Multiple sequence alignment - TraesCS2D01G548000

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G548000 chr2D 100.000 4734 0 0 1 4734 624099528 624094795 0.000000e+00 8743.0
1 TraesCS2D01G548000 chr2D 94.118 85 5 0 2654 2738 172409750 172409666 3.840000e-26 130.0
2 TraesCS2D01G548000 chr2B 89.936 2017 147 28 2737 4734 765922266 765920287 0.000000e+00 2549.0
3 TraesCS2D01G548000 chr2B 94.481 761 33 4 890 1645 765923937 765923181 0.000000e+00 1164.0
4 TraesCS2D01G548000 chr2B 89.816 599 50 5 2059 2655 765922854 765922265 0.000000e+00 758.0
5 TraesCS2D01G548000 chr2B 91.579 95 4 3 2654 2745 643266175 643266082 1.380000e-25 128.0
6 TraesCS2D01G548000 chr2A 93.897 1655 88 12 3085 4734 755365810 755364164 0.000000e+00 2484.0
7 TraesCS2D01G548000 chr2A 93.188 734 37 8 913 1645 755367835 755367114 0.000000e+00 1066.0
8 TraesCS2D01G548000 chr2A 86.632 763 77 13 1 740 338516331 338517091 0.000000e+00 821.0
9 TraesCS2D01G548000 chr2A 85.139 794 84 17 3474 4257 755045619 755046388 0.000000e+00 782.0
10 TraesCS2D01G548000 chr2A 87.309 654 57 9 4 634 712067600 712066950 0.000000e+00 725.0
11 TraesCS2D01G548000 chr2A 88.127 598 60 8 2059 2655 755366809 755366222 0.000000e+00 701.0
12 TraesCS2D01G548000 chr2A 84.416 308 46 2 4250 4556 755047823 755048129 7.700000e-78 302.0
13 TraesCS2D01G548000 chr2A 91.489 94 8 0 2645 2738 177658316 177658409 3.840000e-26 130.0
14 TraesCS2D01G548000 chr7D 87.828 2021 172 41 2737 4734 534336387 534334418 0.000000e+00 2302.0
15 TraesCS2D01G548000 chr7D 91.895 765 38 16 890 1645 534338027 534337278 0.000000e+00 1048.0
16 TraesCS2D01G548000 chr7D 90.513 643 60 1 1 643 163002424 163001783 0.000000e+00 848.0
17 TraesCS2D01G548000 chr7D 86.581 626 47 18 2037 2655 534336981 534336386 0.000000e+00 656.0
18 TraesCS2D01G548000 chr5B 88.931 795 47 17 1 760 706762626 706763414 0.000000e+00 942.0
19 TraesCS2D01G548000 chr5B 87.582 153 18 1 3153 3304 660923072 660923224 4.870000e-40 176.0
20 TraesCS2D01G548000 chr5B 86.928 153 19 1 3153 3304 660877123 660877275 2.270000e-38 171.0
21 TraesCS2D01G548000 chr5B 87.912 91 6 5 2654 2742 582392059 582391972 8.380000e-18 102.0
22 TraesCS2D01G548000 chr5D 88.962 761 61 6 1 740 188387213 188387971 0.000000e+00 918.0
23 TraesCS2D01G548000 chr5D 88.387 775 69 8 1 757 486862984 486863755 0.000000e+00 913.0
24 TraesCS2D01G548000 chr5D 85.660 795 80 15 3 767 117767172 117766382 0.000000e+00 806.0
25 TraesCS2D01G548000 chr5D 86.813 91 5 6 2654 2742 475152523 475152438 1.400000e-15 95.3
26 TraesCS2D01G548000 chr5D 86.047 86 8 4 2654 2738 5804146 5804064 6.530000e-14 89.8
27 TraesCS2D01G548000 chr5D 82.353 85 15 0 2654 2738 421531409 421531325 1.830000e-09 75.0
28 TraesCS2D01G548000 chr6A 87.821 780 74 15 1 767 459842987 459842216 0.000000e+00 894.0
29 TraesCS2D01G548000 chr6A 91.860 86 7 0 2653 2738 25634581 25634496 2.310000e-23 121.0
30 TraesCS2D01G548000 chr6A 95.833 48 2 0 2653 2700 70419605 70419652 1.410000e-10 78.7
31 TraesCS2D01G548000 chr6A 97.297 37 1 0 2702 2738 121886382 121886346 3.950000e-06 63.9
32 TraesCS2D01G548000 chr3B 87.310 788 65 13 1 757 3136063 3135280 0.000000e+00 869.0
33 TraesCS2D01G548000 chr5A 89.109 606 64 2 28 632 128406093 128405489 0.000000e+00 752.0
34 TraesCS2D01G548000 chr5A 86.090 647 68 11 1 627 623204973 623205617 0.000000e+00 676.0
35 TraesCS2D01G548000 chr5A 88.235 85 6 4 2654 2736 594323322 594323240 1.080000e-16 99.0
36 TraesCS2D01G548000 chr1D 86.989 661 55 16 1 633 29805030 29805687 0.000000e+00 715.0
37 TraesCS2D01G548000 chr1D 85.535 159 22 1 3147 3304 437804163 437804321 1.050000e-36 165.0
38 TraesCS2D01G548000 chr1D 91.071 56 4 1 2654 2708 316619666 316619721 1.830000e-09 75.0
39 TraesCS2D01G548000 chr1D 93.617 47 3 0 2652 2698 49604546 49604592 2.360000e-08 71.3
40 TraesCS2D01G548000 chr1D 95.238 42 2 0 2698 2739 303325606 303325647 3.060000e-07 67.6
41 TraesCS2D01G548000 chr1D 92.500 40 3 0 2654 2693 444369284 444369323 1.840000e-04 58.4
42 TraesCS2D01G548000 chr7B 85.284 564 69 10 1 558 586758306 586757751 1.910000e-158 569.0
43 TraesCS2D01G548000 chr4B 86.588 425 46 6 2065 2481 378001367 378001788 4.320000e-125 459.0
44 TraesCS2D01G548000 chr4B 86.118 425 48 6 2065 2481 14570294 14569873 9.340000e-122 448.0
45 TraesCS2D01G548000 chr4B 87.843 255 27 3 3045 3296 378002157 378002410 3.580000e-76 296.0
46 TraesCS2D01G548000 chr4B 86.873 259 32 2 3050 3307 14569497 14569240 5.990000e-74 289.0
47 TraesCS2D01G548000 chr4B 92.308 39 3 0 2675 2713 419994174 419994136 6.620000e-04 56.5
48 TraesCS2D01G548000 chrUn 86.538 156 20 1 3153 3307 256117883 256117728 2.270000e-38 171.0
49 TraesCS2D01G548000 chrUn 86.928 153 19 1 3153 3304 342150561 342150713 2.270000e-38 171.0
50 TraesCS2D01G548000 chrUn 86.928 153 19 1 3153 3304 342153051 342153203 2.270000e-38 171.0
51 TraesCS2D01G548000 chr4D 90.698 86 7 1 2659 2744 192735988 192735904 3.870000e-21 113.0
52 TraesCS2D01G548000 chr4D 92.958 71 5 0 2669 2739 56719438 56719508 2.330000e-18 104.0
53 TraesCS2D01G548000 chr4D 87.179 78 6 4 2663 2738 127555322 127555247 8.440000e-13 86.1
54 TraesCS2D01G548000 chr4D 92.857 42 3 0 2654 2695 455659461 455659420 1.420000e-05 62.1
55 TraesCS2D01G548000 chr4A 94.366 71 4 0 2669 2739 540436121 540436051 5.010000e-20 110.0
56 TraesCS2D01G548000 chr4A 84.211 114 11 6 2652 2760 4626115 4626004 2.330000e-18 104.0
57 TraesCS2D01G548000 chr1B 86.905 84 11 0 2655 2738 143448622 143448705 1.400000e-15 95.3
58 TraesCS2D01G548000 chr3D 82.353 85 15 0 2654 2738 572754610 572754526 1.830000e-09 75.0
59 TraesCS2D01G548000 chr1A 95.238 42 2 0 2698 2739 380957971 380958012 3.060000e-07 67.6
60 TraesCS2D01G548000 chr1A 94.118 34 2 0 2706 2739 442555464 442555497 9.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G548000 chr2D 624094795 624099528 4733 True 8743.000000 8743 100.000000 1 4734 1 chr2D.!!$R2 4733
1 TraesCS2D01G548000 chr2B 765920287 765923937 3650 True 1490.333333 2549 91.411000 890 4734 3 chr2B.!!$R2 3844
2 TraesCS2D01G548000 chr2A 755364164 755367835 3671 True 1417.000000 2484 91.737333 913 4734 3 chr2A.!!$R2 3821
3 TraesCS2D01G548000 chr2A 338516331 338517091 760 False 821.000000 821 86.632000 1 740 1 chr2A.!!$F2 739
4 TraesCS2D01G548000 chr2A 712066950 712067600 650 True 725.000000 725 87.309000 4 634 1 chr2A.!!$R1 630
5 TraesCS2D01G548000 chr2A 755045619 755048129 2510 False 542.000000 782 84.777500 3474 4556 2 chr2A.!!$F3 1082
6 TraesCS2D01G548000 chr7D 534334418 534338027 3609 True 1335.333333 2302 88.768000 890 4734 3 chr7D.!!$R2 3844
7 TraesCS2D01G548000 chr7D 163001783 163002424 641 True 848.000000 848 90.513000 1 643 1 chr7D.!!$R1 642
8 TraesCS2D01G548000 chr5B 706762626 706763414 788 False 942.000000 942 88.931000 1 760 1 chr5B.!!$F3 759
9 TraesCS2D01G548000 chr5D 188387213 188387971 758 False 918.000000 918 88.962000 1 740 1 chr5D.!!$F1 739
10 TraesCS2D01G548000 chr5D 486862984 486863755 771 False 913.000000 913 88.387000 1 757 1 chr5D.!!$F2 756
11 TraesCS2D01G548000 chr5D 117766382 117767172 790 True 806.000000 806 85.660000 3 767 1 chr5D.!!$R2 764
12 TraesCS2D01G548000 chr6A 459842216 459842987 771 True 894.000000 894 87.821000 1 767 1 chr6A.!!$R3 766
13 TraesCS2D01G548000 chr3B 3135280 3136063 783 True 869.000000 869 87.310000 1 757 1 chr3B.!!$R1 756
14 TraesCS2D01G548000 chr5A 128405489 128406093 604 True 752.000000 752 89.109000 28 632 1 chr5A.!!$R1 604
15 TraesCS2D01G548000 chr5A 623204973 623205617 644 False 676.000000 676 86.090000 1 627 1 chr5A.!!$F1 626
16 TraesCS2D01G548000 chr1D 29805030 29805687 657 False 715.000000 715 86.989000 1 633 1 chr1D.!!$F1 632
17 TraesCS2D01G548000 chr7B 586757751 586758306 555 True 569.000000 569 85.284000 1 558 1 chr7B.!!$R1 557
18 TraesCS2D01G548000 chr4B 378001367 378002410 1043 False 377.500000 459 87.215500 2065 3296 2 chr4B.!!$F1 1231
19 TraesCS2D01G548000 chr4B 14569240 14570294 1054 True 368.500000 448 86.495500 2065 3307 2 chr4B.!!$R2 1242

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
772 879 0.244721 GTTGTTGGAGATGCCCAAGC 59.755 55.0 0.00 0.0 45.95 4.01 F
1650 1787 0.108281 GTAACTCGGCTGGGGAACTC 60.108 60.0 0.00 0.0 0.00 3.01 F
1845 2039 0.036388 TCTGCAATCACCGGAGAACC 60.036 55.0 9.46 0.0 0.00 3.62 F
2605 2887 0.112995 TCTTGAGCCTGGGTTGCATT 59.887 50.0 0.00 0.0 0.00 3.56 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1826 2020 0.036388 GGTTCTCCGGTGATTGCAGA 60.036 55.0 7.11 0.0 0.00 4.26 R
3304 3694 0.034337 CAGCTGGGTGCAAGCAAAAT 59.966 50.0 5.57 0.0 45.94 1.82 R
3679 4069 0.036952 CTTCAGGCTTCCGCTTCTCA 60.037 55.0 0.00 0.0 36.09 3.27 R
4080 4500 0.898320 TTGAGCTCCTCCTGTACTGC 59.102 55.0 12.15 0.0 0.00 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
141 142 2.360350 CCACAATGCTCAGGCGGT 60.360 61.111 0.00 0.00 42.25 5.68
158 159 2.935238 GCGGTGGCTAGAAAAGATGTGA 60.935 50.000 0.00 0.00 35.83 3.58
183 184 3.389002 AGAGCTTTTGGGATTTTGCAAGT 59.611 39.130 0.00 0.00 0.00 3.16
206 207 3.258872 CCAATTTGCCATTGTGAGAGGAA 59.741 43.478 5.30 0.00 0.00 3.36
241 242 5.271598 TGGGATCAAAAGATGCTTTGGTAT 58.728 37.500 0.00 0.00 37.00 2.73
281 300 1.091771 CGAGAATGAGCGTGGCCAAT 61.092 55.000 7.24 0.00 0.00 3.16
666 764 2.782615 GGTTCGCACGCGCTAAAT 59.217 55.556 5.73 0.00 39.59 1.40
767 874 2.480555 CGCGTTGTTGGAGATGCC 59.519 61.111 0.00 0.00 37.10 4.40
768 875 2.877691 GCGTTGTTGGAGATGCCC 59.122 61.111 0.00 0.00 34.97 5.36
769 876 1.971167 GCGTTGTTGGAGATGCCCA 60.971 57.895 0.00 0.00 34.97 5.36
770 877 1.523154 GCGTTGTTGGAGATGCCCAA 61.523 55.000 0.00 0.00 43.42 4.12
771 878 0.523072 CGTTGTTGGAGATGCCCAAG 59.477 55.000 0.00 0.00 45.95 3.61
772 879 0.244721 GTTGTTGGAGATGCCCAAGC 59.755 55.000 0.00 0.00 45.95 4.01
773 880 0.899717 TTGTTGGAGATGCCCAAGCC 60.900 55.000 0.00 0.00 45.95 4.35
774 881 2.045045 TTGGAGATGCCCAAGCCG 60.045 61.111 0.00 0.00 40.99 5.52
775 882 2.905996 TTGGAGATGCCCAAGCCGT 61.906 57.895 0.00 0.00 40.99 5.68
776 883 2.514824 GGAGATGCCCAAGCCGTC 60.515 66.667 0.00 0.00 38.69 4.79
777 884 2.586792 GAGATGCCCAAGCCGTCT 59.413 61.111 0.00 0.00 38.69 4.18
778 885 1.522580 GAGATGCCCAAGCCGTCTC 60.523 63.158 0.00 0.00 40.39 3.36
779 886 2.514824 GATGCCCAAGCCGTCTCC 60.515 66.667 0.00 0.00 38.69 3.71
780 887 3.329542 GATGCCCAAGCCGTCTCCA 62.330 63.158 0.00 0.00 38.69 3.86
781 888 2.819984 GATGCCCAAGCCGTCTCCAA 62.820 60.000 0.00 0.00 38.69 3.53
782 889 3.056328 GCCCAAGCCGTCTCCAAC 61.056 66.667 0.00 0.00 0.00 3.77
783 890 2.429930 CCCAAGCCGTCTCCAACA 59.570 61.111 0.00 0.00 0.00 3.33
784 891 1.002134 CCCAAGCCGTCTCCAACAT 60.002 57.895 0.00 0.00 0.00 2.71
785 892 0.609131 CCCAAGCCGTCTCCAACATT 60.609 55.000 0.00 0.00 0.00 2.71
786 893 0.523072 CCAAGCCGTCTCCAACATTG 59.477 55.000 0.00 0.00 0.00 2.82
787 894 1.238439 CAAGCCGTCTCCAACATTGT 58.762 50.000 0.00 0.00 0.00 2.71
788 895 1.608590 CAAGCCGTCTCCAACATTGTT 59.391 47.619 0.00 0.00 0.00 2.83
789 896 1.981256 AGCCGTCTCCAACATTGTTT 58.019 45.000 0.00 0.00 0.00 2.83
790 897 1.880027 AGCCGTCTCCAACATTGTTTC 59.120 47.619 0.00 0.00 0.00 2.78
791 898 1.606668 GCCGTCTCCAACATTGTTTCA 59.393 47.619 0.00 0.00 0.00 2.69
792 899 2.604614 GCCGTCTCCAACATTGTTTCAC 60.605 50.000 0.00 0.00 0.00 3.18
793 900 2.616376 CCGTCTCCAACATTGTTTCACA 59.384 45.455 0.00 0.00 0.00 3.58
794 901 3.548014 CCGTCTCCAACATTGTTTCACAC 60.548 47.826 0.00 0.00 0.00 3.82
795 902 3.064682 CGTCTCCAACATTGTTTCACACA 59.935 43.478 0.00 0.00 0.00 3.72
808 915 6.631971 TGTTTCACACAAATGCTCATTAGA 57.368 33.333 0.00 0.00 29.87 2.10
809 916 6.671190 TGTTTCACACAAATGCTCATTAGAG 58.329 36.000 0.00 0.00 37.42 2.43
810 917 6.262944 TGTTTCACACAAATGCTCATTAGAGT 59.737 34.615 0.00 0.00 36.98 3.24
811 918 7.443879 TGTTTCACACAAATGCTCATTAGAGTA 59.556 33.333 0.00 0.00 36.98 2.59
813 920 9.665719 TTTCACACAAATGCTCATTAGAGTATA 57.334 29.630 0.00 0.00 44.98 1.47
814 921 9.665719 TTCACACAAATGCTCATTAGAGTATAA 57.334 29.630 0.00 0.00 44.98 0.98
815 922 9.098355 TCACACAAATGCTCATTAGAGTATAAC 57.902 33.333 0.00 0.00 44.98 1.89
816 923 8.338259 CACACAAATGCTCATTAGAGTATAACC 58.662 37.037 0.00 0.00 44.98 2.85
817 924 8.267894 ACACAAATGCTCATTAGAGTATAACCT 58.732 33.333 0.00 0.00 44.98 3.50
818 925 9.113838 CACAAATGCTCATTAGAGTATAACCTT 57.886 33.333 0.00 0.00 44.98 3.50
843 950 9.715123 TTATAGATGTTCAAAACAACATATGCG 57.285 29.630 1.58 0.00 45.23 4.73
844 951 6.252967 AGATGTTCAAAACAACATATGCGA 57.747 33.333 1.58 0.00 45.23 5.10
845 952 6.317088 AGATGTTCAAAACAACATATGCGAG 58.683 36.000 1.58 0.00 45.23 5.03
846 953 5.681337 TGTTCAAAACAACATATGCGAGA 57.319 34.783 1.58 0.00 38.72 4.04
847 954 6.066054 TGTTCAAAACAACATATGCGAGAA 57.934 33.333 1.58 0.00 38.72 2.87
848 955 6.142139 TGTTCAAAACAACATATGCGAGAAG 58.858 36.000 1.58 0.00 38.72 2.85
849 956 5.940192 TCAAAACAACATATGCGAGAAGT 57.060 34.783 1.58 0.00 0.00 3.01
850 957 7.041712 TGTTCAAAACAACATATGCGAGAAGTA 60.042 33.333 1.58 0.00 38.72 2.24
851 958 7.609760 TCAAAACAACATATGCGAGAAGTAT 57.390 32.000 1.58 0.00 0.00 2.12
852 959 8.039603 TCAAAACAACATATGCGAGAAGTATT 57.960 30.769 1.58 0.00 0.00 1.89
872 979 3.887621 TCAAATACTGGAGGGAGAACG 57.112 47.619 0.00 0.00 0.00 3.95
873 980 2.500098 TCAAATACTGGAGGGAGAACGG 59.500 50.000 0.00 0.00 0.00 4.44
874 981 2.236395 CAAATACTGGAGGGAGAACGGT 59.764 50.000 0.00 0.00 0.00 4.83
875 982 3.393426 AATACTGGAGGGAGAACGGTA 57.607 47.619 0.00 0.00 0.00 4.02
876 983 3.614568 ATACTGGAGGGAGAACGGTAT 57.385 47.619 0.00 0.00 33.16 2.73
877 984 2.249309 ACTGGAGGGAGAACGGTATT 57.751 50.000 0.00 0.00 0.00 1.89
878 985 2.547990 ACTGGAGGGAGAACGGTATTT 58.452 47.619 0.00 0.00 0.00 1.40
879 986 2.910977 ACTGGAGGGAGAACGGTATTTT 59.089 45.455 0.00 0.00 0.00 1.82
880 987 3.055312 ACTGGAGGGAGAACGGTATTTTC 60.055 47.826 0.00 0.00 0.00 2.29
881 988 3.178865 TGGAGGGAGAACGGTATTTTCT 58.821 45.455 0.00 0.00 35.96 2.52
882 989 3.197116 TGGAGGGAGAACGGTATTTTCTC 59.803 47.826 4.56 4.56 45.68 2.87
883 990 3.451540 GGAGGGAGAACGGTATTTTCTCT 59.548 47.826 11.22 0.00 45.68 3.10
884 991 4.434520 GAGGGAGAACGGTATTTTCTCTG 58.565 47.826 11.22 0.00 45.68 3.35
885 992 4.094476 AGGGAGAACGGTATTTTCTCTGA 58.906 43.478 11.22 0.00 45.68 3.27
886 993 4.160626 AGGGAGAACGGTATTTTCTCTGAG 59.839 45.833 11.22 0.00 45.68 3.35
887 994 3.866327 GGAGAACGGTATTTTCTCTGAGC 59.134 47.826 11.22 0.00 45.68 4.26
888 995 4.495422 GAGAACGGTATTTTCTCTGAGCA 58.505 43.478 0.00 0.00 43.86 4.26
903 1010 4.206375 TCTGAGCAATTTGTTTGTGGAGA 58.794 39.130 0.00 0.00 37.65 3.71
916 1026 5.995282 TGTTTGTGGAGATTTCACGAATACT 59.005 36.000 0.00 0.00 39.71 2.12
922 1032 7.033791 GTGGAGATTTCACGAATACTGAACTA 58.966 38.462 0.00 0.00 0.00 2.24
992 1105 4.523282 GGGCATCCCTCTCCCCCT 62.523 72.222 0.00 0.00 41.34 4.79
1119 1256 2.043450 CTCCTCAGGCCGTCCTCT 60.043 66.667 0.00 0.00 41.93 3.69
1635 1772 2.667724 CGTCTTCGTCCTCACAGGTAAC 60.668 54.545 0.00 0.00 36.53 2.50
1647 1784 3.395630 GGTAACTCGGCTGGGGAA 58.604 61.111 0.00 0.00 0.00 3.97
1648 1785 1.078637 GGTAACTCGGCTGGGGAAC 60.079 63.158 0.00 0.00 0.00 3.62
1650 1787 0.108281 GTAACTCGGCTGGGGAACTC 60.108 60.000 0.00 0.00 0.00 3.01
1651 1788 1.262640 TAACTCGGCTGGGGAACTCC 61.263 60.000 0.00 0.00 0.00 3.85
1655 1792 3.090532 GGCTGGGGAACTCCGGAT 61.091 66.667 3.57 0.00 35.18 4.18
1656 1793 2.506472 GCTGGGGAACTCCGGATC 59.494 66.667 3.57 0.00 35.18 3.36
1658 1795 1.627297 GCTGGGGAACTCCGGATCTT 61.627 60.000 3.57 0.00 35.18 2.40
1659 1796 0.179000 CTGGGGAACTCCGGATCTTG 59.821 60.000 3.57 0.00 35.18 3.02
1660 1797 0.546747 TGGGGAACTCCGGATCTTGT 60.547 55.000 3.57 0.00 36.71 3.16
1662 1799 1.138464 GGGGAACTCCGGATCTTGTAC 59.862 57.143 3.57 0.00 36.71 2.90
1665 1818 3.703052 GGGAACTCCGGATCTTGTACTTA 59.297 47.826 3.57 0.00 36.71 2.24
1677 1830 8.700644 CGGATCTTGTACTTATAATGCACTAAC 58.299 37.037 0.00 0.00 0.00 2.34
1680 1833 7.277396 TCTTGTACTTATAATGCACTAACCCC 58.723 38.462 0.00 0.00 0.00 4.95
1681 1834 6.563037 TGTACTTATAATGCACTAACCCCA 57.437 37.500 0.00 0.00 0.00 4.96
1682 1835 6.350906 TGTACTTATAATGCACTAACCCCAC 58.649 40.000 0.00 0.00 0.00 4.61
1683 1836 5.444744 ACTTATAATGCACTAACCCCACA 57.555 39.130 0.00 0.00 0.00 4.17
1685 1838 6.249951 ACTTATAATGCACTAACCCCACAAA 58.750 36.000 0.00 0.00 0.00 2.83
1686 1839 6.895204 ACTTATAATGCACTAACCCCACAAAT 59.105 34.615 0.00 0.00 0.00 2.32
1688 1841 9.077885 CTTATAATGCACTAACCCCACAAATAT 57.922 33.333 0.00 0.00 0.00 1.28
1691 1844 6.959639 ATGCACTAACCCCACAAATATAAG 57.040 37.500 0.00 0.00 0.00 1.73
1692 1845 4.642885 TGCACTAACCCCACAAATATAAGC 59.357 41.667 0.00 0.00 0.00 3.09
1694 1847 5.301805 GCACTAACCCCACAAATATAAGCAT 59.698 40.000 0.00 0.00 0.00 3.79
1695 1848 6.183360 GCACTAACCCCACAAATATAAGCATT 60.183 38.462 0.00 0.00 0.00 3.56
1697 1850 4.670896 ACCCCACAAATATAAGCATTGC 57.329 40.909 0.00 0.00 0.00 3.56
1698 1851 4.289245 ACCCCACAAATATAAGCATTGCT 58.711 39.130 5.03 5.03 42.56 3.91
1763 1957 8.780249 GGCTTAACTTCAAATGTCACTAGTTAA 58.220 33.333 0.00 0.00 36.36 2.01
1791 1985 5.048504 ACTTTTACTGTGGATCATGCAAGTG 60.049 40.000 0.00 0.00 0.00 3.16
1795 1989 3.244526 ACTGTGGATCATGCAAGTGTGTA 60.245 43.478 0.00 0.00 0.00 2.90
1796 1990 3.943381 CTGTGGATCATGCAAGTGTGTAT 59.057 43.478 0.00 0.00 0.00 2.29
1797 1991 5.096443 TGTGGATCATGCAAGTGTGTATA 57.904 39.130 0.00 0.00 0.00 1.47
1798 1992 4.875536 TGTGGATCATGCAAGTGTGTATAC 59.124 41.667 0.00 0.00 0.00 1.47
1799 1993 4.875536 GTGGATCATGCAAGTGTGTATACA 59.124 41.667 0.08 0.08 0.00 2.29
1800 1994 5.528690 GTGGATCATGCAAGTGTGTATACAT 59.471 40.000 9.18 0.00 39.39 2.29
1801 1995 6.705825 GTGGATCATGCAAGTGTGTATACATA 59.294 38.462 9.18 3.08 39.39 2.29
1802 1996 7.388776 GTGGATCATGCAAGTGTGTATACATAT 59.611 37.037 9.18 0.00 39.39 1.78
1803 1997 7.938490 TGGATCATGCAAGTGTGTATACATATT 59.062 33.333 9.18 0.00 39.39 1.28
1804 1998 9.435688 GGATCATGCAAGTGTGTATACATATTA 57.564 33.333 9.18 0.00 39.39 0.98
1807 2001 9.606631 TCATGCAAGTGTGTATACATATTAACA 57.393 29.630 9.18 5.77 39.39 2.41
1808 2002 9.650371 CATGCAAGTGTGTATACATATTAACAC 57.350 33.333 9.18 10.89 42.00 3.32
1830 2024 8.579682 ACACACTTTGAAAGAATTTTATCTGC 57.420 30.769 12.53 0.00 39.27 4.26
1831 2025 8.196771 ACACACTTTGAAAGAATTTTATCTGCA 58.803 29.630 12.53 0.00 39.27 4.41
1832 2026 9.033481 CACACTTTGAAAGAATTTTATCTGCAA 57.967 29.630 12.53 0.00 39.27 4.08
1833 2027 9.768662 ACACTTTGAAAGAATTTTATCTGCAAT 57.231 25.926 12.53 0.00 39.27 3.56
1835 2029 9.985730 ACTTTGAAAGAATTTTATCTGCAATCA 57.014 25.926 12.53 0.00 39.27 2.57
1837 2031 8.761575 TTGAAAGAATTTTATCTGCAATCACC 57.238 30.769 0.00 0.00 39.27 4.02
1838 2032 7.028962 TGAAAGAATTTTATCTGCAATCACCG 58.971 34.615 0.00 0.00 39.27 4.94
1839 2033 5.505173 AGAATTTTATCTGCAATCACCGG 57.495 39.130 0.00 0.00 0.00 5.28
1840 2034 5.192927 AGAATTTTATCTGCAATCACCGGA 58.807 37.500 9.46 0.00 0.00 5.14
1841 2035 5.297776 AGAATTTTATCTGCAATCACCGGAG 59.702 40.000 9.46 0.00 0.00 4.63
1842 2036 3.904800 TTTATCTGCAATCACCGGAGA 57.095 42.857 9.46 6.11 35.16 3.71
1843 2037 3.904800 TTATCTGCAATCACCGGAGAA 57.095 42.857 9.46 0.00 34.30 2.87
1844 2038 2.029838 ATCTGCAATCACCGGAGAAC 57.970 50.000 9.46 0.06 34.30 3.01
1845 2039 0.036388 TCTGCAATCACCGGAGAACC 60.036 55.000 9.46 0.00 0.00 3.62
1846 2040 1.002624 TGCAATCACCGGAGAACCC 60.003 57.895 9.46 0.00 0.00 4.11
1847 2041 1.299976 GCAATCACCGGAGAACCCT 59.700 57.895 9.46 0.00 0.00 4.34
1848 2042 1.026718 GCAATCACCGGAGAACCCTG 61.027 60.000 9.46 3.86 0.00 4.45
1849 2043 0.613260 CAATCACCGGAGAACCCTGA 59.387 55.000 9.46 0.00 0.00 3.86
1850 2044 1.210478 CAATCACCGGAGAACCCTGAT 59.790 52.381 9.46 1.17 33.84 2.90
1851 2045 2.434336 CAATCACCGGAGAACCCTGATA 59.566 50.000 9.46 0.00 32.80 2.15
1852 2046 2.241281 TCACCGGAGAACCCTGATAA 57.759 50.000 9.46 0.00 0.00 1.75
1853 2047 2.759355 TCACCGGAGAACCCTGATAAT 58.241 47.619 9.46 0.00 0.00 1.28
1854 2048 2.434336 TCACCGGAGAACCCTGATAATG 59.566 50.000 9.46 0.00 0.00 1.90
1855 2049 1.141053 ACCGGAGAACCCTGATAATGC 59.859 52.381 9.46 0.00 0.00 3.56
1856 2050 1.140852 CCGGAGAACCCTGATAATGCA 59.859 52.381 0.00 0.00 0.00 3.96
1857 2051 2.224621 CCGGAGAACCCTGATAATGCAT 60.225 50.000 0.00 0.00 0.00 3.96
1858 2052 3.480470 CGGAGAACCCTGATAATGCATT 58.520 45.455 17.56 17.56 0.00 3.56
1859 2053 4.504864 CCGGAGAACCCTGATAATGCATTA 60.505 45.833 20.95 20.95 0.00 1.90
1860 2054 5.063204 CGGAGAACCCTGATAATGCATTAA 58.937 41.667 22.37 6.93 0.00 1.40
1861 2055 5.049405 CGGAGAACCCTGATAATGCATTAAC 60.049 44.000 22.37 19.64 0.00 2.01
1862 2056 5.241728 GGAGAACCCTGATAATGCATTAACC 59.758 44.000 22.37 16.74 0.00 2.85
1863 2057 5.140454 AGAACCCTGATAATGCATTAACCC 58.860 41.667 22.37 14.53 0.00 4.11
1864 2058 3.486383 ACCCTGATAATGCATTAACCCG 58.514 45.455 22.37 12.98 0.00 5.28
1865 2059 2.228822 CCCTGATAATGCATTAACCCGC 59.771 50.000 22.37 10.44 0.00 6.13
1866 2060 2.884012 CCTGATAATGCATTAACCCGCA 59.116 45.455 22.37 13.81 43.45 5.69
1867 2061 3.317711 CCTGATAATGCATTAACCCGCAA 59.682 43.478 22.37 0.00 42.37 4.85
1868 2062 4.202101 CCTGATAATGCATTAACCCGCAAA 60.202 41.667 22.37 0.00 42.37 3.68
1869 2063 5.509501 CCTGATAATGCATTAACCCGCAAAT 60.510 40.000 22.37 4.30 42.37 2.32
1870 2064 5.911752 TGATAATGCATTAACCCGCAAATT 58.088 33.333 22.37 2.52 42.37 1.82
1871 2065 7.043961 TGATAATGCATTAACCCGCAAATTA 57.956 32.000 22.37 0.00 42.37 1.40
1872 2066 7.144661 TGATAATGCATTAACCCGCAAATTAG 58.855 34.615 22.37 0.00 42.37 1.73
1873 2067 5.590530 AATGCATTAACCCGCAAATTAGA 57.409 34.783 11.02 0.00 42.37 2.10
1874 2068 5.590530 ATGCATTAACCCGCAAATTAGAA 57.409 34.783 0.00 0.00 42.37 2.10
1875 2069 5.392767 TGCATTAACCCGCAAATTAGAAA 57.607 34.783 0.00 0.00 34.59 2.52
1876 2070 5.971763 TGCATTAACCCGCAAATTAGAAAT 58.028 33.333 0.00 0.00 34.59 2.17
1877 2071 7.101652 TGCATTAACCCGCAAATTAGAAATA 57.898 32.000 0.00 0.00 34.59 1.40
1878 2072 6.975772 TGCATTAACCCGCAAATTAGAAATAC 59.024 34.615 0.00 0.00 34.59 1.89
1879 2073 7.147983 TGCATTAACCCGCAAATTAGAAATACT 60.148 33.333 0.00 0.00 34.59 2.12
1880 2074 7.704899 GCATTAACCCGCAAATTAGAAATACTT 59.295 33.333 0.00 0.00 0.00 2.24
1881 2075 9.581099 CATTAACCCGCAAATTAGAAATACTTT 57.419 29.630 0.00 0.00 0.00 2.66
1883 2077 9.984190 TTAACCCGCAAATTAGAAATACTTTTT 57.016 25.926 0.00 0.00 0.00 1.94
1884 2078 7.883229 ACCCGCAAATTAGAAATACTTTTTG 57.117 32.000 0.00 0.00 35.51 2.44
1885 2079 6.367695 ACCCGCAAATTAGAAATACTTTTTGC 59.632 34.615 7.84 7.84 44.11 3.68
1886 2080 6.367422 CCCGCAAATTAGAAATACTTTTTGCA 59.633 34.615 15.73 0.00 45.71 4.08
1887 2081 7.064490 CCCGCAAATTAGAAATACTTTTTGCAT 59.936 33.333 15.73 0.00 45.71 3.96
1888 2082 9.081997 CCGCAAATTAGAAATACTTTTTGCATA 57.918 29.630 15.73 0.00 45.71 3.14
1907 2101 8.999220 TTGCATAATTTTAATTCATGTCAGCA 57.001 26.923 0.00 0.00 0.00 4.41
1908 2102 9.602568 TTGCATAATTTTAATTCATGTCAGCAT 57.397 25.926 0.00 0.00 35.32 3.79
1920 2114 7.539712 TTCATGTCAGCATAACTAGTTAAGC 57.460 36.000 27.40 27.40 39.30 3.09
1921 2115 6.878317 TCATGTCAGCATAACTAGTTAAGCT 58.122 36.000 30.24 30.24 46.87 3.74
1922 2116 7.331026 TCATGTCAGCATAACTAGTTAAGCTT 58.669 34.615 32.27 20.44 44.57 3.74
1923 2117 8.474831 TCATGTCAGCATAACTAGTTAAGCTTA 58.525 33.333 32.27 25.26 44.57 3.09
1924 2118 9.265901 CATGTCAGCATAACTAGTTAAGCTTAT 57.734 33.333 32.27 24.64 44.57 1.73
1925 2119 9.838339 ATGTCAGCATAACTAGTTAAGCTTATT 57.162 29.630 32.27 19.25 44.57 1.40
1926 2120 9.098355 TGTCAGCATAACTAGTTAAGCTTATTG 57.902 33.333 32.27 24.26 44.57 1.90
1927 2121 8.552034 GTCAGCATAACTAGTTAAGCTTATTGG 58.448 37.037 32.27 23.43 44.57 3.16
1928 2122 8.265055 TCAGCATAACTAGTTAAGCTTATTGGT 58.735 33.333 32.27 20.42 44.57 3.67
1929 2123 8.893727 CAGCATAACTAGTTAAGCTTATTGGTT 58.106 33.333 32.27 14.32 44.57 3.67
1930 2124 9.462606 AGCATAACTAGTTAAGCTTATTGGTTT 57.537 29.630 30.24 12.60 44.57 3.27
1931 2125 9.717892 GCATAACTAGTTAAGCTTATTGGTTTC 57.282 33.333 27.38 2.86 36.96 2.78
1932 2126 9.916397 CATAACTAGTTAAGCTTATTGGTTTCG 57.084 33.333 18.88 10.79 37.56 3.46
1933 2127 7.974482 AACTAGTTAAGCTTATTGGTTTCGT 57.026 32.000 6.26 0.00 37.56 3.85
1935 2129 8.699283 ACTAGTTAAGCTTATTGGTTTCGTAG 57.301 34.615 7.08 1.68 37.56 3.51
1936 2130 6.980051 AGTTAAGCTTATTGGTTTCGTAGG 57.020 37.500 7.08 0.00 37.56 3.18
1937 2131 6.704310 AGTTAAGCTTATTGGTTTCGTAGGA 58.296 36.000 7.08 0.00 37.56 2.94
1938 2132 7.336396 AGTTAAGCTTATTGGTTTCGTAGGAT 58.664 34.615 7.08 0.00 37.56 3.24
1939 2133 7.827729 AGTTAAGCTTATTGGTTTCGTAGGATT 59.172 33.333 7.08 0.00 37.56 3.01
1940 2134 8.456471 GTTAAGCTTATTGGTTTCGTAGGATTT 58.544 33.333 7.08 0.00 37.56 2.17
1941 2135 6.679327 AGCTTATTGGTTTCGTAGGATTTC 57.321 37.500 0.00 0.00 0.00 2.17
1942 2136 6.177610 AGCTTATTGGTTTCGTAGGATTTCA 58.822 36.000 0.00 0.00 0.00 2.69
1943 2137 6.093633 AGCTTATTGGTTTCGTAGGATTTCAC 59.906 38.462 0.00 0.00 0.00 3.18
1944 2138 6.128117 GCTTATTGGTTTCGTAGGATTTCACA 60.128 38.462 0.00 0.00 0.00 3.58
1945 2139 5.880054 ATTGGTTTCGTAGGATTTCACAG 57.120 39.130 0.00 0.00 0.00 3.66
1946 2140 3.071479 TGGTTTCGTAGGATTTCACAGC 58.929 45.455 0.00 0.00 0.00 4.40
1947 2141 2.418976 GGTTTCGTAGGATTTCACAGCC 59.581 50.000 0.00 0.00 0.00 4.85
1948 2142 3.071479 GTTTCGTAGGATTTCACAGCCA 58.929 45.455 0.00 0.00 0.00 4.75
1949 2143 2.672961 TCGTAGGATTTCACAGCCAG 57.327 50.000 0.00 0.00 0.00 4.85
1950 2144 1.207089 TCGTAGGATTTCACAGCCAGG 59.793 52.381 0.00 0.00 0.00 4.45
1951 2145 1.066143 CGTAGGATTTCACAGCCAGGT 60.066 52.381 0.00 0.00 0.00 4.00
1952 2146 2.167693 CGTAGGATTTCACAGCCAGGTA 59.832 50.000 0.00 0.00 0.00 3.08
1953 2147 3.738281 CGTAGGATTTCACAGCCAGGTAG 60.738 52.174 0.00 0.00 0.00 3.18
1954 2148 2.269940 AGGATTTCACAGCCAGGTAGT 58.730 47.619 0.00 0.00 0.00 2.73
1955 2149 2.026822 AGGATTTCACAGCCAGGTAGTG 60.027 50.000 6.99 6.99 34.67 2.74
1973 2167 6.228995 GGTAGTGGCTTACCTGAAATATACC 58.771 44.000 10.35 0.00 40.00 2.73
1974 2168 5.968676 AGTGGCTTACCTGAAATATACCA 57.031 39.130 0.00 0.00 36.63 3.25
1975 2169 5.930135 AGTGGCTTACCTGAAATATACCAG 58.070 41.667 0.00 0.00 36.63 4.00
1976 2170 5.428783 AGTGGCTTACCTGAAATATACCAGT 59.571 40.000 0.00 0.00 36.63 4.00
1977 2171 6.069615 AGTGGCTTACCTGAAATATACCAGTT 60.070 38.462 0.00 0.00 36.63 3.16
1978 2172 7.126726 AGTGGCTTACCTGAAATATACCAGTTA 59.873 37.037 0.00 0.00 36.63 2.24
1979 2173 7.937394 GTGGCTTACCTGAAATATACCAGTTAT 59.063 37.037 0.00 0.00 36.63 1.89
1980 2174 8.154856 TGGCTTACCTGAAATATACCAGTTATC 58.845 37.037 0.00 0.00 36.63 1.75
1981 2175 8.376270 GGCTTACCTGAAATATACCAGTTATCT 58.624 37.037 0.00 0.00 0.00 1.98
1982 2176 9.780186 GCTTACCTGAAATATACCAGTTATCTT 57.220 33.333 0.00 0.00 0.00 2.40
1985 2179 8.331931 ACCTGAAATATACCAGTTATCTTCCA 57.668 34.615 0.00 0.00 0.00 3.53
1986 2180 8.778059 ACCTGAAATATACCAGTTATCTTCCAA 58.222 33.333 0.00 0.00 0.00 3.53
1987 2181 9.277783 CCTGAAATATACCAGTTATCTTCCAAG 57.722 37.037 0.00 0.00 0.00 3.61
1988 2182 9.838339 CTGAAATATACCAGTTATCTTCCAAGT 57.162 33.333 0.00 0.00 0.00 3.16
1989 2183 9.613428 TGAAATATACCAGTTATCTTCCAAGTG 57.387 33.333 0.00 0.00 0.00 3.16
1990 2184 9.614792 GAAATATACCAGTTATCTTCCAAGTGT 57.385 33.333 0.00 0.00 0.00 3.55
1995 2189 5.071250 ACCAGTTATCTTCCAAGTGTGTGTA 59.929 40.000 0.00 0.00 0.00 2.90
1997 2191 5.989168 CAGTTATCTTCCAAGTGTGTGTACA 59.011 40.000 0.00 0.00 0.00 2.90
2008 2202 3.863424 AGTGTGTGTACATATTAGCGCAC 59.137 43.478 11.47 14.41 39.39 5.34
2011 2205 4.328712 TGTGTGTACATATTAGCGCACTTG 59.671 41.667 11.47 1.96 41.33 3.16
2012 2206 3.868661 TGTGTACATATTAGCGCACTTGG 59.131 43.478 11.47 0.00 0.00 3.61
2021 2215 2.568090 CGCACTTGGGCATTGGAC 59.432 61.111 0.00 0.00 0.00 4.02
2022 2216 1.973281 CGCACTTGGGCATTGGACT 60.973 57.895 0.00 0.00 0.00 3.85
2025 2219 1.171308 CACTTGGGCATTGGACTGAG 58.829 55.000 0.00 0.00 0.00 3.35
2029 2250 3.266772 ACTTGGGCATTGGACTGAGAATA 59.733 43.478 0.00 0.00 0.00 1.75
2030 2251 3.281727 TGGGCATTGGACTGAGAATAC 57.718 47.619 0.00 0.00 0.00 1.89
2035 2301 5.455326 GGGCATTGGACTGAGAATACTGTAT 60.455 44.000 0.00 0.00 0.00 2.29
2073 2346 2.986479 CCAAAGTTTGGCGTATTGCTTC 59.014 45.455 21.39 0.00 45.17 3.86
2080 2353 2.346803 TGGCGTATTGCTTCTGTCTTC 58.653 47.619 0.00 0.00 45.43 2.87
2116 2389 9.295214 GATTTTCCTAGCAGCTTATTTTTCTTC 57.705 33.333 0.00 0.00 0.00 2.87
2120 2393 5.649831 CCTAGCAGCTTATTTTTCTTCTGGT 59.350 40.000 0.00 0.00 36.44 4.00
2141 2414 6.186957 TGGTTGCTCAGGTCATGTTAAATAT 58.813 36.000 0.00 0.00 0.00 1.28
2230 2503 1.374125 GGTGGTTGATTTTGGCGGC 60.374 57.895 0.00 0.00 0.00 6.53
2272 2545 2.669569 GCAGGCGGCAACTCTTCA 60.670 61.111 13.08 0.00 43.97 3.02
2273 2546 2.260869 GCAGGCGGCAACTCTTCAA 61.261 57.895 13.08 0.00 43.97 2.69
2275 2548 0.667993 CAGGCGGCAACTCTTCAAAA 59.332 50.000 13.08 0.00 0.00 2.44
2293 2566 6.245115 TCAAAAATGATACAGCACACTCAG 57.755 37.500 0.00 0.00 0.00 3.35
2353 2626 3.036429 GCTCCCTACCCTGCACCTG 62.036 68.421 0.00 0.00 0.00 4.00
2381 2654 1.507140 TATGGATCGCCCCACTCTTT 58.493 50.000 0.00 0.00 39.34 2.52
2416 2689 0.322098 CCAAACACAGGCATCGGGTA 60.322 55.000 0.00 0.00 0.00 3.69
2418 2691 0.398696 AAACACAGGCATCGGGTACA 59.601 50.000 0.00 0.00 0.00 2.90
2501 2782 4.276926 GCAATCTGGATTCCATCTTGTACC 59.723 45.833 20.16 7.78 31.61 3.34
2508 2789 5.363868 TGGATTCCATCTTGTACCTGACTAG 59.636 44.000 0.00 0.00 32.73 2.57
2512 2793 4.705507 TCCATCTTGTACCTGACTAGTCAC 59.294 45.833 21.74 12.37 35.46 3.67
2513 2794 4.707448 CCATCTTGTACCTGACTAGTCACT 59.293 45.833 21.74 11.87 35.46 3.41
2514 2795 5.186021 CCATCTTGTACCTGACTAGTCACTT 59.814 44.000 21.74 13.24 35.46 3.16
2515 2796 5.961396 TCTTGTACCTGACTAGTCACTTC 57.039 43.478 21.74 12.25 35.46 3.01
2516 2797 5.382616 TCTTGTACCTGACTAGTCACTTCA 58.617 41.667 21.74 14.43 35.46 3.02
2517 2798 6.010850 TCTTGTACCTGACTAGTCACTTCAT 58.989 40.000 21.74 7.93 35.46 2.57
2518 2799 6.493802 TCTTGTACCTGACTAGTCACTTCATT 59.506 38.462 21.74 5.16 35.46 2.57
2519 2800 6.025749 TGTACCTGACTAGTCACTTCATTG 57.974 41.667 21.74 9.97 35.46 2.82
2524 2805 4.318332 TGACTAGTCACTTCATTGCTTGG 58.682 43.478 21.74 0.00 34.14 3.61
2525 2806 3.679389 ACTAGTCACTTCATTGCTTGGG 58.321 45.455 0.00 0.00 0.00 4.12
2573 2855 9.787532 AAATGTGAAAATGTGTACATATAGTGC 57.212 29.630 5.45 0.00 35.10 4.40
2578 2860 8.450180 TGAAAATGTGTACATATAGTGCTTGTG 58.550 33.333 5.45 0.00 35.10 3.33
2601 2883 2.859165 TACTTCTTGAGCCTGGGTTG 57.141 50.000 0.00 0.00 0.00 3.77
2605 2887 0.112995 TCTTGAGCCTGGGTTGCATT 59.887 50.000 0.00 0.00 0.00 3.56
2644 2926 5.106830 CCAGCTTTGAAATTCCTGAAATTGC 60.107 40.000 0.00 0.00 37.64 3.56
2652 2934 7.894708 TGAAATTCCTGAAATTGCTTATCACA 58.105 30.769 0.00 0.00 37.64 3.58
2653 2935 8.533657 TGAAATTCCTGAAATTGCTTATCACAT 58.466 29.630 0.00 0.00 37.64 3.21
2655 2937 9.807649 AAATTCCTGAAATTGCTTATCACATAC 57.192 29.630 0.00 0.00 37.64 2.39
2656 2938 8.757982 ATTCCTGAAATTGCTTATCACATACT 57.242 30.769 0.00 0.00 0.00 2.12
2657 2939 7.792374 TCCTGAAATTGCTTATCACATACTC 57.208 36.000 0.00 0.00 0.00 2.59
2658 2940 6.767902 TCCTGAAATTGCTTATCACATACTCC 59.232 38.462 0.00 0.00 0.00 3.85
2659 2941 6.016777 CCTGAAATTGCTTATCACATACTCCC 60.017 42.308 0.00 0.00 0.00 4.30
2660 2942 6.662755 TGAAATTGCTTATCACATACTCCCT 58.337 36.000 0.00 0.00 0.00 4.20
2661 2943 6.767902 TGAAATTGCTTATCACATACTCCCTC 59.232 38.462 0.00 0.00 0.00 4.30
2662 2944 6.506538 AATTGCTTATCACATACTCCCTCT 57.493 37.500 0.00 0.00 0.00 3.69
2663 2945 7.618019 AATTGCTTATCACATACTCCCTCTA 57.382 36.000 0.00 0.00 0.00 2.43
2664 2946 7.805083 ATTGCTTATCACATACTCCCTCTAT 57.195 36.000 0.00 0.00 0.00 1.98
2665 2947 8.901472 ATTGCTTATCACATACTCCCTCTATA 57.099 34.615 0.00 0.00 0.00 1.31
2666 2948 7.704578 TGCTTATCACATACTCCCTCTATAC 57.295 40.000 0.00 0.00 0.00 1.47
2667 2949 7.238710 TGCTTATCACATACTCCCTCTATACA 58.761 38.462 0.00 0.00 0.00 2.29
2668 2950 7.176865 TGCTTATCACATACTCCCTCTATACAC 59.823 40.741 0.00 0.00 0.00 2.90
2669 2951 7.394923 GCTTATCACATACTCCCTCTATACACT 59.605 40.741 0.00 0.00 0.00 3.55
2670 2952 9.961264 CTTATCACATACTCCCTCTATACACTA 57.039 37.037 0.00 0.00 0.00 2.74
2673 2955 8.637196 TCACATACTCCCTCTATACACTAATG 57.363 38.462 0.00 0.00 0.00 1.90
2674 2956 8.225416 TCACATACTCCCTCTATACACTAATGT 58.775 37.037 0.00 0.00 43.30 2.71
2675 2957 9.516546 CACATACTCCCTCTATACACTAATGTA 57.483 37.037 0.00 0.00 45.37 2.29
2679 2961 8.694581 ACTCCCTCTATACACTAATGTAAGAC 57.305 38.462 0.00 0.00 44.47 3.01
2680 2962 7.444792 ACTCCCTCTATACACTAATGTAAGACG 59.555 40.741 0.00 0.00 44.47 4.18
2681 2963 7.285566 TCCCTCTATACACTAATGTAAGACGT 58.714 38.462 0.00 0.00 44.47 4.34
2682 2964 7.776969 TCCCTCTATACACTAATGTAAGACGTT 59.223 37.037 0.00 0.00 44.47 3.99
2683 2965 8.411683 CCCTCTATACACTAATGTAAGACGTTT 58.588 37.037 0.00 0.00 44.47 3.60
2684 2966 9.798994 CCTCTATACACTAATGTAAGACGTTTT 57.201 33.333 0.00 0.00 44.47 2.43
2687 2969 9.685005 CTATACACTAATGTAAGACGTTTTTGC 57.315 33.333 0.00 0.00 44.47 3.68
2688 2970 6.366315 ACACTAATGTAAGACGTTTTTGCA 57.634 33.333 0.00 1.87 37.26 4.08
2689 2971 6.427150 ACACTAATGTAAGACGTTTTTGCAG 58.573 36.000 0.00 0.00 37.26 4.41
2690 2972 6.037830 ACACTAATGTAAGACGTTTTTGCAGT 59.962 34.615 0.00 3.59 37.26 4.40
2691 2973 6.910433 CACTAATGTAAGACGTTTTTGCAGTT 59.090 34.615 9.23 7.12 0.00 3.16
2692 2974 7.111593 CACTAATGTAAGACGTTTTTGCAGTTC 59.888 37.037 9.23 0.00 0.00 3.01
2693 2975 4.948608 TGTAAGACGTTTTTGCAGTTCA 57.051 36.364 0.00 0.00 0.00 3.18
2694 2976 5.298197 TGTAAGACGTTTTTGCAGTTCAA 57.702 34.783 0.00 0.00 0.00 2.69
2695 2977 5.700846 TGTAAGACGTTTTTGCAGTTCAAA 58.299 33.333 0.00 0.00 42.50 2.69
2696 2978 6.326375 TGTAAGACGTTTTTGCAGTTCAAAT 58.674 32.000 0.00 0.00 43.53 2.32
2697 2979 6.809196 TGTAAGACGTTTTTGCAGTTCAAATT 59.191 30.769 0.00 0.00 43.53 1.82
2698 2980 7.968956 TGTAAGACGTTTTTGCAGTTCAAATTA 59.031 29.630 0.00 0.00 43.53 1.40
2699 2981 7.820044 AAGACGTTTTTGCAGTTCAAATTAA 57.180 28.000 0.00 0.00 43.53 1.40
2700 2982 7.820044 AGACGTTTTTGCAGTTCAAATTAAA 57.180 28.000 0.00 0.00 43.53 1.52
2701 2983 7.671827 AGACGTTTTTGCAGTTCAAATTAAAC 58.328 30.769 0.00 0.00 43.53 2.01
2702 2984 7.544217 AGACGTTTTTGCAGTTCAAATTAAACT 59.456 29.630 0.00 1.32 43.53 2.66
2807 3091 8.335532 TGGTAAATGGTTCATTCTACTTGAAG 57.664 34.615 0.00 0.00 38.18 3.02
2814 3098 7.679783 TGGTTCATTCTACTTGAAGATCTTCA 58.320 34.615 30.05 30.05 46.72 3.02
2832 3124 6.590234 TCTTCAAATATATGCGAGGCTAGA 57.410 37.500 0.00 0.00 0.00 2.43
2915 3207 6.996509 AGTATGATTTGAACCATTGTGCTTT 58.003 32.000 0.00 0.00 0.00 3.51
2930 3223 7.904461 CCATTGTGCTTTAAAAACACTGAAAAG 59.096 33.333 17.32 5.70 35.33 2.27
2956 3249 4.922206 TGTGCTCTCAATGGGACTTTATT 58.078 39.130 0.00 0.00 0.00 1.40
2986 3282 7.418337 TGCAGTCTACATAAATAGAACTCCA 57.582 36.000 0.00 0.00 32.97 3.86
2987 3283 8.023021 TGCAGTCTACATAAATAGAACTCCAT 57.977 34.615 0.00 0.00 32.97 3.41
2988 3284 7.928167 TGCAGTCTACATAAATAGAACTCCATG 59.072 37.037 0.00 0.00 32.97 3.66
2991 3287 7.071196 AGTCTACATAAATAGAACTCCATGGCA 59.929 37.037 6.96 0.00 32.97 4.92
3000 3296 9.474313 AAATAGAACTCCATGGCATAGTTTTTA 57.526 29.630 16.20 12.68 33.72 1.52
3003 3299 6.260936 AGAACTCCATGGCATAGTTTTTATCG 59.739 38.462 16.20 0.00 33.72 2.92
3008 3304 6.038161 TCCATGGCATAGTTTTTATCGTTCTG 59.962 38.462 6.96 0.00 0.00 3.02
3010 3306 7.255242 CCATGGCATAGTTTTTATCGTTCTGAT 60.255 37.037 0.00 0.00 41.30 2.90
3011 3307 8.773645 CATGGCATAGTTTTTATCGTTCTGATA 58.226 33.333 0.00 0.00 38.57 2.15
3064 3368 6.986817 AGAAATACACGATTAAGCTGTAGCAT 59.013 34.615 6.65 0.00 45.16 3.79
3072 3376 5.904080 CGATTAAGCTGTAGCATTAAGTTGC 59.096 40.000 6.65 0.00 45.16 4.17
3076 3380 2.024414 CTGTAGCATTAAGTTGCCCCC 58.976 52.381 0.00 0.00 43.83 5.40
3118 3507 4.732672 AAGTAACTAACTTCGGCCTAGG 57.267 45.455 3.67 3.67 45.64 3.02
3169 3558 7.553881 AAACCACCTATCTGATTAATTCACG 57.446 36.000 0.00 0.00 0.00 4.35
3349 3739 1.270839 ACCCCAAGTTCATGTCGTCTG 60.271 52.381 0.00 0.00 0.00 3.51
3358 3748 2.076100 TCATGTCGTCTGTTTGATGCC 58.924 47.619 0.00 0.00 0.00 4.40
3359 3749 1.805943 CATGTCGTCTGTTTGATGCCA 59.194 47.619 0.00 0.00 0.00 4.92
3576 3966 6.955963 CAGCATATCTTTGAGTACGAAAACAC 59.044 38.462 0.00 0.00 0.00 3.32
3628 4018 3.511362 TGGTGCTGTGAACCACATT 57.489 47.368 0.00 0.00 43.71 2.71
3751 4142 2.948979 CTGACCATCTCTCTTAGTCGCT 59.051 50.000 0.00 0.00 0.00 4.93
3951 4353 5.844301 ATTGTCCATTTGAAACGAATTGC 57.156 34.783 0.00 0.00 0.00 3.56
4035 4453 2.487746 TGGGTGTCCTGATGCCTATA 57.512 50.000 0.00 0.00 0.00 1.31
4057 4475 9.500785 CTATATTTTTGCTTCAAAGGGGAAAAA 57.499 29.630 7.34 7.34 43.09 1.94
4080 4500 3.118811 GGAGATGAGAGAACTTCTGGTGG 60.119 52.174 0.00 0.00 35.87 4.61
4257 6119 3.303791 GCAACGAGAACCAGTTTACCAAG 60.304 47.826 0.00 0.00 0.00 3.61
4350 6216 2.541762 GAGAGAATACATCAGCAACGCC 59.458 50.000 0.00 0.00 0.00 5.68
4351 6217 2.169352 AGAGAATACATCAGCAACGCCT 59.831 45.455 0.00 0.00 0.00 5.52
4379 6246 2.961526 TCTATCAAGACAACGGGAGC 57.038 50.000 0.00 0.00 0.00 4.70
4457 6324 1.219393 CCCGACCCAGCTCTTCTTC 59.781 63.158 0.00 0.00 0.00 2.87
4475 6342 3.005050 TCTTCTTGTTGAATGGCAGCTTG 59.995 43.478 0.00 0.00 33.71 4.01
4538 6406 0.971386 AGCCAAAATCAAGCAGGTGG 59.029 50.000 0.00 0.00 0.00 4.61
4549 6417 0.689623 AGCAGGTGGAGAAACTCAGG 59.310 55.000 0.00 0.00 31.08 3.86
4585 6453 2.032377 CGTCAAGTGTAATGCGGTGTTT 60.032 45.455 0.00 0.00 0.00 2.83
4591 6459 2.160813 GTGTAATGCGGTGTTTACAGGG 59.839 50.000 0.00 0.00 38.58 4.45
4619 6487 2.037511 ACCAATTTCCGTCTTACCGTCA 59.962 45.455 0.00 0.00 0.00 4.35
4622 6490 1.039068 TTTCCGTCTTACCGTCACCA 58.961 50.000 0.00 0.00 0.00 4.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
141 142 5.728471 CTCTCTTCACATCTTTTCTAGCCA 58.272 41.667 0.00 0.00 0.00 4.75
158 159 3.642848 TGCAAAATCCCAAAAGCTCTCTT 59.357 39.130 0.00 0.00 0.00 2.85
183 184 2.827322 CCTCTCACAATGGCAAATTGGA 59.173 45.455 13.93 8.46 33.56 3.53
206 207 3.644966 TTGATCCCAAAATCTAGCCGT 57.355 42.857 0.00 0.00 0.00 5.68
241 242 7.549839 TCTCGATGATCATATTGTGCATGATA 58.450 34.615 8.54 0.00 41.96 2.15
339 358 2.366153 AAAACGGGCCACCCTCACAT 62.366 55.000 4.39 0.00 42.67 3.21
656 754 2.584791 CTGCTGAAAAATTTAGCGCGT 58.415 42.857 8.43 0.00 40.24 6.01
700 798 0.940833 TGATCGTCAGTTTTTGCGCA 59.059 45.000 5.66 5.66 0.00 6.09
767 874 0.523072 CAATGTTGGAGACGGCTTGG 59.477 55.000 0.00 0.00 0.00 3.61
768 875 1.238439 ACAATGTTGGAGACGGCTTG 58.762 50.000 0.00 0.00 0.00 4.01
769 876 1.981256 AACAATGTTGGAGACGGCTT 58.019 45.000 0.00 0.00 0.00 4.35
770 877 1.880027 GAAACAATGTTGGAGACGGCT 59.120 47.619 0.00 0.00 0.00 5.52
771 878 1.606668 TGAAACAATGTTGGAGACGGC 59.393 47.619 0.00 0.00 0.00 5.68
772 879 3.268013 GTGAAACAATGTTGGAGACGG 57.732 47.619 0.00 0.00 36.32 4.79
783 890 7.811236 CTCTAATGAGCATTTGTGTGAAACAAT 59.189 33.333 0.52 0.00 40.51 2.71
784 891 7.140705 CTCTAATGAGCATTTGTGTGAAACAA 58.859 34.615 0.52 0.00 40.51 2.83
785 892 6.262944 ACTCTAATGAGCATTTGTGTGAAACA 59.737 34.615 10.09 0.00 44.50 2.83
786 893 6.672147 ACTCTAATGAGCATTTGTGTGAAAC 58.328 36.000 10.09 0.00 43.85 2.78
787 894 6.882610 ACTCTAATGAGCATTTGTGTGAAA 57.117 33.333 10.09 0.00 43.85 2.69
788 895 9.665719 TTATACTCTAATGAGCATTTGTGTGAA 57.334 29.630 16.65 10.81 43.85 3.18
789 896 9.098355 GTTATACTCTAATGAGCATTTGTGTGA 57.902 33.333 16.65 7.10 43.85 3.58
790 897 8.338259 GGTTATACTCTAATGAGCATTTGTGTG 58.662 37.037 16.65 7.51 43.85 3.82
791 898 8.267894 AGGTTATACTCTAATGAGCATTTGTGT 58.732 33.333 13.64 13.64 43.85 3.72
792 899 8.668510 AGGTTATACTCTAATGAGCATTTGTG 57.331 34.615 0.52 3.58 43.85 3.33
817 924 9.715123 CGCATATGTTGTTTTGAACATCTATAA 57.285 29.630 4.29 0.00 43.88 0.98
818 925 9.103861 TCGCATATGTTGTTTTGAACATCTATA 57.896 29.630 4.29 0.00 43.88 1.31
819 926 7.984391 TCGCATATGTTGTTTTGAACATCTAT 58.016 30.769 4.29 0.00 43.88 1.98
820 927 7.333174 TCTCGCATATGTTGTTTTGAACATCTA 59.667 33.333 4.29 0.00 43.88 1.98
821 928 6.149308 TCTCGCATATGTTGTTTTGAACATCT 59.851 34.615 4.29 0.00 43.88 2.90
822 929 6.314018 TCTCGCATATGTTGTTTTGAACATC 58.686 36.000 4.29 0.00 43.88 3.06
823 930 6.252967 TCTCGCATATGTTGTTTTGAACAT 57.747 33.333 4.29 0.00 46.14 2.71
824 931 5.681337 TCTCGCATATGTTGTTTTGAACA 57.319 34.783 4.29 0.00 40.08 3.18
825 932 6.142817 ACTTCTCGCATATGTTGTTTTGAAC 58.857 36.000 4.29 0.00 0.00 3.18
826 933 6.312399 ACTTCTCGCATATGTTGTTTTGAA 57.688 33.333 4.29 0.23 0.00 2.69
827 934 5.940192 ACTTCTCGCATATGTTGTTTTGA 57.060 34.783 4.29 0.00 0.00 2.69
828 935 7.962373 TGAATACTTCTCGCATATGTTGTTTTG 59.038 33.333 4.29 0.00 0.00 2.44
829 936 8.039603 TGAATACTTCTCGCATATGTTGTTTT 57.960 30.769 4.29 0.00 0.00 2.43
830 937 7.609760 TGAATACTTCTCGCATATGTTGTTT 57.390 32.000 4.29 0.00 0.00 2.83
831 938 7.609760 TTGAATACTTCTCGCATATGTTGTT 57.390 32.000 4.29 0.00 0.00 2.83
832 939 7.609760 TTTGAATACTTCTCGCATATGTTGT 57.390 32.000 4.29 0.00 0.00 3.32
833 940 9.586150 GTATTTGAATACTTCTCGCATATGTTG 57.414 33.333 4.29 0.00 38.53 3.33
848 955 5.753921 CGTTCTCCCTCCAGTATTTGAATAC 59.246 44.000 5.88 5.88 41.19 1.89
849 956 5.163343 CCGTTCTCCCTCCAGTATTTGAATA 60.163 44.000 0.00 0.00 0.00 1.75
850 957 4.384208 CCGTTCTCCCTCCAGTATTTGAAT 60.384 45.833 0.00 0.00 0.00 2.57
851 958 3.055385 CCGTTCTCCCTCCAGTATTTGAA 60.055 47.826 0.00 0.00 0.00 2.69
852 959 2.500098 CCGTTCTCCCTCCAGTATTTGA 59.500 50.000 0.00 0.00 0.00 2.69
853 960 2.236395 ACCGTTCTCCCTCCAGTATTTG 59.764 50.000 0.00 0.00 0.00 2.32
854 961 2.547990 ACCGTTCTCCCTCCAGTATTT 58.452 47.619 0.00 0.00 0.00 1.40
855 962 2.249309 ACCGTTCTCCCTCCAGTATT 57.751 50.000 0.00 0.00 0.00 1.89
856 963 3.614568 ATACCGTTCTCCCTCCAGTAT 57.385 47.619 0.00 0.00 0.00 2.12
857 964 3.393426 AATACCGTTCTCCCTCCAGTA 57.607 47.619 0.00 0.00 0.00 2.74
858 965 2.249309 AATACCGTTCTCCCTCCAGT 57.751 50.000 0.00 0.00 0.00 4.00
859 966 3.197983 AGAAAATACCGTTCTCCCTCCAG 59.802 47.826 0.00 0.00 29.04 3.86
860 967 3.178865 AGAAAATACCGTTCTCCCTCCA 58.821 45.455 0.00 0.00 29.04 3.86
861 968 3.794717 GAGAAAATACCGTTCTCCCTCC 58.205 50.000 3.30 0.00 43.45 4.30
867 974 4.537135 TGCTCAGAGAAAATACCGTTCT 57.463 40.909 0.00 0.00 38.05 3.01
868 975 5.803020 ATTGCTCAGAGAAAATACCGTTC 57.197 39.130 0.00 0.00 0.00 3.95
869 976 6.016276 ACAAATTGCTCAGAGAAAATACCGTT 60.016 34.615 0.00 0.00 0.00 4.44
870 977 5.473504 ACAAATTGCTCAGAGAAAATACCGT 59.526 36.000 0.00 0.00 0.00 4.83
871 978 5.942872 ACAAATTGCTCAGAGAAAATACCG 58.057 37.500 0.00 0.00 0.00 4.02
872 979 7.653311 ACAAACAAATTGCTCAGAGAAAATACC 59.347 33.333 0.00 0.00 43.13 2.73
873 980 8.482429 CACAAACAAATTGCTCAGAGAAAATAC 58.518 33.333 0.00 0.00 43.13 1.89
874 981 7.652909 CCACAAACAAATTGCTCAGAGAAAATA 59.347 33.333 0.00 0.00 43.13 1.40
875 982 6.480981 CCACAAACAAATTGCTCAGAGAAAAT 59.519 34.615 0.00 0.00 43.13 1.82
876 983 5.811613 CCACAAACAAATTGCTCAGAGAAAA 59.188 36.000 0.00 0.00 43.13 2.29
877 984 5.126869 TCCACAAACAAATTGCTCAGAGAAA 59.873 36.000 0.00 0.00 43.13 2.52
878 985 4.644234 TCCACAAACAAATTGCTCAGAGAA 59.356 37.500 0.00 0.00 43.13 2.87
879 986 4.206375 TCCACAAACAAATTGCTCAGAGA 58.794 39.130 0.00 0.00 43.13 3.10
880 987 4.276678 TCTCCACAAACAAATTGCTCAGAG 59.723 41.667 0.00 0.00 43.13 3.35
881 988 4.206375 TCTCCACAAACAAATTGCTCAGA 58.794 39.130 0.00 0.00 43.13 3.27
882 989 4.572985 TCTCCACAAACAAATTGCTCAG 57.427 40.909 0.00 0.00 43.13 3.35
883 990 5.534207 AATCTCCACAAACAAATTGCTCA 57.466 34.783 0.00 0.00 43.13 4.26
884 991 5.984926 TGAAATCTCCACAAACAAATTGCTC 59.015 36.000 0.00 0.00 43.13 4.26
885 992 5.754890 GTGAAATCTCCACAAACAAATTGCT 59.245 36.000 0.00 0.00 43.13 3.91
886 993 5.332506 CGTGAAATCTCCACAAACAAATTGC 60.333 40.000 0.00 0.00 43.13 3.56
887 994 5.976534 TCGTGAAATCTCCACAAACAAATTG 59.023 36.000 0.00 0.00 44.95 2.32
888 995 6.142818 TCGTGAAATCTCCACAAACAAATT 57.857 33.333 0.00 0.00 34.36 1.82
903 1010 9.840427 CCAAATTTAGTTCAGTATTCGTGAAAT 57.160 29.630 0.00 0.00 35.71 2.17
943 1053 3.543494 CGCTTCGCCTGAATTTTGTATTG 59.457 43.478 0.00 0.00 32.61 1.90
945 1055 2.747446 ACGCTTCGCCTGAATTTTGTAT 59.253 40.909 0.00 0.00 32.61 2.29
946 1056 2.095969 CACGCTTCGCCTGAATTTTGTA 60.096 45.455 0.00 0.00 32.61 2.41
947 1057 0.951558 ACGCTTCGCCTGAATTTTGT 59.048 45.000 0.00 0.00 32.61 2.83
948 1058 1.330306 CACGCTTCGCCTGAATTTTG 58.670 50.000 0.00 0.00 32.61 2.44
1071 1186 3.535962 GAGAGCAGGAGGAGGGCG 61.536 72.222 0.00 0.00 0.00 6.13
1075 1190 0.468029 GAGAGGGAGAGCAGGAGGAG 60.468 65.000 0.00 0.00 0.00 3.69
1083 1207 0.759060 GGAGGAAGGAGAGGGAGAGC 60.759 65.000 0.00 0.00 0.00 4.09
1635 1772 4.148825 CGGAGTTCCCCAGCCGAG 62.149 72.222 0.00 0.00 46.29 4.63
1645 1782 7.116519 GCATTATAAGTACAAGATCCGGAGTTC 59.883 40.741 11.34 3.08 0.00 3.01
1646 1783 6.929606 GCATTATAAGTACAAGATCCGGAGTT 59.070 38.462 11.34 2.66 0.00 3.01
1647 1784 6.041637 TGCATTATAAGTACAAGATCCGGAGT 59.958 38.462 11.34 4.59 0.00 3.85
1648 1785 6.366332 GTGCATTATAAGTACAAGATCCGGAG 59.634 42.308 11.34 0.00 0.00 4.63
1650 1787 6.223852 AGTGCATTATAAGTACAAGATCCGG 58.776 40.000 0.00 0.00 0.00 5.14
1651 1788 8.700644 GTTAGTGCATTATAAGTACAAGATCCG 58.299 37.037 0.00 0.00 0.00 4.18
1655 1792 7.092802 TGGGGTTAGTGCATTATAAGTACAAGA 60.093 37.037 0.00 0.00 0.00 3.02
1656 1793 7.012044 GTGGGGTTAGTGCATTATAAGTACAAG 59.988 40.741 0.00 0.00 0.00 3.16
1658 1795 6.070136 TGTGGGGTTAGTGCATTATAAGTACA 60.070 38.462 0.00 0.00 0.00 2.90
1659 1796 6.350906 TGTGGGGTTAGTGCATTATAAGTAC 58.649 40.000 0.00 0.00 0.00 2.73
1660 1797 6.563037 TGTGGGGTTAGTGCATTATAAGTA 57.437 37.500 0.00 0.00 0.00 2.24
1662 1799 6.767524 TTTGTGGGGTTAGTGCATTATAAG 57.232 37.500 0.00 0.00 0.00 1.73
1665 1818 9.077885 CTTATATTTGTGGGGTTAGTGCATTAT 57.922 33.333 0.00 0.00 0.00 1.28
1677 1830 4.942761 AGCAATGCTTATATTTGTGGGG 57.057 40.909 0.00 0.00 33.89 4.96
1691 1844 9.872757 CCATTAATAAATCAATGAAAGCAATGC 57.127 29.630 0.00 0.00 34.69 3.56
1702 1855 9.822185 GGCTGAGAAAACCATTAATAAATCAAT 57.178 29.630 0.00 0.00 0.00 2.57
1706 1900 8.260114 CCTTGGCTGAGAAAACCATTAATAAAT 58.740 33.333 0.00 0.00 32.39 1.40
1710 1904 5.332743 TCCTTGGCTGAGAAAACCATTAAT 58.667 37.500 0.00 0.00 32.39 1.40
1713 1907 3.243359 TCCTTGGCTGAGAAAACCATT 57.757 42.857 0.00 0.00 32.39 3.16
1743 1937 9.614792 AGTTTCTTAACTAGTGACATTTGAAGT 57.385 29.630 0.00 0.00 42.73 3.01
1763 1957 5.769662 TGCATGATCCACAGTAAAAGTTTCT 59.230 36.000 0.00 0.00 0.00 2.52
1764 1958 6.012658 TGCATGATCCACAGTAAAAGTTTC 57.987 37.500 0.00 0.00 0.00 2.78
1767 1961 5.048504 CACTTGCATGATCCACAGTAAAAGT 60.049 40.000 6.60 0.00 0.00 2.66
1768 1962 5.048504 ACACTTGCATGATCCACAGTAAAAG 60.049 40.000 6.60 0.00 0.00 2.27
1769 1963 4.826733 ACACTTGCATGATCCACAGTAAAA 59.173 37.500 6.60 0.00 0.00 1.52
1770 1964 4.216042 CACACTTGCATGATCCACAGTAAA 59.784 41.667 6.60 0.00 0.00 2.01
1771 1965 3.752747 CACACTTGCATGATCCACAGTAA 59.247 43.478 6.60 0.00 0.00 2.24
1772 1966 3.244526 ACACACTTGCATGATCCACAGTA 60.245 43.478 6.60 0.00 0.00 2.74
1773 1967 2.156917 CACACTTGCATGATCCACAGT 58.843 47.619 6.60 0.00 0.00 3.55
1774 1968 2.156917 ACACACTTGCATGATCCACAG 58.843 47.619 6.60 0.00 0.00 3.66
1804 1998 9.034544 GCAGATAAAATTCTTTCAAAGTGTGTT 57.965 29.630 0.00 0.00 0.00 3.32
1805 1999 8.196771 TGCAGATAAAATTCTTTCAAAGTGTGT 58.803 29.630 0.00 0.00 0.00 3.72
1806 2000 8.578308 TGCAGATAAAATTCTTTCAAAGTGTG 57.422 30.769 0.00 0.00 0.00 3.82
1807 2001 9.768662 ATTGCAGATAAAATTCTTTCAAAGTGT 57.231 25.926 0.00 0.00 0.00 3.55
1809 2003 9.985730 TGATTGCAGATAAAATTCTTTCAAAGT 57.014 25.926 0.00 0.00 0.00 2.66
1811 2005 9.206870 GGTGATTGCAGATAAAATTCTTTCAAA 57.793 29.630 0.00 0.00 0.00 2.69
1812 2006 7.541783 CGGTGATTGCAGATAAAATTCTTTCAA 59.458 33.333 0.00 0.00 0.00 2.69
1813 2007 7.028962 CGGTGATTGCAGATAAAATTCTTTCA 58.971 34.615 0.00 0.00 0.00 2.69
1814 2008 6.473455 CCGGTGATTGCAGATAAAATTCTTTC 59.527 38.462 0.00 0.00 0.00 2.62
1815 2009 6.152661 TCCGGTGATTGCAGATAAAATTCTTT 59.847 34.615 0.00 0.00 0.00 2.52
1816 2010 5.652014 TCCGGTGATTGCAGATAAAATTCTT 59.348 36.000 0.00 0.00 0.00 2.52
1817 2011 5.192927 TCCGGTGATTGCAGATAAAATTCT 58.807 37.500 0.00 0.00 0.00 2.40
1818 2012 5.296780 TCTCCGGTGATTGCAGATAAAATTC 59.703 40.000 0.00 0.00 0.00 2.17
1819 2013 5.192927 TCTCCGGTGATTGCAGATAAAATT 58.807 37.500 0.00 0.00 0.00 1.82
1820 2014 4.780815 TCTCCGGTGATTGCAGATAAAAT 58.219 39.130 0.00 0.00 0.00 1.82
1821 2015 4.214986 TCTCCGGTGATTGCAGATAAAA 57.785 40.909 0.00 0.00 0.00 1.52
1822 2016 3.904800 TCTCCGGTGATTGCAGATAAA 57.095 42.857 0.00 0.00 0.00 1.40
1823 2017 3.531538 GTTCTCCGGTGATTGCAGATAA 58.468 45.455 7.11 0.00 0.00 1.75
1824 2018 2.158957 GGTTCTCCGGTGATTGCAGATA 60.159 50.000 7.11 0.00 0.00 1.98
1825 2019 1.407437 GGTTCTCCGGTGATTGCAGAT 60.407 52.381 7.11 0.00 0.00 2.90
1826 2020 0.036388 GGTTCTCCGGTGATTGCAGA 60.036 55.000 7.11 0.00 0.00 4.26
1827 2021 1.026718 GGGTTCTCCGGTGATTGCAG 61.027 60.000 7.11 0.00 33.83 4.41
1828 2022 1.002624 GGGTTCTCCGGTGATTGCA 60.003 57.895 7.11 0.00 33.83 4.08
1829 2023 1.026718 CAGGGTTCTCCGGTGATTGC 61.027 60.000 7.11 1.27 41.52 3.56
1830 2024 0.613260 TCAGGGTTCTCCGGTGATTG 59.387 55.000 7.11 4.58 41.52 2.67
1831 2025 1.584724 ATCAGGGTTCTCCGGTGATT 58.415 50.000 7.11 0.00 41.52 2.57
1832 2026 2.471815 TATCAGGGTTCTCCGGTGAT 57.528 50.000 7.11 6.86 39.67 3.06
1833 2027 2.241281 TTATCAGGGTTCTCCGGTGA 57.759 50.000 0.00 0.06 41.52 4.02
1834 2028 2.838736 CATTATCAGGGTTCTCCGGTG 58.161 52.381 0.00 0.00 41.52 4.94
1835 2029 1.141053 GCATTATCAGGGTTCTCCGGT 59.859 52.381 0.00 0.00 41.52 5.28
1836 2030 1.140852 TGCATTATCAGGGTTCTCCGG 59.859 52.381 0.00 0.00 41.52 5.14
1837 2031 2.620251 TGCATTATCAGGGTTCTCCG 57.380 50.000 0.00 0.00 41.52 4.63
1838 2032 5.241728 GGTTAATGCATTATCAGGGTTCTCC 59.758 44.000 19.51 6.52 0.00 3.71
1839 2033 5.241728 GGGTTAATGCATTATCAGGGTTCTC 59.758 44.000 19.51 4.31 0.00 2.87
1840 2034 5.140454 GGGTTAATGCATTATCAGGGTTCT 58.860 41.667 19.51 0.00 0.00 3.01
1841 2035 4.023193 CGGGTTAATGCATTATCAGGGTTC 60.023 45.833 19.51 5.55 0.00 3.62
1842 2036 3.888930 CGGGTTAATGCATTATCAGGGTT 59.111 43.478 19.51 0.00 0.00 4.11
1843 2037 3.486383 CGGGTTAATGCATTATCAGGGT 58.514 45.455 19.51 0.00 0.00 4.34
1844 2038 2.228822 GCGGGTTAATGCATTATCAGGG 59.771 50.000 19.51 11.93 0.00 4.45
1845 2039 2.884012 TGCGGGTTAATGCATTATCAGG 59.116 45.455 19.51 14.01 35.90 3.86
1846 2040 4.566545 TTGCGGGTTAATGCATTATCAG 57.433 40.909 19.51 15.81 41.42 2.90
1847 2041 4.991153 TTTGCGGGTTAATGCATTATCA 57.009 36.364 19.51 3.34 41.42 2.15
1848 2042 7.367285 TCTAATTTGCGGGTTAATGCATTATC 58.633 34.615 19.51 17.62 41.42 1.75
1849 2043 7.283625 TCTAATTTGCGGGTTAATGCATTAT 57.716 32.000 19.51 3.81 41.42 1.28
1850 2044 6.701145 TCTAATTTGCGGGTTAATGCATTA 57.299 33.333 15.21 15.21 41.42 1.90
1851 2045 5.590530 TCTAATTTGCGGGTTAATGCATT 57.409 34.783 17.56 17.56 41.42 3.56
1852 2046 5.590530 TTCTAATTTGCGGGTTAATGCAT 57.409 34.783 0.00 0.00 41.42 3.96
1853 2047 5.392767 TTTCTAATTTGCGGGTTAATGCA 57.607 34.783 0.00 0.00 39.81 3.96
1854 2048 7.200455 AGTATTTCTAATTTGCGGGTTAATGC 58.800 34.615 0.00 0.00 0.00 3.56
1855 2049 9.581099 AAAGTATTTCTAATTTGCGGGTTAATG 57.419 29.630 0.00 0.00 27.08 1.90
1857 2051 9.984190 AAAAAGTATTTCTAATTTGCGGGTTAA 57.016 25.926 0.00 0.00 37.28 2.01
1858 2052 9.413048 CAAAAAGTATTTCTAATTTGCGGGTTA 57.587 29.630 0.00 0.00 37.28 2.85
1859 2053 7.095397 GCAAAAAGTATTTCTAATTTGCGGGTT 60.095 33.333 5.43 0.00 42.89 4.11
1860 2054 6.367695 GCAAAAAGTATTTCTAATTTGCGGGT 59.632 34.615 5.43 0.00 42.89 5.28
1861 2055 6.761117 GCAAAAAGTATTTCTAATTTGCGGG 58.239 36.000 5.43 0.00 42.89 6.13
1881 2075 9.433153 TGCTGACATGAATTAAAATTATGCAAA 57.567 25.926 0.00 0.00 0.00 3.68
1882 2076 8.999220 TGCTGACATGAATTAAAATTATGCAA 57.001 26.923 0.00 0.00 0.00 4.08
1894 2088 8.616076 GCTTAACTAGTTATGCTGACATGAATT 58.384 33.333 31.39 2.43 40.73 2.17
1895 2089 8.147642 GCTTAACTAGTTATGCTGACATGAAT 57.852 34.615 31.39 2.76 40.73 2.57
1896 2090 7.539712 GCTTAACTAGTTATGCTGACATGAA 57.460 36.000 31.39 11.02 40.73 2.57
1905 2099 9.717892 GAAACCAATAAGCTTAACTAGTTATGC 57.282 33.333 31.52 31.52 42.81 3.14
1906 2100 9.916397 CGAAACCAATAAGCTTAACTAGTTATG 57.084 33.333 15.92 17.88 0.00 1.90
1907 2101 9.662947 ACGAAACCAATAAGCTTAACTAGTTAT 57.337 29.630 15.92 4.11 0.00 1.89
1909 2103 7.974482 ACGAAACCAATAAGCTTAACTAGTT 57.026 32.000 13.68 13.68 0.00 2.24
1910 2104 7.763071 CCTACGAAACCAATAAGCTTAACTAGT 59.237 37.037 10.85 3.30 0.00 2.57
1911 2105 7.977853 TCCTACGAAACCAATAAGCTTAACTAG 59.022 37.037 10.85 2.66 0.00 2.57
1912 2106 7.839907 TCCTACGAAACCAATAAGCTTAACTA 58.160 34.615 10.85 0.00 0.00 2.24
1913 2107 6.704310 TCCTACGAAACCAATAAGCTTAACT 58.296 36.000 10.85 0.00 0.00 2.24
1914 2108 6.973229 TCCTACGAAACCAATAAGCTTAAC 57.027 37.500 10.85 0.00 0.00 2.01
1915 2109 8.570068 AAATCCTACGAAACCAATAAGCTTAA 57.430 30.769 10.85 0.00 0.00 1.85
1916 2110 7.825270 TGAAATCCTACGAAACCAATAAGCTTA 59.175 33.333 8.99 8.99 0.00 3.09
1917 2111 6.657541 TGAAATCCTACGAAACCAATAAGCTT 59.342 34.615 3.48 3.48 0.00 3.74
1918 2112 6.093633 GTGAAATCCTACGAAACCAATAAGCT 59.906 38.462 0.00 0.00 0.00 3.74
1919 2113 6.128117 TGTGAAATCCTACGAAACCAATAAGC 60.128 38.462 0.00 0.00 0.00 3.09
1920 2114 7.372451 TGTGAAATCCTACGAAACCAATAAG 57.628 36.000 0.00 0.00 0.00 1.73
1921 2115 6.128117 GCTGTGAAATCCTACGAAACCAATAA 60.128 38.462 0.00 0.00 0.00 1.40
1922 2116 5.353123 GCTGTGAAATCCTACGAAACCAATA 59.647 40.000 0.00 0.00 0.00 1.90
1923 2117 4.156008 GCTGTGAAATCCTACGAAACCAAT 59.844 41.667 0.00 0.00 0.00 3.16
1924 2118 3.500680 GCTGTGAAATCCTACGAAACCAA 59.499 43.478 0.00 0.00 0.00 3.67
1925 2119 3.071479 GCTGTGAAATCCTACGAAACCA 58.929 45.455 0.00 0.00 0.00 3.67
1926 2120 2.418976 GGCTGTGAAATCCTACGAAACC 59.581 50.000 0.00 0.00 0.00 3.27
1927 2121 3.071479 TGGCTGTGAAATCCTACGAAAC 58.929 45.455 0.00 0.00 0.00 2.78
1928 2122 3.334691 CTGGCTGTGAAATCCTACGAAA 58.665 45.455 0.00 0.00 0.00 3.46
1929 2123 2.354704 CCTGGCTGTGAAATCCTACGAA 60.355 50.000 0.00 0.00 0.00 3.85
1930 2124 1.207089 CCTGGCTGTGAAATCCTACGA 59.793 52.381 0.00 0.00 0.00 3.43
1931 2125 1.066143 ACCTGGCTGTGAAATCCTACG 60.066 52.381 0.00 0.00 0.00 3.51
1932 2126 2.789409 ACCTGGCTGTGAAATCCTAC 57.211 50.000 0.00 0.00 0.00 3.18
1933 2127 3.197766 CACTACCTGGCTGTGAAATCCTA 59.802 47.826 12.51 0.00 33.95 2.94
1934 2128 2.026822 CACTACCTGGCTGTGAAATCCT 60.027 50.000 12.51 0.00 33.95 3.24
1935 2129 2.359900 CACTACCTGGCTGTGAAATCC 58.640 52.381 12.51 0.00 33.95 3.01
1936 2130 2.359900 CCACTACCTGGCTGTGAAATC 58.640 52.381 17.62 0.00 33.95 2.17
1937 2131 2.496899 CCACTACCTGGCTGTGAAAT 57.503 50.000 17.62 0.00 33.95 2.17
1949 2143 6.183361 TGGTATATTTCAGGTAAGCCACTACC 60.183 42.308 0.00 0.00 41.59 3.18
1950 2144 6.823497 TGGTATATTTCAGGTAAGCCACTAC 58.177 40.000 0.00 0.00 37.19 2.73
1951 2145 6.614087 ACTGGTATATTTCAGGTAAGCCACTA 59.386 38.462 9.02 0.00 37.19 2.74
1952 2146 5.428783 ACTGGTATATTTCAGGTAAGCCACT 59.571 40.000 9.02 0.00 37.19 4.00
1953 2147 5.681639 ACTGGTATATTTCAGGTAAGCCAC 58.318 41.667 9.02 0.00 37.19 5.01
1954 2148 5.968676 ACTGGTATATTTCAGGTAAGCCA 57.031 39.130 9.02 0.00 37.19 4.75
1955 2149 8.376270 AGATAACTGGTATATTTCAGGTAAGCC 58.624 37.037 6.79 0.00 36.84 4.35
1956 2150 9.780186 AAGATAACTGGTATATTTCAGGTAAGC 57.220 33.333 6.79 3.90 36.84 3.09
1959 2153 9.442062 TGGAAGATAACTGGTATATTTCAGGTA 57.558 33.333 0.00 5.57 37.55 3.08
1960 2154 8.331931 TGGAAGATAACTGGTATATTTCAGGT 57.668 34.615 0.00 5.66 35.47 4.00
1961 2155 9.277783 CTTGGAAGATAACTGGTATATTTCAGG 57.722 37.037 1.69 0.00 31.85 3.86
1962 2156 9.838339 ACTTGGAAGATAACTGGTATATTTCAG 57.162 33.333 1.69 0.52 31.85 3.02
1963 2157 9.613428 CACTTGGAAGATAACTGGTATATTTCA 57.387 33.333 0.00 0.00 28.74 2.69
1964 2158 9.614792 ACACTTGGAAGATAACTGGTATATTTC 57.385 33.333 0.00 0.00 0.00 2.17
1965 2159 9.396022 CACACTTGGAAGATAACTGGTATATTT 57.604 33.333 0.00 0.00 0.00 1.40
1966 2160 8.548877 ACACACTTGGAAGATAACTGGTATATT 58.451 33.333 0.00 0.00 0.00 1.28
1967 2161 7.987458 CACACACTTGGAAGATAACTGGTATAT 59.013 37.037 0.00 0.00 0.00 0.86
1968 2162 7.038587 ACACACACTTGGAAGATAACTGGTATA 60.039 37.037 0.00 0.00 0.00 1.47
1969 2163 6.173339 CACACACTTGGAAGATAACTGGTAT 58.827 40.000 0.00 0.00 0.00 2.73
1970 2164 5.071250 ACACACACTTGGAAGATAACTGGTA 59.929 40.000 0.00 0.00 0.00 3.25
1971 2165 4.141482 ACACACACTTGGAAGATAACTGGT 60.141 41.667 0.00 0.00 0.00 4.00
1972 2166 4.389374 ACACACACTTGGAAGATAACTGG 58.611 43.478 0.00 0.00 0.00 4.00
1973 2167 5.989168 TGTACACACACTTGGAAGATAACTG 59.011 40.000 0.00 0.00 0.00 3.16
1974 2168 6.169557 TGTACACACACTTGGAAGATAACT 57.830 37.500 0.00 0.00 0.00 2.24
1975 2169 8.718102 ATATGTACACACACTTGGAAGATAAC 57.282 34.615 0.00 0.00 37.54 1.89
1978 2172 7.495934 GCTAATATGTACACACACTTGGAAGAT 59.504 37.037 0.00 0.00 37.54 2.40
1979 2173 6.816640 GCTAATATGTACACACACTTGGAAGA 59.183 38.462 0.00 0.00 37.54 2.87
1980 2174 6.237835 CGCTAATATGTACACACACTTGGAAG 60.238 42.308 0.00 0.00 37.54 3.46
1981 2175 5.579119 CGCTAATATGTACACACACTTGGAA 59.421 40.000 0.00 0.00 37.54 3.53
1982 2176 5.106442 CGCTAATATGTACACACACTTGGA 58.894 41.667 0.00 0.00 37.54 3.53
1983 2177 4.260212 GCGCTAATATGTACACACACTTGG 60.260 45.833 0.00 0.00 37.54 3.61
1984 2178 4.328712 TGCGCTAATATGTACACACACTTG 59.671 41.667 9.73 0.00 37.54 3.16
1985 2179 4.328983 GTGCGCTAATATGTACACACACTT 59.671 41.667 9.73 0.00 37.54 3.16
1986 2180 3.863424 GTGCGCTAATATGTACACACACT 59.137 43.478 9.73 0.00 37.54 3.55
1987 2181 3.863424 AGTGCGCTAATATGTACACACAC 59.137 43.478 9.73 0.00 37.54 3.82
1988 2182 4.118093 AGTGCGCTAATATGTACACACA 57.882 40.909 9.73 0.00 39.52 3.72
1989 2183 4.260212 CCAAGTGCGCTAATATGTACACAC 60.260 45.833 9.73 0.00 0.00 3.82
1990 2184 3.868661 CCAAGTGCGCTAATATGTACACA 59.131 43.478 9.73 0.00 0.00 3.72
1995 2189 1.308998 GCCCAAGTGCGCTAATATGT 58.691 50.000 9.73 0.00 0.00 2.29
1997 2191 2.276732 ATGCCCAAGTGCGCTAATAT 57.723 45.000 9.73 0.00 0.00 1.28
2008 2202 2.205022 TTCTCAGTCCAATGCCCAAG 57.795 50.000 0.00 0.00 0.00 3.61
2011 2205 3.209410 CAGTATTCTCAGTCCAATGCCC 58.791 50.000 0.00 0.00 0.00 5.36
2012 2206 3.878778 ACAGTATTCTCAGTCCAATGCC 58.121 45.455 0.00 0.00 0.00 4.40
2017 2211 9.109393 GCATAAAAATACAGTATTCTCAGTCCA 57.891 33.333 6.26 0.00 0.00 4.02
2053 2319 3.670055 CAGAAGCAATACGCCAAACTTTG 59.330 43.478 0.00 0.00 44.04 2.77
2056 2322 2.484264 GACAGAAGCAATACGCCAAACT 59.516 45.455 0.00 0.00 44.04 2.66
2063 2336 3.242518 TCACGAAGACAGAAGCAATACG 58.757 45.455 0.00 0.00 0.00 3.06
2080 2353 5.728898 GCTGCTAGGAAAATCAATCTTCACG 60.729 44.000 0.00 0.00 0.00 4.35
2095 2368 5.882557 CCAGAAGAAAAATAAGCTGCTAGGA 59.117 40.000 0.90 0.00 0.00 2.94
2116 2389 1.901591 AACATGACCTGAGCAACCAG 58.098 50.000 0.00 0.00 0.00 4.00
2120 2393 7.067372 CCTCAATATTTAACATGACCTGAGCAA 59.933 37.037 0.00 0.00 0.00 3.91
2141 2414 3.149196 GGTCTGTCAAAGAATGCCTCAA 58.851 45.455 0.00 0.00 36.40 3.02
2230 2503 7.017645 CAGATTTTGAATCGAGTTTGTACCAG 58.982 38.462 0.00 0.00 0.00 4.00
2272 2545 5.048504 CACCTGAGTGTGCTGTATCATTTTT 60.049 40.000 0.00 0.00 39.30 1.94
2273 2546 4.456911 CACCTGAGTGTGCTGTATCATTTT 59.543 41.667 0.00 0.00 39.30 1.82
2275 2548 3.603532 CACCTGAGTGTGCTGTATCATT 58.396 45.455 0.00 0.00 39.30 2.57
2293 2566 3.503363 TGACATCTTTGAGCAATGACACC 59.497 43.478 1.53 0.00 0.00 4.16
2305 2578 5.156355 GTGTAAGGCACAATGACATCTTTG 58.844 41.667 6.08 6.08 46.91 2.77
2353 2626 2.814336 GGGGCGATCCATATTTTCTGAC 59.186 50.000 0.00 0.00 37.22 3.51
2381 2654 3.219281 GTTTGGCTCCCTTGAAGTACAA 58.781 45.455 0.00 0.00 36.97 2.41
2501 2782 4.391216 CCAAGCAATGAAGTGACTAGTCAG 59.609 45.833 25.81 13.07 40.75 3.51
2508 2789 3.068024 TGAAACCCAAGCAATGAAGTGAC 59.932 43.478 0.00 0.00 0.00 3.67
2512 2793 4.524316 TGATGAAACCCAAGCAATGAAG 57.476 40.909 0.00 0.00 0.00 3.02
2513 2794 5.486735 AATGATGAAACCCAAGCAATGAA 57.513 34.783 0.00 0.00 0.00 2.57
2514 2795 6.602410 TTAATGATGAAACCCAAGCAATGA 57.398 33.333 0.00 0.00 0.00 2.57
2515 2796 7.852971 AATTAATGATGAAACCCAAGCAATG 57.147 32.000 0.00 0.00 0.00 2.82
2516 2797 8.102047 TGAAATTAATGATGAAACCCAAGCAAT 58.898 29.630 0.00 0.00 0.00 3.56
2517 2798 7.448420 TGAAATTAATGATGAAACCCAAGCAA 58.552 30.769 0.00 0.00 0.00 3.91
2518 2799 7.002250 TGAAATTAATGATGAAACCCAAGCA 57.998 32.000 0.00 0.00 0.00 3.91
2519 2800 9.598517 TTATGAAATTAATGATGAAACCCAAGC 57.401 29.630 0.00 0.00 0.00 4.01
2550 2831 8.450180 CAAGCACTATATGTACACATTTTCACA 58.550 33.333 0.00 0.00 37.76 3.58
2551 2832 8.450964 ACAAGCACTATATGTACACATTTTCAC 58.549 33.333 0.00 0.00 37.76 3.18
2552 2833 8.450180 CACAAGCACTATATGTACACATTTTCA 58.550 33.333 0.00 0.00 37.76 2.69
2559 2841 9.314321 AGTAAATCACAAGCACTATATGTACAC 57.686 33.333 0.00 0.00 0.00 2.90
2573 2855 5.106396 CCAGGCTCAAGAAGTAAATCACAAG 60.106 44.000 0.00 0.00 0.00 3.16
2578 2860 3.956744 ACCCAGGCTCAAGAAGTAAATC 58.043 45.455 0.00 0.00 0.00 2.17
2619 2901 3.665745 TTCAGGAATTTCAAAGCTGGC 57.334 42.857 0.00 0.00 0.00 4.85
2620 2902 5.106830 GCAATTTCAGGAATTTCAAAGCTGG 60.107 40.000 0.00 0.00 35.79 4.85
2644 2926 8.871629 AGTGTATAGAGGGAGTATGTGATAAG 57.128 38.462 0.00 0.00 0.00 1.73
2653 2935 9.790344 GTCTTACATTAGTGTATAGAGGGAGTA 57.210 37.037 0.00 0.00 40.35 2.59
2654 2936 7.444792 CGTCTTACATTAGTGTATAGAGGGAGT 59.555 40.741 14.87 0.00 40.35 3.85
2655 2937 7.444792 ACGTCTTACATTAGTGTATAGAGGGAG 59.555 40.741 20.54 8.67 40.35 4.30
2656 2938 7.285566 ACGTCTTACATTAGTGTATAGAGGGA 58.714 38.462 20.54 6.50 40.35 4.20
2657 2939 7.507733 ACGTCTTACATTAGTGTATAGAGGG 57.492 40.000 20.54 13.88 40.35 4.30
2658 2940 9.798994 AAAACGTCTTACATTAGTGTATAGAGG 57.201 33.333 17.90 17.90 40.35 3.69
2661 2943 9.685005 GCAAAAACGTCTTACATTAGTGTATAG 57.315 33.333 0.00 1.20 40.35 1.31
2662 2944 9.205719 TGCAAAAACGTCTTACATTAGTGTATA 57.794 29.630 0.00 0.00 40.35 1.47
2663 2945 8.090250 TGCAAAAACGTCTTACATTAGTGTAT 57.910 30.769 0.00 0.00 40.35 2.29
2664 2946 7.225145 ACTGCAAAAACGTCTTACATTAGTGTA 59.775 33.333 0.00 0.00 39.77 2.90
2665 2947 6.037830 ACTGCAAAAACGTCTTACATTAGTGT 59.962 34.615 0.00 0.00 42.39 3.55
2666 2948 6.427150 ACTGCAAAAACGTCTTACATTAGTG 58.573 36.000 0.00 0.00 0.00 2.74
2667 2949 6.613755 ACTGCAAAAACGTCTTACATTAGT 57.386 33.333 0.00 0.00 0.00 2.24
2668 2950 7.129622 TGAACTGCAAAAACGTCTTACATTAG 58.870 34.615 0.00 0.00 0.00 1.73
2669 2951 7.017498 TGAACTGCAAAAACGTCTTACATTA 57.983 32.000 0.00 0.00 0.00 1.90
2670 2952 5.885881 TGAACTGCAAAAACGTCTTACATT 58.114 33.333 0.00 0.00 0.00 2.71
2671 2953 5.493133 TGAACTGCAAAAACGTCTTACAT 57.507 34.783 0.00 0.00 0.00 2.29
2672 2954 4.948608 TGAACTGCAAAAACGTCTTACA 57.051 36.364 0.00 0.00 0.00 2.41
2720 3002 9.784531 GGTATTACATACTACCTCTGTACACTA 57.215 37.037 0.00 0.00 35.51 2.74
2721 3003 8.501070 AGGTATTACATACTACCTCTGTACACT 58.499 37.037 2.84 0.00 43.36 3.55
2722 3004 8.566260 CAGGTATTACATACTACCTCTGTACAC 58.434 40.741 5.26 0.00 44.68 2.90
2723 3005 8.496916 TCAGGTATTACATACTACCTCTGTACA 58.503 37.037 5.26 0.00 44.68 2.90
2724 3006 8.915057 TCAGGTATTACATACTACCTCTGTAC 57.085 38.462 5.26 0.00 44.68 2.90
2725 3007 9.925545 TTTCAGGTATTACATACTACCTCTGTA 57.074 33.333 5.26 0.00 44.68 2.74
2726 3008 8.693625 GTTTCAGGTATTACATACTACCTCTGT 58.306 37.037 5.26 0.00 44.68 3.41
2727 3009 8.915036 AGTTTCAGGTATTACATACTACCTCTG 58.085 37.037 5.26 0.00 44.68 3.35
2730 3012 8.858094 GCTAGTTTCAGGTATTACATACTACCT 58.142 37.037 2.84 2.84 46.87 3.08
2731 3013 8.636213 TGCTAGTTTCAGGTATTACATACTACC 58.364 37.037 0.00 0.00 38.13 3.18
2732 3014 9.460906 GTGCTAGTTTCAGGTATTACATACTAC 57.539 37.037 0.00 0.00 36.04 2.73
2733 3015 9.417561 AGTGCTAGTTTCAGGTATTACATACTA 57.582 33.333 0.00 0.00 36.04 1.82
2734 3016 8.307582 AGTGCTAGTTTCAGGTATTACATACT 57.692 34.615 0.00 0.00 36.04 2.12
2735 3017 8.414778 AGAGTGCTAGTTTCAGGTATTACATAC 58.585 37.037 0.00 0.00 35.00 2.39
2779 3062 9.967451 TCAAGTAGAATGAACCATTTACCATAA 57.033 29.630 0.00 0.00 33.90 1.90
2804 3088 6.593382 AGCCTCGCATATATTTGAAGATCTTC 59.407 38.462 25.68 25.68 39.91 2.87
2807 3091 7.221838 GTCTAGCCTCGCATATATTTGAAGATC 59.778 40.741 0.00 0.00 0.00 2.75
2879 3171 9.396022 GGTTCAAATCATACTTTCTGGAATAGA 57.604 33.333 0.00 0.00 0.00 1.98
2880 3172 9.177608 TGGTTCAAATCATACTTTCTGGAATAG 57.822 33.333 0.00 0.00 0.00 1.73
2896 3188 8.394121 TGTTTTTAAAGCACAATGGTTCAAATC 58.606 29.630 0.90 0.00 37.04 2.17
2930 3223 0.321919 TCCCATTGAGAGCACAGTGC 60.322 55.000 18.55 18.55 45.46 4.40
2933 3226 2.486472 AAGTCCCATTGAGAGCACAG 57.514 50.000 0.00 0.00 0.00 3.66
2935 3228 4.439289 GCAATAAAGTCCCATTGAGAGCAC 60.439 45.833 0.00 0.00 34.69 4.40
2940 3233 6.211515 GCATAAGCAATAAAGTCCCATTGAG 58.788 40.000 0.00 0.00 41.58 3.02
2968 3264 9.376075 CTATGCCATGGAGTTCTATTTATGTAG 57.624 37.037 18.40 0.00 0.00 2.74
2974 3270 7.961326 AAAACTATGCCATGGAGTTCTATTT 57.039 32.000 18.40 4.91 32.27 1.40
2976 3272 9.289782 GATAAAAACTATGCCATGGAGTTCTAT 57.710 33.333 18.40 15.16 32.27 1.98
2986 3282 7.807977 ATCAGAACGATAAAAACTATGCCAT 57.192 32.000 0.00 0.00 30.32 4.40
2987 3283 7.225931 GGTATCAGAACGATAAAAACTATGCCA 59.774 37.037 0.00 0.00 38.35 4.92
2988 3284 7.441458 AGGTATCAGAACGATAAAAACTATGCC 59.559 37.037 0.00 0.00 38.35 4.40
3031 3335 7.172532 AGCTTAATCGTGTATTTCTGTTGTCAA 59.827 33.333 0.00 0.00 0.00 3.18
3044 3348 7.262772 ACTTAATGCTACAGCTTAATCGTGTA 58.737 34.615 2.44 0.00 42.66 2.90
3048 3352 5.904080 GCAACTTAATGCTACAGCTTAATCG 59.096 40.000 2.44 0.00 43.06 3.34
3064 3368 3.515562 ACAAATCATGGGGGCAACTTAA 58.484 40.909 0.00 0.00 0.00 1.85
3072 3376 5.942236 CACTCAGATATACAAATCATGGGGG 59.058 44.000 0.00 0.00 0.00 5.40
3111 3500 2.158813 TGCAAGCAGTATAACCTAGGCC 60.159 50.000 9.30 0.00 0.00 5.19
3144 3533 8.262227 ACGTGAATTAATCAGATAGGTGGTTTA 58.738 33.333 0.00 0.00 39.19 2.01
3161 3550 7.830201 ACCACCCTGAAATAAATACGTGAATTA 59.170 33.333 0.00 0.00 0.00 1.40
3165 3554 5.168647 ACCACCCTGAAATAAATACGTGA 57.831 39.130 0.00 0.00 0.00 4.35
3168 3557 5.184287 ACCAAACCACCCTGAAATAAATACG 59.816 40.000 0.00 0.00 0.00 3.06
3169 3558 6.394809 CACCAAACCACCCTGAAATAAATAC 58.605 40.000 0.00 0.00 0.00 1.89
3175 3564 1.047801 GCACCAAACCACCCTGAAAT 58.952 50.000 0.00 0.00 0.00 2.17
3304 3694 0.034337 CAGCTGGGTGCAAGCAAAAT 59.966 50.000 5.57 0.00 45.94 1.82
3325 3715 1.534729 GACATGAACTTGGGGTGTCC 58.465 55.000 0.00 0.00 34.58 4.02
3576 3966 3.007398 AGAGACCTTGCTACTTTGGTGAG 59.993 47.826 0.00 0.00 32.30 3.51
3628 4018 6.072286 GCAACTTCTGATGAATCTTCTTCCAA 60.072 38.462 0.00 0.00 32.21 3.53
3679 4069 0.036952 CTTCAGGCTTCCGCTTCTCA 60.037 55.000 0.00 0.00 36.09 3.27
3751 4142 6.605146 AGCTGAGCTTTTCGTTGAGGATCA 62.605 45.833 0.00 0.00 38.90 2.92
3798 4190 3.525609 TCATATTTGCAACTACCAGGGGA 59.474 43.478 0.00 0.00 0.00 4.81
3896 4296 2.424246 ACAAACAAACCCCGTACAACAG 59.576 45.455 0.00 0.00 0.00 3.16
3951 4353 1.068588 TCAATCCGTATCCAGCCTTCG 59.931 52.381 0.00 0.00 0.00 3.79
4035 4453 5.593909 CCTTTTTCCCCTTTGAAGCAAAAAT 59.406 36.000 0.00 0.00 32.75 1.82
4057 4475 3.768757 CACCAGAAGTTCTCTCATCTCCT 59.231 47.826 1.26 0.00 29.07 3.69
4080 4500 0.898320 TTGAGCTCCTCCTGTACTGC 59.102 55.000 12.15 0.00 0.00 4.40
4257 6119 4.166888 TCAGCTGGGATCAGGCGC 62.167 66.667 15.13 0.00 41.19 6.53
4350 6216 5.729883 CGTTGTCTTGATAGAATTTCGCAAG 59.270 40.000 16.63 16.63 37.79 4.01
4351 6217 5.390461 CCGTTGTCTTGATAGAATTTCGCAA 60.390 40.000 0.00 0.00 30.65 4.85
4363 6229 1.741770 GCGCTCCCGTTGTCTTGAT 60.742 57.895 0.00 0.00 36.67 2.57
4379 6246 3.192230 TATGGTTCTTGCGGCGCG 61.192 61.111 28.09 14.27 0.00 6.86
4457 6324 2.925306 GCTCAAGCTGCCATTCAACAAG 60.925 50.000 0.00 0.00 38.21 3.16
4475 6342 1.517475 GAGAAGGTTCGGCTCGCTC 60.517 63.158 0.00 0.00 0.00 5.03
4525 6392 3.181440 TGAGTTTCTCCACCTGCTTGATT 60.181 43.478 0.00 0.00 0.00 2.57
4538 6406 3.875134 TGTTCGTTTTCCCTGAGTTTCTC 59.125 43.478 0.00 0.00 0.00 2.87
4585 6453 3.562609 GGAAATTGGTTACAGGCCCTGTA 60.563 47.826 19.72 19.72 43.46 2.74
4591 6459 2.433436 AGACGGAAATTGGTTACAGGC 58.567 47.619 0.00 0.00 0.00 4.85
4601 6469 2.037511 TGGTGACGGTAAGACGGAAATT 59.962 45.455 0.00 0.00 38.39 1.82
4619 6487 1.141881 GTCGATGATGAGCGGTGGT 59.858 57.895 0.00 0.00 0.00 4.16
4622 6490 0.179100 CCTTGTCGATGATGAGCGGT 60.179 55.000 0.00 0.00 0.00 5.68


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.