Multiple sequence alignment - TraesCS2D01G547800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G547800 chr2D 100.000 3407 0 0 1 3407 624055166 624051760 0.000000e+00 6292.0
1 TraesCS2D01G547800 chr2D 94.105 1408 81 2 1014 2420 623947750 623949156 0.000000e+00 2139.0
2 TraesCS2D01G547800 chr2B 93.382 1919 89 15 976 2866 765792960 765791052 0.000000e+00 2806.0
3 TraesCS2D01G547800 chr2B 93.357 1430 91 2 981 2407 765586434 765587862 0.000000e+00 2111.0
4 TraesCS2D01G547800 chr2B 90.886 395 31 2 585 974 765793433 765793039 3.010000e-145 525.0
5 TraesCS2D01G547800 chr2B 79.730 148 16 8 339 472 262908053 262907906 1.010000e-15 95.3
6 TraesCS2D01G547800 chr2A 93.378 1797 103 12 627 2420 755341280 755339497 0.000000e+00 2645.0
7 TraesCS2D01G547800 chr2A 93.283 1444 90 5 981 2420 755118501 755119941 0.000000e+00 2122.0
8 TraesCS2D01G547800 chr5D 83.906 1193 154 26 1129 2305 238670466 238669296 0.000000e+00 1105.0
9 TraesCS2D01G547800 chr5D 97.426 544 14 0 2864 3407 469096736 469096193 0.000000e+00 928.0
10 TraesCS2D01G547800 chr4A 87.373 982 101 14 985 1949 677272518 677273493 0.000000e+00 1105.0
11 TraesCS2D01G547800 chr4A 95.082 61 2 1 336 395 717727403 717727463 1.010000e-15 95.3
12 TraesCS2D01G547800 chr7A 83.793 1197 157 27 1129 2305 262852442 262853621 0.000000e+00 1101.0
13 TraesCS2D01G547800 chr7B 83.641 1192 156 29 1129 2299 222553191 222554364 0.000000e+00 1085.0
14 TraesCS2D01G547800 chr7B 86.667 90 9 3 2863 2950 23332011 23331923 2.800000e-16 97.1
15 TraesCS2D01G547800 chr7B 85.057 87 11 2 342 426 743820086 743820000 1.680000e-13 87.9
16 TraesCS2D01G547800 chr1B 91.360 544 47 0 2864 3407 229496121 229496664 0.000000e+00 745.0
17 TraesCS2D01G547800 chr1B 91.009 545 49 0 2863 3407 675364733 675365277 0.000000e+00 736.0
18 TraesCS2D01G547800 chr1B 84.706 85 8 4 342 426 298091289 298091368 2.820000e-11 80.5
19 TraesCS2D01G547800 chr6B 91.376 545 41 4 2863 3407 559535330 559534792 0.000000e+00 741.0
20 TraesCS2D01G547800 chr7D 83.378 740 94 18 1583 2305 246388398 246389125 0.000000e+00 658.0
21 TraesCS2D01G547800 chr7D 86.538 104 10 4 2864 2965 8745381 8745280 9.990000e-21 111.0
22 TraesCS2D01G547800 chr7D 86.111 108 8 7 324 426 1249889 1249784 3.590000e-20 110.0
23 TraesCS2D01G547800 chr7D 90.361 83 8 0 140 222 457193479 457193561 3.590000e-20 110.0
24 TraesCS2D01G547800 chr7D 79.739 153 16 9 335 472 403146586 403146738 2.800000e-16 97.1
25 TraesCS2D01G547800 chr5B 88.147 464 52 2 1 461 18353639 18353176 1.790000e-152 549.0
26 TraesCS2D01G547800 chr5A 88.479 434 50 0 2873 3306 96979139 96978706 3.010000e-145 525.0
27 TraesCS2D01G547800 chr4D 84.348 115 14 4 470 581 456041147 456041034 3.590000e-20 110.0
28 TraesCS2D01G547800 chr4D 82.759 87 11 4 342 426 418520332 418520248 1.310000e-09 75.0
29 TraesCS2D01G547800 chrUn 83.051 118 14 6 469 582 26522963 26523078 6.010000e-18 102.0
30 TraesCS2D01G547800 chr1A 84.615 91 12 2 2861 2950 587706837 587706748 4.680000e-14 89.8
31 TraesCS2D01G547800 chr3B 86.585 82 6 4 334 411 344666197 344666277 6.060000e-13 86.1
32 TraesCS2D01G547800 chr6A 92.308 52 4 0 375 426 575277826 575277775 1.310000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G547800 chr2D 624051760 624055166 3406 True 6292.0 6292 100.000 1 3407 1 chr2D.!!$R1 3406
1 TraesCS2D01G547800 chr2D 623947750 623949156 1406 False 2139.0 2139 94.105 1014 2420 1 chr2D.!!$F1 1406
2 TraesCS2D01G547800 chr2B 765586434 765587862 1428 False 2111.0 2111 93.357 981 2407 1 chr2B.!!$F1 1426
3 TraesCS2D01G547800 chr2B 765791052 765793433 2381 True 1665.5 2806 92.134 585 2866 2 chr2B.!!$R2 2281
4 TraesCS2D01G547800 chr2A 755339497 755341280 1783 True 2645.0 2645 93.378 627 2420 1 chr2A.!!$R1 1793
5 TraesCS2D01G547800 chr2A 755118501 755119941 1440 False 2122.0 2122 93.283 981 2420 1 chr2A.!!$F1 1439
6 TraesCS2D01G547800 chr5D 238669296 238670466 1170 True 1105.0 1105 83.906 1129 2305 1 chr5D.!!$R1 1176
7 TraesCS2D01G547800 chr5D 469096193 469096736 543 True 928.0 928 97.426 2864 3407 1 chr5D.!!$R2 543
8 TraesCS2D01G547800 chr4A 677272518 677273493 975 False 1105.0 1105 87.373 985 1949 1 chr4A.!!$F1 964
9 TraesCS2D01G547800 chr7A 262852442 262853621 1179 False 1101.0 1101 83.793 1129 2305 1 chr7A.!!$F1 1176
10 TraesCS2D01G547800 chr7B 222553191 222554364 1173 False 1085.0 1085 83.641 1129 2299 1 chr7B.!!$F1 1170
11 TraesCS2D01G547800 chr1B 229496121 229496664 543 False 745.0 745 91.360 2864 3407 1 chr1B.!!$F1 543
12 TraesCS2D01G547800 chr1B 675364733 675365277 544 False 736.0 736 91.009 2863 3407 1 chr1B.!!$F3 544
13 TraesCS2D01G547800 chr6B 559534792 559535330 538 True 741.0 741 91.376 2863 3407 1 chr6B.!!$R1 544
14 TraesCS2D01G547800 chr7D 246388398 246389125 727 False 658.0 658 83.378 1583 2305 1 chr7D.!!$F1 722

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
419 420 0.029577 TGTGGGCCCCATCTACCATA 60.030 55.0 22.27 0.0 35.28 2.74 F
551 552 0.031585 GTTTTGTTGGACGGAAGCCC 59.968 55.0 0.00 0.0 0.00 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2120 2242 0.179134 ACTGTAGCGATCGCACTTCC 60.179 55.0 38.60 21.65 44.88 3.46 R
2479 2610 2.498078 ACTCCTAGCTAGGTTCACTTGC 59.502 50.0 33.84 0.00 46.40 4.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.508840 CTTCGCCAACATCCGCCC 61.509 66.667 0.00 0.00 0.00 6.13
20 21 4.169696 CGCCAACATCCGCCCCTA 62.170 66.667 0.00 0.00 0.00 3.53
21 22 2.516225 GCCAACATCCGCCCCTAC 60.516 66.667 0.00 0.00 0.00 3.18
22 23 2.192175 CCAACATCCGCCCCTACC 59.808 66.667 0.00 0.00 0.00 3.18
23 24 2.675242 CCAACATCCGCCCCTACCA 61.675 63.158 0.00 0.00 0.00 3.25
24 25 1.153168 CAACATCCGCCCCTACCAG 60.153 63.158 0.00 0.00 0.00 4.00
25 26 3.043999 AACATCCGCCCCTACCAGC 62.044 63.158 0.00 0.00 0.00 4.85
26 27 3.164269 CATCCGCCCCTACCAGCT 61.164 66.667 0.00 0.00 0.00 4.24
27 28 2.844839 ATCCGCCCCTACCAGCTC 60.845 66.667 0.00 0.00 0.00 4.09
33 34 4.208686 CCCTACCAGCTCGCGGAC 62.209 72.222 6.13 0.00 0.00 4.79
34 35 4.554363 CCTACCAGCTCGCGGACG 62.554 72.222 6.13 0.00 42.01 4.79
53 54 3.482783 GTTCGCGCACCTCTGCTC 61.483 66.667 8.75 0.00 41.77 4.26
60 61 4.154347 CACCTCTGCTCGGCCCTC 62.154 72.222 0.00 0.00 0.00 4.30
80 81 3.737702 GAGGCTCCCTCTCTATCGT 57.262 57.895 2.15 0.00 46.41 3.73
81 82 1.530323 GAGGCTCCCTCTCTATCGTC 58.470 60.000 2.15 0.00 46.41 4.20
82 83 1.073284 GAGGCTCCCTCTCTATCGTCT 59.927 57.143 2.15 0.00 46.41 4.18
83 84 1.202879 AGGCTCCCTCTCTATCGTCTG 60.203 57.143 0.00 0.00 0.00 3.51
84 85 0.596082 GCTCCCTCTCTATCGTCTGC 59.404 60.000 0.00 0.00 0.00 4.26
85 86 1.243902 CTCCCTCTCTATCGTCTGCC 58.756 60.000 0.00 0.00 0.00 4.85
86 87 0.551396 TCCCTCTCTATCGTCTGCCA 59.449 55.000 0.00 0.00 0.00 4.92
87 88 0.671251 CCCTCTCTATCGTCTGCCAC 59.329 60.000 0.00 0.00 0.00 5.01
88 89 1.686355 CCTCTCTATCGTCTGCCACT 58.314 55.000 0.00 0.00 0.00 4.00
89 90 1.336440 CCTCTCTATCGTCTGCCACTG 59.664 57.143 0.00 0.00 0.00 3.66
90 91 0.741326 TCTCTATCGTCTGCCACTGC 59.259 55.000 0.00 0.00 38.26 4.40
91 92 0.593518 CTCTATCGTCTGCCACTGCG 60.594 60.000 0.00 0.00 41.78 5.18
92 93 1.139734 CTATCGTCTGCCACTGCGT 59.860 57.895 0.00 0.00 41.78 5.24
93 94 0.458543 CTATCGTCTGCCACTGCGTT 60.459 55.000 0.00 0.00 41.78 4.84
94 95 0.457853 TATCGTCTGCCACTGCGTTC 60.458 55.000 0.00 0.00 41.78 3.95
95 96 3.414700 CGTCTGCCACTGCGTTCC 61.415 66.667 0.00 0.00 41.78 3.62
96 97 3.050275 GTCTGCCACTGCGTTCCC 61.050 66.667 0.00 0.00 41.78 3.97
97 98 3.241530 TCTGCCACTGCGTTCCCT 61.242 61.111 0.00 0.00 41.78 4.20
98 99 2.743928 CTGCCACTGCGTTCCCTC 60.744 66.667 0.00 0.00 41.78 4.30
99 100 3.535629 CTGCCACTGCGTTCCCTCA 62.536 63.158 0.00 0.00 41.78 3.86
100 101 3.050275 GCCACTGCGTTCCCTCAC 61.050 66.667 0.00 0.00 0.00 3.51
101 102 2.358737 CCACTGCGTTCCCTCACC 60.359 66.667 0.00 0.00 0.00 4.02
102 103 2.738521 CACTGCGTTCCCTCACCG 60.739 66.667 0.00 0.00 0.00 4.94
125 126 2.913887 CGTGACTTCGCGTAGACTC 58.086 57.895 20.14 12.72 44.02 3.36
126 127 0.443088 CGTGACTTCGCGTAGACTCT 59.557 55.000 20.14 0.00 44.02 3.24
127 128 1.787281 CGTGACTTCGCGTAGACTCTG 60.787 57.143 20.14 7.11 44.02 3.35
128 129 0.168348 TGACTTCGCGTAGACTCTGC 59.832 55.000 20.14 2.36 0.00 4.26
134 135 2.946597 CGTAGACTCTGCGCTGCG 60.947 66.667 19.17 19.17 32.50 5.18
135 136 2.485582 GTAGACTCTGCGCTGCGA 59.514 61.111 28.07 10.07 0.00 5.10
136 137 1.585002 GTAGACTCTGCGCTGCGAG 60.585 63.158 28.07 19.10 36.12 5.03
137 138 3.402691 TAGACTCTGCGCTGCGAGC 62.403 63.158 28.07 9.62 38.02 5.03
138 139 4.792648 GACTCTGCGCTGCGAGCT 62.793 66.667 28.07 8.42 39.60 4.09
150 151 4.399395 CGAGCTGCTGGGCTGGAA 62.399 66.667 7.01 0.00 43.20 3.53
151 152 2.438075 GAGCTGCTGGGCTGGAAG 60.438 66.667 7.01 0.00 43.20 3.46
152 153 3.991725 GAGCTGCTGGGCTGGAAGG 62.992 68.421 7.01 0.00 43.20 3.46
176 177 4.069232 CAGGCTCTCGCGGGTTCA 62.069 66.667 5.57 0.00 36.88 3.18
177 178 3.311110 AGGCTCTCGCGGGTTCAA 61.311 61.111 5.57 0.00 36.88 2.69
178 179 2.125106 GGCTCTCGCGGGTTCAAT 60.125 61.111 5.57 0.00 36.88 2.57
179 180 1.745489 GGCTCTCGCGGGTTCAATT 60.745 57.895 5.57 0.00 36.88 2.32
180 181 1.706287 GGCTCTCGCGGGTTCAATTC 61.706 60.000 5.57 0.00 36.88 2.17
181 182 1.999051 CTCTCGCGGGTTCAATTCG 59.001 57.895 5.57 0.00 0.00 3.34
182 183 0.457853 CTCTCGCGGGTTCAATTCGA 60.458 55.000 5.57 0.00 0.00 3.71
183 184 0.457853 TCTCGCGGGTTCAATTCGAG 60.458 55.000 5.57 4.57 45.46 4.04
184 185 1.421410 CTCGCGGGTTCAATTCGAGG 61.421 60.000 6.13 0.00 41.83 4.63
185 186 1.447140 CGCGGGTTCAATTCGAGGA 60.447 57.895 0.00 0.00 0.00 3.71
186 187 1.421410 CGCGGGTTCAATTCGAGGAG 61.421 60.000 0.00 0.00 0.00 3.69
187 188 0.391263 GCGGGTTCAATTCGAGGAGT 60.391 55.000 0.00 0.00 0.00 3.85
188 189 1.944430 GCGGGTTCAATTCGAGGAGTT 60.944 52.381 0.00 0.00 0.00 3.01
189 190 2.423577 CGGGTTCAATTCGAGGAGTTT 58.576 47.619 0.00 0.00 0.00 2.66
190 191 2.159627 CGGGTTCAATTCGAGGAGTTTG 59.840 50.000 0.00 0.00 0.00 2.93
191 192 2.095212 GGGTTCAATTCGAGGAGTTTGC 60.095 50.000 0.00 0.00 0.00 3.68
192 193 2.412847 GGTTCAATTCGAGGAGTTTGCG 60.413 50.000 0.00 0.00 0.00 4.85
193 194 2.448926 TCAATTCGAGGAGTTTGCGA 57.551 45.000 0.00 0.00 0.00 5.10
194 195 2.066262 TCAATTCGAGGAGTTTGCGAC 58.934 47.619 0.00 0.00 33.33 5.19
195 196 1.128692 CAATTCGAGGAGTTTGCGACC 59.871 52.381 0.00 0.00 33.33 4.79
196 197 0.736325 ATTCGAGGAGTTTGCGACCG 60.736 55.000 0.00 0.00 33.33 4.79
197 198 1.798234 TTCGAGGAGTTTGCGACCGA 61.798 55.000 0.00 0.00 33.33 4.69
198 199 1.801913 CGAGGAGTTTGCGACCGAG 60.802 63.158 0.00 0.00 0.00 4.63
199 200 2.048127 AGGAGTTTGCGACCGAGC 60.048 61.111 0.00 0.00 37.71 5.03
200 201 2.048127 GGAGTTTGCGACCGAGCT 60.048 61.111 0.00 0.00 38.13 4.09
201 202 1.214589 GGAGTTTGCGACCGAGCTA 59.785 57.895 0.00 0.00 38.13 3.32
202 203 0.179108 GGAGTTTGCGACCGAGCTAT 60.179 55.000 0.00 0.00 38.13 2.97
203 204 1.641577 GAGTTTGCGACCGAGCTATT 58.358 50.000 0.00 0.00 38.13 1.73
204 205 1.588861 GAGTTTGCGACCGAGCTATTC 59.411 52.381 0.00 0.00 38.13 1.75
205 206 1.067142 AGTTTGCGACCGAGCTATTCA 60.067 47.619 0.00 0.00 38.13 2.57
206 207 1.324736 GTTTGCGACCGAGCTATTCAG 59.675 52.381 0.00 0.00 38.13 3.02
207 208 0.179111 TTGCGACCGAGCTATTCAGG 60.179 55.000 0.00 0.00 38.13 3.86
208 209 1.300233 GCGACCGAGCTATTCAGGG 60.300 63.158 0.00 0.00 0.00 4.45
209 210 1.735376 GCGACCGAGCTATTCAGGGA 61.735 60.000 0.00 0.00 0.00 4.20
210 211 0.312416 CGACCGAGCTATTCAGGGAG 59.688 60.000 0.00 0.00 0.00 4.30
211 212 0.676736 GACCGAGCTATTCAGGGAGG 59.323 60.000 0.00 0.00 0.00 4.30
212 213 1.369321 CCGAGCTATTCAGGGAGGC 59.631 63.158 0.00 0.00 0.00 4.70
213 214 1.369321 CGAGCTATTCAGGGAGGCC 59.631 63.158 0.00 0.00 0.00 5.19
214 215 1.369321 GAGCTATTCAGGGAGGCCG 59.631 63.158 0.00 0.00 0.00 6.13
215 216 1.383248 AGCTATTCAGGGAGGCCGT 60.383 57.895 0.00 0.00 0.00 5.68
216 217 1.227674 GCTATTCAGGGAGGCCGTG 60.228 63.158 0.00 0.00 40.34 4.94
217 218 1.227674 CTATTCAGGGAGGCCGTGC 60.228 63.158 0.00 0.00 39.03 5.34
218 219 1.689233 TATTCAGGGAGGCCGTGCT 60.689 57.895 0.00 0.00 39.03 4.40
219 220 1.686325 TATTCAGGGAGGCCGTGCTC 61.686 60.000 0.00 0.00 39.03 4.26
240 241 4.479993 GATGTGGCTGAGGCGGCT 62.480 66.667 13.09 13.09 39.81 5.52
241 242 4.479993 ATGTGGCTGAGGCGGCTC 62.480 66.667 30.53 30.53 39.81 4.70
255 256 4.021925 GCTCCAGCCTCCGTGGTT 62.022 66.667 0.00 0.00 38.35 3.67
256 257 2.046892 CTCCAGCCTCCGTGGTTG 60.047 66.667 2.36 2.36 45.27 3.77
257 258 4.329545 TCCAGCCTCCGTGGTTGC 62.330 66.667 3.59 0.00 44.47 4.17
258 259 4.641645 CCAGCCTCCGTGGTTGCA 62.642 66.667 3.59 0.00 44.47 4.08
259 260 3.357079 CAGCCTCCGTGGTTGCAC 61.357 66.667 0.00 0.00 40.11 4.57
260 261 4.643387 AGCCTCCGTGGTTGCACC 62.643 66.667 0.00 0.00 39.22 5.01
266 267 4.101790 CGTGGTTGCACCGCCATC 62.102 66.667 11.63 4.42 45.71 3.51
267 268 2.672996 GTGGTTGCACCGCCATCT 60.673 61.111 7.05 0.00 42.80 2.90
268 269 2.359850 TGGTTGCACCGCCATCTC 60.360 61.111 0.00 0.00 42.58 2.75
269 270 3.134127 GGTTGCACCGCCATCTCC 61.134 66.667 0.00 0.00 0.00 3.71
270 271 2.359850 GTTGCACCGCCATCTCCA 60.360 61.111 0.00 0.00 0.00 3.86
271 272 2.046023 TTGCACCGCCATCTCCAG 60.046 61.111 0.00 0.00 0.00 3.86
272 273 2.894257 TTGCACCGCCATCTCCAGT 61.894 57.895 0.00 0.00 0.00 4.00
273 274 2.512515 GCACCGCCATCTCCAGTC 60.513 66.667 0.00 0.00 0.00 3.51
274 275 2.187946 CACCGCCATCTCCAGTCC 59.812 66.667 0.00 0.00 0.00 3.85
275 276 3.083997 ACCGCCATCTCCAGTCCC 61.084 66.667 0.00 0.00 0.00 4.46
276 277 4.227134 CCGCCATCTCCAGTCCCG 62.227 72.222 0.00 0.00 0.00 5.14
277 278 4.227134 CGCCATCTCCAGTCCCGG 62.227 72.222 0.00 0.00 0.00 5.73
278 279 2.764128 GCCATCTCCAGTCCCGGA 60.764 66.667 0.73 0.00 0.00 5.14
279 280 3.095347 GCCATCTCCAGTCCCGGAC 62.095 68.421 9.81 9.81 0.00 4.79
280 281 2.435693 CCATCTCCAGTCCCGGACC 61.436 68.421 14.32 0.00 32.18 4.46
281 282 1.685765 CATCTCCAGTCCCGGACCA 60.686 63.158 14.32 0.00 32.18 4.02
282 283 1.080354 ATCTCCAGTCCCGGACCAA 59.920 57.895 14.32 0.00 32.18 3.67
283 284 1.265454 ATCTCCAGTCCCGGACCAAC 61.265 60.000 14.32 0.00 32.18 3.77
284 285 3.296709 CTCCAGTCCCGGACCAACG 62.297 68.421 14.32 0.74 32.18 4.10
315 316 4.388499 GCGTCGGGGTGTCACCAT 62.388 66.667 23.48 0.00 41.02 3.55
316 317 2.434185 CGTCGGGGTGTCACCATG 60.434 66.667 23.48 14.48 41.02 3.66
317 318 2.046314 GTCGGGGTGTCACCATGG 60.046 66.667 23.48 11.19 41.02 3.66
318 319 2.203862 TCGGGGTGTCACCATGGA 60.204 61.111 23.48 13.56 41.02 3.41
319 320 2.268920 CGGGGTGTCACCATGGAG 59.731 66.667 23.48 11.61 41.02 3.86
320 321 2.677228 GGGGTGTCACCATGGAGG 59.323 66.667 23.48 10.44 41.02 4.30
321 322 1.923395 GGGGTGTCACCATGGAGGA 60.923 63.158 23.48 12.87 41.02 3.71
322 323 1.281925 GGGGTGTCACCATGGAGGAT 61.282 60.000 23.48 0.00 41.02 3.24
323 324 0.625849 GGGTGTCACCATGGAGGATT 59.374 55.000 23.48 0.00 41.02 3.01
324 325 1.408822 GGGTGTCACCATGGAGGATTC 60.409 57.143 23.48 11.67 41.02 2.52
325 326 1.656652 GTGTCACCATGGAGGATTCG 58.343 55.000 21.47 0.00 41.22 3.34
326 327 0.541392 TGTCACCATGGAGGATTCGG 59.459 55.000 21.47 0.00 41.22 4.30
327 328 0.830648 GTCACCATGGAGGATTCGGA 59.169 55.000 21.47 0.00 41.22 4.55
328 329 1.123077 TCACCATGGAGGATTCGGAG 58.877 55.000 21.47 0.00 41.22 4.63
329 330 0.533755 CACCATGGAGGATTCGGAGC 60.534 60.000 21.47 0.00 41.22 4.70
330 331 0.692419 ACCATGGAGGATTCGGAGCT 60.692 55.000 21.47 0.00 41.22 4.09
331 332 0.034616 CCATGGAGGATTCGGAGCTC 59.965 60.000 5.56 4.71 41.22 4.09
332 333 0.755079 CATGGAGGATTCGGAGCTCA 59.245 55.000 17.19 0.00 0.00 4.26
333 334 1.139654 CATGGAGGATTCGGAGCTCAA 59.860 52.381 17.19 1.99 0.00 3.02
334 335 0.826715 TGGAGGATTCGGAGCTCAAG 59.173 55.000 17.19 9.13 0.00 3.02
335 336 0.531753 GGAGGATTCGGAGCTCAAGC 60.532 60.000 17.19 4.68 42.49 4.01
348 349 4.764336 CAAGCGCGGGTGCACATG 62.764 66.667 20.43 11.26 42.97 3.21
362 363 2.455674 CACATGAGGTGTTCGAGGAA 57.544 50.000 0.00 0.00 42.75 3.36
363 364 2.766313 CACATGAGGTGTTCGAGGAAA 58.234 47.619 0.00 0.00 42.75 3.13
364 365 3.338249 CACATGAGGTGTTCGAGGAAAT 58.662 45.455 0.00 0.00 42.75 2.17
365 366 3.125829 CACATGAGGTGTTCGAGGAAATG 59.874 47.826 0.00 0.00 42.75 2.32
366 367 1.808411 TGAGGTGTTCGAGGAAATGC 58.192 50.000 0.00 0.00 0.00 3.56
367 368 1.087501 GAGGTGTTCGAGGAAATGCC 58.912 55.000 0.00 0.00 0.00 4.40
368 369 0.400213 AGGTGTTCGAGGAAATGCCA 59.600 50.000 0.00 0.00 40.02 4.92
369 370 1.202879 AGGTGTTCGAGGAAATGCCAA 60.203 47.619 0.00 0.00 40.02 4.52
370 371 1.611491 GGTGTTCGAGGAAATGCCAAA 59.389 47.619 0.00 0.00 40.02 3.28
371 372 2.351738 GGTGTTCGAGGAAATGCCAAAG 60.352 50.000 0.00 0.00 40.02 2.77
372 373 2.552315 GTGTTCGAGGAAATGCCAAAGA 59.448 45.455 0.00 0.00 40.02 2.52
373 374 3.004315 GTGTTCGAGGAAATGCCAAAGAA 59.996 43.478 0.00 0.00 40.02 2.52
374 375 3.634448 TGTTCGAGGAAATGCCAAAGAAA 59.366 39.130 0.00 0.00 40.02 2.52
375 376 4.229876 GTTCGAGGAAATGCCAAAGAAAG 58.770 43.478 0.00 0.00 40.02 2.62
376 377 3.750371 TCGAGGAAATGCCAAAGAAAGA 58.250 40.909 0.00 0.00 40.02 2.52
377 378 3.753272 TCGAGGAAATGCCAAAGAAAGAG 59.247 43.478 0.00 0.00 40.02 2.85
378 379 3.753272 CGAGGAAATGCCAAAGAAAGAGA 59.247 43.478 0.00 0.00 40.02 3.10
379 380 4.142730 CGAGGAAATGCCAAAGAAAGAGAG 60.143 45.833 0.00 0.00 40.02 3.20
380 381 4.085009 AGGAAATGCCAAAGAAAGAGAGG 58.915 43.478 0.00 0.00 40.02 3.69
381 382 4.082125 GGAAATGCCAAAGAAAGAGAGGA 58.918 43.478 0.00 0.00 36.34 3.71
382 383 4.157472 GGAAATGCCAAAGAAAGAGAGGAG 59.843 45.833 0.00 0.00 36.34 3.69
383 384 2.867109 TGCCAAAGAAAGAGAGGAGG 57.133 50.000 0.00 0.00 0.00 4.30
384 385 2.338809 TGCCAAAGAAAGAGAGGAGGA 58.661 47.619 0.00 0.00 0.00 3.71
385 386 2.304180 TGCCAAAGAAAGAGAGGAGGAG 59.696 50.000 0.00 0.00 0.00 3.69
386 387 2.355615 GCCAAAGAAAGAGAGGAGGAGG 60.356 54.545 0.00 0.00 0.00 4.30
387 388 3.177228 CCAAAGAAAGAGAGGAGGAGGA 58.823 50.000 0.00 0.00 0.00 3.71
388 389 3.584848 CCAAAGAAAGAGAGGAGGAGGAA 59.415 47.826 0.00 0.00 0.00 3.36
389 390 4.323409 CCAAAGAAAGAGAGGAGGAGGAAG 60.323 50.000 0.00 0.00 0.00 3.46
390 391 4.412060 AAGAAAGAGAGGAGGAGGAAGA 57.588 45.455 0.00 0.00 0.00 2.87
391 392 4.412060 AGAAAGAGAGGAGGAGGAAGAA 57.588 45.455 0.00 0.00 0.00 2.52
392 393 4.352893 AGAAAGAGAGGAGGAGGAAGAAG 58.647 47.826 0.00 0.00 0.00 2.85
393 394 4.045334 AGAAAGAGAGGAGGAGGAAGAAGA 59.955 45.833 0.00 0.00 0.00 2.87
394 395 4.412060 AAGAGAGGAGGAGGAAGAAGAA 57.588 45.455 0.00 0.00 0.00 2.52
395 396 4.625225 AGAGAGGAGGAGGAAGAAGAAT 57.375 45.455 0.00 0.00 0.00 2.40
396 397 4.289245 AGAGAGGAGGAGGAAGAAGAATG 58.711 47.826 0.00 0.00 0.00 2.67
397 398 4.016666 AGAGAGGAGGAGGAAGAAGAATGA 60.017 45.833 0.00 0.00 0.00 2.57
398 399 4.030216 AGAGGAGGAGGAAGAAGAATGAC 58.970 47.826 0.00 0.00 0.00 3.06
399 400 2.763448 AGGAGGAGGAAGAAGAATGACG 59.237 50.000 0.00 0.00 0.00 4.35
400 401 2.498078 GGAGGAGGAAGAAGAATGACGT 59.502 50.000 0.00 0.00 0.00 4.34
401 402 3.516615 GAGGAGGAAGAAGAATGACGTG 58.483 50.000 0.00 0.00 0.00 4.49
402 403 2.900546 AGGAGGAAGAAGAATGACGTGT 59.099 45.455 0.00 0.00 0.00 4.49
403 404 2.996621 GGAGGAAGAAGAATGACGTGTG 59.003 50.000 0.00 0.00 0.00 3.82
404 405 2.996621 GAGGAAGAAGAATGACGTGTGG 59.003 50.000 0.00 0.00 0.00 4.17
405 406 2.076863 GGAAGAAGAATGACGTGTGGG 58.923 52.381 0.00 0.00 0.00 4.61
406 407 1.464997 GAAGAAGAATGACGTGTGGGC 59.535 52.381 0.00 0.00 0.00 5.36
407 408 0.321653 AGAAGAATGACGTGTGGGCC 60.322 55.000 0.00 0.00 0.00 5.80
408 409 1.303317 AAGAATGACGTGTGGGCCC 60.303 57.895 17.59 17.59 0.00 5.80
409 410 2.750237 GAATGACGTGTGGGCCCC 60.750 66.667 22.27 11.72 0.00 5.80
410 411 3.561120 GAATGACGTGTGGGCCCCA 62.561 63.158 22.27 14.62 0.00 4.96
411 412 2.837031 GAATGACGTGTGGGCCCCAT 62.837 60.000 22.27 11.57 35.28 4.00
412 413 2.837031 AATGACGTGTGGGCCCCATC 62.837 60.000 22.27 12.52 35.28 3.51
413 414 3.717294 GACGTGTGGGCCCCATCT 61.717 66.667 22.27 5.86 35.28 2.90
414 415 2.285069 ACGTGTGGGCCCCATCTA 60.285 61.111 22.27 0.00 35.28 1.98
415 416 2.189521 CGTGTGGGCCCCATCTAC 59.810 66.667 22.27 11.27 35.28 2.59
416 417 2.595655 GTGTGGGCCCCATCTACC 59.404 66.667 22.27 0.58 35.28 3.18
417 418 2.126142 TGTGGGCCCCATCTACCA 59.874 61.111 22.27 0.00 35.28 3.25
418 419 1.308657 TGTGGGCCCCATCTACCAT 60.309 57.895 22.27 0.00 35.28 3.55
419 420 0.029577 TGTGGGCCCCATCTACCATA 60.030 55.000 22.27 0.00 35.28 2.74
420 421 1.145571 GTGGGCCCCATCTACCATAA 58.854 55.000 22.27 0.00 35.28 1.90
421 422 1.145571 TGGGCCCCATCTACCATAAC 58.854 55.000 22.27 0.00 0.00 1.89
422 423 0.036306 GGGCCCCATCTACCATAACG 59.964 60.000 12.23 0.00 0.00 3.18
423 424 0.036306 GGCCCCATCTACCATAACGG 59.964 60.000 0.00 0.00 42.50 4.44
435 436 2.129607 CCATAACGGTCCGGAATAACG 58.870 52.381 17.28 11.74 0.00 3.18
436 437 2.223782 CCATAACGGTCCGGAATAACGA 60.224 50.000 17.28 4.98 35.47 3.85
437 438 3.446799 CATAACGGTCCGGAATAACGAA 58.553 45.455 17.28 11.57 35.47 3.85
438 439 2.000429 AACGGTCCGGAATAACGAAG 58.000 50.000 17.28 4.65 35.47 3.79
452 453 0.589708 ACGAAGTTAACTTTGCCGCC 59.410 50.000 28.30 12.45 37.78 6.13
453 454 0.589223 CGAAGTTAACTTTGCCGCCA 59.411 50.000 21.40 0.00 36.11 5.69
454 455 1.662026 CGAAGTTAACTTTGCCGCCAC 60.662 52.381 21.40 5.91 36.11 5.01
455 456 0.309612 AAGTTAACTTTGCCGCCACG 59.690 50.000 15.22 0.00 30.82 4.94
456 457 0.816421 AGTTAACTTTGCCGCCACGT 60.816 50.000 1.12 0.00 0.00 4.49
457 458 0.385098 GTTAACTTTGCCGCCACGTC 60.385 55.000 0.00 0.00 0.00 4.34
458 459 0.814410 TTAACTTTGCCGCCACGTCA 60.814 50.000 0.00 0.00 0.00 4.35
459 460 1.225376 TAACTTTGCCGCCACGTCAG 61.225 55.000 0.00 0.00 0.00 3.51
460 461 4.389576 CTTTGCCGCCACGTCAGC 62.390 66.667 0.00 0.00 0.00 4.26
476 477 4.729856 GCGCGACGGGTGGTAGTT 62.730 66.667 12.10 0.00 0.00 2.24
477 478 2.048877 CGCGACGGGTGGTAGTTT 60.049 61.111 0.00 0.00 0.00 2.66
478 479 1.665599 CGCGACGGGTGGTAGTTTT 60.666 57.895 0.00 0.00 0.00 2.43
479 480 1.223417 CGCGACGGGTGGTAGTTTTT 61.223 55.000 0.00 0.00 0.00 1.94
480 481 1.794512 GCGACGGGTGGTAGTTTTTA 58.205 50.000 0.00 0.00 0.00 1.52
481 482 1.728425 GCGACGGGTGGTAGTTTTTAG 59.272 52.381 0.00 0.00 0.00 1.85
482 483 2.867647 GCGACGGGTGGTAGTTTTTAGT 60.868 50.000 0.00 0.00 0.00 2.24
483 484 3.392882 CGACGGGTGGTAGTTTTTAGTT 58.607 45.455 0.00 0.00 0.00 2.24
484 485 4.555262 CGACGGGTGGTAGTTTTTAGTTA 58.445 43.478 0.00 0.00 0.00 2.24
485 486 4.385748 CGACGGGTGGTAGTTTTTAGTTAC 59.614 45.833 0.00 0.00 0.00 2.50
486 487 5.289083 ACGGGTGGTAGTTTTTAGTTACA 57.711 39.130 0.00 0.00 0.00 2.41
487 488 5.679601 ACGGGTGGTAGTTTTTAGTTACAA 58.320 37.500 0.00 0.00 0.00 2.41
488 489 5.759763 ACGGGTGGTAGTTTTTAGTTACAAG 59.240 40.000 0.00 0.00 0.00 3.16
489 490 5.990996 CGGGTGGTAGTTTTTAGTTACAAGA 59.009 40.000 0.00 0.00 0.00 3.02
490 491 6.652062 CGGGTGGTAGTTTTTAGTTACAAGAT 59.348 38.462 0.00 0.00 0.00 2.40
491 492 7.173735 CGGGTGGTAGTTTTTAGTTACAAGATT 59.826 37.037 0.00 0.00 0.00 2.40
492 493 8.509690 GGGTGGTAGTTTTTAGTTACAAGATTC 58.490 37.037 0.00 0.00 0.00 2.52
493 494 9.059260 GGTGGTAGTTTTTAGTTACAAGATTCA 57.941 33.333 0.00 0.00 0.00 2.57
512 513 8.466086 AGATTCAAATTTTGATAGTTTTCGGC 57.534 30.769 12.39 0.00 39.84 5.54
513 514 7.545615 AGATTCAAATTTTGATAGTTTTCGGCC 59.454 33.333 12.39 0.00 39.84 6.13
514 515 6.090483 TCAAATTTTGATAGTTTTCGGCCA 57.910 33.333 7.74 0.00 34.08 5.36
515 516 6.696411 TCAAATTTTGATAGTTTTCGGCCAT 58.304 32.000 7.74 0.00 34.08 4.40
516 517 7.158021 TCAAATTTTGATAGTTTTCGGCCATT 58.842 30.769 7.74 0.00 34.08 3.16
517 518 7.659390 TCAAATTTTGATAGTTTTCGGCCATTT 59.341 29.630 7.74 0.00 34.08 2.32
518 519 7.977789 AATTTTGATAGTTTTCGGCCATTTT 57.022 28.000 2.24 0.00 0.00 1.82
519 520 7.977789 ATTTTGATAGTTTTCGGCCATTTTT 57.022 28.000 2.24 0.00 0.00 1.94
520 521 9.495572 AATTTTGATAGTTTTCGGCCATTTTTA 57.504 25.926 2.24 0.00 0.00 1.52
521 522 8.888579 TTTTGATAGTTTTCGGCCATTTTTAA 57.111 26.923 2.24 0.00 0.00 1.52
522 523 8.888579 TTTGATAGTTTTCGGCCATTTTTAAA 57.111 26.923 2.24 0.00 0.00 1.52
523 524 8.888579 TTGATAGTTTTCGGCCATTTTTAAAA 57.111 26.923 2.24 0.00 0.00 1.52
524 525 8.888579 TGATAGTTTTCGGCCATTTTTAAAAA 57.111 26.923 15.38 15.38 0.00 1.94
525 526 9.495572 TGATAGTTTTCGGCCATTTTTAAAAAT 57.504 25.926 18.40 18.40 39.07 1.82
542 543 9.720769 TTTTAAAAATGTGGTAGTTTTGTTGGA 57.279 25.926 0.00 0.00 37.19 3.53
543 544 8.705048 TTAAAAATGTGGTAGTTTTGTTGGAC 57.295 30.769 0.00 0.00 37.19 4.02
544 545 4.561735 AATGTGGTAGTTTTGTTGGACG 57.438 40.909 0.00 0.00 0.00 4.79
545 546 2.290464 TGTGGTAGTTTTGTTGGACGG 58.710 47.619 0.00 0.00 0.00 4.79
546 547 2.093075 TGTGGTAGTTTTGTTGGACGGA 60.093 45.455 0.00 0.00 0.00 4.69
547 548 2.944349 GTGGTAGTTTTGTTGGACGGAA 59.056 45.455 0.00 0.00 0.00 4.30
548 549 3.002965 GTGGTAGTTTTGTTGGACGGAAG 59.997 47.826 0.00 0.00 0.00 3.46
549 550 2.031420 GGTAGTTTTGTTGGACGGAAGC 60.031 50.000 0.00 0.00 0.00 3.86
550 551 1.029681 AGTTTTGTTGGACGGAAGCC 58.970 50.000 0.00 0.00 0.00 4.35
551 552 0.031585 GTTTTGTTGGACGGAAGCCC 59.968 55.000 0.00 0.00 0.00 5.19
552 553 1.110518 TTTTGTTGGACGGAAGCCCC 61.111 55.000 0.00 0.00 29.41 5.80
553 554 2.285889 TTTGTTGGACGGAAGCCCCA 62.286 55.000 0.00 0.00 35.69 4.96
554 555 2.114411 GTTGGACGGAAGCCCCAA 59.886 61.111 0.00 0.00 42.36 4.12
555 556 1.304134 GTTGGACGGAAGCCCCAAT 60.304 57.895 0.00 0.00 44.88 3.16
556 557 0.898326 GTTGGACGGAAGCCCCAATT 60.898 55.000 0.00 0.00 44.88 2.32
557 558 0.699399 TTGGACGGAAGCCCCAATTA 59.301 50.000 0.00 0.00 40.61 1.40
558 559 0.923358 TGGACGGAAGCCCCAATTAT 59.077 50.000 0.00 0.00 34.77 1.28
559 560 1.318576 GGACGGAAGCCCCAATTATG 58.681 55.000 0.00 0.00 34.14 1.90
560 561 1.133915 GGACGGAAGCCCCAATTATGA 60.134 52.381 0.00 0.00 34.14 2.15
561 562 2.489073 GGACGGAAGCCCCAATTATGAT 60.489 50.000 0.00 0.00 34.14 2.45
562 563 3.244770 GGACGGAAGCCCCAATTATGATA 60.245 47.826 0.00 0.00 34.14 2.15
563 564 4.003648 GACGGAAGCCCCAATTATGATAG 58.996 47.826 0.00 0.00 34.14 2.08
564 565 3.394606 ACGGAAGCCCCAATTATGATAGT 59.605 43.478 0.00 0.00 34.14 2.12
565 566 4.141251 ACGGAAGCCCCAATTATGATAGTT 60.141 41.667 0.00 0.00 34.14 2.24
566 567 4.827284 CGGAAGCCCCAATTATGATAGTTT 59.173 41.667 0.00 0.00 34.14 2.66
567 568 5.301805 CGGAAGCCCCAATTATGATAGTTTT 59.698 40.000 0.00 0.00 34.14 2.43
568 569 6.183360 CGGAAGCCCCAATTATGATAGTTTTT 60.183 38.462 0.00 0.00 34.14 1.94
596 597 9.651718 GTCAAACAGTCAACATTTTCTAGTTAG 57.348 33.333 0.00 0.00 0.00 2.34
663 664 0.938008 GGCTGCTAGTTTGCGATACC 59.062 55.000 0.00 0.00 35.36 2.73
681 682 1.428370 CCACGCGGTACATGGTGATG 61.428 60.000 12.47 0.00 35.49 3.07
718 719 3.065925 GGTCTCGTACGGCATACTAGTTT 59.934 47.826 16.52 0.00 30.35 2.66
737 738 1.296715 GGACTTCGGACCAGTGCAT 59.703 57.895 0.00 0.00 33.03 3.96
811 812 0.736636 CAGTATGCGTCTCCACCGTA 59.263 55.000 0.00 0.00 0.00 4.02
859 860 0.899720 CAAACTACCTCCCTGCCGTA 59.100 55.000 0.00 0.00 0.00 4.02
884 885 1.078759 CTCGCCCACGTCAATCAGAC 61.079 60.000 0.00 0.00 44.02 3.51
889 890 1.447838 CACGTCAATCAGACCCCGG 60.448 63.158 0.00 0.00 44.66 5.73
901 902 4.065281 CCCCGGTCACGACTCCAC 62.065 72.222 0.00 0.00 44.60 4.02
904 905 4.039357 CGGTCACGACTCCACGCT 62.039 66.667 0.00 0.00 44.60 5.07
906 907 3.106407 GTCACGACTCCACGCTGC 61.106 66.667 0.00 0.00 36.70 5.25
928 929 3.181499 CGACGACCAGGCCAGTATATATC 60.181 52.174 5.01 0.00 0.00 1.63
930 931 3.510360 ACGACCAGGCCAGTATATATCAC 59.490 47.826 5.01 0.00 0.00 3.06
933 934 4.239495 ACCAGGCCAGTATATATCACCAA 58.761 43.478 5.01 0.00 0.00 3.67
934 935 4.041691 ACCAGGCCAGTATATATCACCAAC 59.958 45.833 5.01 0.00 0.00 3.77
935 936 4.565652 CCAGGCCAGTATATATCACCAACC 60.566 50.000 5.01 0.00 0.00 3.77
936 937 3.260884 AGGCCAGTATATATCACCAACCG 59.739 47.826 5.01 0.00 0.00 4.44
937 938 3.259876 GGCCAGTATATATCACCAACCGA 59.740 47.826 0.00 0.00 0.00 4.69
938 939 4.243270 GCCAGTATATATCACCAACCGAC 58.757 47.826 0.00 0.00 0.00 4.79
939 940 4.262292 GCCAGTATATATCACCAACCGACA 60.262 45.833 0.00 0.00 0.00 4.35
940 941 5.227908 CCAGTATATATCACCAACCGACAC 58.772 45.833 0.00 0.00 0.00 3.67
945 946 1.125093 ATCACCAACCGACACCCAGA 61.125 55.000 0.00 0.00 0.00 3.86
947 948 2.067605 ACCAACCGACACCCAGACA 61.068 57.895 0.00 0.00 0.00 3.41
951 965 1.333619 CAACCGACACCCAGACAAAAG 59.666 52.381 0.00 0.00 0.00 2.27
974 988 2.546368 CCAAAACCACAAGTCGATCGAA 59.454 45.455 21.31 0.71 0.00 3.71
1509 1606 3.535629 CTGCTGGGCGTTCTCCACA 62.536 63.158 0.00 0.00 0.00 4.17
2476 2607 7.550906 GTCCTGATAATGTAGCAGTCTTTCTTT 59.449 37.037 0.39 0.00 40.43 2.52
2477 2608 8.103305 TCCTGATAATGTAGCAGTCTTTCTTTT 58.897 33.333 0.39 0.00 40.43 2.27
2478 2609 8.734386 CCTGATAATGTAGCAGTCTTTCTTTTT 58.266 33.333 0.39 0.00 40.43 1.94
2479 2610 9.552114 CTGATAATGTAGCAGTCTTTCTTTTTG 57.448 33.333 0.00 0.00 37.42 2.44
2480 2611 8.023128 TGATAATGTAGCAGTCTTTCTTTTTGC 58.977 33.333 0.00 0.00 35.09 3.68
2481 2612 5.772825 ATGTAGCAGTCTTTCTTTTTGCA 57.227 34.783 0.00 0.00 37.24 4.08
2482 2613 5.574891 TGTAGCAGTCTTTCTTTTTGCAA 57.425 34.783 0.00 0.00 37.24 4.08
2483 2614 5.581605 TGTAGCAGTCTTTCTTTTTGCAAG 58.418 37.500 0.00 0.00 37.24 4.01
2484 2615 4.725790 AGCAGTCTTTCTTTTTGCAAGT 57.274 36.364 0.00 0.00 37.24 3.16
2485 2616 4.427312 AGCAGTCTTTCTTTTTGCAAGTG 58.573 39.130 0.00 0.00 37.24 3.16
2486 2617 4.158394 AGCAGTCTTTCTTTTTGCAAGTGA 59.842 37.500 0.00 0.00 37.24 3.41
2487 2618 4.864247 GCAGTCTTTCTTTTTGCAAGTGAA 59.136 37.500 0.00 3.13 34.99 3.18
2488 2619 5.220284 GCAGTCTTTCTTTTTGCAAGTGAAC 60.220 40.000 0.00 0.00 34.99 3.18
2489 2620 5.289434 CAGTCTTTCTTTTTGCAAGTGAACC 59.711 40.000 0.00 0.00 0.00 3.62
2490 2621 5.185828 AGTCTTTCTTTTTGCAAGTGAACCT 59.814 36.000 0.00 0.26 0.00 3.50
2491 2622 6.377146 AGTCTTTCTTTTTGCAAGTGAACCTA 59.623 34.615 0.00 0.00 0.00 3.08
2492 2623 6.693113 GTCTTTCTTTTTGCAAGTGAACCTAG 59.307 38.462 0.00 1.58 0.00 3.02
2493 2624 4.568152 TCTTTTTGCAAGTGAACCTAGC 57.432 40.909 0.00 0.00 0.00 3.42
2494 2625 4.207165 TCTTTTTGCAAGTGAACCTAGCT 58.793 39.130 0.00 0.00 0.00 3.32
2495 2626 5.373222 TCTTTTTGCAAGTGAACCTAGCTA 58.627 37.500 0.00 0.00 0.00 3.32
2601 2732 5.175859 ACGTTTGTTGATCTATCGGTTGAT 58.824 37.500 0.00 0.00 38.67 2.57
2652 2802 1.817609 CGGTCACCGTTGTTTCAAAC 58.182 50.000 8.54 0.00 42.73 2.93
2656 2806 4.239304 GGTCACCGTTGTTTCAAACTTTT 58.761 39.130 1.10 0.00 0.00 2.27
2706 2856 1.532523 TGCATGACAGCCGATTTTGA 58.467 45.000 0.00 0.00 0.00 2.69
2711 2861 1.606668 TGACAGCCGATTTTGAACACC 59.393 47.619 0.00 0.00 0.00 4.16
2755 2905 5.364778 ACTAGCATAAATGTCCGTGCATTA 58.635 37.500 0.00 0.00 38.03 1.90
2782 2932 3.489416 GGAAAAGAAAATTGGCGTGTGTC 59.511 43.478 0.00 0.00 0.00 3.67
2799 2949 0.671251 GTCCACAAAATTGTCCGCCA 59.329 50.000 0.00 0.00 39.91 5.69
2827 2977 2.550978 ACAACGGCATCAGTATAGTGC 58.449 47.619 2.40 0.00 38.12 4.40
2849 2999 1.279840 GTGACAGCGACAAACAGGC 59.720 57.895 0.00 0.00 0.00 4.85
2861 3011 0.179078 AAACAGGCGTACACCGTGAA 60.179 50.000 5.28 0.00 39.32 3.18
2977 3127 1.078426 AGTCCATACAAGCACCCGC 60.078 57.895 0.00 0.00 38.99 6.13
3067 3217 1.826720 CCTATGCCTTGCAAACCACAT 59.173 47.619 0.00 4.63 43.62 3.21
3308 3458 3.382832 CCCGAAGCGTCCCTGACT 61.383 66.667 0.00 0.00 0.00 3.41
3316 3466 2.363925 GTCCCTGACTACCGCCCT 60.364 66.667 0.00 0.00 0.00 5.19
3345 3495 0.249911 GAAGTAGCTGCCCGGTATGG 60.250 60.000 0.00 0.00 37.55 2.74
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.508840 GGGCGGATGTTGGCGAAG 61.509 66.667 0.00 0.00 0.00 3.79
5 6 2.192175 GGTAGGGGCGGATGTTGG 59.808 66.667 0.00 0.00 0.00 3.77
6 7 1.153168 CTGGTAGGGGCGGATGTTG 60.153 63.158 0.00 0.00 0.00 3.33
7 8 3.043999 GCTGGTAGGGGCGGATGTT 62.044 63.158 0.00 0.00 0.00 2.71
8 9 3.480133 GCTGGTAGGGGCGGATGT 61.480 66.667 0.00 0.00 0.00 3.06
9 10 3.164269 AGCTGGTAGGGGCGGATG 61.164 66.667 0.00 0.00 0.00 3.51
10 11 2.844839 GAGCTGGTAGGGGCGGAT 60.845 66.667 0.00 0.00 0.00 4.18
16 17 4.208686 GTCCGCGAGCTGGTAGGG 62.209 72.222 8.23 4.83 0.00 3.53
17 18 4.554363 CGTCCGCGAGCTGGTAGG 62.554 72.222 8.23 0.00 41.33 3.18
43 44 4.154347 GAGGGCCGAGCAGAGGTG 62.154 72.222 0.00 0.00 0.00 4.00
62 63 1.073284 AGACGATAGAGAGGGAGCCTC 59.927 57.143 0.00 0.00 45.45 4.70
63 64 1.145571 AGACGATAGAGAGGGAGCCT 58.854 55.000 0.00 0.00 41.38 4.58
64 65 1.243902 CAGACGATAGAGAGGGAGCC 58.756 60.000 0.00 0.00 41.38 4.70
65 66 0.596082 GCAGACGATAGAGAGGGAGC 59.404 60.000 0.00 0.00 41.38 4.70
66 67 1.243902 GGCAGACGATAGAGAGGGAG 58.756 60.000 0.00 0.00 41.38 4.30
67 68 0.551396 TGGCAGACGATAGAGAGGGA 59.449 55.000 0.00 0.00 41.38 4.20
68 69 0.671251 GTGGCAGACGATAGAGAGGG 59.329 60.000 0.00 0.00 41.38 4.30
69 70 1.336440 CAGTGGCAGACGATAGAGAGG 59.664 57.143 0.00 0.00 41.38 3.69
70 71 1.268999 GCAGTGGCAGACGATAGAGAG 60.269 57.143 0.00 0.00 40.72 3.20
71 72 0.741326 GCAGTGGCAGACGATAGAGA 59.259 55.000 0.00 0.00 40.72 3.10
72 73 0.593518 CGCAGTGGCAGACGATAGAG 60.594 60.000 0.00 0.00 41.24 2.43
73 74 1.313091 ACGCAGTGGCAGACGATAGA 61.313 55.000 10.27 0.00 42.51 1.98
74 75 0.458543 AACGCAGTGGCAGACGATAG 60.459 55.000 10.27 0.00 45.00 2.08
75 76 0.457853 GAACGCAGTGGCAGACGATA 60.458 55.000 10.27 0.00 45.00 2.92
76 77 1.738099 GAACGCAGTGGCAGACGAT 60.738 57.895 10.27 0.00 45.00 3.73
77 78 2.355837 GAACGCAGTGGCAGACGA 60.356 61.111 10.27 0.00 45.00 4.20
78 79 3.414700 GGAACGCAGTGGCAGACG 61.415 66.667 0.00 0.00 45.00 4.18
79 80 3.050275 GGGAACGCAGTGGCAGAC 61.050 66.667 0.00 0.00 45.00 3.51
80 81 3.240134 GAGGGAACGCAGTGGCAGA 62.240 63.158 0.00 0.00 45.00 4.26
81 82 2.743928 GAGGGAACGCAGTGGCAG 60.744 66.667 0.00 0.00 45.00 4.85
82 83 3.555324 TGAGGGAACGCAGTGGCA 61.555 61.111 0.00 0.00 45.00 4.92
83 84 3.050275 GTGAGGGAACGCAGTGGC 61.050 66.667 0.00 0.00 45.00 5.01
84 85 2.358737 GGTGAGGGAACGCAGTGG 60.359 66.667 0.00 0.00 45.00 4.00
85 86 2.738521 CGGTGAGGGAACGCAGTG 60.739 66.667 0.00 0.00 45.00 3.66
103 104 4.764336 TACGCGAAGTCACGGCGG 62.764 66.667 15.93 0.00 37.22 6.13
104 105 3.238241 CTACGCGAAGTCACGGCG 61.238 66.667 15.93 4.80 38.17 6.46
105 106 2.150837 GTCTACGCGAAGTCACGGC 61.151 63.158 15.93 0.00 0.00 5.68
106 107 0.520827 GAGTCTACGCGAAGTCACGG 60.521 60.000 15.93 0.00 0.00 4.94
107 108 0.443088 AGAGTCTACGCGAAGTCACG 59.557 55.000 15.93 0.00 0.00 4.35
108 109 1.884756 CAGAGTCTACGCGAAGTCAC 58.115 55.000 15.93 1.33 0.00 3.67
109 110 0.168348 GCAGAGTCTACGCGAAGTCA 59.832 55.000 15.93 0.00 0.00 3.41
110 111 2.932906 GCAGAGTCTACGCGAAGTC 58.067 57.895 15.93 10.31 0.00 3.01
117 118 2.946597 CGCAGCGCAGAGTCTACG 60.947 66.667 11.47 8.47 0.00 3.51
118 119 1.585002 CTCGCAGCGCAGAGTCTAC 60.585 63.158 10.87 0.00 0.00 2.59
119 120 2.794621 CTCGCAGCGCAGAGTCTA 59.205 61.111 10.87 0.00 0.00 2.59
120 121 4.792648 GCTCGCAGCGCAGAGTCT 62.793 66.667 22.27 0.00 38.59 3.24
133 134 4.399395 TTCCAGCCCAGCAGCTCG 62.399 66.667 0.00 0.00 42.61 5.03
134 135 2.438075 CTTCCAGCCCAGCAGCTC 60.438 66.667 0.00 0.00 42.61 4.09
135 136 4.044439 CCTTCCAGCCCAGCAGCT 62.044 66.667 0.00 0.00 46.45 4.24
163 164 0.457853 TCGAATTGAACCCGCGAGAG 60.458 55.000 8.23 0.00 0.00 3.20
164 165 1.587568 TCGAATTGAACCCGCGAGA 59.412 52.632 8.23 0.00 0.00 4.04
165 166 1.421410 CCTCGAATTGAACCCGCGAG 61.421 60.000 8.23 0.00 45.67 5.03
166 167 1.447140 CCTCGAATTGAACCCGCGA 60.447 57.895 8.23 0.00 0.00 5.87
167 168 1.421410 CTCCTCGAATTGAACCCGCG 61.421 60.000 0.00 0.00 0.00 6.46
168 169 0.391263 ACTCCTCGAATTGAACCCGC 60.391 55.000 0.00 0.00 0.00 6.13
169 170 2.094762 AACTCCTCGAATTGAACCCG 57.905 50.000 0.00 0.00 0.00 5.28
170 171 2.095212 GCAAACTCCTCGAATTGAACCC 60.095 50.000 0.00 0.00 0.00 4.11
171 172 2.412847 CGCAAACTCCTCGAATTGAACC 60.413 50.000 0.00 0.00 0.00 3.62
172 173 2.478894 TCGCAAACTCCTCGAATTGAAC 59.521 45.455 0.00 0.00 0.00 3.18
173 174 2.478894 GTCGCAAACTCCTCGAATTGAA 59.521 45.455 0.00 0.00 33.81 2.69
174 175 2.066262 GTCGCAAACTCCTCGAATTGA 58.934 47.619 0.00 0.00 33.81 2.57
175 176 1.128692 GGTCGCAAACTCCTCGAATTG 59.871 52.381 0.00 0.00 33.81 2.32
176 177 1.439679 GGTCGCAAACTCCTCGAATT 58.560 50.000 0.00 0.00 33.81 2.17
177 178 0.736325 CGGTCGCAAACTCCTCGAAT 60.736 55.000 0.00 0.00 33.81 3.34
178 179 1.372499 CGGTCGCAAACTCCTCGAA 60.372 57.895 0.00 0.00 33.81 3.71
179 180 2.196382 CTCGGTCGCAAACTCCTCGA 62.196 60.000 0.00 0.00 0.00 4.04
180 181 1.801913 CTCGGTCGCAAACTCCTCG 60.802 63.158 0.00 0.00 0.00 4.63
181 182 2.095252 GCTCGGTCGCAAACTCCTC 61.095 63.158 0.00 0.00 0.00 3.71
182 183 1.248785 TAGCTCGGTCGCAAACTCCT 61.249 55.000 0.00 0.00 0.00 3.69
183 184 0.179108 ATAGCTCGGTCGCAAACTCC 60.179 55.000 0.00 0.00 0.00 3.85
184 185 1.588861 GAATAGCTCGGTCGCAAACTC 59.411 52.381 0.00 0.00 0.00 3.01
185 186 1.067142 TGAATAGCTCGGTCGCAAACT 60.067 47.619 0.00 0.00 0.00 2.66
186 187 1.324736 CTGAATAGCTCGGTCGCAAAC 59.675 52.381 0.00 0.00 0.00 2.93
187 188 1.640428 CTGAATAGCTCGGTCGCAAA 58.360 50.000 0.00 0.00 0.00 3.68
188 189 0.179111 CCTGAATAGCTCGGTCGCAA 60.179 55.000 0.00 0.00 0.00 4.85
189 190 1.437573 CCTGAATAGCTCGGTCGCA 59.562 57.895 0.00 0.00 0.00 5.10
190 191 1.300233 CCCTGAATAGCTCGGTCGC 60.300 63.158 0.00 0.00 0.00 5.19
191 192 0.312416 CTCCCTGAATAGCTCGGTCG 59.688 60.000 0.00 0.00 0.00 4.79
192 193 0.676736 CCTCCCTGAATAGCTCGGTC 59.323 60.000 0.00 0.00 0.00 4.79
193 194 1.403687 GCCTCCCTGAATAGCTCGGT 61.404 60.000 0.00 0.00 0.00 4.69
194 195 1.369321 GCCTCCCTGAATAGCTCGG 59.631 63.158 0.00 0.00 0.00 4.63
195 196 1.369321 GGCCTCCCTGAATAGCTCG 59.631 63.158 0.00 0.00 0.00 5.03
196 197 1.369321 CGGCCTCCCTGAATAGCTC 59.631 63.158 0.00 0.00 0.00 4.09
197 198 1.383248 ACGGCCTCCCTGAATAGCT 60.383 57.895 0.00 0.00 0.00 3.32
198 199 1.227674 CACGGCCTCCCTGAATAGC 60.228 63.158 0.00 0.00 0.00 2.97
199 200 1.227674 GCACGGCCTCCCTGAATAG 60.228 63.158 0.00 0.00 0.00 1.73
200 201 1.686325 GAGCACGGCCTCCCTGAATA 61.686 60.000 0.00 0.00 0.00 1.75
201 202 3.011517 AGCACGGCCTCCCTGAAT 61.012 61.111 0.00 0.00 0.00 2.57
202 203 3.706373 GAGCACGGCCTCCCTGAA 61.706 66.667 0.00 0.00 0.00 3.02
223 224 4.479993 AGCCGCCTCAGCCACATC 62.480 66.667 0.00 0.00 34.57 3.06
224 225 4.479993 GAGCCGCCTCAGCCACAT 62.480 66.667 0.00 0.00 38.03 3.21
238 239 4.021925 AACCACGGAGGCTGGAGC 62.022 66.667 0.00 0.00 43.14 4.70
239 240 2.046892 CAACCACGGAGGCTGGAG 60.047 66.667 0.00 0.00 43.14 3.86
240 241 4.329545 GCAACCACGGAGGCTGGA 62.330 66.667 0.00 0.00 43.14 3.86
241 242 4.641645 TGCAACCACGGAGGCTGG 62.642 66.667 0.00 0.00 43.14 4.85
242 243 3.357079 GTGCAACCACGGAGGCTG 61.357 66.667 0.00 0.00 43.14 4.85
253 254 2.359850 TGGAGATGGCGGTGCAAC 60.360 61.111 0.00 0.00 0.00 4.17
254 255 2.046023 CTGGAGATGGCGGTGCAA 60.046 61.111 0.00 0.00 0.00 4.08
255 256 3.315142 GACTGGAGATGGCGGTGCA 62.315 63.158 0.00 0.00 0.00 4.57
256 257 2.512515 GACTGGAGATGGCGGTGC 60.513 66.667 0.00 0.00 0.00 5.01
257 258 2.187946 GGACTGGAGATGGCGGTG 59.812 66.667 0.00 0.00 0.00 4.94
258 259 3.083997 GGGACTGGAGATGGCGGT 61.084 66.667 0.00 0.00 0.00 5.68
259 260 4.227134 CGGGACTGGAGATGGCGG 62.227 72.222 0.00 0.00 0.00 6.13
260 261 4.227134 CCGGGACTGGAGATGGCG 62.227 72.222 0.00 0.00 0.00 5.69
261 262 2.764128 TCCGGGACTGGAGATGGC 60.764 66.667 0.00 0.00 33.05 4.40
262 263 2.435693 GGTCCGGGACTGGAGATGG 61.436 68.421 25.39 0.00 39.14 3.51
263 264 1.264749 TTGGTCCGGGACTGGAGATG 61.265 60.000 25.39 0.00 39.14 2.90
264 265 1.080354 TTGGTCCGGGACTGGAGAT 59.920 57.895 25.39 0.00 39.14 2.75
265 266 1.911766 GTTGGTCCGGGACTGGAGA 60.912 63.158 25.39 5.87 39.14 3.71
266 267 2.663196 GTTGGTCCGGGACTGGAG 59.337 66.667 25.39 0.00 39.14 3.86
267 268 3.307906 CGTTGGTCCGGGACTGGA 61.308 66.667 25.39 9.91 35.04 3.86
308 309 0.830648 TCCGAATCCTCCATGGTGAC 59.169 55.000 15.47 3.41 37.07 3.67
309 310 1.123077 CTCCGAATCCTCCATGGTGA 58.877 55.000 15.47 11.82 37.07 4.02
310 311 0.533755 GCTCCGAATCCTCCATGGTG 60.534 60.000 12.58 9.53 37.07 4.17
311 312 0.692419 AGCTCCGAATCCTCCATGGT 60.692 55.000 12.58 0.00 37.07 3.55
312 313 0.034616 GAGCTCCGAATCCTCCATGG 59.965 60.000 4.97 4.97 37.10 3.66
313 314 0.755079 TGAGCTCCGAATCCTCCATG 59.245 55.000 12.15 0.00 0.00 3.66
314 315 1.415659 CTTGAGCTCCGAATCCTCCAT 59.584 52.381 12.15 0.00 0.00 3.41
315 316 0.826715 CTTGAGCTCCGAATCCTCCA 59.173 55.000 12.15 0.00 0.00 3.86
316 317 0.531753 GCTTGAGCTCCGAATCCTCC 60.532 60.000 12.15 0.00 38.21 4.30
317 318 0.873743 CGCTTGAGCTCCGAATCCTC 60.874 60.000 12.15 0.00 39.32 3.71
318 319 1.142748 CGCTTGAGCTCCGAATCCT 59.857 57.895 12.15 0.00 39.32 3.24
319 320 2.529619 GCGCTTGAGCTCCGAATCC 61.530 63.158 12.15 0.00 39.32 3.01
320 321 2.864931 CGCGCTTGAGCTCCGAATC 61.865 63.158 12.15 0.00 39.32 2.52
321 322 2.887568 CGCGCTTGAGCTCCGAAT 60.888 61.111 12.15 0.00 39.32 3.34
336 337 3.434319 CACCTCATGTGCACCCGC 61.434 66.667 15.69 0.00 38.34 6.13
344 345 3.338249 CATTTCCTCGAACACCTCATGT 58.662 45.455 0.00 0.00 46.42 3.21
345 346 2.096496 GCATTTCCTCGAACACCTCATG 59.904 50.000 0.00 0.00 0.00 3.07
346 347 2.359900 GCATTTCCTCGAACACCTCAT 58.640 47.619 0.00 0.00 0.00 2.90
347 348 1.610624 GGCATTTCCTCGAACACCTCA 60.611 52.381 0.00 0.00 0.00 3.86
348 349 1.087501 GGCATTTCCTCGAACACCTC 58.912 55.000 0.00 0.00 0.00 3.85
349 350 0.400213 TGGCATTTCCTCGAACACCT 59.600 50.000 0.00 0.00 35.26 4.00
350 351 1.243902 TTGGCATTTCCTCGAACACC 58.756 50.000 0.00 0.00 35.26 4.16
351 352 2.552315 TCTTTGGCATTTCCTCGAACAC 59.448 45.455 0.00 0.00 35.26 3.32
352 353 2.857483 TCTTTGGCATTTCCTCGAACA 58.143 42.857 0.00 0.00 35.26 3.18
353 354 3.915437 TTCTTTGGCATTTCCTCGAAC 57.085 42.857 0.00 0.00 35.26 3.95
354 355 4.141287 TCTTTCTTTGGCATTTCCTCGAA 58.859 39.130 0.00 0.00 35.26 3.71
355 356 3.750371 TCTTTCTTTGGCATTTCCTCGA 58.250 40.909 0.00 0.00 35.26 4.04
356 357 3.753272 TCTCTTTCTTTGGCATTTCCTCG 59.247 43.478 0.00 0.00 35.26 4.63
357 358 4.157472 CCTCTCTTTCTTTGGCATTTCCTC 59.843 45.833 0.00 0.00 35.26 3.71
358 359 4.085009 CCTCTCTTTCTTTGGCATTTCCT 58.915 43.478 0.00 0.00 35.26 3.36
359 360 4.082125 TCCTCTCTTTCTTTGGCATTTCC 58.918 43.478 0.00 0.00 0.00 3.13
360 361 4.157472 CCTCCTCTCTTTCTTTGGCATTTC 59.843 45.833 0.00 0.00 0.00 2.17
361 362 4.085009 CCTCCTCTCTTTCTTTGGCATTT 58.915 43.478 0.00 0.00 0.00 2.32
362 363 3.331889 TCCTCCTCTCTTTCTTTGGCATT 59.668 43.478 0.00 0.00 0.00 3.56
363 364 2.915604 TCCTCCTCTCTTTCTTTGGCAT 59.084 45.455 0.00 0.00 0.00 4.40
364 365 2.304180 CTCCTCCTCTCTTTCTTTGGCA 59.696 50.000 0.00 0.00 0.00 4.92
365 366 2.355615 CCTCCTCCTCTCTTTCTTTGGC 60.356 54.545 0.00 0.00 0.00 4.52
366 367 3.177228 TCCTCCTCCTCTCTTTCTTTGG 58.823 50.000 0.00 0.00 0.00 3.28
367 368 4.530161 TCTTCCTCCTCCTCTCTTTCTTTG 59.470 45.833 0.00 0.00 0.00 2.77
368 369 4.757692 TCTTCCTCCTCCTCTCTTTCTTT 58.242 43.478 0.00 0.00 0.00 2.52
369 370 4.412060 TCTTCCTCCTCCTCTCTTTCTT 57.588 45.455 0.00 0.00 0.00 2.52
370 371 4.045334 TCTTCTTCCTCCTCCTCTCTTTCT 59.955 45.833 0.00 0.00 0.00 2.52
371 372 4.349365 TCTTCTTCCTCCTCCTCTCTTTC 58.651 47.826 0.00 0.00 0.00 2.62
372 373 4.412060 TCTTCTTCCTCCTCCTCTCTTT 57.588 45.455 0.00 0.00 0.00 2.52
373 374 4.412060 TTCTTCTTCCTCCTCCTCTCTT 57.588 45.455 0.00 0.00 0.00 2.85
374 375 4.016666 TCATTCTTCTTCCTCCTCCTCTCT 60.017 45.833 0.00 0.00 0.00 3.10
375 376 4.099419 GTCATTCTTCTTCCTCCTCCTCTC 59.901 50.000 0.00 0.00 0.00 3.20
376 377 4.030216 GTCATTCTTCTTCCTCCTCCTCT 58.970 47.826 0.00 0.00 0.00 3.69
377 378 3.181480 CGTCATTCTTCTTCCTCCTCCTC 60.181 52.174 0.00 0.00 0.00 3.71
378 379 2.763448 CGTCATTCTTCTTCCTCCTCCT 59.237 50.000 0.00 0.00 0.00 3.69
379 380 2.498078 ACGTCATTCTTCTTCCTCCTCC 59.502 50.000 0.00 0.00 0.00 4.30
380 381 3.056465 ACACGTCATTCTTCTTCCTCCTC 60.056 47.826 0.00 0.00 0.00 3.71
381 382 2.900546 ACACGTCATTCTTCTTCCTCCT 59.099 45.455 0.00 0.00 0.00 3.69
382 383 2.996621 CACACGTCATTCTTCTTCCTCC 59.003 50.000 0.00 0.00 0.00 4.30
383 384 2.996621 CCACACGTCATTCTTCTTCCTC 59.003 50.000 0.00 0.00 0.00 3.71
384 385 2.289694 CCCACACGTCATTCTTCTTCCT 60.290 50.000 0.00 0.00 0.00 3.36
385 386 2.076863 CCCACACGTCATTCTTCTTCC 58.923 52.381 0.00 0.00 0.00 3.46
386 387 1.464997 GCCCACACGTCATTCTTCTTC 59.535 52.381 0.00 0.00 0.00 2.87
387 388 1.523758 GCCCACACGTCATTCTTCTT 58.476 50.000 0.00 0.00 0.00 2.52
388 389 0.321653 GGCCCACACGTCATTCTTCT 60.322 55.000 0.00 0.00 0.00 2.85
389 390 1.305930 GGGCCCACACGTCATTCTTC 61.306 60.000 19.95 0.00 0.00 2.87
390 391 1.303317 GGGCCCACACGTCATTCTT 60.303 57.895 19.95 0.00 0.00 2.52
391 392 2.351276 GGGCCCACACGTCATTCT 59.649 61.111 19.95 0.00 0.00 2.40
392 393 2.750237 GGGGCCCACACGTCATTC 60.750 66.667 26.86 0.00 0.00 2.67
393 394 2.837031 GATGGGGCCCACACGTCATT 62.837 60.000 31.54 9.61 35.80 2.57
394 395 3.338250 ATGGGGCCCACACGTCAT 61.338 61.111 31.54 13.93 35.80 3.06
395 396 4.028490 GATGGGGCCCACACGTCA 62.028 66.667 31.54 11.89 35.80 4.35
396 397 2.363975 TAGATGGGGCCCACACGTC 61.364 63.158 31.54 21.99 35.80 4.34
397 398 2.285069 TAGATGGGGCCCACACGT 60.285 61.111 31.54 12.94 35.80 4.49
398 399 2.189521 GTAGATGGGGCCCACACG 59.810 66.667 31.54 0.00 35.80 4.49
399 400 1.645402 ATGGTAGATGGGGCCCACAC 61.645 60.000 31.54 24.65 35.80 3.82
400 401 0.029577 TATGGTAGATGGGGCCCACA 60.030 55.000 31.54 21.83 35.80 4.17
401 402 1.145571 TTATGGTAGATGGGGCCCAC 58.854 55.000 31.54 21.59 35.80 4.61
402 403 1.145571 GTTATGGTAGATGGGGCCCA 58.854 55.000 30.97 30.97 38.19 5.36
403 404 0.036306 CGTTATGGTAGATGGGGCCC 59.964 60.000 18.17 18.17 0.00 5.80
404 405 0.036306 CCGTTATGGTAGATGGGGCC 59.964 60.000 0.00 0.00 0.00 5.80
405 406 3.625745 CCGTTATGGTAGATGGGGC 57.374 57.895 0.00 0.00 0.00 5.80
415 416 2.129607 CGTTATTCCGGACCGTTATGG 58.870 52.381 13.94 0.00 46.41 2.74
416 417 3.082698 TCGTTATTCCGGACCGTTATG 57.917 47.619 13.94 0.00 0.00 1.90
417 418 3.131046 ACTTCGTTATTCCGGACCGTTAT 59.869 43.478 13.94 8.10 0.00 1.89
418 419 2.491693 ACTTCGTTATTCCGGACCGTTA 59.508 45.455 13.94 0.00 0.00 3.18
419 420 1.273327 ACTTCGTTATTCCGGACCGTT 59.727 47.619 13.94 0.00 0.00 4.44
420 421 0.890683 ACTTCGTTATTCCGGACCGT 59.109 50.000 13.94 0.00 0.00 4.83
421 422 2.000429 AACTTCGTTATTCCGGACCG 58.000 50.000 1.83 6.99 0.00 4.79
422 423 4.498241 AGTTAACTTCGTTATTCCGGACC 58.502 43.478 1.83 0.00 0.00 4.46
423 424 6.301861 CAAAGTTAACTTCGTTATTCCGGAC 58.698 40.000 20.78 0.00 34.61 4.79
424 425 5.106987 GCAAAGTTAACTTCGTTATTCCGGA 60.107 40.000 20.78 0.00 34.61 5.14
425 426 5.084055 GCAAAGTTAACTTCGTTATTCCGG 58.916 41.667 20.78 0.00 34.61 5.14
426 427 5.084055 GGCAAAGTTAACTTCGTTATTCCG 58.916 41.667 20.78 3.59 34.61 4.30
427 428 5.084055 CGGCAAAGTTAACTTCGTTATTCC 58.916 41.667 20.78 8.23 34.61 3.01
428 429 4.552276 GCGGCAAAGTTAACTTCGTTATTC 59.448 41.667 20.78 4.49 34.61 1.75
429 430 4.469552 GCGGCAAAGTTAACTTCGTTATT 58.530 39.130 20.78 1.74 34.61 1.40
430 431 3.120095 GGCGGCAAAGTTAACTTCGTTAT 60.120 43.478 20.78 2.48 34.61 1.89
431 432 2.223845 GGCGGCAAAGTTAACTTCGTTA 59.776 45.455 20.78 0.00 34.61 3.18
432 433 1.002142 GGCGGCAAAGTTAACTTCGTT 60.002 47.619 20.78 3.25 34.61 3.85
433 434 0.589708 GGCGGCAAAGTTAACTTCGT 59.410 50.000 20.78 4.00 34.61 3.85
434 435 0.589223 TGGCGGCAAAGTTAACTTCG 59.411 50.000 20.78 19.47 34.61 3.79
435 436 1.662026 CGTGGCGGCAAAGTTAACTTC 60.662 52.381 20.78 9.62 34.61 3.01
436 437 0.309612 CGTGGCGGCAAAGTTAACTT 59.690 50.000 15.50 15.22 37.91 2.66
437 438 0.816421 ACGTGGCGGCAAAGTTAACT 60.816 50.000 15.50 1.12 0.00 2.24
438 439 0.385098 GACGTGGCGGCAAAGTTAAC 60.385 55.000 15.50 0.00 33.63 2.01
439 440 0.814410 TGACGTGGCGGCAAAGTTAA 60.814 50.000 15.50 7.12 44.01 2.01
440 441 1.227586 TGACGTGGCGGCAAAGTTA 60.228 52.632 15.50 11.27 44.01 2.24
441 442 2.515057 TGACGTGGCGGCAAAGTT 60.515 55.556 15.50 0.00 44.01 2.66
459 460 4.729856 AACTACCACCCGTCGCGC 62.730 66.667 0.00 0.00 0.00 6.86
460 461 1.223417 AAAAACTACCACCCGTCGCG 61.223 55.000 0.00 0.00 0.00 5.87
461 462 1.728425 CTAAAAACTACCACCCGTCGC 59.272 52.381 0.00 0.00 0.00 5.19
462 463 3.030668 ACTAAAAACTACCACCCGTCG 57.969 47.619 0.00 0.00 0.00 5.12
463 464 5.296748 TGTAACTAAAAACTACCACCCGTC 58.703 41.667 0.00 0.00 0.00 4.79
464 465 5.289083 TGTAACTAAAAACTACCACCCGT 57.711 39.130 0.00 0.00 0.00 5.28
465 466 5.990996 TCTTGTAACTAAAAACTACCACCCG 59.009 40.000 0.00 0.00 0.00 5.28
466 467 7.991084 ATCTTGTAACTAAAAACTACCACCC 57.009 36.000 0.00 0.00 0.00 4.61
467 468 9.059260 TGAATCTTGTAACTAAAAACTACCACC 57.941 33.333 0.00 0.00 0.00 4.61
486 487 8.925700 GCCGAAAACTATCAAAATTTGAATCTT 58.074 29.630 12.75 0.00 43.95 2.40
487 488 7.545615 GGCCGAAAACTATCAAAATTTGAATCT 59.454 33.333 12.75 0.00 43.95 2.40
488 489 7.330700 TGGCCGAAAACTATCAAAATTTGAATC 59.669 33.333 12.75 4.30 43.95 2.52
489 490 7.158021 TGGCCGAAAACTATCAAAATTTGAAT 58.842 30.769 12.75 4.52 43.95 2.57
490 491 6.516718 TGGCCGAAAACTATCAAAATTTGAA 58.483 32.000 12.75 2.06 43.95 2.69
491 492 6.090483 TGGCCGAAAACTATCAAAATTTGA 57.910 33.333 11.10 11.10 45.01 2.69
492 493 6.966435 ATGGCCGAAAACTATCAAAATTTG 57.034 33.333 0.00 0.00 0.00 2.32
493 494 7.977789 AAATGGCCGAAAACTATCAAAATTT 57.022 28.000 0.00 0.00 0.00 1.82
494 495 7.977789 AAAATGGCCGAAAACTATCAAAATT 57.022 28.000 0.00 0.00 0.00 1.82
495 496 7.977789 AAAAATGGCCGAAAACTATCAAAAT 57.022 28.000 0.00 0.00 0.00 1.82
496 497 8.888579 TTAAAAATGGCCGAAAACTATCAAAA 57.111 26.923 0.00 0.00 0.00 2.44
497 498 8.888579 TTTAAAAATGGCCGAAAACTATCAAA 57.111 26.923 0.00 0.00 0.00 2.69
498 499 8.888579 TTTTAAAAATGGCCGAAAACTATCAA 57.111 26.923 0.00 0.00 0.00 2.57
499 500 8.888579 TTTTTAAAAATGGCCGAAAACTATCA 57.111 26.923 9.31 0.00 0.00 2.15
516 517 9.720769 TCCAACAAAACTACCACATTTTTAAAA 57.279 25.926 0.00 0.00 0.00 1.52
517 518 9.152595 GTCCAACAAAACTACCACATTTTTAAA 57.847 29.630 0.00 0.00 0.00 1.52
518 519 7.488471 CGTCCAACAAAACTACCACATTTTTAA 59.512 33.333 0.00 0.00 0.00 1.52
519 520 6.973474 CGTCCAACAAAACTACCACATTTTTA 59.027 34.615 0.00 0.00 0.00 1.52
520 521 5.808030 CGTCCAACAAAACTACCACATTTTT 59.192 36.000 0.00 0.00 0.00 1.94
521 522 5.344884 CGTCCAACAAAACTACCACATTTT 58.655 37.500 0.00 0.00 0.00 1.82
522 523 4.202070 CCGTCCAACAAAACTACCACATTT 60.202 41.667 0.00 0.00 0.00 2.32
523 524 3.316868 CCGTCCAACAAAACTACCACATT 59.683 43.478 0.00 0.00 0.00 2.71
524 525 2.882137 CCGTCCAACAAAACTACCACAT 59.118 45.455 0.00 0.00 0.00 3.21
525 526 2.093075 TCCGTCCAACAAAACTACCACA 60.093 45.455 0.00 0.00 0.00 4.17
526 527 2.563702 TCCGTCCAACAAAACTACCAC 58.436 47.619 0.00 0.00 0.00 4.16
527 528 3.207778 CTTCCGTCCAACAAAACTACCA 58.792 45.455 0.00 0.00 0.00 3.25
528 529 2.031420 GCTTCCGTCCAACAAAACTACC 60.031 50.000 0.00 0.00 0.00 3.18
529 530 2.031420 GGCTTCCGTCCAACAAAACTAC 60.031 50.000 0.00 0.00 0.00 2.73
530 531 2.223745 GGCTTCCGTCCAACAAAACTA 58.776 47.619 0.00 0.00 0.00 2.24
531 532 1.029681 GGCTTCCGTCCAACAAAACT 58.970 50.000 0.00 0.00 0.00 2.66
532 533 0.031585 GGGCTTCCGTCCAACAAAAC 59.968 55.000 0.00 0.00 34.11 2.43
533 534 1.110518 GGGGCTTCCGTCCAACAAAA 61.111 55.000 0.00 0.00 36.31 2.44
534 535 1.529713 GGGGCTTCCGTCCAACAAA 60.530 57.895 0.00 0.00 36.31 2.83
535 536 2.114411 GGGGCTTCCGTCCAACAA 59.886 61.111 0.00 0.00 36.31 2.83
536 537 2.075355 ATTGGGGCTTCCGTCCAACA 62.075 55.000 0.00 0.00 42.48 3.33
537 538 0.898326 AATTGGGGCTTCCGTCCAAC 60.898 55.000 0.00 0.00 42.48 3.77
538 539 0.699399 TAATTGGGGCTTCCGTCCAA 59.301 50.000 0.00 0.00 43.62 3.53
539 540 0.923358 ATAATTGGGGCTTCCGTCCA 59.077 50.000 0.00 0.00 36.31 4.02
540 541 1.133915 TCATAATTGGGGCTTCCGTCC 60.134 52.381 0.00 0.00 38.76 4.79
541 542 2.341846 TCATAATTGGGGCTTCCGTC 57.658 50.000 0.00 0.00 38.76 4.79
542 543 3.394606 ACTATCATAATTGGGGCTTCCGT 59.605 43.478 0.00 0.00 38.76 4.69
543 544 4.021102 ACTATCATAATTGGGGCTTCCG 57.979 45.455 0.00 0.00 38.76 4.30
544 545 6.731292 AAAACTATCATAATTGGGGCTTCC 57.269 37.500 0.00 0.00 0.00 3.46
565 566 8.600449 AGAAAATGTTGACTGTTTGACAAAAA 57.400 26.923 1.27 0.00 32.74 1.94
566 567 9.352784 CTAGAAAATGTTGACTGTTTGACAAAA 57.647 29.630 1.27 0.00 32.74 2.44
567 568 8.519526 ACTAGAAAATGTTGACTGTTTGACAAA 58.480 29.630 0.00 0.00 32.74 2.83
568 569 8.050778 ACTAGAAAATGTTGACTGTTTGACAA 57.949 30.769 0.00 0.00 0.00 3.18
569 570 7.624360 ACTAGAAAATGTTGACTGTTTGACA 57.376 32.000 0.00 0.00 0.00 3.58
570 571 9.651718 CTAACTAGAAAATGTTGACTGTTTGAC 57.348 33.333 0.00 0.00 0.00 3.18
571 572 8.836413 CCTAACTAGAAAATGTTGACTGTTTGA 58.164 33.333 0.00 0.00 0.00 2.69
572 573 8.621286 ACCTAACTAGAAAATGTTGACTGTTTG 58.379 33.333 0.00 0.00 0.00 2.93
573 574 8.747538 ACCTAACTAGAAAATGTTGACTGTTT 57.252 30.769 0.00 0.00 0.00 2.83
574 575 8.621286 CAACCTAACTAGAAAATGTTGACTGTT 58.379 33.333 0.00 0.00 34.95 3.16
575 576 7.773690 ACAACCTAACTAGAAAATGTTGACTGT 59.226 33.333 17.26 0.00 36.15 3.55
576 577 8.154649 ACAACCTAACTAGAAAATGTTGACTG 57.845 34.615 17.26 0.85 36.15 3.51
577 578 9.841295 TTACAACCTAACTAGAAAATGTTGACT 57.159 29.630 17.26 0.00 36.15 3.41
578 579 9.874215 GTTACAACCTAACTAGAAAATGTTGAC 57.126 33.333 17.26 7.73 36.15 3.18
579 580 9.059260 GGTTACAACCTAACTAGAAAATGTTGA 57.941 33.333 17.26 5.30 45.75 3.18
614 615 5.009310 ACGTCTTTGGTTCAGGAAATAAACC 59.991 40.000 0.00 0.00 42.28 3.27
663 664 2.005995 CATCACCATGTACCGCGTG 58.994 57.895 4.92 0.00 0.00 5.34
681 682 4.681978 ACCAACTGCGGTCGGAGC 62.682 66.667 10.38 0.00 37.05 4.70
718 719 1.480212 ATGCACTGGTCCGAAGTCCA 61.480 55.000 0.00 0.00 0.00 4.02
768 769 3.498927 ACTTTGACGTGGTACGATAGG 57.501 47.619 8.48 0.00 46.05 2.57
811 812 2.350057 TCGATTCGACCTCAGATCCT 57.650 50.000 4.29 0.00 0.00 3.24
859 860 3.823330 GACGTGGGCGAGACCGAT 61.823 66.667 0.00 0.00 40.62 4.18
884 885 4.065281 GTGGAGTCGTGACCGGGG 62.065 72.222 6.32 0.00 33.95 5.73
889 890 3.106407 GCAGCGTGGAGTCGTGAC 61.106 66.667 0.00 0.00 0.00 3.67
906 907 0.959553 ATATACTGGCCTGGTCGTCG 59.040 55.000 14.82 0.00 0.00 5.12
916 917 4.243270 GTCGGTTGGTGATATATACTGGC 58.757 47.826 0.00 0.00 0.00 4.85
928 929 1.597027 GTCTGGGTGTCGGTTGGTG 60.597 63.158 0.00 0.00 0.00 4.17
930 931 0.464735 TTTGTCTGGGTGTCGGTTGG 60.465 55.000 0.00 0.00 0.00 3.77
933 934 0.544697 ACTTTTGTCTGGGTGTCGGT 59.455 50.000 0.00 0.00 0.00 4.69
934 935 1.226746 GACTTTTGTCTGGGTGTCGG 58.773 55.000 0.00 0.00 45.55 4.79
945 946 4.617298 CGACTTGTGGTTTTGGACTTTTGT 60.617 41.667 0.00 0.00 0.00 2.83
947 948 3.759618 TCGACTTGTGGTTTTGGACTTTT 59.240 39.130 0.00 0.00 0.00 2.27
951 965 2.096417 CGATCGACTTGTGGTTTTGGAC 60.096 50.000 10.26 0.00 0.00 4.02
974 988 4.814294 CGGCGCTCGGCTTAGGTT 62.814 66.667 7.64 0.00 42.94 3.50
1365 1462 4.090057 GCGTTGCGACTCTTGCCC 62.090 66.667 1.84 0.00 0.00 5.36
1407 1504 4.166011 GGCAGCACGTCATTCGCC 62.166 66.667 0.00 0.00 44.19 5.54
1410 1507 4.166011 GCCGGCAGCACGTCATTC 62.166 66.667 24.80 0.00 42.97 2.67
2120 2242 0.179134 ACTGTAGCGATCGCACTTCC 60.179 55.000 38.60 21.65 44.88 3.46
2438 2560 6.842163 ACATTATCAGGACAATCGAACAAAC 58.158 36.000 0.00 0.00 0.00 2.93
2479 2610 2.498078 ACTCCTAGCTAGGTTCACTTGC 59.502 50.000 33.84 0.00 46.40 4.01
2480 2611 3.764434 TGACTCCTAGCTAGGTTCACTTG 59.236 47.826 33.84 19.38 44.02 3.16
2481 2612 4.048970 TGACTCCTAGCTAGGTTCACTT 57.951 45.455 33.84 15.93 44.02 3.16
2482 2613 3.741245 TGACTCCTAGCTAGGTTCACT 57.259 47.619 33.84 15.97 44.02 3.41
2483 2614 4.160626 ACAATGACTCCTAGCTAGGTTCAC 59.839 45.833 31.97 24.09 44.02 3.18
2484 2615 4.353777 ACAATGACTCCTAGCTAGGTTCA 58.646 43.478 31.67 31.67 44.02 3.18
2485 2616 5.360144 TGTACAATGACTCCTAGCTAGGTTC 59.640 44.000 33.84 29.10 44.02 3.62
2486 2617 5.269991 TGTACAATGACTCCTAGCTAGGTT 58.730 41.667 33.84 23.91 44.02 3.50
2487 2618 4.868268 TGTACAATGACTCCTAGCTAGGT 58.132 43.478 33.84 19.78 44.02 3.08
2488 2619 6.490381 TGTATGTACAATGACTCCTAGCTAGG 59.510 42.308 30.94 30.94 37.79 3.02
2489 2620 7.511959 TGTATGTACAATGACTCCTAGCTAG 57.488 40.000 14.20 14.20 32.40 3.42
2490 2621 9.011095 GTATGTATGTACAATGACTCCTAGCTA 57.989 37.037 0.00 0.00 39.99 3.32
2491 2622 6.985653 ATGTATGTACAATGACTCCTAGCT 57.014 37.500 0.00 0.00 39.99 3.32
2492 2623 7.658261 TGTATGTATGTACAATGACTCCTAGC 58.342 38.462 0.00 0.00 39.99 3.42
2601 2732 8.264347 TCACTTGAAAACTAGGTCATGCATATA 58.736 33.333 0.00 0.00 0.00 0.86
2652 2802 2.827322 TGTGATCCCAAGCATCCAAAAG 59.173 45.455 0.00 0.00 0.00 2.27
2656 2806 0.994247 ACTGTGATCCCAAGCATCCA 59.006 50.000 0.00 0.00 0.00 3.41
2726 2876 6.036735 GCACGGACATTTATGCTAGTTTCTTA 59.963 38.462 0.00 0.00 35.16 2.10
2755 2905 4.920927 CACGCCAATTTTCTTTTCCGTTAT 59.079 37.500 0.00 0.00 0.00 1.89
2782 2932 2.491693 ACTATGGCGGACAATTTTGTGG 59.508 45.455 0.00 0.00 42.43 4.17
2799 2949 2.500098 ACTGATGCCGTTGTACCACTAT 59.500 45.455 0.00 0.00 0.00 2.12
2827 2977 1.275657 GTTTGTCGCTGTCACGTGG 59.724 57.895 17.00 0.08 0.00 4.94
2831 2981 1.279840 GCCTGTTTGTCGCTGTCAC 59.720 57.895 0.00 0.00 0.00 3.67
3067 3217 7.780064 TGAAGACATCAAATTCCAGTTGAAAA 58.220 30.769 0.00 0.00 38.44 2.29
3316 3466 1.984570 AGCTACTTCTGCGGCTGGA 60.985 57.895 7.03 0.00 33.50 3.86
3345 3495 2.671896 ATCAATCTTGATGGGGCCTC 57.328 50.000 0.84 0.00 45.63 4.70


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.