Multiple sequence alignment - TraesCS2D01G547400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G547400 chr2D 100.000 3932 0 0 1 3932 623894271 623898202 0.000000e+00 7262
1 TraesCS2D01G547400 chr2D 90.522 939 80 6 978 1913 623910845 623911777 0.000000e+00 1232
2 TraesCS2D01G547400 chr2D 88.704 903 97 5 1000 1898 623958499 623957598 0.000000e+00 1098
3 TraesCS2D01G547400 chr2D 85.804 951 107 14 2142 3073 623913804 623914745 0.000000e+00 983
4 TraesCS2D01G547400 chr2B 87.900 3281 264 62 63 3243 765571204 765574451 0.000000e+00 3736
5 TraesCS2D01G547400 chr2B 91.226 946 72 8 972 1913 765580181 765581119 0.000000e+00 1277
6 TraesCS2D01G547400 chr2B 88.203 907 107 0 997 1903 753829994 753829088 0.000000e+00 1083
7 TraesCS2D01G547400 chr2B 91.622 370 28 3 3561 3929 765576842 765577209 3.510000e-140 508
8 TraesCS2D01G547400 chr2B 87.413 286 12 8 3284 3566 765574548 765574812 1.370000e-79 307
9 TraesCS2D01G547400 chr2A 89.590 1172 90 15 2142 3282 755087465 755088635 0.000000e+00 1459
10 TraesCS2D01G547400 chr2A 89.906 961 84 10 958 1909 755251720 755250764 0.000000e+00 1225
11 TraesCS2D01G547400 chr2A 90.942 828 56 14 637 1460 755078355 755079167 0.000000e+00 1096
12 TraesCS2D01G547400 chr2A 88.235 918 103 4 996 1912 748078214 748079127 0.000000e+00 1092
13 TraesCS2D01G547400 chr2A 88.242 910 100 5 1000 1905 755177510 755176604 0.000000e+00 1081
14 TraesCS2D01G547400 chr2A 86.589 947 108 7 2156 3087 755247618 755246676 0.000000e+00 1027
15 TraesCS2D01G547400 chr2A 84.232 983 125 12 2143 3110 755114520 755115487 0.000000e+00 929
16 TraesCS2D01G547400 chr2A 87.711 651 69 8 3284 3929 755088679 755089323 0.000000e+00 749
17 TraesCS2D01G547400 chr7D 89.270 1109 98 9 2152 3242 534620831 534619726 0.000000e+00 1369
18 TraesCS2D01G547400 chr7D 91.438 946 70 9 973 1913 534473081 534472142 0.000000e+00 1288
19 TraesCS2D01G547400 chr7D 88.385 904 85 7 2184 3073 534520771 534519874 0.000000e+00 1070
20 TraesCS2D01G547400 chr7D 85.414 953 115 13 2157 3094 534468991 534468048 0.000000e+00 968
21 TraesCS2D01G547400 chr7D 85.745 933 107 10 2157 3073 534370641 534369719 0.000000e+00 963
22 TraesCS2D01G547400 chr7D 83.774 1060 106 34 289 1290 534625309 534624258 0.000000e+00 944
23 TraesCS2D01G547400 chr7D 85.954 655 67 14 3284 3932 534496831 534496196 0.000000e+00 676
24 TraesCS2D01G547400 chr7D 79.734 602 68 34 3293 3883 534619620 534619062 1.710000e-103 387
25 TraesCS2D01G547400 chr7D 89.714 175 14 3 3071 3243 534497100 534496928 1.840000e-53 220


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G547400 chr2D 623894271 623898202 3931 False 7262.0 7262 100.000000 1 3932 1 chr2D.!!$F1 3931
1 TraesCS2D01G547400 chr2D 623910845 623914745 3900 False 1107.5 1232 88.163000 978 3073 2 chr2D.!!$F2 2095
2 TraesCS2D01G547400 chr2D 623957598 623958499 901 True 1098.0 1098 88.704000 1000 1898 1 chr2D.!!$R1 898
3 TraesCS2D01G547400 chr2B 765571204 765581119 9915 False 1457.0 3736 89.540250 63 3929 4 chr2B.!!$F1 3866
4 TraesCS2D01G547400 chr2B 753829088 753829994 906 True 1083.0 1083 88.203000 997 1903 1 chr2B.!!$R1 906
5 TraesCS2D01G547400 chr2A 755246676 755251720 5044 True 1126.0 1225 88.247500 958 3087 2 chr2A.!!$R2 2129
6 TraesCS2D01G547400 chr2A 755087465 755089323 1858 False 1104.0 1459 88.650500 2142 3929 2 chr2A.!!$F4 1787
7 TraesCS2D01G547400 chr2A 755078355 755079167 812 False 1096.0 1096 90.942000 637 1460 1 chr2A.!!$F2 823
8 TraesCS2D01G547400 chr2A 748078214 748079127 913 False 1092.0 1092 88.235000 996 1912 1 chr2A.!!$F1 916
9 TraesCS2D01G547400 chr2A 755176604 755177510 906 True 1081.0 1081 88.242000 1000 1905 1 chr2A.!!$R1 905
10 TraesCS2D01G547400 chr2A 755114520 755115487 967 False 929.0 929 84.232000 2143 3110 1 chr2A.!!$F3 967
11 TraesCS2D01G547400 chr7D 534468048 534473081 5033 True 1128.0 1288 88.426000 973 3094 2 chr7D.!!$R3 2121
12 TraesCS2D01G547400 chr7D 534519874 534520771 897 True 1070.0 1070 88.385000 2184 3073 1 chr7D.!!$R2 889
13 TraesCS2D01G547400 chr7D 534369719 534370641 922 True 963.0 963 85.745000 2157 3073 1 chr7D.!!$R1 916
14 TraesCS2D01G547400 chr7D 534619062 534625309 6247 True 900.0 1369 84.259333 289 3883 3 chr7D.!!$R5 3594
15 TraesCS2D01G547400 chr7D 534496196 534497100 904 True 448.0 676 87.834000 3071 3932 2 chr7D.!!$R4 861

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
256 257 0.390603 TGGACTGTGTAATTCGGCGG 60.391 55.000 7.21 0.0 0.00 6.13 F
261 262 0.892755 TGTGTAATTCGGCGGAGACT 59.107 50.000 7.21 0.0 0.00 3.24 F
1641 1721 1.077501 CACGGCCATCATGGAAGGT 60.078 57.895 8.30 0.0 40.96 3.50 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1617 1697 0.179037 CCATGATGGCCGTGATCACT 60.179 55.0 22.95 4.18 32.68 3.41 R
1980 4656 1.441738 GGCACCATTTGTTTGATGCC 58.558 50.0 0.00 0.00 45.26 4.40 R
3142 10905 0.458260 AGTTTGCCACCGTGGTTTTC 59.542 50.0 18.95 7.89 40.46 2.29 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 8.749841 ATGAAGATGTCTAATTATGCGTCTAC 57.250 34.615 9.95 0.00 0.00 2.59
41 42 7.145985 TGAAGATGTCTAATTATGCGTCTACC 58.854 38.462 9.95 7.31 0.00 3.18
42 43 6.650427 AGATGTCTAATTATGCGTCTACCA 57.350 37.500 8.52 0.00 0.00 3.25
43 44 7.233389 AGATGTCTAATTATGCGTCTACCAT 57.767 36.000 8.52 0.00 0.00 3.55
44 45 7.671302 AGATGTCTAATTATGCGTCTACCATT 58.329 34.615 8.52 0.00 0.00 3.16
45 46 8.150945 AGATGTCTAATTATGCGTCTACCATTT 58.849 33.333 8.52 0.00 0.00 2.32
46 47 9.419297 GATGTCTAATTATGCGTCTACCATTTA 57.581 33.333 0.00 0.00 0.00 1.40
47 48 9.772973 ATGTCTAATTATGCGTCTACCATTTAA 57.227 29.630 0.00 0.00 0.00 1.52
48 49 9.602568 TGTCTAATTATGCGTCTACCATTTAAA 57.397 29.630 0.00 0.00 0.00 1.52
50 51 8.770828 TCTAATTATGCGTCTACCATTTAAAGC 58.229 33.333 0.00 0.00 0.00 3.51
51 52 6.935741 ATTATGCGTCTACCATTTAAAGCA 57.064 33.333 0.00 0.00 37.77 3.91
52 53 6.935741 TTATGCGTCTACCATTTAAAGCAT 57.064 33.333 10.80 10.80 44.75 3.79
53 54 5.835113 ATGCGTCTACCATTTAAAGCATT 57.165 34.783 2.47 0.00 40.62 3.56
54 55 5.637006 TGCGTCTACCATTTAAAGCATTT 57.363 34.783 0.00 0.00 43.42 2.32
55 56 5.636837 TGCGTCTACCATTTAAAGCATTTC 58.363 37.500 0.00 0.00 40.09 2.17
56 57 4.728608 GCGTCTACCATTTAAAGCATTTCG 59.271 41.667 0.00 0.00 40.09 3.46
57 58 5.672819 GCGTCTACCATTTAAAGCATTTCGT 60.673 40.000 0.00 0.00 40.09 3.85
58 59 5.732647 CGTCTACCATTTAAAGCATTTCGTG 59.267 40.000 0.00 0.00 40.09 4.35
59 60 6.608610 GTCTACCATTTAAAGCATTTCGTGT 58.391 36.000 0.00 0.00 40.09 4.49
60 61 6.523201 GTCTACCATTTAAAGCATTTCGTGTG 59.477 38.462 0.00 0.00 40.09 3.82
61 62 5.195001 ACCATTTAAAGCATTTCGTGTGT 57.805 34.783 0.00 0.00 40.09 3.72
62 63 5.596845 ACCATTTAAAGCATTTCGTGTGTT 58.403 33.333 0.00 0.00 40.09 3.32
63 64 6.045955 ACCATTTAAAGCATTTCGTGTGTTT 58.954 32.000 0.00 0.00 40.09 2.83
64 65 6.200097 ACCATTTAAAGCATTTCGTGTGTTTC 59.800 34.615 0.00 0.00 40.09 2.78
65 66 6.420604 CCATTTAAAGCATTTCGTGTGTTTCT 59.579 34.615 0.00 0.00 40.09 2.52
66 67 6.804534 TTTAAAGCATTTCGTGTGTTTCTG 57.195 33.333 0.00 0.00 40.09 3.02
67 68 4.370364 AAAGCATTTCGTGTGTTTCTGT 57.630 36.364 0.00 0.00 27.08 3.41
68 69 5.493133 AAAGCATTTCGTGTGTTTCTGTA 57.507 34.783 0.00 0.00 27.08 2.74
69 70 4.732285 AGCATTTCGTGTGTTTCTGTAG 57.268 40.909 0.00 0.00 0.00 2.74
70 71 4.127171 AGCATTTCGTGTGTTTCTGTAGT 58.873 39.130 0.00 0.00 0.00 2.73
71 72 4.574828 AGCATTTCGTGTGTTTCTGTAGTT 59.425 37.500 0.00 0.00 0.00 2.24
72 73 4.670621 GCATTTCGTGTGTTTCTGTAGTTG 59.329 41.667 0.00 0.00 0.00 3.16
73 74 4.868450 TTTCGTGTGTTTCTGTAGTTGG 57.132 40.909 0.00 0.00 0.00 3.77
74 75 2.206750 TCGTGTGTTTCTGTAGTTGGC 58.793 47.619 0.00 0.00 0.00 4.52
75 76 1.937223 CGTGTGTTTCTGTAGTTGGCA 59.063 47.619 0.00 0.00 0.00 4.92
76 77 2.548057 CGTGTGTTTCTGTAGTTGGCAT 59.452 45.455 0.00 0.00 0.00 4.40
77 78 3.363970 CGTGTGTTTCTGTAGTTGGCATC 60.364 47.826 0.00 0.00 0.00 3.91
81 82 0.739462 TTCTGTAGTTGGCATCGGCG 60.739 55.000 0.00 0.00 42.47 6.46
115 116 2.138179 ACCAGTAGCCGGTGTGTGT 61.138 57.895 1.90 0.00 34.69 3.72
116 117 1.667830 CCAGTAGCCGGTGTGTGTG 60.668 63.158 1.90 0.00 0.00 3.82
121 122 1.114119 TAGCCGGTGTGTGTGGTACA 61.114 55.000 1.90 0.00 36.82 2.90
135 136 1.801913 GTACACAGCGACGGAGCAG 60.802 63.158 7.12 1.51 40.15 4.24
144 145 1.285023 GACGGAGCAGTACGTGTGT 59.715 57.895 0.00 0.00 44.24 3.72
146 147 1.131883 GACGGAGCAGTACGTGTGTAT 59.868 52.381 0.00 0.00 44.24 2.29
150 151 2.098607 GGAGCAGTACGTGTGTATAGCA 59.901 50.000 0.00 0.00 36.35 3.49
156 157 0.883153 ACGTGTGTATAGCACCGTGA 59.117 50.000 1.65 0.00 45.80 4.35
192 193 1.781025 CGGCGCACTCCAACAAGAAA 61.781 55.000 10.83 0.00 0.00 2.52
194 195 1.202359 GGCGCACTCCAACAAGAAAAA 60.202 47.619 10.83 0.00 0.00 1.94
211 212 2.378445 AAACTTGGTTGGTTGTGCAC 57.622 45.000 10.75 10.75 0.00 4.57
228 229 0.532862 CACGAGTCCCATGCCCATAC 60.533 60.000 0.00 0.00 0.00 2.39
241 242 4.748277 TGCCCATACTTTAGTAGTGGAC 57.252 45.455 14.60 7.99 37.73 4.02
247 248 6.379133 CCCATACTTTAGTAGTGGACTGTGTA 59.621 42.308 14.60 0.00 39.39 2.90
250 251 9.871238 CATACTTTAGTAGTGGACTGTGTAATT 57.129 33.333 0.00 0.00 39.39 1.40
253 254 4.451629 AGTAGTGGACTGTGTAATTCGG 57.548 45.455 0.00 0.00 36.87 4.30
256 257 0.390603 TGGACTGTGTAATTCGGCGG 60.391 55.000 7.21 0.00 0.00 6.13
261 262 0.892755 TGTGTAATTCGGCGGAGACT 59.107 50.000 7.21 0.00 0.00 3.24
279 280 6.976636 GAGACTCTCCACAATAAAAGGAAG 57.023 41.667 0.00 0.00 0.00 3.46
280 281 5.249420 AGACTCTCCACAATAAAAGGAAGC 58.751 41.667 0.00 0.00 0.00 3.86
281 282 4.985538 ACTCTCCACAATAAAAGGAAGCA 58.014 39.130 0.00 0.00 0.00 3.91
282 283 5.574188 ACTCTCCACAATAAAAGGAAGCAT 58.426 37.500 0.00 0.00 0.00 3.79
283 284 5.416952 ACTCTCCACAATAAAAGGAAGCATG 59.583 40.000 0.00 0.00 0.00 4.06
284 285 5.324409 TCTCCACAATAAAAGGAAGCATGT 58.676 37.500 0.00 0.00 0.00 3.21
318 319 4.319549 GCGCCCTGCTAGAAATATAACAAC 60.320 45.833 0.00 0.00 41.73 3.32
323 324 6.281405 CCTGCTAGAAATATAACAACTCGGT 58.719 40.000 0.00 0.00 0.00 4.69
330 331 7.854337 AGAAATATAACAACTCGGTTTCCCTA 58.146 34.615 0.00 0.00 32.29 3.53
349 350 4.706476 CCCTATCATGCCAACAGAAAAAGA 59.294 41.667 0.00 0.00 0.00 2.52
365 366 2.978156 AAGATCCCACCTTGCTTCAA 57.022 45.000 0.00 0.00 0.00 2.69
367 368 2.800250 AGATCCCACCTTGCTTCAAAG 58.200 47.619 0.00 0.00 0.00 2.77
375 376 1.177401 CTTGCTTCAAAGGGTAGCCC 58.823 55.000 7.51 0.00 45.90 5.19
397 398 4.437255 CCGGTTGTGACATGTCAATATGTG 60.437 45.833 29.42 16.86 41.15 3.21
468 474 1.134175 CGTGGTCATAATTTGGGGTGC 59.866 52.381 0.00 0.00 0.00 5.01
499 505 3.373767 GGGTTGCCCAGGTAGGAATAATT 60.374 47.826 0.00 0.00 44.65 1.40
526 549 6.642950 TGATTTTGTTTGTGTGTTTTTCGACT 59.357 30.769 0.00 0.00 0.00 4.18
557 594 2.582052 TGTGAAGTGCTTTCGGGAATT 58.418 42.857 0.00 0.00 38.71 2.17
573 610 4.637276 GGGAATTGGTTGGTTTAGGTTTG 58.363 43.478 0.00 0.00 0.00 2.93
575 612 5.396996 GGGAATTGGTTGGTTTAGGTTTGTT 60.397 40.000 0.00 0.00 0.00 2.83
576 613 6.116806 GGAATTGGTTGGTTTAGGTTTGTTT 58.883 36.000 0.00 0.00 0.00 2.83
579 616 5.740290 TGGTTGGTTTAGGTTTGTTTTGA 57.260 34.783 0.00 0.00 0.00 2.69
583 632 6.819146 GGTTGGTTTAGGTTTGTTTTGATTCA 59.181 34.615 0.00 0.00 0.00 2.57
603 652 1.663739 CCGGTTCTCGTGGTCTTCA 59.336 57.895 0.00 0.00 37.11 3.02
614 663 4.258543 TCGTGGTCTTCATAATTTCCACC 58.741 43.478 0.00 0.00 41.24 4.61
616 665 4.600062 GTGGTCTTCATAATTTCCACCCT 58.400 43.478 0.00 0.00 39.25 4.34
618 667 3.877508 GGTCTTCATAATTTCCACCCTCG 59.122 47.826 0.00 0.00 0.00 4.63
619 668 3.877508 GTCTTCATAATTTCCACCCTCGG 59.122 47.826 0.00 0.00 0.00 4.63
633 696 2.203523 TCGGTGTTCCTCGGACCA 60.204 61.111 0.00 0.00 0.00 4.02
701 764 9.145865 CTTGTAGGTTTTAAAAAGTTTGCTTCA 57.854 29.630 1.31 0.00 33.01 3.02
702 765 9.660180 TTGTAGGTTTTAAAAAGTTTGCTTCAT 57.340 25.926 1.31 0.00 33.01 2.57
706 769 7.826744 AGGTTTTAAAAAGTTTGCTTCATGGAA 59.173 29.630 1.31 0.00 33.01 3.53
716 779 3.344137 TTCATGGAAGCGGAGGCCC 62.344 63.158 0.00 0.00 41.24 5.80
751 814 1.792949 GATTTGCTCAAGACACGTCGT 59.207 47.619 0.00 0.00 34.09 4.34
752 815 2.495409 TTTGCTCAAGACACGTCGTA 57.505 45.000 0.00 0.00 34.09 3.43
807 871 9.150348 CACCCTGGAATTTTGAATGTATTTTAC 57.850 33.333 0.00 0.00 0.00 2.01
852 916 7.862274 ATAATGATCTGTGATACTCCCTTCA 57.138 36.000 0.00 0.00 0.00 3.02
875 939 5.591643 TTTAGAAGCAAGTGACGATGTTC 57.408 39.130 0.00 0.00 0.00 3.18
912 978 9.178758 ACATAATAGTTTCTGAGGCCTTTTAAG 57.821 33.333 6.77 2.76 0.00 1.85
961 1030 6.351711 TGACCACTAGCTTCGAGTACTATTA 58.648 40.000 0.00 0.00 0.00 0.98
963 1032 7.501559 TGACCACTAGCTTCGAGTACTATTAAT 59.498 37.037 0.00 0.00 0.00 1.40
964 1033 7.873910 ACCACTAGCTTCGAGTACTATTAATC 58.126 38.462 0.00 0.00 0.00 1.75
965 1034 7.720515 ACCACTAGCTTCGAGTACTATTAATCT 59.279 37.037 0.00 0.00 0.00 2.40
966 1035 8.231837 CCACTAGCTTCGAGTACTATTAATCTC 58.768 40.741 0.00 0.00 0.00 2.75
970 1039 6.148150 AGCTTCGAGTACTATTAATCTCCTCG 59.852 42.308 15.19 15.19 41.07 4.63
971 1040 5.859521 TCGAGTACTATTAATCTCCTCGC 57.140 43.478 15.97 0.00 39.93 5.03
1006 1082 2.030371 TGCACAAAGAAGCAATGGTGA 58.970 42.857 0.00 0.00 37.90 4.02
1044 1120 1.153289 CTGGCTAGCATGGCTCGTT 60.153 57.895 18.24 0.00 44.74 3.85
1047 1123 1.709147 GGCTAGCATGGCTCGTTGTG 61.709 60.000 18.24 0.00 44.74 3.33
1248 1327 1.739667 CACTGTGGTCGTGTCCTCA 59.260 57.895 0.00 0.00 0.00 3.86
1617 1697 2.106511 CAGTTCCAAGGAGTTCCAGGAA 59.893 50.000 16.49 16.49 44.66 3.36
1641 1721 1.077501 CACGGCCATCATGGAAGGT 60.078 57.895 8.30 0.00 40.96 3.50
1942 4618 3.342377 TTGATTCCAATAGACCGCACA 57.658 42.857 0.00 0.00 0.00 4.57
1945 4621 3.118445 TGATTCCAATAGACCGCACATGA 60.118 43.478 0.00 0.00 0.00 3.07
1946 4622 2.602257 TCCAATAGACCGCACATGAG 57.398 50.000 0.00 0.00 0.00 2.90
1954 4630 2.242572 CCGCACATGAGATGAGCCG 61.243 63.158 0.00 0.00 42.74 5.52
1980 4656 0.458669 GATCAAAGCACATGGCCAGG 59.541 55.000 17.55 17.55 46.50 4.45
1981 4657 0.974010 ATCAAAGCACATGGCCAGGG 60.974 55.000 23.35 14.10 46.50 4.45
1982 4658 2.999063 AAAGCACATGGCCAGGGC 60.999 61.111 23.35 20.96 46.50 5.19
1983 4659 3.831727 AAAGCACATGGCCAGGGCA 62.832 57.895 25.63 19.93 46.50 5.36
2046 4768 6.233430 TCGAGATAGTAACTATAACGTGGC 57.767 41.667 0.00 0.00 32.00 5.01
2070 4792 7.387397 GGCACAAATTTCATATCCAACTTTGAA 59.613 33.333 11.11 0.00 0.00 2.69
2140 4862 8.413309 AGTAACCAATTTGCATATATGATGCT 57.587 30.769 17.10 0.00 44.79 3.79
2142 4864 7.956420 AACCAATTTGCATATATGATGCTTG 57.044 32.000 17.10 12.48 44.79 4.01
2143 4865 7.058023 ACCAATTTGCATATATGATGCTTGT 57.942 32.000 17.10 2.19 44.79 3.16
2144 4866 7.502696 ACCAATTTGCATATATGATGCTTGTT 58.497 30.769 17.10 0.75 44.79 2.83
2145 4867 8.640651 ACCAATTTGCATATATGATGCTTGTTA 58.359 29.630 17.10 0.00 44.79 2.41
2203 9934 4.573900 ACCAATGTGCAGTTCAAAACAAA 58.426 34.783 0.00 0.00 0.00 2.83
2249 9980 4.764172 AGCAAATGATCCAGTGTACTCTC 58.236 43.478 0.00 0.00 0.00 3.20
2382 10136 1.203038 ACAGTGGAATGGGCAATGACA 60.203 47.619 0.00 0.00 0.00 3.58
2476 10230 9.852091 GAAGAAACATTGAAGAAGCTGATATTT 57.148 29.630 0.00 0.00 0.00 1.40
2481 10235 6.820656 ACATTGAAGAAGCTGATATTTCTCGT 59.179 34.615 0.00 0.00 32.71 4.18
2499 10253 1.678728 CGTTTGCCCTATCTCCAAGCA 60.679 52.381 0.00 0.00 0.00 3.91
2616 10370 0.865769 AAGGTTCACGCGTGTTCATC 59.134 50.000 35.74 21.91 0.00 2.92
2654 10408 8.830915 ATAGGTCGAGATAAAGATGTATGGAT 57.169 34.615 0.00 0.00 0.00 3.41
2694 10448 0.036294 CGGAGAGGTTCTTGGGTTCC 60.036 60.000 0.00 0.00 0.00 3.62
2703 10457 3.081804 GTTCTTGGGTTCCACGATTGAT 58.918 45.455 0.00 0.00 31.92 2.57
2707 10461 4.217550 TCTTGGGTTCCACGATTGATTTTC 59.782 41.667 0.00 0.00 30.78 2.29
2860 10614 0.472471 GCTGGAACGGGATGGGATTA 59.528 55.000 0.00 0.00 33.56 1.75
2972 10732 5.591099 ACATTGTTGAGAATGGTGTTGTTC 58.409 37.500 5.93 0.00 37.60 3.18
3271 11049 9.790344 AGATCTTTGACCAGGAAATATATGAAG 57.210 33.333 0.00 0.00 0.00 3.02
3435 11262 6.704056 AGGGAAACAGAGAGAAAAATAGGA 57.296 37.500 0.00 0.00 0.00 2.94
3438 11265 7.448777 AGGGAAACAGAGAGAAAAATAGGAAAC 59.551 37.037 0.00 0.00 0.00 2.78
3507 11341 6.670695 ACAGTAAAGAAATGGCATTTTCCT 57.329 33.333 25.02 16.06 36.47 3.36
3672 13541 1.919600 AAGTCCAGGAGCCTCCATGC 61.920 60.000 14.46 0.00 39.61 4.06
3702 13571 4.941263 GCTGGTTTATGAGTTATGACACCA 59.059 41.667 0.00 0.00 0.00 4.17
3828 13698 6.647229 ACATCTGATTTTGTATCTGCTCTGA 58.353 36.000 0.00 0.00 0.00 3.27
3841 13711 2.734079 CTGCTCTGAACCGTTTTCTCTC 59.266 50.000 0.00 0.00 0.00 3.20
3844 13714 3.553096 GCTCTGAACCGTTTTCTCTCTGA 60.553 47.826 0.00 0.00 0.00 3.27
3907 13780 6.183360 GGGATTTCATTTTCATTCCCATTTGC 60.183 38.462 0.94 0.00 42.03 3.68
3909 13782 3.859443 TCATTTTCATTCCCATTTGCGG 58.141 40.909 0.00 0.00 0.00 5.69
3929 13802 7.736447 TGCGGGAAAAATATGAAAACAAATT 57.264 28.000 0.00 0.00 0.00 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 9.841880 GTAGACGCATAATTAGACATCTTCATA 57.158 33.333 0.00 0.00 0.00 2.15
15 16 7.815068 GGTAGACGCATAATTAGACATCTTCAT 59.185 37.037 0.00 0.00 0.00 2.57
17 18 7.145985 TGGTAGACGCATAATTAGACATCTTC 58.854 38.462 0.00 0.00 0.00 2.87
18 19 7.050970 TGGTAGACGCATAATTAGACATCTT 57.949 36.000 0.00 0.00 0.00 2.40
19 20 6.650427 TGGTAGACGCATAATTAGACATCT 57.350 37.500 0.00 0.00 0.00 2.90
20 21 7.891183 AATGGTAGACGCATAATTAGACATC 57.109 36.000 0.00 0.00 0.00 3.06
21 22 9.772973 TTAAATGGTAGACGCATAATTAGACAT 57.227 29.630 0.00 0.00 0.00 3.06
22 23 9.602568 TTTAAATGGTAGACGCATAATTAGACA 57.397 29.630 0.00 0.00 0.00 3.41
24 25 8.770828 GCTTTAAATGGTAGACGCATAATTAGA 58.229 33.333 0.00 0.00 0.00 2.10
25 26 8.556194 TGCTTTAAATGGTAGACGCATAATTAG 58.444 33.333 0.00 0.00 0.00 1.73
26 27 8.439993 TGCTTTAAATGGTAGACGCATAATTA 57.560 30.769 0.00 0.00 0.00 1.40
27 28 7.328277 TGCTTTAAATGGTAGACGCATAATT 57.672 32.000 0.00 0.00 0.00 1.40
28 29 6.935741 TGCTTTAAATGGTAGACGCATAAT 57.064 33.333 0.00 0.00 0.00 1.28
29 30 6.935741 ATGCTTTAAATGGTAGACGCATAA 57.064 33.333 5.73 0.00 35.35 1.90
30 31 6.935741 AATGCTTTAAATGGTAGACGCATA 57.064 33.333 7.47 0.00 36.00 3.14
31 32 5.835113 AATGCTTTAAATGGTAGACGCAT 57.165 34.783 2.47 2.47 38.37 4.73
32 33 5.636837 GAAATGCTTTAAATGGTAGACGCA 58.363 37.500 0.00 0.00 0.00 5.24
33 34 4.728608 CGAAATGCTTTAAATGGTAGACGC 59.271 41.667 0.00 0.00 0.00 5.19
34 35 5.732647 CACGAAATGCTTTAAATGGTAGACG 59.267 40.000 0.00 0.00 0.00 4.18
35 36 6.523201 CACACGAAATGCTTTAAATGGTAGAC 59.477 38.462 0.00 0.00 0.00 2.59
36 37 6.205853 ACACACGAAATGCTTTAAATGGTAGA 59.794 34.615 0.00 0.00 0.00 2.59
37 38 6.378582 ACACACGAAATGCTTTAAATGGTAG 58.621 36.000 0.00 0.00 0.00 3.18
38 39 6.320494 ACACACGAAATGCTTTAAATGGTA 57.680 33.333 0.00 0.00 0.00 3.25
39 40 5.195001 ACACACGAAATGCTTTAAATGGT 57.805 34.783 0.00 0.00 0.00 3.55
40 41 6.420604 AGAAACACACGAAATGCTTTAAATGG 59.579 34.615 0.00 0.00 0.00 3.16
41 42 7.043458 ACAGAAACACACGAAATGCTTTAAATG 60.043 33.333 0.00 0.00 0.00 2.32
42 43 6.978080 ACAGAAACACACGAAATGCTTTAAAT 59.022 30.769 0.00 0.00 0.00 1.40
43 44 6.326375 ACAGAAACACACGAAATGCTTTAAA 58.674 32.000 0.00 0.00 0.00 1.52
44 45 5.885881 ACAGAAACACACGAAATGCTTTAA 58.114 33.333 0.00 0.00 0.00 1.52
45 46 5.493133 ACAGAAACACACGAAATGCTTTA 57.507 34.783 0.00 0.00 0.00 1.85
46 47 4.370364 ACAGAAACACACGAAATGCTTT 57.630 36.364 0.00 0.00 0.00 3.51
47 48 4.574828 ACTACAGAAACACACGAAATGCTT 59.425 37.500 0.00 0.00 0.00 3.91
48 49 4.127171 ACTACAGAAACACACGAAATGCT 58.873 39.130 0.00 0.00 0.00 3.79
49 50 4.468095 ACTACAGAAACACACGAAATGC 57.532 40.909 0.00 0.00 0.00 3.56
50 51 5.204833 CCAACTACAGAAACACACGAAATG 58.795 41.667 0.00 0.00 0.00 2.32
51 52 4.261031 GCCAACTACAGAAACACACGAAAT 60.261 41.667 0.00 0.00 0.00 2.17
52 53 3.064271 GCCAACTACAGAAACACACGAAA 59.936 43.478 0.00 0.00 0.00 3.46
53 54 2.610374 GCCAACTACAGAAACACACGAA 59.390 45.455 0.00 0.00 0.00 3.85
54 55 2.206750 GCCAACTACAGAAACACACGA 58.793 47.619 0.00 0.00 0.00 4.35
55 56 1.937223 TGCCAACTACAGAAACACACG 59.063 47.619 0.00 0.00 0.00 4.49
56 57 3.363970 CGATGCCAACTACAGAAACACAC 60.364 47.826 0.00 0.00 0.00 3.82
57 58 2.805671 CGATGCCAACTACAGAAACACA 59.194 45.455 0.00 0.00 0.00 3.72
58 59 2.159627 CCGATGCCAACTACAGAAACAC 59.840 50.000 0.00 0.00 0.00 3.32
59 60 2.422597 CCGATGCCAACTACAGAAACA 58.577 47.619 0.00 0.00 0.00 2.83
60 61 1.130561 GCCGATGCCAACTACAGAAAC 59.869 52.381 0.00 0.00 0.00 2.78
61 62 1.448985 GCCGATGCCAACTACAGAAA 58.551 50.000 0.00 0.00 0.00 2.52
62 63 0.739462 CGCCGATGCCAACTACAGAA 60.739 55.000 0.00 0.00 0.00 3.02
63 64 1.153647 CGCCGATGCCAACTACAGA 60.154 57.895 0.00 0.00 0.00 3.41
64 65 2.173669 CCGCCGATGCCAACTACAG 61.174 63.158 0.00 0.00 0.00 2.74
65 66 2.125310 CCGCCGATGCCAACTACA 60.125 61.111 0.00 0.00 0.00 2.74
66 67 3.573491 GCCGCCGATGCCAACTAC 61.573 66.667 0.00 0.00 0.00 2.73
67 68 3.323758 AAGCCGCCGATGCCAACTA 62.324 57.895 0.00 0.00 0.00 2.24
68 69 4.722700 AAGCCGCCGATGCCAACT 62.723 61.111 0.00 0.00 0.00 3.16
69 70 4.481112 CAAGCCGCCGATGCCAAC 62.481 66.667 0.00 0.00 0.00 3.77
92 93 2.603473 ACCGGCTACTGGTGCAGA 60.603 61.111 0.00 0.00 38.60 4.26
100 101 0.828762 TACCACACACACCGGCTACT 60.829 55.000 0.00 0.00 0.00 2.57
115 116 2.959372 CTCCGTCGCTGTGTACCA 59.041 61.111 0.00 0.00 0.00 3.25
116 117 2.506438 GCTCCGTCGCTGTGTACC 60.506 66.667 0.00 0.00 0.00 3.34
121 122 2.567049 GTACTGCTCCGTCGCTGT 59.433 61.111 9.82 9.82 43.22 4.40
123 124 3.054503 ACGTACTGCTCCGTCGCT 61.055 61.111 0.00 0.00 30.05 4.93
144 145 4.827692 AGTTTGACATTCACGGTGCTATA 58.172 39.130 2.51 0.00 0.00 1.31
146 147 3.064207 GAGTTTGACATTCACGGTGCTA 58.936 45.455 2.51 0.00 0.00 3.49
150 151 1.873591 GCTGAGTTTGACATTCACGGT 59.126 47.619 0.00 0.00 0.00 4.83
154 155 1.792367 CGTCGCTGAGTTTGACATTCA 59.208 47.619 3.39 0.00 32.91 2.57
156 157 1.148310 CCGTCGCTGAGTTTGACATT 58.852 50.000 0.00 0.00 32.91 2.71
192 193 1.403514 CGTGCACAACCAACCAAGTTT 60.404 47.619 18.64 0.00 0.00 2.66
194 195 0.678366 TCGTGCACAACCAACCAAGT 60.678 50.000 18.64 0.00 0.00 3.16
211 212 0.469917 AAGTATGGGCATGGGACTCG 59.530 55.000 0.00 0.00 0.00 4.18
228 229 6.530534 CCGAATTACACAGTCCACTACTAAAG 59.469 42.308 0.00 0.00 35.76 1.85
241 242 1.135083 AGTCTCCGCCGAATTACACAG 60.135 52.381 0.00 0.00 0.00 3.66
247 248 1.817209 GGAGAGTCTCCGCCGAATT 59.183 57.895 23.33 0.00 41.08 2.17
256 257 5.352846 GCTTCCTTTTATTGTGGAGAGTCTC 59.647 44.000 12.01 12.01 0.00 3.36
261 262 5.183713 CACATGCTTCCTTTTATTGTGGAGA 59.816 40.000 0.00 0.00 0.00 3.71
278 279 3.001902 GCTGCACATGCCACATGCT 62.002 57.895 7.46 0.00 42.00 3.79
279 280 2.508439 GCTGCACATGCCACATGC 60.508 61.111 7.46 0.00 41.18 4.06
280 281 2.202557 CGCTGCACATGCCACATG 60.203 61.111 6.03 6.03 41.18 3.21
281 282 4.124351 GCGCTGCACATGCCACAT 62.124 61.111 0.00 0.00 41.18 3.21
300 301 7.772332 AACCGAGTTGTTATATTTCTAGCAG 57.228 36.000 0.00 0.00 0.00 4.24
323 324 4.314522 TTCTGTTGGCATGATAGGGAAA 57.685 40.909 0.00 0.00 0.00 3.13
330 331 4.161001 GGGATCTTTTTCTGTTGGCATGAT 59.839 41.667 0.00 0.00 0.00 2.45
349 350 1.550869 CCCTTTGAAGCAAGGTGGGAT 60.551 52.381 0.00 0.00 34.56 3.85
365 366 1.844289 TCACAACCGGGCTACCCTT 60.844 57.895 6.32 0.00 42.67 3.95
367 368 2.046604 GTCACAACCGGGCTACCC 60.047 66.667 6.32 0.00 41.09 3.69
375 376 4.391523 TCACATATTGACATGTCACAACCG 59.608 41.667 27.88 16.85 39.66 4.44
376 377 5.878332 TCACATATTGACATGTCACAACC 57.122 39.130 27.88 0.00 39.66 3.77
426 430 9.745880 CCACGAATGTTCACTAGTTAGTAATAT 57.254 33.333 0.00 0.00 34.13 1.28
427 431 8.742777 ACCACGAATGTTCACTAGTTAGTAATA 58.257 33.333 0.00 0.00 34.13 0.98
436 441 7.539712 AATTATGACCACGAATGTTCACTAG 57.460 36.000 0.00 0.00 0.00 2.57
438 443 6.349280 CCAAATTATGACCACGAATGTTCACT 60.349 38.462 0.00 0.00 0.00 3.41
439 444 5.799936 CCAAATTATGACCACGAATGTTCAC 59.200 40.000 0.00 0.00 0.00 3.18
441 446 5.339990 CCCAAATTATGACCACGAATGTTC 58.660 41.667 0.00 0.00 0.00 3.18
448 453 1.134175 GCACCCCAAATTATGACCACG 59.866 52.381 0.00 0.00 0.00 4.94
484 490 9.942850 AACAAAATCAAAATTATTCCTACCTGG 57.057 29.630 0.00 0.00 37.10 4.45
499 505 7.794349 GTCGAAAAACACACAAACAAAATCAAA 59.206 29.630 0.00 0.00 0.00 2.69
557 594 5.740290 TCAAAACAAACCTAAACCAACCA 57.260 34.783 0.00 0.00 0.00 3.67
573 610 2.412847 CGAGAACCGGCTGAATCAAAAC 60.413 50.000 0.00 0.00 33.91 2.43
575 612 1.270625 ACGAGAACCGGCTGAATCAAA 60.271 47.619 0.00 0.00 43.93 2.69
576 613 0.320374 ACGAGAACCGGCTGAATCAA 59.680 50.000 0.00 0.00 43.93 2.57
579 616 1.079127 CCACGAGAACCGGCTGAAT 60.079 57.895 0.00 0.00 43.93 2.57
583 632 2.156051 GAAGACCACGAGAACCGGCT 62.156 60.000 0.00 0.00 43.93 5.52
614 663 2.572284 GTCCGAGGAACACCGAGG 59.428 66.667 0.00 0.00 0.00 4.63
616 665 2.203523 TGGTCCGAGGAACACCGA 60.204 61.111 5.64 0.00 36.85 4.69
618 667 2.047179 GCTGGTCCGAGGAACACC 60.047 66.667 5.64 0.00 36.85 4.16
619 668 2.432628 CGCTGGTCCGAGGAACAC 60.433 66.667 5.64 3.08 36.85 3.32
621 670 2.126031 GTCGCTGGTCCGAGGAAC 60.126 66.667 0.00 0.00 37.99 3.62
622 671 3.744719 CGTCGCTGGTCCGAGGAA 61.745 66.667 0.00 0.00 43.49 3.36
701 764 2.843912 CTTTGGGCCTCCGCTTCCAT 62.844 60.000 4.53 0.00 35.24 3.41
702 765 3.567579 CTTTGGGCCTCCGCTTCCA 62.568 63.158 4.53 0.00 35.24 3.53
716 779 2.919229 GCAAATCTCAATGTCGCCTTTG 59.081 45.455 0.00 0.00 0.00 2.77
751 814 8.985315 AATCTTTTTACTCATGCATCCATCTA 57.015 30.769 0.00 0.00 0.00 1.98
752 815 7.893124 AATCTTTTTACTCATGCATCCATCT 57.107 32.000 0.00 0.00 0.00 2.90
826 890 9.552695 TGAAGGGAGTATCACAGATCATTATAT 57.447 33.333 0.00 0.00 45.06 0.86
852 916 5.934625 AGAACATCGTCACTTGCTTCTAAAT 59.065 36.000 0.00 0.00 0.00 1.40
1006 1082 2.770589 GCACAAGCACAACCACGGT 61.771 57.895 0.00 0.00 41.58 4.83
1044 1120 4.476846 AGATAGAAGGAGAGGAGAGACACA 59.523 45.833 0.00 0.00 0.00 3.72
1047 1123 4.351111 AGGAGATAGAAGGAGAGGAGAGAC 59.649 50.000 0.00 0.00 0.00 3.36
1617 1697 0.179037 CCATGATGGCCGTGATCACT 60.179 55.000 22.95 4.18 32.68 3.41
1641 1721 2.206036 AAGTTCGGGGTCCCCAGA 59.794 61.111 27.45 20.68 45.83 3.86
1665 1745 2.358247 GCGAGCACCGGGAAGAAA 60.358 61.111 6.32 0.00 39.04 2.52
1913 4507 7.012421 GCGGTCTATTGGAATCAAAGAGTAATT 59.988 37.037 0.00 0.00 36.36 1.40
1914 4508 6.483640 GCGGTCTATTGGAATCAAAGAGTAAT 59.516 38.462 0.00 0.00 36.36 1.89
1931 4607 2.288702 GCTCATCTCATGTGCGGTCTAT 60.289 50.000 0.00 0.00 39.55 1.98
1942 4618 3.933722 CCGGCCGGCTCATCTCAT 61.934 66.667 34.96 0.00 0.00 2.90
1954 4630 3.140814 GTGCTTTGATCCCCGGCC 61.141 66.667 0.00 0.00 0.00 6.13
1980 4656 1.441738 GGCACCATTTGTTTGATGCC 58.558 50.000 0.00 0.00 45.26 4.40
1981 4657 1.799994 GTGGCACCATTTGTTTGATGC 59.200 47.619 6.29 0.00 0.00 3.91
1982 4658 3.109044 TGTGGCACCATTTGTTTGATG 57.891 42.857 16.26 0.00 0.00 3.07
1983 4659 3.557475 CCATGTGGCACCATTTGTTTGAT 60.557 43.478 16.26 0.00 0.00 2.57
1984 4660 2.224233 CCATGTGGCACCATTTGTTTGA 60.224 45.455 16.26 0.00 0.00 2.69
2017 4726 8.347771 ACGTTATAGTTACTATCTCGATGCAAA 58.652 33.333 24.10 5.61 32.07 3.68
2137 4859 9.304731 GCAATAATTCATTCATTCTAACAAGCA 57.695 29.630 0.00 0.00 0.00 3.91
2138 4860 9.304731 TGCAATAATTCATTCATTCTAACAAGC 57.695 29.630 0.00 0.00 0.00 4.01
2234 9965 4.798924 GCATCATGGAGAGTACACTGGATC 60.799 50.000 0.00 0.00 0.00 3.36
2382 10136 2.376518 TGATGGGTTTTGGAGAAGCTCT 59.623 45.455 0.00 0.00 0.00 4.09
2414 10168 2.733218 CGAGCTCGTCGCAAACCA 60.733 61.111 27.79 0.00 43.03 3.67
2430 10184 1.061131 CTTGAGCCGATAACTTGTGCG 59.939 52.381 0.00 0.00 0.00 5.34
2476 10230 1.860641 TGGAGATAGGGCAAACGAGA 58.139 50.000 0.00 0.00 0.00 4.04
2481 10235 1.635487 ACTGCTTGGAGATAGGGCAAA 59.365 47.619 0.00 0.00 32.43 3.68
2499 10253 6.869388 GGAGTCGAAAAGTCTCTTTTATGACT 59.131 38.462 24.98 24.98 44.40 3.41
2616 10370 1.779569 GACCTATCGCCCATACGTTG 58.220 55.000 0.00 0.00 0.00 4.10
2654 10408 3.751175 CGGCATAAACTTCTCAGGTTCAA 59.249 43.478 0.00 0.00 30.24 2.69
2694 10448 1.810151 ACACCCCGAAAATCAATCGTG 59.190 47.619 0.00 0.00 38.60 4.35
2703 10457 2.625790 CTCAAAATCCACACCCCGAAAA 59.374 45.455 0.00 0.00 0.00 2.29
2707 10461 0.609131 AGCTCAAAATCCACACCCCG 60.609 55.000 0.00 0.00 0.00 5.73
2823 10577 0.908198 GCTCAACAGGGAGACTCCAT 59.092 55.000 23.06 13.89 38.64 3.41
2860 10614 4.891756 CAGGCCAAACTGATCTTCCATATT 59.108 41.667 5.01 0.00 40.97 1.28
3053 10813 8.616076 CATTGACTAATGAAGGTATGAAAGGTC 58.384 37.037 0.00 0.00 45.21 3.85
3142 10905 0.458260 AGTTTGCCACCGTGGTTTTC 59.542 50.000 18.95 7.89 40.46 2.29
3243 11007 8.159447 TCATATATTTCCTGGTCAAAGATCTGG 58.841 37.037 0.00 0.00 33.81 3.86
3244 11008 9.565090 TTCATATATTTCCTGGTCAAAGATCTG 57.435 33.333 0.00 0.00 0.00 2.90
3271 11049 6.628461 CACAATCCAAAAGCGAAATTTGTTTC 59.372 34.615 0.00 0.00 36.31 2.78
3282 11060 0.591170 ACGGTCACAATCCAAAAGCG 59.409 50.000 0.00 0.00 36.93 4.68
3331 11153 4.081420 CCATCCGAAAGCACTATAGCCTAT 60.081 45.833 0.00 0.00 34.23 2.57
3435 11262 8.729805 TGTTTTGCAATCTTCCTATTTTGTTT 57.270 26.923 0.00 0.00 0.00 2.83
3443 11272 8.359875 TCCATTATTGTTTTGCAATCTTCCTA 57.640 30.769 0.00 0.00 43.86 2.94
3479 11310 8.962884 AAAATGCCATTTCTTTACTGTTTCTT 57.037 26.923 2.61 0.00 0.00 2.52
3672 13541 1.705337 CTCATAAACCAGCCGCACCG 61.705 60.000 0.00 0.00 0.00 4.94
3748 13617 9.248291 GAGAAAATCACATGAAAACTAGCAAAA 57.752 29.630 0.00 0.00 0.00 2.44
3762 13631 7.156673 CCCTTGAACAATTGAGAAAATCACAT 58.843 34.615 13.59 0.00 37.77 3.21
3794 13663 3.492421 AAATCAGATGTTTGCGCGAAT 57.508 38.095 14.34 0.00 0.00 3.34
3795 13664 2.979151 CAAAATCAGATGTTTGCGCGAA 59.021 40.909 12.10 5.81 0.00 4.70
3797 13666 2.318578 ACAAAATCAGATGTTTGCGCG 58.681 42.857 0.00 0.00 38.10 6.86
3798 13667 5.228635 CAGATACAAAATCAGATGTTTGCGC 59.771 40.000 0.00 0.00 38.10 6.09
3800 13669 6.327934 AGCAGATACAAAATCAGATGTTTGC 58.672 36.000 13.61 7.87 38.10 3.68
3856 13729 7.060174 CCAAAAGTGAATACGGAAACAAATACG 59.940 37.037 0.00 0.00 0.00 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.