Multiple sequence alignment - TraesCS2D01G549200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G549200 chr2D 100.000 6111 0 0 1 6111 624661483 624667593 0.000000e+00 11285.0
1 TraesCS2D01G549200 chr2D 97.970 197 4 0 5909 6105 624772455 624772651 5.870000e-90 342.0
2 TraesCS2D01G549200 chr2D 96.552 203 7 0 5909 6111 79760350 79760148 2.730000e-88 337.0
3 TraesCS2D01G549200 chr2D 77.727 440 68 19 2296 2709 624663236 624663671 6.120000e-60 243.0
4 TraesCS2D01G549200 chr2D 77.778 441 66 21 1754 2189 624663778 624664191 6.120000e-60 243.0
5 TraesCS2D01G549200 chr2D 100.000 28 0 0 938 965 416058798 416058771 1.100000e-02 52.8
6 TraesCS2D01G549200 chr2A 96.588 2491 70 4 2754 5234 755928832 755931317 0.000000e+00 4115.0
7 TraesCS2D01G549200 chr2A 86.017 1981 151 57 239 2182 755926307 755928198 0.000000e+00 2008.0
8 TraesCS2D01G549200 chr2A 90.859 361 28 4 5551 5908 755933011 755933369 4.280000e-131 479.0
9 TraesCS2D01G549200 chr2A 86.283 452 41 7 2236 2671 755928208 755928654 7.170000e-129 472.0
10 TraesCS2D01G549200 chr2A 91.758 182 9 4 5228 5409 755931417 755931592 1.320000e-61 248.0
11 TraesCS2D01G549200 chr2A 76.829 410 70 17 2296 2686 755927773 755928176 2.230000e-49 207.0
12 TraesCS2D01G549200 chr2A 89.630 135 6 3 5399 5533 755932810 755932936 1.360000e-36 165.0
13 TraesCS2D01G549200 chr2A 92.208 77 6 0 2665 2741 755928703 755928779 6.480000e-20 110.0
14 TraesCS2D01G549200 chr2B 95.620 2557 96 8 2745 5295 767130047 767132593 0.000000e+00 4087.0
15 TraesCS2D01G549200 chr2B 86.444 1859 97 48 1 1789 767126927 767128700 0.000000e+00 1893.0
16 TraesCS2D01G549200 chr2B 90.722 582 37 12 2099 2669 767129300 767129875 0.000000e+00 760.0
17 TraesCS2D01G549200 chr2B 95.694 209 6 3 5904 6111 646584616 646584410 3.530000e-87 333.0
18 TraesCS2D01G549200 chr7D 96.552 203 7 0 5909 6111 122934349 122934551 2.730000e-88 337.0
19 TraesCS2D01G549200 chr6D 96.552 203 7 0 5909 6111 18106829 18106627 2.730000e-88 337.0
20 TraesCS2D01G549200 chr3B 96.569 204 5 2 5909 6111 145324666 145324464 2.730000e-88 337.0
21 TraesCS2D01G549200 chr1D 96.552 203 7 0 5909 6111 220823577 220823779 2.730000e-88 337.0
22 TraesCS2D01G549200 chr5D 94.009 217 11 2 5896 6111 461506508 461506723 1.640000e-85 327.0
23 TraesCS2D01G549200 chr4D 92.760 221 16 0 5891 6111 257277993 257278213 2.750000e-83 320.0
24 TraesCS2D01G549200 chr4D 97.059 34 1 0 930 963 13247389 13247356 2.380000e-04 58.4
25 TraesCS2D01G549200 chr4D 100.000 28 0 0 938 965 147301761 147301734 1.100000e-02 52.8
26 TraesCS2D01G549200 chr3D 87.050 139 18 0 3939 4077 157343733 157343871 2.280000e-34 158.0
27 TraesCS2D01G549200 chr3D 90.244 41 2 2 925 965 79872652 79872690 1.100000e-02 52.8
28 TraesCS2D01G549200 chr3A 84.892 139 21 0 3939 4077 171041255 171041117 2.300000e-29 141.0
29 TraesCS2D01G549200 chr6A 94.000 50 3 0 5614 5663 511418875 511418924 6.570000e-10 76.8
30 TraesCS2D01G549200 chr4B 100.000 34 0 0 930 963 24015116 24015083 5.110000e-06 63.9
31 TraesCS2D01G549200 chr4A 97.143 35 1 0 930 964 589011586 589011620 6.610000e-05 60.2
32 TraesCS2D01G549200 chr5B 100.000 30 0 0 932 961 15547361 15547332 8.560000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G549200 chr2D 624661483 624667593 6110 False 11285.000000 11285 100.000000 1 6111 1 chr2D.!!$F1 6110
1 TraesCS2D01G549200 chr2D 624663236 624664191 955 False 243.000000 243 77.752500 1754 2709 2 chr2D.!!$F3 955
2 TraesCS2D01G549200 chr2A 755926307 755933369 7062 False 975.500000 4115 88.771500 239 5908 8 chr2A.!!$F1 5669
3 TraesCS2D01G549200 chr2B 767126927 767132593 5666 False 2246.666667 4087 90.928667 1 5295 3 chr2B.!!$F1 5294

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
842 876 0.106217 CACTCCCTCTCCTCCTCCTC 60.106 65.000 0.00 0.0 0.00 3.71 F
1312 1378 0.538746 TGTCGTAGGCAGTGGACTGA 60.539 55.000 11.06 0.0 46.59 3.41 F
1587 1675 1.084289 AACTGAAATCGCCGCCTTAC 58.916 50.000 0.00 0.0 0.00 2.34 F
1667 1755 4.695396 ACAAGCAAAGCAATGAATTGTGA 58.305 34.783 5.02 0.0 39.88 3.58 F
1668 1756 5.302360 ACAAGCAAAGCAATGAATTGTGAT 58.698 33.333 5.02 0.0 39.88 3.06 F
1669 1757 6.457355 ACAAGCAAAGCAATGAATTGTGATA 58.543 32.000 5.02 0.0 39.88 2.15 F
1671 1759 6.519679 AGCAAAGCAATGAATTGTGATAGA 57.480 33.333 5.02 0.0 39.88 1.98 F
3761 4433 4.100707 TCTTAATGCAGCTGTGAAATGC 57.899 40.909 16.64 0.0 40.40 3.56 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2745 3366 5.826643 ACCAATGAAAGCATTTACCCTAGA 58.173 37.500 0.00 0.00 41.87 2.43 R
2843 3504 2.344093 TTACAGAAGGGGGAGAAGCT 57.656 50.000 0.00 0.00 0.00 3.74 R
3401 4072 9.921637 ACAAGAAACAGTAAGAAAATGAAAACA 57.078 25.926 0.00 0.00 0.00 2.83 R
3590 4262 2.713927 CGTCTGCGGTATTAACAAGC 57.286 50.000 0.00 0.00 0.00 4.01 R
3717 4389 7.382110 AGATTTCATCATCCCATAACTAGACG 58.618 38.462 0.00 0.00 0.00 4.18 R
3723 4395 8.579006 TGCATTAAGATTTCATCATCCCATAAC 58.421 33.333 0.00 0.00 0.00 1.89 R
3763 4435 7.433680 CCTGTACAGATAAGTGCACATATGTA 58.566 38.462 24.68 17.37 29.90 2.29 R
5607 7672 0.027979 TTACGCGGAGATTCGTACGG 59.972 55.000 16.52 0.00 40.35 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
87 88 2.117156 GCTCACCGCTTGCCATCAT 61.117 57.895 0.00 0.00 35.14 2.45
88 89 2.020131 CTCACCGCTTGCCATCATC 58.980 57.895 0.00 0.00 0.00 2.92
105 106 1.115467 ATCATTCTCGACTCCGCCTT 58.885 50.000 0.00 0.00 35.37 4.35
119 120 2.348998 CCTTGGCAGCTCCGACTT 59.651 61.111 0.00 0.00 37.80 3.01
144 145 4.536765 ACAAGGGAGCAAAAAGAAGAAGA 58.463 39.130 0.00 0.00 0.00 2.87
150 151 5.755375 GGGAGCAAAAAGAAGAAGAAAAAGG 59.245 40.000 0.00 0.00 0.00 3.11
151 152 5.235186 GGAGCAAAAAGAAGAAGAAAAAGGC 59.765 40.000 0.00 0.00 0.00 4.35
152 153 4.805719 AGCAAAAAGAAGAAGAAAAAGGCG 59.194 37.500 0.00 0.00 0.00 5.52
161 162 0.108585 AGAAAAAGGCGAGGCTGTGA 59.891 50.000 0.00 0.00 0.00 3.58
171 172 2.094675 CGAGGCTGTGAAAATCCCATT 58.905 47.619 0.00 0.00 0.00 3.16
193 194 2.232941 GGACACATCAAAGACCCGAGTA 59.767 50.000 0.00 0.00 0.00 2.59
205 206 3.323979 AGACCCGAGTATCAAACACTTGT 59.676 43.478 0.00 0.00 33.94 3.16
210 211 4.093408 CCGAGTATCAAACACTTGTCATGG 59.907 45.833 0.00 0.00 33.94 3.66
243 261 4.993029 TCATCATCATCAAGCAATGCAA 57.007 36.364 8.35 0.00 0.00 4.08
250 268 5.599359 TCATCAAGCAATGCAACATTTTG 57.401 34.783 8.35 1.92 35.62 2.44
276 294 1.006832 CGCCCTCACGTAAATTGGAG 58.993 55.000 0.00 0.00 0.00 3.86
411 431 0.172352 CACACGCAAAAACACCACCT 59.828 50.000 0.00 0.00 0.00 4.00
420 440 0.314302 AAACACCACCTCTCGTCTCG 59.686 55.000 0.00 0.00 0.00 4.04
421 441 2.143594 AACACCACCTCTCGTCTCGC 62.144 60.000 0.00 0.00 0.00 5.03
422 442 2.034376 ACCACCTCTCGTCTCGCT 59.966 61.111 0.00 0.00 0.00 4.93
423 443 2.336478 ACCACCTCTCGTCTCGCTG 61.336 63.158 0.00 0.00 0.00 5.18
465 485 4.939368 CCCGACCCGCACCAACAA 62.939 66.667 0.00 0.00 0.00 2.83
466 486 2.902846 CCGACCCGCACCAACAAA 60.903 61.111 0.00 0.00 0.00 2.83
476 496 1.634702 CACCAACAAACCAACCAACG 58.365 50.000 0.00 0.00 0.00 4.10
477 497 1.202582 CACCAACAAACCAACCAACGA 59.797 47.619 0.00 0.00 0.00 3.85
485 505 0.734309 ACCAACCAACGAAACCGAAC 59.266 50.000 0.00 0.00 0.00 3.95
486 506 0.733729 CCAACCAACGAAACCGAACA 59.266 50.000 0.00 0.00 0.00 3.18
487 507 1.532298 CCAACCAACGAAACCGAACAC 60.532 52.381 0.00 0.00 0.00 3.32
488 508 1.130749 CAACCAACGAAACCGAACACA 59.869 47.619 0.00 0.00 0.00 3.72
489 509 1.451067 ACCAACGAAACCGAACACAA 58.549 45.000 0.00 0.00 0.00 3.33
490 510 1.130938 ACCAACGAAACCGAACACAAC 59.869 47.619 0.00 0.00 0.00 3.32
491 511 1.130749 CCAACGAAACCGAACACAACA 59.869 47.619 0.00 0.00 0.00 3.33
497 517 1.381165 AACCGAACACAACACAGCCC 61.381 55.000 0.00 0.00 0.00 5.19
498 518 2.551912 CCGAACACAACACAGCCCC 61.552 63.158 0.00 0.00 0.00 5.80
499 519 2.892334 CGAACACAACACAGCCCCG 61.892 63.158 0.00 0.00 0.00 5.73
500 520 1.822186 GAACACAACACAGCCCCGT 60.822 57.895 0.00 0.00 0.00 5.28
504 524 2.738521 CAACACAGCCCCGTCTCG 60.739 66.667 0.00 0.00 0.00 4.04
516 536 3.123620 GTCTCGGCCAAGCAGCAG 61.124 66.667 2.24 0.00 0.00 4.24
569 589 3.716195 CTCCCACCCATCCACGCA 61.716 66.667 0.00 0.00 0.00 5.24
570 590 3.976701 CTCCCACCCATCCACGCAC 62.977 68.421 0.00 0.00 0.00 5.34
833 867 3.827898 CCGCGACCACTCCCTCTC 61.828 72.222 8.23 0.00 0.00 3.20
834 868 3.827898 CGCGACCACTCCCTCTCC 61.828 72.222 0.00 0.00 0.00 3.71
835 869 2.363147 GCGACCACTCCCTCTCCT 60.363 66.667 0.00 0.00 0.00 3.69
836 870 2.419739 GCGACCACTCCCTCTCCTC 61.420 68.421 0.00 0.00 0.00 3.71
837 871 1.755008 CGACCACTCCCTCTCCTCC 60.755 68.421 0.00 0.00 0.00 4.30
838 872 1.700985 GACCACTCCCTCTCCTCCT 59.299 63.158 0.00 0.00 0.00 3.69
839 873 0.396556 GACCACTCCCTCTCCTCCTC 60.397 65.000 0.00 0.00 0.00 3.71
840 874 1.075600 CCACTCCCTCTCCTCCTCC 60.076 68.421 0.00 0.00 0.00 4.30
841 875 1.589399 CCACTCCCTCTCCTCCTCCT 61.589 65.000 0.00 0.00 0.00 3.69
842 876 0.106217 CACTCCCTCTCCTCCTCCTC 60.106 65.000 0.00 0.00 0.00 3.71
862 896 1.341913 TAATTGCTAGCCTCCCGCCA 61.342 55.000 13.29 0.00 38.78 5.69
905 940 2.421388 CCACACTCTCCGATCTCTCTCT 60.421 54.545 0.00 0.00 0.00 3.10
935 970 1.173444 CGATTCGACCCGATCCTCCT 61.173 60.000 0.00 0.00 35.23 3.69
1117 1155 8.895932 ATATTGTTGTTTCTTGCGTAGATTTC 57.104 30.769 0.00 0.00 31.54 2.17
1169 1211 3.991121 GTCAGTGTGGAGAAAGCTCTTAC 59.009 47.826 0.00 0.00 41.06 2.34
1170 1212 3.898123 TCAGTGTGGAGAAAGCTCTTACT 59.102 43.478 0.00 0.00 41.06 2.24
1173 1215 5.529060 CAGTGTGGAGAAAGCTCTTACTTTT 59.471 40.000 0.00 0.00 39.93 2.27
1174 1216 5.760743 AGTGTGGAGAAAGCTCTTACTTTTC 59.239 40.000 0.00 0.00 39.93 2.29
1175 1217 4.750098 TGTGGAGAAAGCTCTTACTTTTCG 59.250 41.667 0.00 0.00 39.93 3.46
1176 1218 3.746492 TGGAGAAAGCTCTTACTTTTCGC 59.254 43.478 0.00 0.00 39.93 4.70
1177 1219 3.746492 GGAGAAAGCTCTTACTTTTCGCA 59.254 43.478 0.00 0.00 39.93 5.10
1178 1220 4.143009 GGAGAAAGCTCTTACTTTTCGCAG 60.143 45.833 0.00 0.00 39.93 5.18
1206 1248 5.064198 GCACTGCATTTATTCCACTACGTAA 59.936 40.000 0.00 0.00 0.00 3.18
1208 1250 7.678690 GCACTGCATTTATTCCACTACGTAATT 60.679 37.037 0.00 0.00 0.00 1.40
1210 1252 7.335924 ACTGCATTTATTCCACTACGTAATTGT 59.664 33.333 0.00 0.00 0.00 2.71
1211 1253 8.719560 TGCATTTATTCCACTACGTAATTGTA 57.280 30.769 0.00 0.00 0.00 2.41
1212 1254 8.605746 TGCATTTATTCCACTACGTAATTGTAC 58.394 33.333 0.00 0.00 0.00 2.90
1282 1348 4.229304 TGTGAATCCATGTTTATCGGGT 57.771 40.909 0.00 0.00 0.00 5.28
1291 1357 4.640201 CCATGTTTATCGGGTGAAATGTCT 59.360 41.667 0.00 0.00 0.00 3.41
1299 1365 2.094906 CGGGTGAAATGTCTCTGTCGTA 60.095 50.000 0.00 0.00 0.00 3.43
1301 1367 3.512680 GGTGAAATGTCTCTGTCGTAGG 58.487 50.000 0.00 0.00 0.00 3.18
1312 1378 0.538746 TGTCGTAGGCAGTGGACTGA 60.539 55.000 11.06 0.00 46.59 3.41
1370 1436 1.257743 TAGTGTCTTCTCCAGCGCTT 58.742 50.000 7.50 0.00 0.00 4.68
1467 1540 2.970987 TCTCCGGGACCAATCATCATA 58.029 47.619 0.00 0.00 0.00 2.15
1587 1675 1.084289 AACTGAAATCGCCGCCTTAC 58.916 50.000 0.00 0.00 0.00 2.34
1667 1755 4.695396 ACAAGCAAAGCAATGAATTGTGA 58.305 34.783 5.02 0.00 39.88 3.58
1668 1756 5.302360 ACAAGCAAAGCAATGAATTGTGAT 58.698 33.333 5.02 0.00 39.88 3.06
1669 1757 6.457355 ACAAGCAAAGCAATGAATTGTGATA 58.543 32.000 5.02 0.00 39.88 2.15
1670 1758 6.588756 ACAAGCAAAGCAATGAATTGTGATAG 59.411 34.615 5.02 0.00 39.88 2.08
1671 1759 6.519679 AGCAAAGCAATGAATTGTGATAGA 57.480 33.333 5.02 0.00 39.88 1.98
1672 1760 6.927416 AGCAAAGCAATGAATTGTGATAGAA 58.073 32.000 5.02 0.00 39.88 2.10
1673 1761 7.380536 AGCAAAGCAATGAATTGTGATAGAAA 58.619 30.769 5.02 0.00 39.88 2.52
1674 1762 7.330208 AGCAAAGCAATGAATTGTGATAGAAAC 59.670 33.333 5.02 0.00 39.88 2.78
1675 1763 7.116662 GCAAAGCAATGAATTGTGATAGAAACA 59.883 33.333 5.02 0.00 39.88 2.83
1676 1764 8.644619 CAAAGCAATGAATTGTGATAGAAACAG 58.355 33.333 5.02 0.00 39.88 3.16
1677 1765 6.860080 AGCAATGAATTGTGATAGAAACAGG 58.140 36.000 5.02 0.00 39.88 4.00
1678 1766 6.660521 AGCAATGAATTGTGATAGAAACAGGA 59.339 34.615 5.02 0.00 39.88 3.86
1679 1767 7.177216 AGCAATGAATTGTGATAGAAACAGGAA 59.823 33.333 5.02 0.00 39.88 3.36
1680 1768 7.274250 GCAATGAATTGTGATAGAAACAGGAAC 59.726 37.037 5.02 0.00 39.88 3.62
1681 1769 8.517878 CAATGAATTGTGATAGAAACAGGAACT 58.482 33.333 0.00 0.00 33.52 3.01
1682 1770 9.739276 AATGAATTGTGATAGAAACAGGAACTA 57.261 29.630 0.00 0.00 36.02 2.24
1683 1771 9.911788 ATGAATTGTGATAGAAACAGGAACTAT 57.088 29.630 0.00 0.00 36.02 2.12
1684 1772 9.166173 TGAATTGTGATAGAAACAGGAACTATG 57.834 33.333 0.00 0.00 36.02 2.23
1685 1773 9.383519 GAATTGTGATAGAAACAGGAACTATGA 57.616 33.333 0.00 0.00 36.02 2.15
1686 1774 9.911788 AATTGTGATAGAAACAGGAACTATGAT 57.088 29.630 0.00 0.00 36.02 2.45
2720 3341 8.677148 ATTTTGGTATGTGCTTATACAGGTAG 57.323 34.615 11.32 0.00 35.67 3.18
2745 3366 9.010029 AGTTTCAGAAATACCAAATACGTGATT 57.990 29.630 0.00 0.00 0.00 2.57
2746 3367 9.274065 GTTTCAGAAATACCAAATACGTGATTC 57.726 33.333 0.00 0.00 0.00 2.52
2751 3372 7.931948 AGAAATACCAAATACGTGATTCTAGGG 59.068 37.037 0.00 0.00 0.00 3.53
3401 4072 8.677148 ATGTGTATGCTCCGTTAAATAGATTT 57.323 30.769 0.00 0.00 0.00 2.17
3402 4073 7.915508 TGTGTATGCTCCGTTAAATAGATTTG 58.084 34.615 0.00 0.00 0.00 2.32
3708 4380 6.531948 CACATCTAAAGTAAGTGGAGTGTAGC 59.468 42.308 0.00 0.00 0.00 3.58
3717 4389 7.097834 AGTAAGTGGAGTGTAGCAGTAAATTC 58.902 38.462 0.00 0.00 0.00 2.17
3723 4395 5.972382 GGAGTGTAGCAGTAAATTCGTCTAG 59.028 44.000 0.00 0.00 0.00 2.43
3761 4433 4.100707 TCTTAATGCAGCTGTGAAATGC 57.899 40.909 16.64 0.00 40.40 3.56
3763 4435 4.219070 TCTTAATGCAGCTGTGAAATGCTT 59.781 37.500 16.64 0.00 40.62 3.91
3803 4475 0.825010 ACAGGCTTGAGGGTTTGCAG 60.825 55.000 1.40 0.00 0.00 4.41
3963 4635 2.476873 GCAGAGAAATGCATGCTGAG 57.523 50.000 20.33 7.93 45.77 3.35
3974 4646 2.136728 GCATGCTGAGATGAGCTACAG 58.863 52.381 11.37 0.00 39.90 2.74
3980 4652 2.299582 CTGAGATGAGCTACAGGGATGG 59.700 54.545 0.00 0.00 0.00 3.51
3993 4665 4.978099 ACAGGGATGGACATTTATGCTAG 58.022 43.478 0.00 0.00 0.00 3.42
4092 4764 4.100373 ACCCTGTTATCAAAGCTCTCTCT 58.900 43.478 0.00 0.00 0.00 3.10
4139 4811 1.860950 CAGGTATGCACAGCGACATAC 59.139 52.381 10.90 10.90 45.11 2.39
4223 4895 6.777580 CCCAAATAGGTGGCTTCTTATACATT 59.222 38.462 0.00 0.00 37.34 2.71
4350 5022 0.888619 CTCTCGGTGTACTCAAGGCA 59.111 55.000 0.00 0.00 0.00 4.75
4476 5148 4.806640 ATTTTGGCCCAATGTAGAAGTG 57.193 40.909 0.00 0.00 0.00 3.16
4650 5322 2.167281 GTCACAGCTCAGGAGAATGCTA 59.833 50.000 0.00 0.00 29.87 3.49
4681 5353 1.405121 CCGAGCCGGTAAAGCTTTAGT 60.405 52.381 19.16 2.32 41.75 2.24
4716 5391 9.462606 TTCATATTCTCTACAGTGACTGAAGTA 57.537 33.333 20.97 7.73 35.18 2.24
4772 5447 3.738982 TGCTTGCAAGTTCTAACTGCTA 58.261 40.909 26.55 0.00 39.66 3.49
4819 5494 1.149854 GGTTTCACGGTGGGGAACT 59.850 57.895 8.50 0.00 0.00 3.01
4945 5620 2.581354 GCCTGCATCGACCACTCT 59.419 61.111 0.00 0.00 0.00 3.24
4987 5662 1.138883 GTCAGGTATCGACGCTGCA 59.861 57.895 0.00 0.00 0.00 4.41
5114 5789 3.135348 CCAGATATCCAGGCTGTGAAAGA 59.865 47.826 14.43 3.14 0.00 2.52
5204 5879 9.492973 TGTAATTTACCTCCTAAACTGTACAAC 57.507 33.333 0.00 0.00 0.00 3.32
5313 6094 9.289782 AGTATTATCTGCAAAGTTTTCTCTTGT 57.710 29.630 0.00 0.00 0.00 3.16
5314 6095 9.334693 GTATTATCTGCAAAGTTTTCTCTTGTG 57.665 33.333 0.00 0.00 0.00 3.33
5321 6102 4.983671 AAGTTTTCTCTTGTGTGGTTCC 57.016 40.909 0.00 0.00 0.00 3.62
5444 7452 8.612619 CCACAGTAAATAAACATCCTATGACAC 58.387 37.037 0.00 0.00 0.00 3.67
5533 7541 3.008375 TCAGTTATGCAGCCCCAGATATC 59.992 47.826 0.00 0.00 0.00 1.63
5534 7542 2.981784 AGTTATGCAGCCCCAGATATCA 59.018 45.455 5.32 0.00 0.00 2.15
5535 7543 3.077359 GTTATGCAGCCCCAGATATCAC 58.923 50.000 5.32 0.00 0.00 3.06
5536 7544 1.442773 ATGCAGCCCCAGATATCACT 58.557 50.000 5.32 0.00 0.00 3.41
5537 7545 1.216064 TGCAGCCCCAGATATCACTT 58.784 50.000 5.32 0.00 0.00 3.16
5538 7546 1.141657 TGCAGCCCCAGATATCACTTC 59.858 52.381 5.32 0.00 0.00 3.01
5553 7573 4.836125 TCACTTCAAAAGATCCTTGCAC 57.164 40.909 0.00 0.00 0.00 4.57
5554 7574 4.206375 TCACTTCAAAAGATCCTTGCACA 58.794 39.130 0.00 0.00 0.00 4.57
5572 7637 4.107622 GCACATTGCACATCTAAATGACC 58.892 43.478 0.00 0.00 44.26 4.02
5584 7649 8.627403 CACATCTAAATGACCTAATCAAGCATT 58.373 33.333 0.00 0.00 41.93 3.56
5595 7660 9.358872 GACCTAATCAAGCATTAAAAGGAAAAG 57.641 33.333 0.00 0.00 0.00 2.27
5601 7666 9.625747 ATCAAGCATTAAAAGGAAAAGGAAAAA 57.374 25.926 0.00 0.00 0.00 1.94
5647 7714 8.023128 GCGTAAAATCAATGGCATATGACTTAT 58.977 33.333 10.60 0.00 0.00 1.73
5667 7734 7.287061 ACTTATATGTGCAATACTTAGGGCAA 58.713 34.615 0.00 0.00 38.10 4.52
5672 7739 4.398988 TGTGCAATACTTAGGGCAAATCTG 59.601 41.667 0.00 0.00 38.10 2.90
5719 7787 8.673626 ATCTTTATTTAGTTGCAACATTGTCG 57.326 30.769 30.11 11.83 0.00 4.35
5731 7799 4.025813 GCAACATTGTCGCAACATTTTCTT 60.026 37.500 0.00 0.00 34.73 2.52
5735 7803 5.459762 ACATTGTCGCAACATTTTCTTCAAG 59.540 36.000 0.00 0.00 34.73 3.02
5746 7814 5.176958 ACATTTTCTTCAAGGTAAGTCGTCG 59.823 40.000 0.00 0.00 0.00 5.12
5748 7816 1.610038 TCTTCAAGGTAAGTCGTCGCA 59.390 47.619 0.00 0.00 0.00 5.10
5763 7831 1.135689 GTCGCAACATTCCGAAAGCAT 60.136 47.619 0.00 0.00 35.00 3.79
5764 7832 1.135717 TCGCAACATTCCGAAAGCATG 60.136 47.619 0.00 0.00 0.00 4.06
5791 7859 3.068590 CAGCAACATATCCCCAAATGGTC 59.931 47.826 0.00 0.00 0.00 4.02
5840 7908 4.987408 TGCACGTAATGGTAAGCTACTA 57.013 40.909 0.00 0.00 0.00 1.82
5863 7931 1.238439 AGCAGTTCCAACACAATCGG 58.762 50.000 0.00 0.00 0.00 4.18
5887 7955 6.183360 GGATGAAGATTAATGTTGATGGTGCA 60.183 38.462 2.01 0.00 0.00 4.57
5892 7960 7.172868 AGATTAATGTTGATGGTGCAATTGA 57.827 32.000 10.34 0.00 0.00 2.57
5893 7961 7.613585 AGATTAATGTTGATGGTGCAATTGAA 58.386 30.769 10.34 0.00 0.00 2.69
5894 7962 8.262227 AGATTAATGTTGATGGTGCAATTGAAT 58.738 29.630 10.34 0.00 0.00 2.57
5895 7963 7.598189 TTAATGTTGATGGTGCAATTGAATG 57.402 32.000 10.34 0.00 0.00 2.67
5908 7976 4.756135 GCAATTGAATGTGAAAATGGGTGT 59.244 37.500 10.34 0.00 0.00 4.16
5909 7977 5.334260 GCAATTGAATGTGAAAATGGGTGTG 60.334 40.000 10.34 0.00 0.00 3.82
5910 7978 5.804944 ATTGAATGTGAAAATGGGTGTGA 57.195 34.783 0.00 0.00 0.00 3.58
5911 7979 4.852134 TGAATGTGAAAATGGGTGTGAG 57.148 40.909 0.00 0.00 0.00 3.51
5912 7980 3.573538 TGAATGTGAAAATGGGTGTGAGG 59.426 43.478 0.00 0.00 0.00 3.86
5913 7981 1.993956 TGTGAAAATGGGTGTGAGGG 58.006 50.000 0.00 0.00 0.00 4.30
5914 7982 1.496857 TGTGAAAATGGGTGTGAGGGA 59.503 47.619 0.00 0.00 0.00 4.20
5915 7983 2.162681 GTGAAAATGGGTGTGAGGGAG 58.837 52.381 0.00 0.00 0.00 4.30
5916 7984 1.780309 TGAAAATGGGTGTGAGGGAGT 59.220 47.619 0.00 0.00 0.00 3.85
5917 7985 2.224769 TGAAAATGGGTGTGAGGGAGTC 60.225 50.000 0.00 0.00 0.00 3.36
5918 7986 0.698818 AAATGGGTGTGAGGGAGTCC 59.301 55.000 0.00 0.00 0.00 3.85
5920 7988 0.911525 ATGGGTGTGAGGGAGTCCTG 60.912 60.000 9.58 0.00 45.05 3.86
5921 7989 2.294078 GGGTGTGAGGGAGTCCTGG 61.294 68.421 9.58 0.00 45.05 4.45
5922 7990 1.229209 GGTGTGAGGGAGTCCTGGA 60.229 63.158 9.58 0.00 45.05 3.86
5923 7991 1.545706 GGTGTGAGGGAGTCCTGGAC 61.546 65.000 19.20 19.20 45.05 4.02
5924 7992 0.543174 GTGTGAGGGAGTCCTGGACT 60.543 60.000 28.70 28.70 46.42 3.85
5925 7993 1.081481 TGTGAGGGAGTCCTGGACTA 58.919 55.000 28.41 10.70 43.53 2.59
5926 7994 1.431633 TGTGAGGGAGTCCTGGACTAA 59.568 52.381 28.41 9.96 43.53 2.24
5927 7995 2.104170 GTGAGGGAGTCCTGGACTAAG 58.896 57.143 28.41 0.00 43.53 2.18
5928 7996 1.007238 TGAGGGAGTCCTGGACTAAGG 59.993 57.143 28.41 0.00 43.53 2.69
5929 7997 0.340208 AGGGAGTCCTGGACTAAGGG 59.660 60.000 28.41 0.00 43.53 3.95
5930 7998 0.691413 GGGAGTCCTGGACTAAGGGG 60.691 65.000 28.41 0.00 43.53 4.79
5931 7999 0.042881 GGAGTCCTGGACTAAGGGGT 59.957 60.000 28.41 5.74 43.53 4.95
5932 8000 1.487300 GAGTCCTGGACTAAGGGGTC 58.513 60.000 28.41 11.40 43.53 4.46
5938 8006 3.951765 GACTAAGGGGTCCTCGGG 58.048 66.667 0.00 0.00 30.89 5.14
5939 8007 2.365237 ACTAAGGGGTCCTCGGGC 60.365 66.667 0.00 0.00 30.89 6.13
5940 8008 3.537874 CTAAGGGGTCCTCGGGCG 61.538 72.222 0.00 0.00 30.89 6.13
5941 8009 4.387343 TAAGGGGTCCTCGGGCGT 62.387 66.667 0.00 0.00 30.89 5.68
5953 8021 2.183555 GGGCGTCCGGTCTGTTAG 59.816 66.667 0.00 0.00 0.00 2.34
5954 8022 2.508663 GGCGTCCGGTCTGTTAGC 60.509 66.667 0.00 0.00 0.00 3.09
5955 8023 2.508663 GCGTCCGGTCTGTTAGCC 60.509 66.667 0.00 0.00 0.00 3.93
5956 8024 2.967397 CGTCCGGTCTGTTAGCCA 59.033 61.111 0.00 0.00 0.00 4.75
5957 8025 1.515954 CGTCCGGTCTGTTAGCCAT 59.484 57.895 0.00 0.00 0.00 4.40
5958 8026 0.806102 CGTCCGGTCTGTTAGCCATG 60.806 60.000 0.00 0.00 0.00 3.66
5959 8027 0.462047 GTCCGGTCTGTTAGCCATGG 60.462 60.000 7.63 7.63 0.00 3.66
5960 8028 1.153168 CCGGTCTGTTAGCCATGGG 60.153 63.158 15.13 0.00 0.00 4.00
5970 8038 4.195334 GCCATGGGCCGGACTGAT 62.195 66.667 15.13 0.00 44.06 2.90
5971 8039 2.203252 CCATGGGCCGGACTGATG 60.203 66.667 7.57 10.25 0.00 3.07
5972 8040 2.203252 CATGGGCCGGACTGATGG 60.203 66.667 7.57 0.00 0.00 3.51
5973 8041 3.492353 ATGGGCCGGACTGATGGG 61.492 66.667 7.57 0.00 0.00 4.00
5976 8044 4.864334 GGCCGGACTGATGGGCTG 62.864 72.222 5.05 0.00 46.62 4.85
5977 8045 4.101448 GCCGGACTGATGGGCTGT 62.101 66.667 5.05 0.00 43.52 4.40
5978 8046 2.124983 CCGGACTGATGGGCTGTG 60.125 66.667 0.00 0.00 0.00 3.66
5979 8047 2.659063 CCGGACTGATGGGCTGTGA 61.659 63.158 0.00 0.00 0.00 3.58
5980 8048 1.296392 CGGACTGATGGGCTGTGAA 59.704 57.895 0.00 0.00 0.00 3.18
5981 8049 0.742281 CGGACTGATGGGCTGTGAAG 60.742 60.000 0.00 0.00 0.00 3.02
5982 8050 0.615331 GGACTGATGGGCTGTGAAGA 59.385 55.000 0.00 0.00 0.00 2.87
5983 8051 1.211457 GGACTGATGGGCTGTGAAGAT 59.789 52.381 0.00 0.00 0.00 2.40
5984 8052 2.435805 GGACTGATGGGCTGTGAAGATA 59.564 50.000 0.00 0.00 0.00 1.98
5985 8053 3.462021 GACTGATGGGCTGTGAAGATAC 58.538 50.000 0.00 0.00 0.00 2.24
5986 8054 2.159043 ACTGATGGGCTGTGAAGATACG 60.159 50.000 0.00 0.00 0.00 3.06
5987 8055 2.101415 CTGATGGGCTGTGAAGATACGA 59.899 50.000 0.00 0.00 0.00 3.43
5988 8056 2.499693 TGATGGGCTGTGAAGATACGAA 59.500 45.455 0.00 0.00 0.00 3.85
5989 8057 2.672961 TGGGCTGTGAAGATACGAAG 57.327 50.000 0.00 0.00 0.00 3.79
5990 8058 2.176045 TGGGCTGTGAAGATACGAAGA 58.824 47.619 0.00 0.00 0.00 2.87
5991 8059 2.094182 TGGGCTGTGAAGATACGAAGAC 60.094 50.000 0.00 0.00 0.00 3.01
5992 8060 2.541556 GGCTGTGAAGATACGAAGACC 58.458 52.381 0.00 0.00 0.00 3.85
5993 8061 2.186076 GCTGTGAAGATACGAAGACCG 58.814 52.381 0.00 0.00 45.44 4.79
5994 8062 2.159421 GCTGTGAAGATACGAAGACCGA 60.159 50.000 0.00 0.00 41.76 4.69
5995 8063 3.672511 GCTGTGAAGATACGAAGACCGAA 60.673 47.826 0.00 0.00 41.76 4.30
5996 8064 4.092771 TGTGAAGATACGAAGACCGAAG 57.907 45.455 0.00 0.00 41.76 3.79
5997 8065 3.754850 TGTGAAGATACGAAGACCGAAGA 59.245 43.478 0.00 0.00 41.76 2.87
5998 8066 4.097012 GTGAAGATACGAAGACCGAAGAC 58.903 47.826 0.00 0.00 41.76 3.01
5999 8067 4.008330 TGAAGATACGAAGACCGAAGACT 58.992 43.478 0.00 0.00 41.76 3.24
6000 8068 4.094590 TGAAGATACGAAGACCGAAGACTC 59.905 45.833 0.00 0.00 41.76 3.36
6001 8069 2.944349 AGATACGAAGACCGAAGACTCC 59.056 50.000 0.00 0.00 41.76 3.85
6002 8070 2.189594 TACGAAGACCGAAGACTCCA 57.810 50.000 0.00 0.00 41.76 3.86
6003 8071 0.597072 ACGAAGACCGAAGACTCCAC 59.403 55.000 0.00 0.00 41.76 4.02
6004 8072 0.109226 CGAAGACCGAAGACTCCACC 60.109 60.000 0.00 0.00 41.76 4.61
6005 8073 0.246910 GAAGACCGAAGACTCCACCC 59.753 60.000 0.00 0.00 0.00 4.61
6006 8074 1.533469 AAGACCGAAGACTCCACCCG 61.533 60.000 0.00 0.00 0.00 5.28
6007 8075 2.203596 ACCGAAGACTCCACCCGT 60.204 61.111 0.00 0.00 0.00 5.28
6008 8076 2.261671 CCGAAGACTCCACCCGTG 59.738 66.667 0.00 0.00 0.00 4.94
6009 8077 2.571216 CCGAAGACTCCACCCGTGT 61.571 63.158 0.00 0.00 0.00 4.49
6010 8078 1.080705 CGAAGACTCCACCCGTGTC 60.081 63.158 0.00 0.00 35.60 3.67
6011 8079 1.292541 GAAGACTCCACCCGTGTCC 59.707 63.158 0.00 0.00 35.92 4.02
6012 8080 2.488087 GAAGACTCCACCCGTGTCCG 62.488 65.000 0.00 0.00 35.92 4.79
6026 8094 3.440023 TCCGGATGGGACTCTCCT 58.560 61.111 0.00 0.00 40.94 3.69
6027 8095 1.704082 TCCGGATGGGACTCTCCTT 59.296 57.895 0.00 0.00 40.94 3.36
6028 8096 0.042731 TCCGGATGGGACTCTCCTTT 59.957 55.000 0.00 0.00 40.94 3.11
6029 8097 0.179000 CCGGATGGGACTCTCCTTTG 59.821 60.000 0.00 0.00 38.47 2.77
6030 8098 0.905357 CGGATGGGACTCTCCTTTGT 59.095 55.000 0.00 0.00 36.57 2.83
6031 8099 1.406069 CGGATGGGACTCTCCTTTGTG 60.406 57.143 0.00 0.00 36.57 3.33
6032 8100 1.630878 GGATGGGACTCTCCTTTGTGT 59.369 52.381 0.00 0.00 36.57 3.72
6033 8101 2.616510 GGATGGGACTCTCCTTTGTGTG 60.617 54.545 0.00 0.00 36.57 3.82
6034 8102 0.764890 TGGGACTCTCCTTTGTGTGG 59.235 55.000 0.00 0.00 36.57 4.17
6035 8103 1.056660 GGGACTCTCCTTTGTGTGGA 58.943 55.000 0.00 0.00 36.57 4.02
6036 8104 1.420138 GGGACTCTCCTTTGTGTGGAA 59.580 52.381 0.00 0.00 36.57 3.53
6037 8105 2.551071 GGGACTCTCCTTTGTGTGGAAG 60.551 54.545 0.00 0.00 36.57 3.46
6038 8106 2.551071 GGACTCTCCTTTGTGTGGAAGG 60.551 54.545 0.00 0.00 44.06 3.46
6039 8107 1.202818 ACTCTCCTTTGTGTGGAAGGC 60.203 52.381 0.00 0.00 42.73 4.35
6040 8108 0.843309 TCTCCTTTGTGTGGAAGGCA 59.157 50.000 0.00 0.00 42.73 4.75
6041 8109 1.214175 TCTCCTTTGTGTGGAAGGCAA 59.786 47.619 0.00 0.00 42.73 4.52
6042 8110 1.610522 CTCCTTTGTGTGGAAGGCAAG 59.389 52.381 0.00 0.00 42.73 4.01
6043 8111 0.032540 CCTTTGTGTGGAAGGCAAGC 59.967 55.000 0.00 0.00 37.45 4.01
6044 8112 1.035139 CTTTGTGTGGAAGGCAAGCT 58.965 50.000 0.00 0.00 0.00 3.74
6045 8113 1.410153 CTTTGTGTGGAAGGCAAGCTT 59.590 47.619 0.00 0.00 0.00 3.74
6046 8114 0.746063 TTGTGTGGAAGGCAAGCTTG 59.254 50.000 22.44 22.44 0.00 4.01
6047 8115 1.108727 TGTGTGGAAGGCAAGCTTGG 61.109 55.000 27.10 9.80 0.00 3.61
6054 8122 3.277133 GGCAAGCTTGGCGATCAA 58.723 55.556 33.68 0.00 43.97 2.57
6055 8123 1.586028 GGCAAGCTTGGCGATCAAA 59.414 52.632 33.68 0.00 43.97 2.69
6056 8124 0.733909 GGCAAGCTTGGCGATCAAAC 60.734 55.000 33.68 11.34 43.97 2.93
6057 8125 0.039256 GCAAGCTTGGCGATCAAACA 60.039 50.000 27.10 0.00 34.56 2.83
6058 8126 1.403249 GCAAGCTTGGCGATCAAACAT 60.403 47.619 27.10 0.00 34.56 2.71
6059 8127 2.256174 CAAGCTTGGCGATCAAACATG 58.744 47.619 19.14 0.00 34.56 3.21
6060 8128 1.825090 AGCTTGGCGATCAAACATGA 58.175 45.000 0.00 0.00 34.56 3.07
6061 8129 2.161855 AGCTTGGCGATCAAACATGAA 58.838 42.857 0.00 0.00 34.56 2.57
6062 8130 2.163010 AGCTTGGCGATCAAACATGAAG 59.837 45.455 0.00 0.00 34.56 3.02
6063 8131 2.162208 GCTTGGCGATCAAACATGAAGA 59.838 45.455 0.00 0.00 34.56 2.87
6064 8132 3.181493 GCTTGGCGATCAAACATGAAGAT 60.181 43.478 0.00 0.00 34.56 2.40
6065 8133 4.676196 GCTTGGCGATCAAACATGAAGATT 60.676 41.667 0.00 0.00 34.56 2.40
6066 8134 4.621068 TGGCGATCAAACATGAAGATTC 57.379 40.909 0.00 0.00 0.00 2.52
6067 8135 3.378112 TGGCGATCAAACATGAAGATTCC 59.622 43.478 0.00 6.03 0.00 3.01
6068 8136 3.629398 GGCGATCAAACATGAAGATTCCT 59.371 43.478 0.00 0.00 0.00 3.36
6069 8137 4.096984 GGCGATCAAACATGAAGATTCCTT 59.903 41.667 0.00 0.00 34.81 3.36
6070 8138 5.393461 GGCGATCAAACATGAAGATTCCTTT 60.393 40.000 0.00 0.00 31.62 3.11
6071 8139 5.741040 GCGATCAAACATGAAGATTCCTTTC 59.259 40.000 0.00 0.00 31.62 2.62
6072 8140 6.404074 GCGATCAAACATGAAGATTCCTTTCT 60.404 38.462 0.00 0.00 31.62 2.52
6073 8141 7.185453 CGATCAAACATGAAGATTCCTTTCTC 58.815 38.462 0.00 0.00 31.62 2.87
6074 8142 7.065563 CGATCAAACATGAAGATTCCTTTCTCT 59.934 37.037 0.00 0.00 31.62 3.10
6075 8143 7.444629 TCAAACATGAAGATTCCTTTCTCTG 57.555 36.000 0.00 0.00 31.62 3.35
6076 8144 7.000472 TCAAACATGAAGATTCCTTTCTCTGT 59.000 34.615 0.00 0.00 31.62 3.41
6077 8145 8.156820 TCAAACATGAAGATTCCTTTCTCTGTA 58.843 33.333 0.00 0.00 31.62 2.74
6078 8146 8.786898 CAAACATGAAGATTCCTTTCTCTGTAA 58.213 33.333 0.00 0.00 31.62 2.41
6079 8147 7.913674 ACATGAAGATTCCTTTCTCTGTAAC 57.086 36.000 0.00 0.00 31.62 2.50
6080 8148 6.881602 ACATGAAGATTCCTTTCTCTGTAACC 59.118 38.462 0.00 0.00 31.62 2.85
6081 8149 5.479306 TGAAGATTCCTTTCTCTGTAACCG 58.521 41.667 0.00 0.00 31.62 4.44
6082 8150 5.245301 TGAAGATTCCTTTCTCTGTAACCGA 59.755 40.000 0.00 0.00 31.62 4.69
6083 8151 5.074584 AGATTCCTTTCTCTGTAACCGAC 57.925 43.478 0.00 0.00 0.00 4.79
6084 8152 3.672767 TTCCTTTCTCTGTAACCGACC 57.327 47.619 0.00 0.00 0.00 4.79
6085 8153 2.885616 TCCTTTCTCTGTAACCGACCT 58.114 47.619 0.00 0.00 0.00 3.85
6086 8154 3.236896 TCCTTTCTCTGTAACCGACCTT 58.763 45.455 0.00 0.00 0.00 3.50
6087 8155 3.006537 TCCTTTCTCTGTAACCGACCTTG 59.993 47.826 0.00 0.00 0.00 3.61
6088 8156 3.244112 CCTTTCTCTGTAACCGACCTTGT 60.244 47.826 0.00 0.00 0.00 3.16
6089 8157 3.380479 TTCTCTGTAACCGACCTTGTG 57.620 47.619 0.00 0.00 0.00 3.33
6090 8158 2.313317 TCTCTGTAACCGACCTTGTGT 58.687 47.619 0.00 0.00 0.00 3.72
6091 8159 3.489355 TCTCTGTAACCGACCTTGTGTA 58.511 45.455 0.00 0.00 0.00 2.90
6092 8160 3.890756 TCTCTGTAACCGACCTTGTGTAA 59.109 43.478 0.00 0.00 0.00 2.41
6093 8161 3.981211 TCTGTAACCGACCTTGTGTAAC 58.019 45.455 0.00 0.00 37.35 2.50
6094 8162 3.062042 CTGTAACCGACCTTGTGTAACC 58.938 50.000 0.00 0.00 34.36 2.85
6095 8163 2.224257 TGTAACCGACCTTGTGTAACCC 60.224 50.000 0.00 0.00 34.36 4.11
6096 8164 1.134228 AACCGACCTTGTGTAACCCT 58.866 50.000 0.00 0.00 34.36 4.34
6097 8165 2.014010 ACCGACCTTGTGTAACCCTA 57.986 50.000 0.00 0.00 34.36 3.53
6098 8166 1.897802 ACCGACCTTGTGTAACCCTAG 59.102 52.381 0.00 0.00 34.36 3.02
6099 8167 2.173519 CCGACCTTGTGTAACCCTAGA 58.826 52.381 0.00 0.00 34.36 2.43
6100 8168 2.764572 CCGACCTTGTGTAACCCTAGAT 59.235 50.000 0.00 0.00 34.36 1.98
6101 8169 3.181478 CCGACCTTGTGTAACCCTAGATC 60.181 52.174 0.00 0.00 34.36 2.75
6102 8170 3.181478 CGACCTTGTGTAACCCTAGATCC 60.181 52.174 0.00 0.00 34.36 3.36
6103 8171 3.113043 ACCTTGTGTAACCCTAGATCCC 58.887 50.000 0.00 0.00 34.36 3.85
6104 8172 3.246387 ACCTTGTGTAACCCTAGATCCCT 60.246 47.826 0.00 0.00 34.36 4.20
6105 8173 3.388350 CCTTGTGTAACCCTAGATCCCTC 59.612 52.174 0.00 0.00 34.36 4.30
6106 8174 3.042059 TGTGTAACCCTAGATCCCTCC 57.958 52.381 0.00 0.00 34.36 4.30
6107 8175 1.962100 GTGTAACCCTAGATCCCTCCG 59.038 57.143 0.00 0.00 0.00 4.63
6108 8176 1.133262 TGTAACCCTAGATCCCTCCGG 60.133 57.143 0.00 0.00 0.00 5.14
6109 8177 1.133231 GTAACCCTAGATCCCTCCGGT 60.133 57.143 0.00 0.00 0.00 5.28
6110 8178 0.398664 AACCCTAGATCCCTCCGGTG 60.399 60.000 0.00 0.00 0.00 4.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 2.783510 TCTGGTCCCTTTCCAAGTTCTT 59.216 45.455 0.00 0.00 34.35 2.52
46 47 2.985847 GGTTGCAGTGGCCCAGAC 60.986 66.667 0.00 0.00 40.13 3.51
87 88 0.173481 CAAGGCGGAGTCGAGAATGA 59.827 55.000 0.00 0.00 36.95 2.57
88 89 0.807667 CCAAGGCGGAGTCGAGAATG 60.808 60.000 0.00 0.00 36.95 2.67
105 106 1.301716 GTTGAAGTCGGAGCTGCCA 60.302 57.895 0.00 0.00 35.94 4.92
119 120 4.277476 TCTTCTTTTTGCTCCCTTGTTGA 58.723 39.130 0.00 0.00 0.00 3.18
144 145 1.398692 TTTCACAGCCTCGCCTTTTT 58.601 45.000 0.00 0.00 0.00 1.94
150 151 0.960364 TGGGATTTTCACAGCCTCGC 60.960 55.000 0.00 0.00 0.00 5.03
151 152 1.755179 ATGGGATTTTCACAGCCTCG 58.245 50.000 0.00 0.00 30.64 4.63
152 153 2.167075 CCAATGGGATTTTCACAGCCTC 59.833 50.000 0.00 0.00 30.64 4.70
171 172 1.001974 CTCGGGTCTTTGATGTGTCCA 59.998 52.381 0.00 0.00 0.00 4.02
174 175 3.513912 TGATACTCGGGTCTTTGATGTGT 59.486 43.478 0.00 0.00 0.00 3.72
193 194 3.890756 TCAAGCCATGACAAGTGTTTGAT 59.109 39.130 0.00 0.00 37.73 2.57
205 206 4.528920 TGATGATGATGTTCAAGCCATGA 58.471 39.130 0.00 0.00 35.85 3.07
210 211 6.313744 TGATGATGATGATGATGTTCAAGC 57.686 37.500 0.00 0.00 0.00 4.01
243 261 4.189231 GTGAGGGCGTCTATACAAAATGT 58.811 43.478 8.82 0.00 0.00 2.71
250 268 3.698029 TTTACGTGAGGGCGTCTATAC 57.302 47.619 8.82 0.00 44.55 1.47
267 285 2.403378 GCGCCCGTGCTCCAATTTA 61.403 57.895 0.00 0.00 34.43 1.40
273 291 2.744709 TTTAAGCGCCCGTGCTCC 60.745 61.111 2.29 0.00 46.60 4.70
276 294 4.454717 CCGTTTAAGCGCCCGTGC 62.455 66.667 2.29 0.00 0.00 5.34
358 377 3.206957 GGTTATTGCCGCCGGGAC 61.207 66.667 4.77 0.00 34.06 4.46
393 413 0.454196 GAGGTGGTGTTTTTGCGTGT 59.546 50.000 0.00 0.00 0.00 4.49
411 431 1.963172 TTATAGCCAGCGAGACGAGA 58.037 50.000 0.00 0.00 0.00 4.04
420 440 3.064958 GGAAGGTTCGTTTTATAGCCAGC 59.935 47.826 0.00 0.00 0.00 4.85
421 441 4.514401 AGGAAGGTTCGTTTTATAGCCAG 58.486 43.478 0.00 0.00 0.00 4.85
422 442 4.510571 GAGGAAGGTTCGTTTTATAGCCA 58.489 43.478 0.00 0.00 0.00 4.75
423 443 3.554731 CGAGGAAGGTTCGTTTTATAGCC 59.445 47.826 0.00 0.00 33.57 3.93
464 484 1.461559 TCGGTTTCGTTGGTTGGTTT 58.538 45.000 0.00 0.00 37.69 3.27
465 485 1.132834 GTTCGGTTTCGTTGGTTGGTT 59.867 47.619 0.00 0.00 37.69 3.67
466 486 0.734309 GTTCGGTTTCGTTGGTTGGT 59.266 50.000 0.00 0.00 37.69 3.67
476 496 1.533129 GGCTGTGTTGTGTTCGGTTTC 60.533 52.381 0.00 0.00 0.00 2.78
477 497 0.454196 GGCTGTGTTGTGTTCGGTTT 59.546 50.000 0.00 0.00 0.00 3.27
485 505 1.961277 GAGACGGGGCTGTGTTGTG 60.961 63.158 0.00 0.00 0.00 3.33
486 506 2.426023 GAGACGGGGCTGTGTTGT 59.574 61.111 0.00 0.00 0.00 3.32
487 507 2.738521 CGAGACGGGGCTGTGTTG 60.739 66.667 0.00 0.00 0.00 3.33
488 508 4.003788 CCGAGACGGGGCTGTGTT 62.004 66.667 2.00 0.00 44.15 3.32
499 519 3.123620 CTGCTGCTTGGCCGAGAC 61.124 66.667 25.25 15.10 0.00 3.36
531 551 4.459089 GTGCGAGAGGGAGGTGCC 62.459 72.222 0.00 0.00 0.00 5.01
532 552 3.363844 GAGTGCGAGAGGGAGGTGC 62.364 68.421 0.00 0.00 0.00 5.01
533 553 2.888863 GAGTGCGAGAGGGAGGTG 59.111 66.667 0.00 0.00 0.00 4.00
534 554 2.752238 CGAGTGCGAGAGGGAGGT 60.752 66.667 0.00 0.00 40.82 3.85
535 555 4.200283 GCGAGTGCGAGAGGGAGG 62.200 72.222 0.00 0.00 40.82 4.30
828 862 2.632512 GCAATTAGAGGAGGAGGAGAGG 59.367 54.545 0.00 0.00 0.00 3.69
829 863 3.575805 AGCAATTAGAGGAGGAGGAGAG 58.424 50.000 0.00 0.00 0.00 3.20
830 864 3.697190 AGCAATTAGAGGAGGAGGAGA 57.303 47.619 0.00 0.00 0.00 3.71
831 865 3.258123 GCTAGCAATTAGAGGAGGAGGAG 59.742 52.174 10.63 0.00 0.00 3.69
832 866 3.235200 GCTAGCAATTAGAGGAGGAGGA 58.765 50.000 10.63 0.00 0.00 3.71
833 867 2.301583 GGCTAGCAATTAGAGGAGGAGG 59.698 54.545 18.24 0.00 0.00 4.30
834 868 3.238597 AGGCTAGCAATTAGAGGAGGAG 58.761 50.000 18.24 0.00 0.00 3.69
835 869 3.235200 GAGGCTAGCAATTAGAGGAGGA 58.765 50.000 18.24 0.00 0.00 3.71
836 870 2.301583 GGAGGCTAGCAATTAGAGGAGG 59.698 54.545 18.24 0.00 0.00 4.30
837 871 2.301583 GGGAGGCTAGCAATTAGAGGAG 59.698 54.545 18.24 0.00 0.00 3.69
838 872 2.330216 GGGAGGCTAGCAATTAGAGGA 58.670 52.381 18.24 0.00 0.00 3.71
839 873 1.001406 CGGGAGGCTAGCAATTAGAGG 59.999 57.143 18.24 0.00 0.00 3.69
840 874 1.606737 GCGGGAGGCTAGCAATTAGAG 60.607 57.143 18.24 2.40 39.11 2.43
841 875 0.393077 GCGGGAGGCTAGCAATTAGA 59.607 55.000 18.24 0.00 39.11 2.10
842 876 2.919971 GCGGGAGGCTAGCAATTAG 58.080 57.895 18.24 5.73 39.11 1.73
905 940 1.201647 GGTCGAATCGGAACAGAGTCA 59.798 52.381 1.76 0.00 35.22 3.41
1117 1155 5.163519 ACTGAACACATCAAAACTGGAAAGG 60.164 40.000 0.00 0.00 37.67 3.11
1176 1218 3.119884 TGGAATAAATGCAGTGCGAACTG 60.120 43.478 19.95 19.95 40.51 3.16
1177 1219 3.081061 TGGAATAAATGCAGTGCGAACT 58.919 40.909 11.20 0.00 0.00 3.01
1178 1220 3.119849 AGTGGAATAAATGCAGTGCGAAC 60.120 43.478 11.20 0.00 30.92 3.95
1206 1248 3.057596 CACCGCTGGAAACAATGTACAAT 60.058 43.478 0.00 0.00 42.06 2.71
1208 1250 1.876799 CACCGCTGGAAACAATGTACA 59.123 47.619 0.00 0.00 42.06 2.90
1210 1252 1.876799 CACACCGCTGGAAACAATGTA 59.123 47.619 1.50 0.00 42.06 2.29
1211 1253 0.667993 CACACCGCTGGAAACAATGT 59.332 50.000 1.50 0.00 42.06 2.71
1212 1254 0.667993 ACACACCGCTGGAAACAATG 59.332 50.000 1.50 0.00 42.06 2.82
1268 1334 4.640201 AGACATTTCACCCGATAAACATGG 59.360 41.667 0.00 0.00 0.00 3.66
1282 1348 2.560981 TGCCTACGACAGAGACATTTCA 59.439 45.455 0.00 0.00 0.00 2.69
1291 1357 0.251209 AGTCCACTGCCTACGACAGA 60.251 55.000 0.00 0.00 38.55 3.41
1299 1365 3.052081 GACGTCAGTCCACTGCCT 58.948 61.111 11.55 0.00 43.46 4.75
1312 1378 3.627577 GTCAATTAGCATGATTGGGACGT 59.372 43.478 0.00 0.00 35.66 4.34
1370 1436 6.044404 TGGTCCAATAATTTTTGCCCCTTTTA 59.956 34.615 3.34 0.00 0.00 1.52
1427 1500 1.444933 TGAGTGGTGGTCCCTGAAAT 58.555 50.000 0.00 0.00 0.00 2.17
1587 1675 3.434299 ACGGCACTTTTATTTGTCTACCG 59.566 43.478 0.00 0.00 42.42 4.02
1596 1684 2.981400 CGACCAACGGCACTTTTATT 57.019 45.000 0.00 0.00 38.46 1.40
1673 1761 9.647918 TCTCTGTTTCTATATCATAGTTCCTGT 57.352 33.333 0.00 0.00 0.00 4.00
2720 3341 9.274065 GAATCACGTATTTGGTATTTCTGAAAC 57.726 33.333 4.73 0.00 0.00 2.78
2734 3355 7.280356 AGCATTTACCCTAGAATCACGTATTT 58.720 34.615 0.00 0.00 0.00 1.40
2741 3362 7.068593 CCAATGAAAGCATTTACCCTAGAATCA 59.931 37.037 0.00 0.00 41.87 2.57
2745 3366 5.826643 ACCAATGAAAGCATTTACCCTAGA 58.173 37.500 0.00 0.00 41.87 2.43
2746 3367 6.530019 AACCAATGAAAGCATTTACCCTAG 57.470 37.500 0.00 0.00 41.87 3.02
2751 3372 7.861176 TCGTAAAACCAATGAAAGCATTTAC 57.139 32.000 0.00 0.00 41.87 2.01
2843 3504 2.344093 TTACAGAAGGGGGAGAAGCT 57.656 50.000 0.00 0.00 0.00 3.74
3401 4072 9.921637 ACAAGAAACAGTAAGAAAATGAAAACA 57.078 25.926 0.00 0.00 0.00 2.83
3590 4262 2.713927 CGTCTGCGGTATTAACAAGC 57.286 50.000 0.00 0.00 0.00 4.01
3708 4380 8.141909 TCATCCCATAACTAGACGAATTTACTG 58.858 37.037 0.00 0.00 0.00 2.74
3717 4389 7.382110 AGATTTCATCATCCCATAACTAGACG 58.618 38.462 0.00 0.00 0.00 4.18
3723 4395 8.579006 TGCATTAAGATTTCATCATCCCATAAC 58.421 33.333 0.00 0.00 0.00 1.89
3761 4433 8.871686 TGTACAGATAAGTGCACATATGTAAG 57.128 34.615 18.67 7.09 32.39 2.34
3763 4435 7.433680 CCTGTACAGATAAGTGCACATATGTA 58.566 38.462 24.68 17.37 29.90 2.29
3803 4475 4.278678 GCACCACTGCAATACTTCATAC 57.721 45.455 0.00 0.00 43.62 2.39
3918 4590 9.476202 CTGACCTGATGAATATGTAAATACGAA 57.524 33.333 0.00 0.00 0.00 3.85
3921 4593 8.607441 TGCTGACCTGATGAATATGTAAATAC 57.393 34.615 0.00 0.00 0.00 1.89
3963 4635 2.042464 TGTCCATCCCTGTAGCTCATC 58.958 52.381 0.00 0.00 0.00 2.92
3974 4646 5.376625 TGTTCTAGCATAAATGTCCATCCC 58.623 41.667 0.00 0.00 0.00 3.85
3980 4652 6.690098 CAGCACATTGTTCTAGCATAAATGTC 59.310 38.462 8.86 6.15 38.94 3.06
3993 4665 2.056577 GCAAAGCTCAGCACATTGTTC 58.943 47.619 0.00 0.00 0.00 3.18
4092 4764 2.428530 CAGGTGGACATCAAGATCTCGA 59.571 50.000 0.00 0.00 0.00 4.04
4182 4854 1.357137 TGGGATTGTACTGCCTCACA 58.643 50.000 0.00 0.00 0.00 3.58
4183 4855 2.489938 TTGGGATTGTACTGCCTCAC 57.510 50.000 0.00 0.00 0.00 3.51
4223 4895 4.141135 TGGTAACCCTGATCACCAAAAAGA 60.141 41.667 0.00 0.00 38.10 2.52
4350 5022 6.713762 TCAGGTTCAAACTTGATGATGTTT 57.286 33.333 3.81 0.00 39.67 2.83
4681 5353 8.506437 CACTGTAGAGAATATGAAAACAAGCAA 58.494 33.333 0.00 0.00 0.00 3.91
4687 5359 8.988064 TCAGTCACTGTAGAGAATATGAAAAC 57.012 34.615 4.28 0.00 32.61 2.43
4729 5404 8.752766 AGCAACTGTGAAGAATATGAAATTTG 57.247 30.769 0.00 0.00 0.00 2.32
4772 5447 1.949525 GACCTGCAAATGTGTGACAGT 59.050 47.619 0.00 0.00 0.00 3.55
4819 5494 3.691342 CCGAGCGAGTTGGGGTCA 61.691 66.667 0.00 0.00 32.38 4.02
4896 5571 1.111277 AAAGAACAGGTTGCCCACAC 58.889 50.000 0.00 0.00 0.00 3.82
4897 5572 1.110442 CAAAGAACAGGTTGCCCACA 58.890 50.000 0.00 0.00 0.00 4.17
4945 5620 4.314440 GCTCCGTGCACAGACCCA 62.314 66.667 18.64 0.00 42.31 4.51
5114 5789 4.610333 ACAGGTTTGTTCTTCCTTCCTTT 58.390 39.130 0.00 0.00 32.28 3.11
5204 5879 1.060266 CAAAGATCAGACGCTGCGAAG 59.940 52.381 30.47 16.90 0.00 3.79
5288 6069 9.334693 CACAAGAGAAAACTTTGCAGATAATAC 57.665 33.333 0.00 0.00 0.00 1.89
5297 6078 4.110036 ACCACACAAGAGAAAACTTTGC 57.890 40.909 0.00 0.00 0.00 3.68
5307 6088 0.249868 TGAGCGGAACCACACAAGAG 60.250 55.000 0.00 0.00 0.00 2.85
5309 6090 0.518636 CATGAGCGGAACCACACAAG 59.481 55.000 0.00 0.00 0.00 3.16
5312 6093 0.238289 CAACATGAGCGGAACCACAC 59.762 55.000 0.00 0.00 0.00 3.82
5313 6094 0.107643 TCAACATGAGCGGAACCACA 59.892 50.000 0.00 0.00 0.00 4.17
5314 6095 1.234821 TTCAACATGAGCGGAACCAC 58.765 50.000 0.00 0.00 0.00 4.16
5321 6102 1.673760 CACGGTTTTCAACATGAGCG 58.326 50.000 0.00 0.00 38.77 5.03
5353 6134 1.399440 CTGCTTTGGTCCACATGATCG 59.601 52.381 0.00 0.00 0.00 3.69
5403 7411 2.289320 ACTGTGGAATCAGTGACTCTGC 60.289 50.000 1.04 0.00 45.40 4.26
5409 7417 8.862325 ATGTTTATTTACTGTGGAATCAGTGA 57.138 30.769 9.21 0.00 46.36 3.41
5435 7443 6.166984 AGAATACATCCACTGTGTCATAGG 57.833 41.667 7.08 0.00 38.92 2.57
5475 7483 8.768397 ACAGGTTGTGTCATAGGATCTTTTATA 58.232 33.333 0.00 0.00 31.90 0.98
5476 7484 7.633789 ACAGGTTGTGTCATAGGATCTTTTAT 58.366 34.615 0.00 0.00 31.90 1.40
5477 7485 7.016153 ACAGGTTGTGTCATAGGATCTTTTA 57.984 36.000 0.00 0.00 31.90 1.52
5478 7486 5.880901 ACAGGTTGTGTCATAGGATCTTTT 58.119 37.500 0.00 0.00 31.90 2.27
5479 7487 5.505181 ACAGGTTGTGTCATAGGATCTTT 57.495 39.130 0.00 0.00 31.90 2.52
5481 7489 5.273208 ACTACAGGTTGTGTCATAGGATCT 58.727 41.667 0.00 0.00 40.94 2.75
5483 7491 6.213600 AGAAACTACAGGTTGTGTCATAGGAT 59.786 38.462 6.89 0.00 40.94 3.24
5484 7492 5.542635 AGAAACTACAGGTTGTGTCATAGGA 59.457 40.000 6.89 0.00 40.94 2.94
5485 7493 5.794894 AGAAACTACAGGTTGTGTCATAGG 58.205 41.667 6.89 0.00 40.94 2.57
5486 7494 6.692486 AGAGAAACTACAGGTTGTGTCATAG 58.308 40.000 6.89 0.00 40.94 2.23
5487 7495 6.665992 AGAGAAACTACAGGTTGTGTCATA 57.334 37.500 6.89 0.00 40.94 2.15
5488 7496 5.552870 AGAGAAACTACAGGTTGTGTCAT 57.447 39.130 6.89 0.00 40.94 3.06
5489 7497 5.105106 TGAAGAGAAACTACAGGTTGTGTCA 60.105 40.000 6.89 0.00 40.94 3.58
5490 7498 5.357257 TGAAGAGAAACTACAGGTTGTGTC 58.643 41.667 0.00 0.00 40.94 3.67
5491 7499 5.104900 ACTGAAGAGAAACTACAGGTTGTGT 60.105 40.000 0.00 0.00 43.86 3.72
5498 7506 6.183360 GCTGCATAACTGAAGAGAAACTACAG 60.183 42.308 0.00 0.00 27.95 2.74
5533 7541 4.572985 TGTGCAAGGATCTTTTGAAGTG 57.427 40.909 12.65 0.00 0.00 3.16
5534 7542 5.535333 CAATGTGCAAGGATCTTTTGAAGT 58.465 37.500 12.65 0.00 0.00 3.01
5535 7543 4.387862 GCAATGTGCAAGGATCTTTTGAAG 59.612 41.667 12.65 0.00 44.26 3.02
5536 7544 4.309099 GCAATGTGCAAGGATCTTTTGAA 58.691 39.130 12.65 1.87 44.26 2.69
5537 7545 3.916761 GCAATGTGCAAGGATCTTTTGA 58.083 40.909 12.65 0.00 44.26 2.69
5553 7573 7.933396 TGATTAGGTCATTTAGATGTGCAATG 58.067 34.615 0.00 0.00 34.77 2.82
5554 7574 8.523915 TTGATTAGGTCATTTAGATGTGCAAT 57.476 30.769 0.00 0.00 36.54 3.56
5572 7637 9.927668 TTCCTTTTCCTTTTAATGCTTGATTAG 57.072 29.630 0.00 0.00 0.00 1.73
5601 7666 2.606272 GCGGAGATTCGTACGGATTTTT 59.394 45.455 16.52 2.06 0.00 1.94
5607 7672 0.027979 TTACGCGGAGATTCGTACGG 59.972 55.000 16.52 0.00 40.35 4.02
5609 7674 3.792956 TGATTTTACGCGGAGATTCGTAC 59.207 43.478 12.47 0.00 40.35 3.67
5610 7675 4.031418 TGATTTTACGCGGAGATTCGTA 57.969 40.909 12.47 0.00 39.79 3.43
5619 7686 2.490328 ATGCCATTGATTTTACGCGG 57.510 45.000 12.47 0.00 0.00 6.46
5647 7714 6.262944 CAGATTTGCCCTAAGTATTGCACATA 59.737 38.462 0.00 0.00 32.63 2.29
5664 7731 3.962423 GCTAAAGCAGATCCAGATTTGC 58.038 45.455 13.70 13.70 45.87 3.68
5719 7787 5.625311 CGACTTACCTTGAAGAAAATGTTGC 59.375 40.000 0.00 0.00 0.00 4.17
5731 7799 1.067364 TGTTGCGACGACTTACCTTGA 59.933 47.619 0.00 0.00 0.00 3.02
5735 7803 1.392510 GGAATGTTGCGACGACTTACC 59.607 52.381 0.00 0.00 0.00 2.85
5746 7814 2.352503 ACATGCTTTCGGAATGTTGC 57.647 45.000 0.00 2.99 41.20 4.17
5763 7831 2.174424 TGGGGATATGTTGCTGCATACA 59.826 45.455 16.07 16.07 34.59 2.29
5764 7832 2.862541 TGGGGATATGTTGCTGCATAC 58.137 47.619 1.84 5.62 34.59 2.39
5829 7897 5.110598 GGAACTGCTTTCTAGTAGCTTACC 58.889 45.833 16.65 12.02 37.60 2.85
5840 7908 3.003689 CGATTGTGTTGGAACTGCTTTCT 59.996 43.478 0.00 0.00 34.26 2.52
5863 7931 6.798482 TGCACCATCAACATTAATCTTCATC 58.202 36.000 0.00 0.00 0.00 2.92
5887 7955 6.172136 TCACACCCATTTTCACATTCAATT 57.828 33.333 0.00 0.00 0.00 2.32
5892 7960 2.899256 CCCTCACACCCATTTTCACATT 59.101 45.455 0.00 0.00 0.00 2.71
5893 7961 2.109834 TCCCTCACACCCATTTTCACAT 59.890 45.455 0.00 0.00 0.00 3.21
5894 7962 1.496857 TCCCTCACACCCATTTTCACA 59.503 47.619 0.00 0.00 0.00 3.58
5895 7963 2.162681 CTCCCTCACACCCATTTTCAC 58.837 52.381 0.00 0.00 0.00 3.18
5908 7976 1.007238 CCTTAGTCCAGGACTCCCTCA 59.993 57.143 26.42 5.02 42.40 3.86
5909 7977 1.689892 CCCTTAGTCCAGGACTCCCTC 60.690 61.905 26.42 0.00 42.40 4.30
5910 7978 0.340208 CCCTTAGTCCAGGACTCCCT 59.660 60.000 26.42 4.72 42.40 4.20
5911 7979 0.691413 CCCCTTAGTCCAGGACTCCC 60.691 65.000 26.42 0.00 42.40 4.30
5912 7980 0.042881 ACCCCTTAGTCCAGGACTCC 59.957 60.000 26.42 0.00 42.40 3.85
5913 7981 1.487300 GACCCCTTAGTCCAGGACTC 58.513 60.000 26.42 6.18 42.40 3.36
5914 7982 3.713867 GACCCCTTAGTCCAGGACT 57.286 57.895 25.92 25.92 45.54 3.85
5921 7989 2.433146 GCCCGAGGACCCCTTAGTC 61.433 68.421 0.00 0.00 31.76 2.59
5922 7990 2.365237 GCCCGAGGACCCCTTAGT 60.365 66.667 0.00 0.00 31.76 2.24
5923 7991 3.537874 CGCCCGAGGACCCCTTAG 61.538 72.222 0.00 0.00 31.76 2.18
5924 7992 4.387343 ACGCCCGAGGACCCCTTA 62.387 66.667 0.00 0.00 31.76 2.69
5936 8004 2.183555 CTAACAGACCGGACGCCC 59.816 66.667 9.46 0.00 0.00 6.13
5937 8005 2.508663 GCTAACAGACCGGACGCC 60.509 66.667 9.46 0.00 0.00 5.68
5938 8006 2.508663 GGCTAACAGACCGGACGC 60.509 66.667 9.46 0.00 0.00 5.19
5939 8007 0.806102 CATGGCTAACAGACCGGACG 60.806 60.000 9.46 0.69 0.00 4.79
5940 8008 0.462047 CCATGGCTAACAGACCGGAC 60.462 60.000 9.46 0.10 0.00 4.79
5941 8009 1.622607 CCCATGGCTAACAGACCGGA 61.623 60.000 9.46 0.00 0.00 5.14
5942 8010 1.153168 CCCATGGCTAACAGACCGG 60.153 63.158 6.09 0.00 0.00 5.28
5943 8011 1.819632 GCCCATGGCTAACAGACCG 60.820 63.158 6.09 0.00 46.69 4.79
5944 8012 4.242602 GCCCATGGCTAACAGACC 57.757 61.111 6.09 0.00 46.69 3.85
5954 8022 2.203252 CATCAGTCCGGCCCATGG 60.203 66.667 4.14 4.14 0.00 3.66
5955 8023 2.203252 CCATCAGTCCGGCCCATG 60.203 66.667 0.00 0.00 0.00 3.66
5956 8024 3.492353 CCCATCAGTCCGGCCCAT 61.492 66.667 0.00 0.00 0.00 4.00
5959 8027 4.864334 CAGCCCATCAGTCCGGCC 62.864 72.222 0.00 0.00 44.13 6.13
5960 8028 4.101448 ACAGCCCATCAGTCCGGC 62.101 66.667 0.00 0.00 43.35 6.13
5961 8029 2.124983 CACAGCCCATCAGTCCGG 60.125 66.667 0.00 0.00 0.00 5.14
5962 8030 0.742281 CTTCACAGCCCATCAGTCCG 60.742 60.000 0.00 0.00 0.00 4.79
5963 8031 0.615331 TCTTCACAGCCCATCAGTCC 59.385 55.000 0.00 0.00 0.00 3.85
5964 8032 2.706339 ATCTTCACAGCCCATCAGTC 57.294 50.000 0.00 0.00 0.00 3.51
5965 8033 2.159043 CGTATCTTCACAGCCCATCAGT 60.159 50.000 0.00 0.00 0.00 3.41
5966 8034 2.101415 TCGTATCTTCACAGCCCATCAG 59.899 50.000 0.00 0.00 0.00 2.90
5967 8035 2.107366 TCGTATCTTCACAGCCCATCA 58.893 47.619 0.00 0.00 0.00 3.07
5968 8036 2.890808 TCGTATCTTCACAGCCCATC 57.109 50.000 0.00 0.00 0.00 3.51
5969 8037 2.766263 TCTTCGTATCTTCACAGCCCAT 59.234 45.455 0.00 0.00 0.00 4.00
5970 8038 2.094182 GTCTTCGTATCTTCACAGCCCA 60.094 50.000 0.00 0.00 0.00 5.36
5971 8039 2.541556 GTCTTCGTATCTTCACAGCCC 58.458 52.381 0.00 0.00 0.00 5.19
5972 8040 2.541556 GGTCTTCGTATCTTCACAGCC 58.458 52.381 0.00 0.00 0.00 4.85
5973 8041 2.159421 TCGGTCTTCGTATCTTCACAGC 60.159 50.000 0.00 0.00 40.32 4.40
5974 8042 3.759527 TCGGTCTTCGTATCTTCACAG 57.240 47.619 0.00 0.00 40.32 3.66
5975 8043 3.754850 TCTTCGGTCTTCGTATCTTCACA 59.245 43.478 0.00 0.00 40.32 3.58
5976 8044 4.097012 GTCTTCGGTCTTCGTATCTTCAC 58.903 47.826 0.00 0.00 40.32 3.18
5977 8045 4.008330 AGTCTTCGGTCTTCGTATCTTCA 58.992 43.478 0.00 0.00 40.32 3.02
5978 8046 4.496175 GGAGTCTTCGGTCTTCGTATCTTC 60.496 50.000 0.00 0.00 40.32 2.87
5979 8047 3.377798 GGAGTCTTCGGTCTTCGTATCTT 59.622 47.826 0.00 0.00 40.32 2.40
5980 8048 2.944349 GGAGTCTTCGGTCTTCGTATCT 59.056 50.000 0.00 0.00 40.32 1.98
5981 8049 2.681848 TGGAGTCTTCGGTCTTCGTATC 59.318 50.000 0.00 0.00 40.32 2.24
5982 8050 2.422832 GTGGAGTCTTCGGTCTTCGTAT 59.577 50.000 0.00 0.00 40.32 3.06
5983 8051 1.808945 GTGGAGTCTTCGGTCTTCGTA 59.191 52.381 0.00 0.00 40.32 3.43
5984 8052 0.597072 GTGGAGTCTTCGGTCTTCGT 59.403 55.000 0.00 0.00 40.32 3.85
5985 8053 0.109226 GGTGGAGTCTTCGGTCTTCG 60.109 60.000 0.00 0.00 40.90 3.79
5986 8054 0.246910 GGGTGGAGTCTTCGGTCTTC 59.753 60.000 0.00 0.00 0.00 2.87
5987 8055 1.533469 CGGGTGGAGTCTTCGGTCTT 61.533 60.000 0.00 0.00 0.00 3.01
5988 8056 1.977544 CGGGTGGAGTCTTCGGTCT 60.978 63.158 0.00 0.00 0.00 3.85
5989 8057 2.273912 ACGGGTGGAGTCTTCGGTC 61.274 63.158 0.00 0.00 0.00 4.79
5990 8058 2.203596 ACGGGTGGAGTCTTCGGT 60.204 61.111 0.00 0.00 0.00 4.69
5991 8059 2.261671 CACGGGTGGAGTCTTCGG 59.738 66.667 0.00 0.00 0.00 4.30
5992 8060 1.080705 GACACGGGTGGAGTCTTCG 60.081 63.158 0.00 0.00 34.19 3.79
5993 8061 1.292541 GGACACGGGTGGAGTCTTC 59.707 63.158 0.00 0.00 32.98 2.87
5994 8062 2.571216 CGGACACGGGTGGAGTCTT 61.571 63.158 0.00 0.00 36.18 3.01
5995 8063 2.989824 CGGACACGGGTGGAGTCT 60.990 66.667 0.00 0.00 36.18 3.24
6009 8077 0.042731 AAAGGAGAGTCCCATCCGGA 59.957 55.000 6.61 6.61 40.73 5.14
6010 8078 0.179000 CAAAGGAGAGTCCCATCCGG 59.821 60.000 0.00 0.00 40.73 5.14
6011 8079 0.905357 ACAAAGGAGAGTCCCATCCG 59.095 55.000 1.17 0.00 40.73 4.18
6012 8080 1.630878 ACACAAAGGAGAGTCCCATCC 59.369 52.381 1.17 0.00 37.19 3.51
6013 8081 2.616510 CCACACAAAGGAGAGTCCCATC 60.617 54.545 1.17 0.00 37.19 3.51
6014 8082 1.352352 CCACACAAAGGAGAGTCCCAT 59.648 52.381 1.17 0.00 37.19 4.00
6015 8083 0.764890 CCACACAAAGGAGAGTCCCA 59.235 55.000 1.17 0.00 37.19 4.37
6016 8084 1.056660 TCCACACAAAGGAGAGTCCC 58.943 55.000 0.00 0.00 37.19 4.46
6017 8085 2.551071 CCTTCCACACAAAGGAGAGTCC 60.551 54.545 0.00 0.00 45.15 3.85
6018 8086 2.772287 CCTTCCACACAAAGGAGAGTC 58.228 52.381 0.00 0.00 45.15 3.36
6019 8087 1.202818 GCCTTCCACACAAAGGAGAGT 60.203 52.381 6.10 0.00 45.15 3.24
6020 8088 1.202806 TGCCTTCCACACAAAGGAGAG 60.203 52.381 6.10 0.00 45.15 3.20
6021 8089 0.843309 TGCCTTCCACACAAAGGAGA 59.157 50.000 6.10 0.00 45.15 3.71
6022 8090 1.610522 CTTGCCTTCCACACAAAGGAG 59.389 52.381 6.10 0.00 45.15 3.69
6023 8091 1.691196 CTTGCCTTCCACACAAAGGA 58.309 50.000 6.10 0.00 45.15 3.36
6024 8092 0.032540 GCTTGCCTTCCACACAAAGG 59.967 55.000 0.00 0.00 45.12 3.11
6025 8093 1.035139 AGCTTGCCTTCCACACAAAG 58.965 50.000 0.00 0.00 0.00 2.77
6026 8094 1.136695 CAAGCTTGCCTTCCACACAAA 59.863 47.619 14.65 0.00 0.00 2.83
6027 8095 0.746063 CAAGCTTGCCTTCCACACAA 59.254 50.000 14.65 0.00 0.00 3.33
6028 8096 1.108727 CCAAGCTTGCCTTCCACACA 61.109 55.000 21.43 0.00 0.00 3.72
6029 8097 1.662044 CCAAGCTTGCCTTCCACAC 59.338 57.895 21.43 0.00 0.00 3.82
6030 8098 2.202395 GCCAAGCTTGCCTTCCACA 61.202 57.895 21.43 0.00 0.00 4.17
6031 8099 2.653115 GCCAAGCTTGCCTTCCAC 59.347 61.111 21.43 0.12 0.00 4.02
6032 8100 2.769652 ATCGCCAAGCTTGCCTTCCA 62.770 55.000 21.43 1.33 0.00 3.53
6033 8101 1.997928 GATCGCCAAGCTTGCCTTCC 61.998 60.000 21.43 5.84 0.00 3.46
6034 8102 1.308069 TGATCGCCAAGCTTGCCTTC 61.308 55.000 21.43 13.91 0.00 3.46
6035 8103 0.895100 TTGATCGCCAAGCTTGCCTT 60.895 50.000 21.43 5.08 0.00 4.35
6036 8104 0.895100 TTTGATCGCCAAGCTTGCCT 60.895 50.000 21.43 4.53 35.94 4.75
6037 8105 0.733909 GTTTGATCGCCAAGCTTGCC 60.734 55.000 21.43 9.45 35.94 4.52
6038 8106 0.039256 TGTTTGATCGCCAAGCTTGC 60.039 50.000 21.43 14.85 36.98 4.01
6039 8107 2.095110 TCATGTTTGATCGCCAAGCTTG 60.095 45.455 19.93 19.93 40.21 4.01
6040 8108 2.161855 TCATGTTTGATCGCCAAGCTT 58.838 42.857 0.00 0.00 36.98 3.74
6041 8109 1.825090 TCATGTTTGATCGCCAAGCT 58.175 45.000 0.00 0.00 36.98 3.74
6042 8110 2.162208 TCTTCATGTTTGATCGCCAAGC 59.838 45.455 0.00 0.00 35.94 4.01
6043 8111 4.627611 ATCTTCATGTTTGATCGCCAAG 57.372 40.909 0.00 0.00 35.94 3.61
6044 8112 4.142403 GGAATCTTCATGTTTGATCGCCAA 60.142 41.667 0.00 0.00 0.00 4.52
6045 8113 3.378112 GGAATCTTCATGTTTGATCGCCA 59.622 43.478 0.00 0.00 0.00 5.69
6046 8114 3.629398 AGGAATCTTCATGTTTGATCGCC 59.371 43.478 0.00 1.93 0.00 5.54
6047 8115 4.889832 AGGAATCTTCATGTTTGATCGC 57.110 40.909 0.00 0.00 0.00 4.58
6048 8116 7.065563 AGAGAAAGGAATCTTCATGTTTGATCG 59.934 37.037 0.00 0.00 31.82 3.69
6049 8117 8.182881 CAGAGAAAGGAATCTTCATGTTTGATC 58.817 37.037 0.00 0.00 31.82 2.92
6050 8118 7.668886 ACAGAGAAAGGAATCTTCATGTTTGAT 59.331 33.333 0.00 0.00 31.82 2.57
6051 8119 7.000472 ACAGAGAAAGGAATCTTCATGTTTGA 59.000 34.615 0.00 0.00 31.82 2.69
6052 8120 7.211966 ACAGAGAAAGGAATCTTCATGTTTG 57.788 36.000 0.00 0.00 31.82 2.93
6053 8121 8.787852 GTTACAGAGAAAGGAATCTTCATGTTT 58.212 33.333 0.00 0.00 31.82 2.83
6054 8122 7.391833 GGTTACAGAGAAAGGAATCTTCATGTT 59.608 37.037 0.00 0.00 31.82 2.71
6055 8123 6.881602 GGTTACAGAGAAAGGAATCTTCATGT 59.118 38.462 0.00 0.00 31.82 3.21
6056 8124 6.036517 CGGTTACAGAGAAAGGAATCTTCATG 59.963 42.308 0.00 0.00 31.82 3.07
6057 8125 6.070767 TCGGTTACAGAGAAAGGAATCTTCAT 60.071 38.462 0.00 0.00 31.82 2.57
6058 8126 5.245301 TCGGTTACAGAGAAAGGAATCTTCA 59.755 40.000 0.00 0.00 31.82 3.02
6059 8127 5.577554 GTCGGTTACAGAGAAAGGAATCTTC 59.422 44.000 0.00 0.00 31.82 2.87
6060 8128 5.480205 GTCGGTTACAGAGAAAGGAATCTT 58.520 41.667 0.00 0.00 34.07 2.40
6061 8129 4.081586 GGTCGGTTACAGAGAAAGGAATCT 60.082 45.833 0.00 0.00 0.00 2.40
6062 8130 4.081586 AGGTCGGTTACAGAGAAAGGAATC 60.082 45.833 0.00 0.00 0.00 2.52
6063 8131 3.838903 AGGTCGGTTACAGAGAAAGGAAT 59.161 43.478 0.00 0.00 0.00 3.01
6064 8132 3.236896 AGGTCGGTTACAGAGAAAGGAA 58.763 45.455 0.00 0.00 0.00 3.36
6065 8133 2.885616 AGGTCGGTTACAGAGAAAGGA 58.114 47.619 0.00 0.00 0.00 3.36
6066 8134 3.244112 ACAAGGTCGGTTACAGAGAAAGG 60.244 47.826 0.00 0.00 0.00 3.11
6067 8135 3.741344 CACAAGGTCGGTTACAGAGAAAG 59.259 47.826 0.00 0.00 0.00 2.62
6068 8136 3.133362 ACACAAGGTCGGTTACAGAGAAA 59.867 43.478 0.00 0.00 0.00 2.52
6069 8137 2.696707 ACACAAGGTCGGTTACAGAGAA 59.303 45.455 0.00 0.00 0.00 2.87
6070 8138 2.313317 ACACAAGGTCGGTTACAGAGA 58.687 47.619 0.00 0.00 0.00 3.10
6071 8139 2.814280 ACACAAGGTCGGTTACAGAG 57.186 50.000 0.00 0.00 0.00 3.35
6072 8140 3.243839 GGTTACACAAGGTCGGTTACAGA 60.244 47.826 0.00 0.00 0.00 3.41
6073 8141 3.062042 GGTTACACAAGGTCGGTTACAG 58.938 50.000 0.00 0.00 0.00 2.74
6074 8142 2.224257 GGGTTACACAAGGTCGGTTACA 60.224 50.000 0.00 0.00 0.00 2.41
6075 8143 2.037641 AGGGTTACACAAGGTCGGTTAC 59.962 50.000 0.00 0.00 0.00 2.50
6076 8144 2.328319 AGGGTTACACAAGGTCGGTTA 58.672 47.619 0.00 0.00 0.00 2.85
6077 8145 1.134228 AGGGTTACACAAGGTCGGTT 58.866 50.000 0.00 0.00 0.00 4.44
6078 8146 1.897802 CTAGGGTTACACAAGGTCGGT 59.102 52.381 0.00 0.00 0.00 4.69
6079 8147 2.173519 TCTAGGGTTACACAAGGTCGG 58.826 52.381 0.00 0.00 0.00 4.79
6080 8148 3.181478 GGATCTAGGGTTACACAAGGTCG 60.181 52.174 0.00 0.00 0.00 4.79
6081 8149 3.134262 GGGATCTAGGGTTACACAAGGTC 59.866 52.174 0.00 0.00 0.00 3.85
6082 8150 3.113043 GGGATCTAGGGTTACACAAGGT 58.887 50.000 0.00 0.00 0.00 3.50
6083 8151 3.385115 AGGGATCTAGGGTTACACAAGG 58.615 50.000 0.00 0.00 0.00 3.61
6084 8152 3.388350 GGAGGGATCTAGGGTTACACAAG 59.612 52.174 0.00 0.00 0.00 3.16
6085 8153 3.381335 GGAGGGATCTAGGGTTACACAA 58.619 50.000 0.00 0.00 0.00 3.33
6086 8154 2.688817 CGGAGGGATCTAGGGTTACACA 60.689 54.545 0.00 0.00 0.00 3.72
6087 8155 1.962100 CGGAGGGATCTAGGGTTACAC 59.038 57.143 0.00 0.00 0.00 2.90
6088 8156 2.376695 CGGAGGGATCTAGGGTTACA 57.623 55.000 0.00 0.00 0.00 2.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.