATGGTCACAAGTCACATACA 58.033 39.130 0.00 0.00 0.00 2.29
2026 6410 5.372373 TGAATGGTCACAAGTCACATACAA 58.628 37.500 0.00 0.00 0.00 2.41
2027 6411 6.003326 TGAATGGTCACAAGTCACATACAAT 58.997 36.000 0.00 0.00 0.00 2.71
2030 6416 7.994425 ATGGTCACAAGTCACATACAATTTA 57.006 32.000 0.00 0.00 0.00 1.40
2188 6579 7.041167 TGTCAAGCATAAGTGATGGCAATATAC 60.041 37.037 0.00 0.00 35.91 1.47
3165 8123 2.514824 GGGGCGGATGCTGAAGAC 60.515 66.667 0.00 0.00 42.25 3.01
3302 8275 1.078143 CAGGGGCAGTAGCTGGAAC 60.078 63.158 0.00 0.00 41.70 3.62
3465 8459 6.894735 TTTATAGTGTTGGAGGGGATACAA 57.105 37.500 0.00 0.00 39.74 2.41
3509 8503 4.093011 AGAACATACTCAAGAGTCTGCCT 58.907 43.478 13.52 9.28 42.54 4.75
3684 8693 4.625607 AGCAGTCTAAACCAGCTTTACT 57.374 40.909 0.00 0.00 34.64 2.24
3763 8778 4.273235 TCTTATCAACTTGCGGCATGTATG 59.727 41.667 20.04 18.26 0.00 2.39
4157 9224 2.564771 CTGCAACAACTTGGTCTCTCA 58.435 47.619 0.00 0.00 0.00 3.27
4376 9443 0.669318 TGAAGTGCGACGATGGGTTC 60.669 55.000 0.00 0.00 0.00 3.62
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
54 55 6.869695 ACTTAAAACCAGTTCACGGAATTTT 58.130 32.000 0.00 0.00 0.00 1.82
91 92 4.276460 ACGCGAAACATAGAAAAACACAC 58.724 39.130 15.93 0.00 0.00 3.82
109 110 1.305482 GATGACGAACAAACAACGCG 58.695 50.000 3.53 3.53 0.00 6.01
151 152 2.417339 ACATGTATACGCCACGCTAG 57.583 50.000 0.00 0.00 0.00 3.42
156 157 4.049186 CCTTCTGTACATGTATACGCCAC 58.951 47.826 9.18 0.00 0.00 5.01
289 290 1.594331 GGAATTTCCTATTCGCCGCT 58.406 50.000 8.25 0.00 32.53 5.52
290 291 0.591659 GGGAATTTCCTATTCGCCGC 59.408 55.000 14.95 0.00 36.57 6.53
322 323 7.415095 CGAAAACAATGCTGAATTACTATCCCA 60.415 37.037 0.00 0.00 0.00 4.37
404 405 4.634703 TTGACCACACGGCCGCAT 62.635 61.111 28.58 11.25 34.57 4.73
413 414 2.374184 CAAGGGAAACTGTTGACCACA 58.626 47.619 13.95 0.00 0.00 4.17
483 484 2.099921 CTGACTCTGGGAAATCGACGAT 59.900 50.000 4.05 4.05 0.00 3.73
484 485 1.472878 CTGACTCTGGGAAATCGACGA 59.527 52.381 0.00 0.00 0.00 4.20
553 559 7.653647 TGTGGTTTAACAAGCTTAATAACCTG 58.346 34.615 22.12 5.23 0.00 4.00
676 682 4.746729 TGCCGTCTAGCTCGTAATTTAAA 58.253 39.130 0.00 0.00 0.00 1.52
734 740 1.812571 ACAATAAAGTTCAGGCAGGCG 59.187 47.619 0.00 0.00 0.00 5.52
815 821 4.849518 AGAAAGGGAAGGAGCTCAATTAC 58.150 43.478 17.19 10.24 0.00 1.89
895 905 5.633182 GCAATGAGCTAGTAAGAGATAGCAC 59.367 44.000 6.94 1.46 45.54 4.40
896 906 5.302823 TGCAATGAGCTAGTAAGAGATAGCA 59.697 40.000 6.94 0.00 45.54 3.49
897 907 5.777802 TGCAATGAGCTAGTAAGAGATAGC 58.222 41.667 0.00 0.00 45.94 2.97
898 908 7.432869 AGTTGCAATGAGCTAGTAAGAGATAG 58.567 38.462 0.59 0.00 45.94 2.08
899 909 7.353414 AGTTGCAATGAGCTAGTAAGAGATA 57.647 36.000 0.59 0.00 45.94 1.98
900 910 6.232581 AGTTGCAATGAGCTAGTAAGAGAT 57.767 37.500 0.59 0.00 45.94 2.75
901 911 5.667539 AGTTGCAATGAGCTAGTAAGAGA 57.332 39.130 0.59 0.00 45.94 3.10
947 957 2.508436 GGGAGAAGGCTAGGCTGC 59.492 66.667 20.99 18.80 0.00 5.25
984 994 5.772169 TGGATCCATCACTACAGACAGATAG 59.228 44.000 11.44 0.00 0.00 2.08
993 1003 5.966853 TGGTAATTGGATCCATCACTACA 57.033 39.130 17.06 8.27 0.00 2.74
1131 1141 3.495753 CCAAGATTTTTGGCTCAAGTTGC 59.504 43.478 0.00 0.00 32.18 4.17
1302 1312 1.002502 GCCCGGCTGTAGTTTTCCT 60.003 57.895 0.71 0.00 0.00 3.36
1371 1420 7.659390 ACAGAACACAAAACAAATGGAAGAAAA 59.341 29.630 0.00 0.00 0.00 2.29
1432 3527 9.031537 TGGATGATGTGTTTCTACTTTCTAGTA 57.968 33.333 0.00 0.00 35.78 1.82
1442 3537 6.957631 ACTTACCATGGATGATGTGTTTCTA 58.042 36.000 21.47 0.00 0.00 2.10
1444 3539 5.647658 TGACTTACCATGGATGATGTGTTTC 59.352 40.000 21.47 1.28 0.00 2.78
1445 3540 5.569355 TGACTTACCATGGATGATGTGTTT 58.431 37.500 21.47 0.00 0.00 2.83
1446 3541 5.178096 TGACTTACCATGGATGATGTGTT 57.822 39.130 21.47 0.00 0.00 3.32
1447 3542 4.842531 TGACTTACCATGGATGATGTGT 57.157 40.909 21.47 6.86 0.00 3.72
1448 3543 6.704289 ATTTGACTTACCATGGATGATGTG 57.296 37.500 21.47 3.58 0.00 3.21
1449 3544 7.722949 AAATTTGACTTACCATGGATGATGT 57.277 32.000 21.47 11.10 0.00 3.06
1450 3545 7.493320 CCAAAATTTGACTTACCATGGATGATG 59.507 37.037 21.47 7.95 0.00 3.07
1451 3546 7.558604 CCAAAATTTGACTTACCATGGATGAT 58.441 34.615 21.47 0.15 0.00 2.45
1452 3547 6.574073 GCCAAAATTTGACTTACCATGGATGA 60.574 38.462 21.47 0.00 0.00 2.92
1453 3548 5.581874 GCCAAAATTTGACTTACCATGGATG 59.418 40.000 21.47 10.20 0.00 3.51
1461 3556 9.369904 ACATTGATATGCCAAAATTTGACTTAC 57.630 29.630 7.37 0.00 35.03 2.34
1462 3557 9.941325 AACATTGATATGCCAAAATTTGACTTA 57.059 25.926 7.37 0.00 35.03 2.24
1572 3667 4.720775 ATTTCCCAAATTTTCCCTTGCA 57.279 36.364 0.00 0.00 0.00 4.08
1588 3683 3.125316 ACAAGATCAGCGTTCGAATTTCC 59.875 43.478 0.00 0.00 0.00 3.13
1603 3698 6.956299 ATTGCAATTTTGTGCTACAAGATC 57.044 33.333 5.99 0.00 45.17 2.75
1692 4538 7.349859 AGGGTAATCTAAGGGAATACATGTGAA 59.650 37.037 9.11 0.00 33.28 3.18
1714 4563 1.460273 AATTTTGTGCCGCGAAGGGT 61.460 50.000 8.23 0.00 41.48 4.34
1720 4569 0.798776 AGAGAGAATTTTGTGCCGCG 59.201 50.000 0.00 0.00 0.00 6.46
1989 6363 7.623630 TGTGACCATTCAGATGAGAGAAATTA 58.376 34.615 0.00 0.00 35.16 1.40
2188 6579 3.554524 GATTGACAACCATTGTGTGTCG 58.445 45.455 0.00 0.00 45.52 4.35
2902 7523 2.028112 CACCCACTGTTCTAGCTGCTAA 60.028 50.000 11.02 0.00 0.00 3.09
3165 8123 6.935741 TCATTAAATATTCCCAGACCAACG 57.064 37.500 0.00 0.00 0.00 4.10
3465 8459 7.009179 TCTTGATGACTATTTCCTCAACTGT 57.991 36.000 0.00 0.00 34.84 3.55
3509 8503 3.899052 ATTGCTAGTACCCGCAGTTTA 57.101 42.857 6.75 0.00 37.46 2.01
3684 8693 5.355071 CACCAAAATCTAGCAGTTGCATCTA 59.645 40.000 6.90 0.00 45.16 1.98
3763 8778 3.512516 GCAATCCAGGACCGCTGC 61.513 66.667 4.87 2.44 0.00 5.25
3975 9041 5.005779 CACCGAATGATAGTGTTAGTTCTGC 59.994 44.000 0.00 0.00 0.00 4.26
4126 9193 1.002033 GTTGTTGCAGCTTCTCTGGTG 60.002 52.381 1.17 0.00 43.06 4.17
4157 9224 3.095163 CCTGGCTGGCTCCATCCT 61.095 66.667 9.87 0.00 35.22 3.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.