Multiple sequence alignment - TraesCS2D01G547000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G547000 chr2D 100.000 2914 0 0 1 2914 623474964 623477877 0.000000e+00 5382.0
1 TraesCS2D01G547000 chr2D 97.613 1257 27 1 699 1955 427097813 427096560 0.000000e+00 2152.0
2 TraesCS2D01G547000 chr2D 96.721 305 10 0 2275 2579 427092818 427092514 2.590000e-140 508.0
3 TraesCS2D01G547000 chr2D 99.167 240 2 0 2034 2273 427096565 427096326 1.600000e-117 433.0
4 TraesCS2D01G547000 chr2D 93.839 211 12 1 2370 2579 623475854 623475644 1.690000e-82 316.0
5 TraesCS2D01G547000 chr2D 93.839 211 12 1 681 891 623477542 623477333 1.690000e-82 316.0
6 TraesCS2D01G547000 chr2D 91.781 219 17 1 673 891 427092506 427092723 1.310000e-78 303.0
7 TraesCS2D01G547000 chr2D 93.782 193 11 1 2370 2561 427097621 427097813 3.670000e-74 289.0
8 TraesCS2D01G547000 chr2D 95.349 43 2 0 45 87 623494069 623494111 5.210000e-08 69.4
9 TraesCS2D01G547000 chr2D 95.349 43 2 0 45 87 623495563 623495605 5.210000e-08 69.4
10 TraesCS2D01G547000 chr2D 97.436 39 1 0 2142 2180 584528172 584528210 1.870000e-07 67.6
11 TraesCS2D01G547000 chr1A 95.161 1612 56 3 680 2271 321227738 321229347 0.000000e+00 2525.0
12 TraesCS2D01G547000 chr1A 91.503 306 25 1 2272 2576 321246425 321246730 1.250000e-113 420.0
13 TraesCS2D01G547000 chr1A 93.750 208 13 0 684 891 321246730 321246523 2.180000e-81 313.0
14 TraesCS2D01G547000 chr1A 92.891 211 14 1 2370 2579 321227949 321227739 3.650000e-79 305.0
15 TraesCS2D01G547000 chr1D 98.484 1253 19 0 681 1933 405376659 405377911 0.000000e+00 2209.0
16 TraesCS2D01G547000 chr1D 97.445 274 7 0 2295 2568 405377921 405378194 4.400000e-128 468.0
17 TraesCS2D01G547000 chr1D 94.811 212 10 1 2370 2580 405376869 405376658 2.160000e-86 329.0
18 TraesCS2D01G547000 chr1D 92.424 198 14 1 692 889 405378194 405377998 6.150000e-72 281.0
19 TraesCS2D01G547000 chr7A 95.549 337 14 1 2579 2914 621789700 621789364 3.300000e-149 538.0
20 TraesCS2D01G547000 chr7A 95.221 272 13 0 2579 2850 542451684 542451955 5.770000e-117 431.0
21 TraesCS2D01G547000 chr7A 94.636 261 13 1 2654 2914 532540399 532540140 1.260000e-108 403.0
22 TraesCS2D01G547000 chr7A 91.500 200 16 1 484 682 542451496 542451695 1.030000e-69 274.0
23 TraesCS2D01G547000 chr7A 90.594 202 17 2 483 682 532540636 532540435 1.720000e-67 267.0
24 TraesCS2D01G547000 chr7A 90.000 200 19 1 484 682 621789888 621789689 1.040000e-64 257.0
25 TraesCS2D01G547000 chr6A 93.175 337 22 1 2579 2914 83680900 83680564 7.250000e-136 494.0
26 TraesCS2D01G547000 chr6A 89.500 200 20 1 484 682 83681088 83680889 4.820000e-63 252.0
27 TraesCS2D01G547000 chr5A 93.452 336 16 2 2579 2914 378269419 378269090 7.250000e-136 494.0
28 TraesCS2D01G547000 chr5A 89.542 153 13 2 145 297 454273631 454273780 1.070000e-44 191.0
29 TraesCS2D01G547000 chr1B 93.452 336 16 2 2579 2914 540368036 540367707 7.250000e-136 494.0
30 TraesCS2D01G547000 chr5B 95.425 306 14 0 2275 2580 639225481 639225176 3.380000e-134 488.0
31 TraesCS2D01G547000 chr5B 93.117 247 17 0 681 927 639227722 639227476 2.130000e-96 363.0
32 TraesCS2D01G547000 chr5B 93.839 211 12 1 2370 2579 639227512 639227722 1.690000e-82 316.0
33 TraesCS2D01G547000 chr5B 92.344 209 15 1 681 889 639225177 639225384 2.200000e-76 296.0
34 TraesCS2D01G547000 chr5B 95.575 113 5 0 2161 2273 639227478 639227366 6.410000e-42 182.0
35 TraesCS2D01G547000 chr6B 92.857 336 18 2 2579 2914 675708211 675707882 1.570000e-132 483.0
36 TraesCS2D01G547000 chr6B 90.500 200 18 1 484 682 675708399 675708200 2.230000e-66 263.0
37 TraesCS2D01G547000 chr4A 95.290 276 12 1 2640 2914 633325713 633325438 1.240000e-118 436.0
38 TraesCS2D01G547000 chr4A 92.500 200 14 1 484 682 633325938 633325739 4.750000e-73 285.0
39 TraesCS2D01G547000 chr4A 86.124 209 19 5 483 682 722246294 722246087 1.760000e-52 217.0
40 TraesCS2D01G547000 chr4A 87.634 186 21 2 298 483 615002554 615002737 6.320000e-52 215.0
41 TraesCS2D01G547000 chr4A 95.122 41 2 0 2579 2619 633325750 633325710 6.740000e-07 65.8
42 TraesCS2D01G547000 chr6D 88.690 336 30 5 2579 2914 5373224 5373551 1.260000e-108 403.0
43 TraesCS2D01G547000 chr6D 100.000 36 0 0 2145 2180 2065650 2065615 1.870000e-07 67.6
44 TraesCS2D01G547000 chr6D 97.368 38 1 0 2143 2180 62116132 62116169 6.740000e-07 65.8
45 TraesCS2D01G547000 chr3D 90.000 200 19 1 484 682 597215311 597215510 1.040000e-64 257.0
46 TraesCS2D01G547000 chr3D 90.132 152 12 2 146 297 500551876 500551728 8.240000e-46 195.0
47 TraesCS2D01G547000 chr3D 95.614 114 5 0 2801 2914 603648763 603648650 1.780000e-42 183.0
48 TraesCS2D01G547000 chr3D 100.000 36 0 0 2145 2180 339862288 339862253 1.870000e-07 67.6
49 TraesCS2D01G547000 chr5D 87.981 208 15 5 484 682 421471851 421471645 1.350000e-58 237.0
50 TraesCS2D01G547000 chr5D 96.491 114 4 0 2801 2914 421471337 421471224 3.830000e-44 189.0
51 TraesCS2D01G547000 chr5D 84.211 171 20 5 320 484 40983949 40983780 3.010000e-35 159.0
52 TraesCS2D01G547000 chr3B 90.196 153 12 2 145 297 798650361 798650212 2.290000e-46 196.0
53 TraesCS2D01G547000 chr4B 89.542 153 13 2 145 297 39197984 39198133 1.070000e-44 191.0
54 TraesCS2D01G547000 chr2B 89.542 153 13 2 145 297 551152175 551152026 1.070000e-44 191.0
55 TraesCS2D01G547000 chr2B 89.542 153 13 2 145 297 595270633 595270782 1.070000e-44 191.0
56 TraesCS2D01G547000 chr3A 88.889 153 14 2 145 297 19986009 19985860 4.960000e-43 185.0
57 TraesCS2D01G547000 chr3A 88.889 153 14 2 145 297 574456309 574456458 4.960000e-43 185.0
58 TraesCS2D01G547000 chr3A 88.889 153 13 3 145 297 683197751 683197899 4.960000e-43 185.0
59 TraesCS2D01G547000 chr7D 91.667 48 3 1 2134 2180 120722349 120722302 6.740000e-07 65.8
60 TraesCS2D01G547000 chr4D 100.000 35 0 0 2146 2180 506203520 506203554 6.740000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G547000 chr2D 623474964 623477877 2913 False 5382.000000 5382 100.000000 1 2914 1 chr2D.!!$F4 2913
1 TraesCS2D01G547000 chr2D 427092514 427097813 5299 True 1031.000000 2152 97.833667 699 2579 3 chr2D.!!$R1 1880
2 TraesCS2D01G547000 chr2D 623475644 623477542 1898 True 316.000000 316 93.839000 681 2579 2 chr2D.!!$R2 1898
3 TraesCS2D01G547000 chr1A 321227738 321229347 1609 False 2525.000000 2525 95.161000 680 2271 1 chr1A.!!$F1 1591
4 TraesCS2D01G547000 chr1D 405376659 405378194 1535 False 1338.500000 2209 97.964500 681 2568 2 chr1D.!!$F1 1887
5 TraesCS2D01G547000 chr1D 405376658 405378194 1536 True 305.000000 329 93.617500 692 2580 2 chr1D.!!$R1 1888
6 TraesCS2D01G547000 chr7A 621789364 621789888 524 True 397.500000 538 92.774500 484 2914 2 chr7A.!!$R2 2430
7 TraesCS2D01G547000 chr6A 83680564 83681088 524 True 373.000000 494 91.337500 484 2914 2 chr6A.!!$R1 2430
8 TraesCS2D01G547000 chr5B 639225176 639227722 2546 True 344.333333 488 94.705667 681 2580 3 chr5B.!!$R1 1899
9 TraesCS2D01G547000 chr5B 639225177 639227722 2545 False 306.000000 316 93.091500 681 2579 2 chr5B.!!$F1 1898
10 TraesCS2D01G547000 chr6B 675707882 675708399 517 True 373.000000 483 91.678500 484 2914 2 chr6B.!!$R1 2430
11 TraesCS2D01G547000 chr4A 633325438 633325938 500 True 262.266667 436 94.304000 484 2914 3 chr4A.!!$R2 2430
12 TraesCS2D01G547000 chr5D 421471224 421471851 627 True 213.000000 237 92.236000 484 2914 2 chr5D.!!$R2 2430

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
30 31 0.033011 GCTAGGGAGAGGAGTGGTGA 60.033 60.0 0.0 0.0 0.0 4.02 F
103 104 0.034863 TCGCCAAAATACTCCCCACC 60.035 55.0 0.0 0.0 0.0 4.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1017 1056 1.186200 CCTCAGACGATTCCTCACCA 58.814 55.0 0.00 0.0 0.00 4.17 R
2028 3606 6.500684 TCACTTCACTTCATTGAAATAGCC 57.499 37.5 0.01 0.0 35.07 3.93 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 4.896829 CGCCGGCTAGGGAGAGGA 62.897 72.222 26.68 0.00 41.48 3.71
24 25 2.915137 GCCGGCTAGGGAGAGGAG 60.915 72.222 22.15 0.00 41.48 3.69
25 26 2.604152 CCGGCTAGGGAGAGGAGT 59.396 66.667 0.00 0.00 35.97 3.85
26 27 1.830408 CCGGCTAGGGAGAGGAGTG 60.830 68.421 0.00 0.00 35.97 3.51
27 28 1.830408 CGGCTAGGGAGAGGAGTGG 60.830 68.421 0.00 0.00 0.00 4.00
28 29 1.311747 GGCTAGGGAGAGGAGTGGT 59.688 63.158 0.00 0.00 0.00 4.16
29 30 1.045911 GGCTAGGGAGAGGAGTGGTG 61.046 65.000 0.00 0.00 0.00 4.17
30 31 0.033011 GCTAGGGAGAGGAGTGGTGA 60.033 60.000 0.00 0.00 0.00 4.02
31 32 1.619977 GCTAGGGAGAGGAGTGGTGAA 60.620 57.143 0.00 0.00 0.00 3.18
32 33 2.383855 CTAGGGAGAGGAGTGGTGAAG 58.616 57.143 0.00 0.00 0.00 3.02
33 34 0.489567 AGGGAGAGGAGTGGTGAAGT 59.510 55.000 0.00 0.00 0.00 3.01
34 35 0.610687 GGGAGAGGAGTGGTGAAGTG 59.389 60.000 0.00 0.00 0.00 3.16
35 36 0.036858 GGAGAGGAGTGGTGAAGTGC 60.037 60.000 0.00 0.00 0.00 4.40
36 37 0.681733 GAGAGGAGTGGTGAAGTGCA 59.318 55.000 0.00 0.00 0.00 4.57
37 38 1.070758 GAGAGGAGTGGTGAAGTGCAA 59.929 52.381 0.00 0.00 0.00 4.08
38 39 1.071385 AGAGGAGTGGTGAAGTGCAAG 59.929 52.381 0.00 0.00 0.00 4.01
39 40 0.109342 AGGAGTGGTGAAGTGCAAGG 59.891 55.000 0.00 0.00 0.00 3.61
40 41 0.179018 GGAGTGGTGAAGTGCAAGGT 60.179 55.000 0.00 0.00 0.00 3.50
41 42 0.947244 GAGTGGTGAAGTGCAAGGTG 59.053 55.000 0.00 0.00 0.00 4.00
42 43 0.255890 AGTGGTGAAGTGCAAGGTGT 59.744 50.000 0.00 0.00 0.00 4.16
43 44 1.102978 GTGGTGAAGTGCAAGGTGTT 58.897 50.000 0.00 0.00 0.00 3.32
44 45 1.102154 TGGTGAAGTGCAAGGTGTTG 58.898 50.000 0.00 0.00 36.67 3.33
53 54 3.575399 CAAGGTGTTGCTTGGCTTC 57.425 52.632 0.00 0.00 0.00 3.86
54 55 0.746063 CAAGGTGTTGCTTGGCTTCA 59.254 50.000 0.00 0.00 0.00 3.02
55 56 0.746659 AAGGTGTTGCTTGGCTTCAC 59.253 50.000 0.00 0.00 34.43 3.18
56 57 1.109323 AGGTGTTGCTTGGCTTCACC 61.109 55.000 19.61 19.61 45.17 4.02
57 58 1.008538 GTGTTGCTTGGCTTCACCG 60.009 57.895 0.00 0.00 43.94 4.94
58 59 1.153066 TGTTGCTTGGCTTCACCGA 60.153 52.632 0.00 0.00 43.94 4.69
59 60 1.282875 GTTGCTTGGCTTCACCGAC 59.717 57.895 0.00 0.00 43.94 4.79
60 61 1.153066 TTGCTTGGCTTCACCGACA 60.153 52.632 0.00 0.00 43.94 4.35
61 62 0.749818 TTGCTTGGCTTCACCGACAA 60.750 50.000 0.00 0.00 43.94 3.18
62 63 0.749818 TGCTTGGCTTCACCGACAAA 60.750 50.000 0.00 0.00 43.94 2.83
63 64 0.383949 GCTTGGCTTCACCGACAAAA 59.616 50.000 0.00 0.00 43.94 2.44
64 65 1.000274 GCTTGGCTTCACCGACAAAAT 60.000 47.619 0.00 0.00 43.94 1.82
65 66 2.227865 GCTTGGCTTCACCGACAAAATA 59.772 45.455 0.00 0.00 43.94 1.40
66 67 3.119495 GCTTGGCTTCACCGACAAAATAT 60.119 43.478 0.00 0.00 43.94 1.28
67 68 4.095782 GCTTGGCTTCACCGACAAAATATA 59.904 41.667 0.00 0.00 43.94 0.86
68 69 5.392595 GCTTGGCTTCACCGACAAAATATAA 60.393 40.000 0.00 0.00 43.94 0.98
69 70 5.554822 TGGCTTCACCGACAAAATATAAC 57.445 39.130 0.00 0.00 43.94 1.89
70 71 5.250200 TGGCTTCACCGACAAAATATAACT 58.750 37.500 0.00 0.00 43.94 2.24
71 72 5.123186 TGGCTTCACCGACAAAATATAACTG 59.877 40.000 0.00 0.00 43.94 3.16
72 73 5.448632 GGCTTCACCGACAAAATATAACTGG 60.449 44.000 0.00 0.00 0.00 4.00
73 74 5.448632 GCTTCACCGACAAAATATAACTGGG 60.449 44.000 0.00 0.00 0.00 4.45
74 75 3.942748 TCACCGACAAAATATAACTGGGC 59.057 43.478 0.00 0.00 0.00 5.36
75 76 3.066203 CACCGACAAAATATAACTGGGCC 59.934 47.826 0.00 0.00 0.00 5.80
76 77 3.283751 CCGACAAAATATAACTGGGCCA 58.716 45.455 5.85 5.85 0.00 5.36
77 78 3.697045 CCGACAAAATATAACTGGGCCAA 59.303 43.478 8.04 0.00 0.00 4.52
78 79 4.439563 CCGACAAAATATAACTGGGCCAAC 60.440 45.833 8.04 0.00 0.00 3.77
79 80 4.156922 CGACAAAATATAACTGGGCCAACA 59.843 41.667 8.04 0.00 0.00 3.33
80 81 5.163561 CGACAAAATATAACTGGGCCAACAT 60.164 40.000 8.04 3.43 0.00 2.71
81 82 6.220726 ACAAAATATAACTGGGCCAACATC 57.779 37.500 8.04 0.00 0.00 3.06
82 83 5.719085 ACAAAATATAACTGGGCCAACATCA 59.281 36.000 8.04 0.00 0.00 3.07
83 84 5.852282 AAATATAACTGGGCCAACATCAC 57.148 39.130 8.04 0.00 0.00 3.06
84 85 4.796110 ATATAACTGGGCCAACATCACT 57.204 40.909 8.04 0.00 0.00 3.41
85 86 2.489938 TAACTGGGCCAACATCACTC 57.510 50.000 8.04 0.00 0.00 3.51
86 87 0.606401 AACTGGGCCAACATCACTCG 60.606 55.000 8.04 0.00 0.00 4.18
87 88 2.359850 TGGGCCAACATCACTCGC 60.360 61.111 2.13 0.00 0.00 5.03
88 89 3.134127 GGGCCAACATCACTCGCC 61.134 66.667 4.39 0.00 38.96 5.54
89 90 2.359850 GGCCAACATCACTCGCCA 60.360 61.111 0.00 0.00 39.50 5.69
90 91 1.971167 GGCCAACATCACTCGCCAA 60.971 57.895 0.00 0.00 39.50 4.52
91 92 1.523154 GGCCAACATCACTCGCCAAA 61.523 55.000 0.00 0.00 39.50 3.28
92 93 0.313672 GCCAACATCACTCGCCAAAA 59.686 50.000 0.00 0.00 0.00 2.44
93 94 1.067635 GCCAACATCACTCGCCAAAAT 60.068 47.619 0.00 0.00 0.00 1.82
94 95 2.163412 GCCAACATCACTCGCCAAAATA 59.837 45.455 0.00 0.00 0.00 1.40
95 96 3.758300 CCAACATCACTCGCCAAAATAC 58.242 45.455 0.00 0.00 0.00 1.89
96 97 3.440173 CCAACATCACTCGCCAAAATACT 59.560 43.478 0.00 0.00 0.00 2.12
97 98 4.437390 CCAACATCACTCGCCAAAATACTC 60.437 45.833 0.00 0.00 0.00 2.59
98 99 3.270877 ACATCACTCGCCAAAATACTCC 58.729 45.455 0.00 0.00 0.00 3.85
99 100 2.396590 TCACTCGCCAAAATACTCCC 57.603 50.000 0.00 0.00 0.00 4.30
100 101 1.065709 TCACTCGCCAAAATACTCCCC 60.066 52.381 0.00 0.00 0.00 4.81
101 102 0.988832 ACTCGCCAAAATACTCCCCA 59.011 50.000 0.00 0.00 0.00 4.96
102 103 1.339727 ACTCGCCAAAATACTCCCCAC 60.340 52.381 0.00 0.00 0.00 4.61
103 104 0.034863 TCGCCAAAATACTCCCCACC 60.035 55.000 0.00 0.00 0.00 4.61
104 105 1.035385 CGCCAAAATACTCCCCACCC 61.035 60.000 0.00 0.00 0.00 4.61
105 106 1.035385 GCCAAAATACTCCCCACCCG 61.035 60.000 0.00 0.00 0.00 5.28
106 107 1.035385 CCAAAATACTCCCCACCCGC 61.035 60.000 0.00 0.00 0.00 6.13
107 108 1.035385 CAAAATACTCCCCACCCGCC 61.035 60.000 0.00 0.00 0.00 6.13
108 109 2.219449 AAAATACTCCCCACCCGCCC 62.219 60.000 0.00 0.00 0.00 6.13
109 110 3.954740 AATACTCCCCACCCGCCCA 62.955 63.158 0.00 0.00 0.00 5.36
119 120 4.920112 CCCGCCCACACGACACAA 62.920 66.667 0.00 0.00 34.06 3.33
120 121 3.345808 CCGCCCACACGACACAAG 61.346 66.667 0.00 0.00 34.06 3.16
121 122 2.587753 CGCCCACACGACACAAGT 60.588 61.111 0.00 0.00 34.06 3.16
122 123 2.881266 CGCCCACACGACACAAGTG 61.881 63.158 0.00 0.00 44.57 3.16
123 124 3.022287 CCCACACGACACAAGTGC 58.978 61.111 0.00 0.00 42.94 4.40
124 125 1.817520 CCCACACGACACAAGTGCA 60.818 57.895 0.00 0.00 42.94 4.57
125 126 1.372838 CCCACACGACACAAGTGCAA 61.373 55.000 0.00 0.00 42.94 4.08
126 127 0.248054 CCACACGACACAAGTGCAAC 60.248 55.000 0.00 0.00 42.94 4.17
127 128 0.586256 CACACGACACAAGTGCAACG 60.586 55.000 0.00 6.78 45.86 4.10
128 129 0.738063 ACACGACACAAGTGCAACGA 60.738 50.000 16.91 0.00 45.86 3.85
129 130 0.043053 CACGACACAAGTGCAACGAG 60.043 55.000 16.91 8.96 45.86 4.18
130 131 1.083401 CGACACAAGTGCAACGAGC 60.083 57.895 0.00 0.00 45.86 5.03
139 140 4.487412 GCAACGAGCATGCTGGCC 62.487 66.667 28.27 10.16 44.79 5.36
140 141 2.749044 CAACGAGCATGCTGGCCT 60.749 61.111 28.27 12.15 0.00 5.19
141 142 2.437359 AACGAGCATGCTGGCCTC 60.437 61.111 28.27 9.59 0.00 4.70
142 143 3.258228 AACGAGCATGCTGGCCTCA 62.258 57.895 28.27 1.86 0.00 3.86
143 144 2.895865 CGAGCATGCTGGCCTCAG 60.896 66.667 28.27 3.38 43.64 3.35
144 145 2.271497 GAGCATGCTGGCCTCAGT 59.729 61.111 28.27 0.00 42.78 3.41
145 146 1.818785 GAGCATGCTGGCCTCAGTC 60.819 63.158 28.27 3.09 42.78 3.51
146 147 2.254737 GAGCATGCTGGCCTCAGTCT 62.255 60.000 28.27 0.00 42.78 3.24
147 148 1.818785 GCATGCTGGCCTCAGTCTC 60.819 63.158 11.37 0.00 42.78 3.36
148 149 1.153208 CATGCTGGCCTCAGTCTCC 60.153 63.158 3.32 0.00 42.78 3.71
149 150 2.729479 ATGCTGGCCTCAGTCTCCG 61.729 63.158 3.32 0.00 42.78 4.63
150 151 4.154347 GCTGGCCTCAGTCTCCGG 62.154 72.222 3.32 0.00 42.78 5.14
151 152 2.363018 CTGGCCTCAGTCTCCGGA 60.363 66.667 2.93 2.93 36.30 5.14
152 153 2.363018 TGGCCTCAGTCTCCGGAG 60.363 66.667 26.32 26.32 33.25 4.63
153 154 3.844090 GGCCTCAGTCTCCGGAGC 61.844 72.222 27.39 20.68 32.24 4.70
154 155 2.757917 GCCTCAGTCTCCGGAGCT 60.758 66.667 27.39 22.56 32.24 4.09
155 156 2.781158 GCCTCAGTCTCCGGAGCTC 61.781 68.421 27.39 20.48 32.24 4.09
156 157 2.477176 CCTCAGTCTCCGGAGCTCG 61.477 68.421 27.39 16.14 32.24 5.03
157 158 1.450491 CTCAGTCTCCGGAGCTCGA 60.450 63.158 27.39 19.30 42.43 4.04
158 159 1.436195 CTCAGTCTCCGGAGCTCGAG 61.436 65.000 27.39 23.91 42.43 4.04
159 160 2.124487 AGTCTCCGGAGCTCGAGG 60.124 66.667 27.39 17.83 42.43 4.63
160 161 2.438795 GTCTCCGGAGCTCGAGGT 60.439 66.667 27.39 18.67 42.43 3.85
161 162 2.438614 TCTCCGGAGCTCGAGGTG 60.439 66.667 27.39 19.50 42.43 4.00
162 163 2.752238 CTCCGGAGCTCGAGGTGT 60.752 66.667 23.97 0.00 42.43 4.16
163 164 3.057547 CTCCGGAGCTCGAGGTGTG 62.058 68.421 23.97 13.51 42.43 3.82
164 165 4.803426 CCGGAGCTCGAGGTGTGC 62.803 72.222 23.97 7.61 42.43 4.57
166 167 2.125753 GGAGCTCGAGGTGTGCTG 60.126 66.667 23.97 0.00 46.85 4.41
167 168 2.813042 GAGCTCGAGGTGTGCTGC 60.813 66.667 23.97 2.00 46.85 5.25
168 169 4.731612 AGCTCGAGGTGTGCTGCG 62.732 66.667 17.85 0.00 45.26 5.18
170 171 4.363990 CTCGAGGTGTGCTGCGGT 62.364 66.667 3.91 0.00 0.00 5.68
171 172 4.662961 TCGAGGTGTGCTGCGGTG 62.663 66.667 0.00 0.00 0.00 4.94
189 190 2.590007 CAGGGCCTGCTCGTATGC 60.590 66.667 22.68 0.00 0.00 3.14
190 191 3.866582 AGGGCCTGCTCGTATGCC 61.867 66.667 4.50 0.00 43.26 4.40
192 193 3.866582 GGCCTGCTCGTATGCCCT 61.867 66.667 0.00 0.00 37.94 5.19
193 194 2.590007 GCCTGCTCGTATGCCCTG 60.590 66.667 0.00 0.00 0.00 4.45
194 195 2.590007 CCTGCTCGTATGCCCTGC 60.590 66.667 0.00 0.00 0.00 4.85
195 196 2.503061 CTGCTCGTATGCCCTGCT 59.497 61.111 0.00 0.00 0.00 4.24
196 197 1.886313 CTGCTCGTATGCCCTGCTG 60.886 63.158 0.00 0.00 0.00 4.41
197 198 3.275338 GCTCGTATGCCCTGCTGC 61.275 66.667 0.00 0.00 0.00 5.25
198 199 2.503061 CTCGTATGCCCTGCTGCT 59.497 61.111 0.00 0.00 0.00 4.24
199 200 1.153289 CTCGTATGCCCTGCTGCTT 60.153 57.895 0.00 0.00 0.00 3.91
200 201 1.153369 TCGTATGCCCTGCTGCTTC 60.153 57.895 0.00 0.00 0.00 3.86
201 202 2.528743 CGTATGCCCTGCTGCTTCG 61.529 63.158 0.00 0.00 0.00 3.79
202 203 2.514592 TATGCCCTGCTGCTTCGC 60.515 61.111 0.00 0.00 0.00 4.70
203 204 3.035173 TATGCCCTGCTGCTTCGCT 62.035 57.895 0.00 0.00 0.00 4.93
210 211 3.497932 GCTGCTTCGCTGGAGCTG 61.498 66.667 12.14 9.88 45.86 4.24
211 212 3.497932 CTGCTTCGCTGGAGCTGC 61.498 66.667 0.00 0.00 39.32 5.25
212 213 3.954465 CTGCTTCGCTGGAGCTGCT 62.954 63.158 6.82 0.00 39.32 4.24
213 214 2.745492 GCTTCGCTGGAGCTGCTT 60.745 61.111 6.82 0.00 39.32 3.91
214 215 2.748843 GCTTCGCTGGAGCTGCTTC 61.749 63.158 6.82 0.96 39.32 3.86
215 216 2.433145 TTCGCTGGAGCTGCTTCG 60.433 61.111 6.82 9.93 39.32 3.79
216 217 2.825726 CTTCGCTGGAGCTGCTTCGA 62.826 60.000 15.54 15.54 39.32 3.71
217 218 2.202851 CGCTGGAGCTGCTTCGAT 60.203 61.111 6.82 0.00 39.32 3.59
218 219 2.523507 CGCTGGAGCTGCTTCGATG 61.524 63.158 6.82 0.00 39.32 3.84
219 220 1.449246 GCTGGAGCTGCTTCGATGT 60.449 57.895 6.82 0.00 38.21 3.06
220 221 1.703438 GCTGGAGCTGCTTCGATGTG 61.703 60.000 6.82 0.00 38.21 3.21
221 222 1.078918 TGGAGCTGCTTCGATGTGG 60.079 57.895 6.82 0.00 0.00 4.17
222 223 1.219124 GGAGCTGCTTCGATGTGGA 59.781 57.895 2.53 0.00 0.00 4.02
223 224 0.179062 GGAGCTGCTTCGATGTGGAT 60.179 55.000 2.53 0.00 0.00 3.41
224 225 1.216122 GAGCTGCTTCGATGTGGATC 58.784 55.000 2.53 0.00 0.00 3.36
225 226 0.179062 AGCTGCTTCGATGTGGATCC 60.179 55.000 4.20 4.20 0.00 3.36
226 227 1.493950 GCTGCTTCGATGTGGATCCG 61.494 60.000 7.39 0.00 0.00 4.18
227 228 0.877649 CTGCTTCGATGTGGATCCGG 60.878 60.000 7.39 0.00 0.00 5.14
228 229 2.247437 GCTTCGATGTGGATCCGGC 61.247 63.158 7.39 3.05 0.00 6.13
229 230 1.595382 CTTCGATGTGGATCCGGCC 60.595 63.158 7.39 0.00 0.00 6.13
230 231 3.439513 TTCGATGTGGATCCGGCCG 62.440 63.158 21.04 21.04 0.00 6.13
231 232 4.221422 CGATGTGGATCCGGCCGT 62.221 66.667 26.12 6.07 0.00 5.68
232 233 2.189521 GATGTGGATCCGGCCGTT 59.810 61.111 26.12 11.50 0.00 4.44
233 234 2.124736 ATGTGGATCCGGCCGTTG 60.125 61.111 26.12 10.11 0.00 4.10
234 235 3.697439 ATGTGGATCCGGCCGTTGG 62.697 63.158 26.12 9.25 0.00 3.77
235 236 4.404098 GTGGATCCGGCCGTTGGT 62.404 66.667 26.12 5.42 0.00 3.67
236 237 4.402528 TGGATCCGGCCGTTGGTG 62.403 66.667 26.12 8.39 0.00 4.17
238 239 4.404098 GATCCGGCCGTTGGTGGT 62.404 66.667 26.12 3.57 0.00 4.16
239 240 3.912745 GATCCGGCCGTTGGTGGTT 62.913 63.158 26.12 1.85 0.00 3.67
240 241 3.912745 ATCCGGCCGTTGGTGGTTC 62.913 63.158 26.12 0.00 0.00 3.62
244 245 4.025401 GCCGTTGGTGGTTCGCTG 62.025 66.667 0.00 0.00 0.00 5.18
245 246 2.280524 CCGTTGGTGGTTCGCTGA 60.281 61.111 0.00 0.00 0.00 4.26
246 247 1.671054 CCGTTGGTGGTTCGCTGAT 60.671 57.895 0.00 0.00 0.00 2.90
247 248 1.635663 CCGTTGGTGGTTCGCTGATC 61.636 60.000 0.00 0.00 0.00 2.92
248 249 0.670546 CGTTGGTGGTTCGCTGATCT 60.671 55.000 0.00 0.00 0.00 2.75
249 250 1.523758 GTTGGTGGTTCGCTGATCTT 58.476 50.000 0.00 0.00 0.00 2.40
250 251 1.197721 GTTGGTGGTTCGCTGATCTTG 59.802 52.381 0.00 0.00 0.00 3.02
251 252 0.321564 TGGTGGTTCGCTGATCTTGG 60.322 55.000 0.00 0.00 0.00 3.61
252 253 1.648467 GGTGGTTCGCTGATCTTGGC 61.648 60.000 0.00 0.00 0.00 4.52
257 258 4.233635 CGCTGATCTTGGCGCTGC 62.234 66.667 7.64 0.00 44.64 5.25
258 259 2.823147 GCTGATCTTGGCGCTGCT 60.823 61.111 7.64 0.00 0.00 4.24
259 260 2.404995 GCTGATCTTGGCGCTGCTT 61.405 57.895 7.64 0.00 0.00 3.91
260 261 1.930908 GCTGATCTTGGCGCTGCTTT 61.931 55.000 7.64 0.00 0.00 3.51
261 262 0.524862 CTGATCTTGGCGCTGCTTTT 59.475 50.000 7.64 0.00 0.00 2.27
262 263 0.961019 TGATCTTGGCGCTGCTTTTT 59.039 45.000 7.64 0.00 0.00 1.94
263 264 1.336148 TGATCTTGGCGCTGCTTTTTG 60.336 47.619 7.64 0.00 0.00 2.44
264 265 0.668401 ATCTTGGCGCTGCTTTTTGC 60.668 50.000 7.64 0.00 43.25 3.68
274 275 3.732788 GCTTTTTGCAATGCGTTGG 57.267 47.368 19.93 3.58 42.31 3.77
275 276 0.936600 GCTTTTTGCAATGCGTTGGT 59.063 45.000 19.93 0.00 42.31 3.67
276 277 1.330213 GCTTTTTGCAATGCGTTGGTT 59.670 42.857 19.93 0.00 42.31 3.67
277 278 2.850254 GCTTTTTGCAATGCGTTGGTTG 60.850 45.455 19.93 0.00 42.31 3.77
280 281 3.541191 GCAATGCGTTGGTTGCTG 58.459 55.556 19.93 0.00 45.41 4.41
281 282 2.660612 GCAATGCGTTGGTTGCTGC 61.661 57.895 19.93 0.53 45.41 5.25
282 283 2.050168 AATGCGTTGGTTGCTGCG 60.050 55.556 0.00 0.00 0.00 5.18
283 284 3.556543 AATGCGTTGGTTGCTGCGG 62.557 57.895 0.00 0.00 0.00 5.69
285 286 4.980903 GCGTTGGTTGCTGCGGTG 62.981 66.667 0.00 0.00 0.00 4.94
286 287 4.326766 CGTTGGTTGCTGCGGTGG 62.327 66.667 0.00 0.00 0.00 4.61
287 288 3.216292 GTTGGTTGCTGCGGTGGT 61.216 61.111 0.00 0.00 0.00 4.16
288 289 3.215568 TTGGTTGCTGCGGTGGTG 61.216 61.111 0.00 0.00 0.00 4.17
291 292 4.332637 GTTGCTGCGGTGGTGCTG 62.333 66.667 0.00 0.00 36.93 4.41
295 296 4.624364 CTGCGGTGGTGCTGGTCA 62.624 66.667 0.00 0.00 35.36 4.02
296 297 4.927782 TGCGGTGGTGCTGGTCAC 62.928 66.667 0.00 0.00 44.90 3.67
299 300 4.250305 GGTGGTGCTGGTCACGGT 62.250 66.667 0.00 0.00 46.56 4.83
300 301 2.972505 GTGGTGCTGGTCACGGTG 60.973 66.667 0.56 0.56 46.56 4.94
301 302 4.248842 TGGTGCTGGTCACGGTGG 62.249 66.667 8.50 0.00 46.56 4.61
303 304 3.936203 GTGCTGGTCACGGTGGGA 61.936 66.667 8.50 0.00 35.76 4.37
304 305 2.927856 TGCTGGTCACGGTGGGAT 60.928 61.111 8.50 0.00 0.00 3.85
305 306 2.125106 GCTGGTCACGGTGGGATC 60.125 66.667 8.50 0.00 0.00 3.36
306 307 2.954684 GCTGGTCACGGTGGGATCA 61.955 63.158 8.50 0.00 0.00 2.92
307 308 1.907739 CTGGTCACGGTGGGATCAT 59.092 57.895 8.50 0.00 0.00 2.45
308 309 0.462581 CTGGTCACGGTGGGATCATG 60.463 60.000 8.50 0.00 0.00 3.07
309 310 1.153168 GGTCACGGTGGGATCATGG 60.153 63.158 8.50 0.00 0.00 3.66
310 311 1.153168 GTCACGGTGGGATCATGGG 60.153 63.158 8.50 0.00 0.00 4.00
311 312 1.306568 TCACGGTGGGATCATGGGA 60.307 57.895 8.50 0.00 0.00 4.37
312 313 0.694105 TCACGGTGGGATCATGGGAT 60.694 55.000 8.50 0.00 36.13 3.85
319 320 4.709840 GATCATGGGATCCCGCAG 57.290 61.111 26.03 17.35 43.44 5.18
320 321 1.673665 GATCATGGGATCCCGCAGC 60.674 63.158 26.03 10.97 43.44 5.25
321 322 3.201707 ATCATGGGATCCCGCAGCC 62.202 63.158 26.03 1.02 38.67 4.85
322 323 4.193893 CATGGGATCCCGCAGCCA 62.194 66.667 26.03 7.56 38.67 4.75
323 324 3.882326 ATGGGATCCCGCAGCCAG 61.882 66.667 26.03 0.00 38.67 4.85
353 354 3.402681 CTCGGCAGGGGTGGTGAT 61.403 66.667 0.00 0.00 0.00 3.06
354 355 2.933287 TCGGCAGGGGTGGTGATT 60.933 61.111 0.00 0.00 0.00 2.57
355 356 2.751436 CGGCAGGGGTGGTGATTG 60.751 66.667 0.00 0.00 0.00 2.67
356 357 2.362889 GGCAGGGGTGGTGATTGG 60.363 66.667 0.00 0.00 0.00 3.16
357 358 2.440599 GCAGGGGTGGTGATTGGT 59.559 61.111 0.00 0.00 0.00 3.67
358 359 1.978617 GCAGGGGTGGTGATTGGTG 60.979 63.158 0.00 0.00 0.00 4.17
359 360 1.304381 CAGGGGTGGTGATTGGTGG 60.304 63.158 0.00 0.00 0.00 4.61
360 361 2.037208 GGGGTGGTGATTGGTGGG 59.963 66.667 0.00 0.00 0.00 4.61
361 362 2.679996 GGGTGGTGATTGGTGGGC 60.680 66.667 0.00 0.00 0.00 5.36
362 363 3.061848 GGTGGTGATTGGTGGGCG 61.062 66.667 0.00 0.00 0.00 6.13
363 364 3.061848 GTGGTGATTGGTGGGCGG 61.062 66.667 0.00 0.00 0.00 6.13
393 394 2.678934 CGGTGGTCTCCGGGAGAA 60.679 66.667 27.60 11.33 45.88 2.87
394 395 2.280552 CGGTGGTCTCCGGGAGAAA 61.281 63.158 27.60 16.39 45.88 2.52
395 396 1.614241 CGGTGGTCTCCGGGAGAAAT 61.614 60.000 27.60 0.00 45.88 2.17
396 397 0.178301 GGTGGTCTCCGGGAGAAATC 59.822 60.000 27.60 19.20 40.59 2.17
397 398 1.196012 GTGGTCTCCGGGAGAAATCT 58.804 55.000 27.60 0.00 40.59 2.40
398 399 1.555533 GTGGTCTCCGGGAGAAATCTT 59.444 52.381 27.60 0.00 40.59 2.40
399 400 2.027100 GTGGTCTCCGGGAGAAATCTTT 60.027 50.000 27.60 0.00 40.59 2.52
400 401 2.027192 TGGTCTCCGGGAGAAATCTTTG 60.027 50.000 27.60 0.00 40.59 2.77
401 402 2.010497 GTCTCCGGGAGAAATCTTTGC 58.990 52.381 27.60 9.58 40.59 3.68
402 403 1.909302 TCTCCGGGAGAAATCTTTGCT 59.091 47.619 24.17 0.00 35.59 3.91
403 404 2.093447 TCTCCGGGAGAAATCTTTGCTC 60.093 50.000 24.17 0.00 35.59 4.26
404 405 1.065418 TCCGGGAGAAATCTTTGCTCC 60.065 52.381 0.00 5.80 45.88 4.70
409 410 3.949132 GGAGAAATCTTTGCTCCAGTCT 58.051 45.455 9.07 0.00 45.89 3.24
410 411 4.331108 GGAGAAATCTTTGCTCCAGTCTT 58.669 43.478 9.07 0.00 45.89 3.01
411 412 5.491982 GGAGAAATCTTTGCTCCAGTCTTA 58.508 41.667 9.07 0.00 45.89 2.10
412 413 6.118852 GGAGAAATCTTTGCTCCAGTCTTAT 58.881 40.000 9.07 0.00 45.89 1.73
413 414 6.259829 GGAGAAATCTTTGCTCCAGTCTTATC 59.740 42.308 9.07 0.00 45.89 1.75
414 415 5.814705 AGAAATCTTTGCTCCAGTCTTATCG 59.185 40.000 0.00 0.00 0.00 2.92
415 416 3.526931 TCTTTGCTCCAGTCTTATCGG 57.473 47.619 0.00 0.00 0.00 4.18
416 417 3.096852 TCTTTGCTCCAGTCTTATCGGA 58.903 45.455 0.00 0.00 0.00 4.55
418 419 2.145397 TGCTCCAGTCTTATCGGAGT 57.855 50.000 6.55 0.00 46.74 3.85
419 420 2.457598 TGCTCCAGTCTTATCGGAGTT 58.542 47.619 6.55 0.00 46.74 3.01
420 421 2.166459 TGCTCCAGTCTTATCGGAGTTG 59.834 50.000 6.55 0.00 46.74 3.16
421 422 2.482142 GCTCCAGTCTTATCGGAGTTGG 60.482 54.545 6.55 0.00 46.74 3.77
422 423 1.480954 TCCAGTCTTATCGGAGTTGGC 59.519 52.381 0.00 0.00 0.00 4.52
423 424 1.560923 CAGTCTTATCGGAGTTGGCG 58.439 55.000 0.00 0.00 0.00 5.69
424 425 1.134367 CAGTCTTATCGGAGTTGGCGA 59.866 52.381 0.00 0.00 0.00 5.54
425 426 1.134560 AGTCTTATCGGAGTTGGCGAC 59.865 52.381 0.00 0.00 0.00 5.19
426 427 0.099968 TCTTATCGGAGTTGGCGACG 59.900 55.000 0.00 0.00 0.00 5.12
427 428 0.870307 CTTATCGGAGTTGGCGACGG 60.870 60.000 0.00 0.00 0.00 4.79
428 429 2.894240 TTATCGGAGTTGGCGACGGC 62.894 60.000 15.43 15.43 38.90 5.68
454 455 2.593436 CGGGTGCCGTGGTCTTTT 60.593 61.111 0.00 0.00 42.73 2.27
455 456 2.190841 CGGGTGCCGTGGTCTTTTT 61.191 57.895 0.00 0.00 42.73 1.94
476 477 5.664294 TTTGGAAAACATCATCATGGAGG 57.336 39.130 0.00 0.00 33.82 4.30
477 478 4.320546 TGGAAAACATCATCATGGAGGT 57.679 40.909 0.00 0.00 33.82 3.85
478 479 4.018490 TGGAAAACATCATCATGGAGGTG 58.982 43.478 0.00 0.00 31.31 4.00
479 480 4.019174 GGAAAACATCATCATGGAGGTGT 58.981 43.478 0.00 0.00 31.31 4.16
480 481 4.142315 GGAAAACATCATCATGGAGGTGTG 60.142 45.833 5.21 0.00 31.31 3.82
481 482 2.048444 ACATCATCATGGAGGTGTGC 57.952 50.000 3.82 0.00 33.82 4.57
482 483 1.562942 ACATCATCATGGAGGTGTGCT 59.437 47.619 3.82 0.00 33.82 4.40
569 571 2.432510 CCTCGGGACTGATTTTCTAGCT 59.567 50.000 0.00 0.00 0.00 3.32
594 596 6.118852 GTCTTTCCTGCTTCCTATTCAATCT 58.881 40.000 0.00 0.00 0.00 2.40
635 645 0.953960 ACACCCGACGAATTTGCCTC 60.954 55.000 0.00 0.00 0.00 4.70
650 660 1.153086 CCTCGGAGGCTGAATTGGG 60.153 63.158 11.83 0.00 0.00 4.12
655 665 1.417890 CGGAGGCTGAATTGGGAGTAT 59.582 52.381 0.00 0.00 0.00 2.12
735 745 6.407074 GGCAGAGTTGACACATAACTACCTAT 60.407 42.308 0.00 0.00 38.42 2.57
754 764 6.012745 ACCTATTTTGCCTCTTTTGTCTGAT 58.987 36.000 0.00 0.00 0.00 2.90
867 877 1.666553 GCAACGGACGATGGACACA 60.667 57.895 0.00 0.00 0.00 3.72
894 904 1.885163 CGGCCGTTAGGTCTCCTTGT 61.885 60.000 19.50 0.00 40.84 3.16
1017 1056 1.971357 GACATGGTATCGTGGGGAGAT 59.029 52.381 0.00 0.00 34.31 2.75
1108 1287 4.041198 ACGGTTAGGGTTTCTCTGATTTGA 59.959 41.667 0.00 0.00 0.00 2.69
2060 3638 5.624344 ATGAAGTGAAGTGATTTGCTGAG 57.376 39.130 0.00 0.00 0.00 3.35
2580 7988 5.703592 TGGTAGTTTTGCGTCATTTACTCAT 59.296 36.000 0.00 0.00 0.00 2.90
2581 7989 6.205853 TGGTAGTTTTGCGTCATTTACTCATT 59.794 34.615 0.00 0.00 0.00 2.57
2582 7990 7.081976 GGTAGTTTTGCGTCATTTACTCATTT 58.918 34.615 0.00 0.00 0.00 2.32
2583 7991 7.593644 GGTAGTTTTGCGTCATTTACTCATTTT 59.406 33.333 0.00 0.00 0.00 1.82
2584 7992 8.964150 GTAGTTTTGCGTCATTTACTCATTTTT 58.036 29.630 0.00 0.00 0.00 1.94
2586 7994 9.180678 AGTTTTGCGTCATTTACTCATTTTTAG 57.819 29.630 0.00 0.00 0.00 1.85
2587 7995 9.176181 GTTTTGCGTCATTTACTCATTTTTAGA 57.824 29.630 0.00 0.00 0.00 2.10
2588 7996 8.948853 TTTGCGTCATTTACTCATTTTTAGAG 57.051 30.769 0.00 0.00 39.04 2.43
2589 7997 7.899178 TGCGTCATTTACTCATTTTTAGAGA 57.101 32.000 0.00 0.00 36.91 3.10
2646 8055 3.595190 TCCCTGACTAGTGCTAGCATA 57.405 47.619 22.51 12.84 36.66 3.14
2737 8148 6.187125 TCAGTTAAATGAGAAAGCATCTGC 57.813 37.500 0.56 0.00 38.96 4.26
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 4.896829 TCCTCTCCCTAGCCGGCG 62.897 72.222 23.20 7.72 0.00 6.46
7 8 2.915137 CTCCTCTCCCTAGCCGGC 60.915 72.222 21.89 21.89 0.00 6.13
8 9 1.830408 CACTCCTCTCCCTAGCCGG 60.830 68.421 0.00 0.00 0.00 6.13
9 10 1.830408 CCACTCCTCTCCCTAGCCG 60.830 68.421 0.00 0.00 0.00 5.52
10 11 1.045911 CACCACTCCTCTCCCTAGCC 61.046 65.000 0.00 0.00 0.00 3.93
11 12 0.033011 TCACCACTCCTCTCCCTAGC 60.033 60.000 0.00 0.00 0.00 3.42
12 13 2.291930 ACTTCACCACTCCTCTCCCTAG 60.292 54.545 0.00 0.00 0.00 3.02
13 14 1.717077 ACTTCACCACTCCTCTCCCTA 59.283 52.381 0.00 0.00 0.00 3.53
14 15 0.489567 ACTTCACCACTCCTCTCCCT 59.510 55.000 0.00 0.00 0.00 4.20
15 16 0.610687 CACTTCACCACTCCTCTCCC 59.389 60.000 0.00 0.00 0.00 4.30
16 17 0.036858 GCACTTCACCACTCCTCTCC 60.037 60.000 0.00 0.00 0.00 3.71
17 18 0.681733 TGCACTTCACCACTCCTCTC 59.318 55.000 0.00 0.00 0.00 3.20
18 19 1.071385 CTTGCACTTCACCACTCCTCT 59.929 52.381 0.00 0.00 0.00 3.69
19 20 1.517242 CTTGCACTTCACCACTCCTC 58.483 55.000 0.00 0.00 0.00 3.71
20 21 0.109342 CCTTGCACTTCACCACTCCT 59.891 55.000 0.00 0.00 0.00 3.69
21 22 0.179018 ACCTTGCACTTCACCACTCC 60.179 55.000 0.00 0.00 0.00 3.85
22 23 0.947244 CACCTTGCACTTCACCACTC 59.053 55.000 0.00 0.00 0.00 3.51
23 24 0.255890 ACACCTTGCACTTCACCACT 59.744 50.000 0.00 0.00 0.00 4.00
24 25 1.102978 AACACCTTGCACTTCACCAC 58.897 50.000 0.00 0.00 0.00 4.16
25 26 1.102154 CAACACCTTGCACTTCACCA 58.898 50.000 0.00 0.00 0.00 4.17
26 27 3.944871 CAACACCTTGCACTTCACC 57.055 52.632 0.00 0.00 0.00 4.02
35 36 0.746063 TGAAGCCAAGCAACACCTTG 59.254 50.000 0.00 0.00 41.40 3.61
36 37 0.746659 GTGAAGCCAAGCAACACCTT 59.253 50.000 0.00 0.00 33.54 3.50
37 38 1.109323 GGTGAAGCCAAGCAACACCT 61.109 55.000 20.08 0.00 45.52 4.00
38 39 1.363807 GGTGAAGCCAAGCAACACC 59.636 57.895 15.42 15.42 44.11 4.16
39 40 1.008538 CGGTGAAGCCAAGCAACAC 60.009 57.895 7.34 7.34 36.65 3.32
40 41 1.153066 TCGGTGAAGCCAAGCAACA 60.153 52.632 0.00 0.00 36.97 3.33
41 42 1.282875 GTCGGTGAAGCCAAGCAAC 59.717 57.895 0.00 0.00 36.97 4.17
42 43 0.749818 TTGTCGGTGAAGCCAAGCAA 60.750 50.000 0.00 0.00 36.97 3.91
43 44 0.749818 TTTGTCGGTGAAGCCAAGCA 60.750 50.000 0.00 0.00 36.97 3.91
44 45 0.383949 TTTTGTCGGTGAAGCCAAGC 59.616 50.000 0.00 0.00 36.97 4.01
45 46 4.701956 ATATTTTGTCGGTGAAGCCAAG 57.298 40.909 0.00 0.00 36.97 3.61
46 47 5.708230 AGTTATATTTTGTCGGTGAAGCCAA 59.292 36.000 0.00 0.00 36.97 4.52
47 48 5.123186 CAGTTATATTTTGTCGGTGAAGCCA 59.877 40.000 0.00 0.00 36.97 4.75
48 49 5.448632 CCAGTTATATTTTGTCGGTGAAGCC 60.449 44.000 0.00 0.00 0.00 4.35
49 50 5.448632 CCCAGTTATATTTTGTCGGTGAAGC 60.449 44.000 0.00 0.00 0.00 3.86
50 51 5.448632 GCCCAGTTATATTTTGTCGGTGAAG 60.449 44.000 0.00 0.00 0.00 3.02
51 52 4.396790 GCCCAGTTATATTTTGTCGGTGAA 59.603 41.667 0.00 0.00 0.00 3.18
52 53 3.942748 GCCCAGTTATATTTTGTCGGTGA 59.057 43.478 0.00 0.00 0.00 4.02
53 54 3.066203 GGCCCAGTTATATTTTGTCGGTG 59.934 47.826 0.00 0.00 0.00 4.94
54 55 3.284617 GGCCCAGTTATATTTTGTCGGT 58.715 45.455 0.00 0.00 0.00 4.69
55 56 3.283751 TGGCCCAGTTATATTTTGTCGG 58.716 45.455 0.00 0.00 0.00 4.79
56 57 4.156922 TGTTGGCCCAGTTATATTTTGTCG 59.843 41.667 0.00 0.00 0.00 4.35
57 58 5.652994 TGTTGGCCCAGTTATATTTTGTC 57.347 39.130 0.00 0.00 0.00 3.18
58 59 5.719085 TGATGTTGGCCCAGTTATATTTTGT 59.281 36.000 0.00 0.00 0.00 2.83
59 60 6.042143 GTGATGTTGGCCCAGTTATATTTTG 58.958 40.000 0.00 0.00 0.00 2.44
60 61 5.957774 AGTGATGTTGGCCCAGTTATATTTT 59.042 36.000 0.00 0.00 0.00 1.82
61 62 5.518865 AGTGATGTTGGCCCAGTTATATTT 58.481 37.500 0.00 0.00 0.00 1.40
62 63 5.129368 AGTGATGTTGGCCCAGTTATATT 57.871 39.130 0.00 0.00 0.00 1.28
63 64 4.718961 GAGTGATGTTGGCCCAGTTATAT 58.281 43.478 0.00 0.00 0.00 0.86
64 65 3.431626 CGAGTGATGTTGGCCCAGTTATA 60.432 47.826 0.00 0.00 0.00 0.98
65 66 2.680805 CGAGTGATGTTGGCCCAGTTAT 60.681 50.000 0.00 0.00 0.00 1.89
66 67 1.338674 CGAGTGATGTTGGCCCAGTTA 60.339 52.381 0.00 0.00 0.00 2.24
67 68 0.606401 CGAGTGATGTTGGCCCAGTT 60.606 55.000 0.00 0.00 0.00 3.16
68 69 1.003355 CGAGTGATGTTGGCCCAGT 60.003 57.895 0.00 0.00 0.00 4.00
69 70 2.401766 GCGAGTGATGTTGGCCCAG 61.402 63.158 0.00 0.00 0.00 4.45
70 71 2.359850 GCGAGTGATGTTGGCCCA 60.360 61.111 0.00 0.00 0.00 5.36
71 72 3.134127 GGCGAGTGATGTTGGCCC 61.134 66.667 0.00 0.00 37.82 5.80
72 73 1.523154 TTTGGCGAGTGATGTTGGCC 61.523 55.000 0.00 0.00 44.00 5.36
73 74 0.313672 TTTTGGCGAGTGATGTTGGC 59.686 50.000 0.00 0.00 0.00 4.52
74 75 3.440173 AGTATTTTGGCGAGTGATGTTGG 59.560 43.478 0.00 0.00 0.00 3.77
75 76 4.437390 GGAGTATTTTGGCGAGTGATGTTG 60.437 45.833 0.00 0.00 0.00 3.33
76 77 3.689649 GGAGTATTTTGGCGAGTGATGTT 59.310 43.478 0.00 0.00 0.00 2.71
77 78 3.270877 GGAGTATTTTGGCGAGTGATGT 58.729 45.455 0.00 0.00 0.00 3.06
78 79 2.614057 GGGAGTATTTTGGCGAGTGATG 59.386 50.000 0.00 0.00 0.00 3.07
79 80 2.421529 GGGGAGTATTTTGGCGAGTGAT 60.422 50.000 0.00 0.00 0.00 3.06
80 81 1.065709 GGGGAGTATTTTGGCGAGTGA 60.066 52.381 0.00 0.00 0.00 3.41
81 82 1.339631 TGGGGAGTATTTTGGCGAGTG 60.340 52.381 0.00 0.00 0.00 3.51
82 83 0.988832 TGGGGAGTATTTTGGCGAGT 59.011 50.000 0.00 0.00 0.00 4.18
83 84 1.379527 GTGGGGAGTATTTTGGCGAG 58.620 55.000 0.00 0.00 0.00 5.03
84 85 0.034863 GGTGGGGAGTATTTTGGCGA 60.035 55.000 0.00 0.00 0.00 5.54
85 86 1.035385 GGGTGGGGAGTATTTTGGCG 61.035 60.000 0.00 0.00 0.00 5.69
86 87 1.035385 CGGGTGGGGAGTATTTTGGC 61.035 60.000 0.00 0.00 0.00 4.52
87 88 1.035385 GCGGGTGGGGAGTATTTTGG 61.035 60.000 0.00 0.00 0.00 3.28
88 89 1.035385 GGCGGGTGGGGAGTATTTTG 61.035 60.000 0.00 0.00 0.00 2.44
89 90 1.305287 GGCGGGTGGGGAGTATTTT 59.695 57.895 0.00 0.00 0.00 1.82
90 91 2.686572 GGGCGGGTGGGGAGTATTT 61.687 63.158 0.00 0.00 0.00 1.40
91 92 3.094498 GGGCGGGTGGGGAGTATT 61.094 66.667 0.00 0.00 0.00 1.89
92 93 4.424867 TGGGCGGGTGGGGAGTAT 62.425 66.667 0.00 0.00 0.00 2.12
102 103 4.920112 TTGTGTCGTGTGGGCGGG 62.920 66.667 0.00 0.00 0.00 6.13
103 104 3.345808 CTTGTGTCGTGTGGGCGG 61.346 66.667 0.00 0.00 0.00 6.13
104 105 2.587753 ACTTGTGTCGTGTGGGCG 60.588 61.111 0.00 0.00 0.00 6.13
105 106 3.022287 CACTTGTGTCGTGTGGGC 58.978 61.111 0.00 0.00 0.00 5.36
106 107 1.372838 TTGCACTTGTGTCGTGTGGG 61.373 55.000 2.61 0.00 34.91 4.61
107 108 0.248054 GTTGCACTTGTGTCGTGTGG 60.248 55.000 2.61 0.00 34.91 4.17
108 109 0.586256 CGTTGCACTTGTGTCGTGTG 60.586 55.000 2.61 0.00 34.91 3.82
109 110 0.738063 TCGTTGCACTTGTGTCGTGT 60.738 50.000 2.61 0.00 34.91 4.49
110 111 0.043053 CTCGTTGCACTTGTGTCGTG 60.043 55.000 2.61 0.00 35.53 4.35
111 112 1.762222 GCTCGTTGCACTTGTGTCGT 61.762 55.000 2.61 0.00 42.31 4.34
112 113 1.083401 GCTCGTTGCACTTGTGTCG 60.083 57.895 2.61 5.90 42.31 4.35
113 114 4.901627 GCTCGTTGCACTTGTGTC 57.098 55.556 2.61 0.00 42.31 3.67
122 123 4.487412 GGCCAGCATGCTCGTTGC 62.487 66.667 19.68 17.31 43.25 4.17
123 124 2.749044 AGGCCAGCATGCTCGTTG 60.749 61.111 19.68 7.54 31.97 4.10
124 125 2.437359 GAGGCCAGCATGCTCGTT 60.437 61.111 19.68 4.04 31.97 3.85
125 126 3.677284 CTGAGGCCAGCATGCTCGT 62.677 63.158 19.68 9.45 33.07 4.18
126 127 2.895865 CTGAGGCCAGCATGCTCG 60.896 66.667 19.68 13.57 33.07 5.03
127 128 1.818785 GACTGAGGCCAGCATGCTC 60.819 63.158 19.68 7.65 44.16 4.26
128 129 2.254737 GAGACTGAGGCCAGCATGCT 62.255 60.000 16.30 16.30 44.16 3.79
129 130 1.818785 GAGACTGAGGCCAGCATGC 60.819 63.158 10.51 10.51 44.16 4.06
130 131 1.153208 GGAGACTGAGGCCAGCATG 60.153 63.158 5.01 0.00 44.16 4.06
131 132 2.729479 CGGAGACTGAGGCCAGCAT 61.729 63.158 5.01 0.00 44.16 3.79
132 133 3.385384 CGGAGACTGAGGCCAGCA 61.385 66.667 5.01 0.91 44.16 4.41
133 134 4.154347 CCGGAGACTGAGGCCAGC 62.154 72.222 5.01 0.00 44.16 4.85
134 135 2.363018 TCCGGAGACTGAGGCCAG 60.363 66.667 5.01 0.00 45.76 4.85
135 136 2.363018 CTCCGGAGACTGAGGCCA 60.363 66.667 28.21 0.00 37.97 5.36
136 137 3.844090 GCTCCGGAGACTGAGGCC 61.844 72.222 35.69 10.76 41.52 5.19
137 138 2.757917 AGCTCCGGAGACTGAGGC 60.758 66.667 35.69 18.53 41.52 4.70
138 139 2.477176 CGAGCTCCGGAGACTGAGG 61.477 68.421 35.69 16.80 41.52 3.86
139 140 1.436195 CTCGAGCTCCGGAGACTGAG 61.436 65.000 35.69 28.57 43.80 3.35
140 141 1.450491 CTCGAGCTCCGGAGACTGA 60.450 63.158 35.69 24.29 39.14 3.41
141 142 2.477176 CCTCGAGCTCCGGAGACTG 61.477 68.421 35.69 21.54 39.14 3.51
142 143 2.124487 CCTCGAGCTCCGGAGACT 60.124 66.667 35.69 28.53 39.14 3.24
143 144 2.438795 ACCTCGAGCTCCGGAGAC 60.439 66.667 35.69 24.47 39.14 3.36
144 145 2.438614 CACCTCGAGCTCCGGAGA 60.439 66.667 35.69 13.50 39.14 3.71
145 146 2.752238 ACACCTCGAGCTCCGGAG 60.752 66.667 27.83 27.83 39.14 4.63
146 147 3.062466 CACACCTCGAGCTCCGGA 61.062 66.667 20.32 2.93 39.14 5.14
147 148 4.803426 GCACACCTCGAGCTCCGG 62.803 72.222 6.99 11.56 39.14 5.14
148 149 3.753434 AGCACACCTCGAGCTCCG 61.753 66.667 6.99 3.57 32.05 4.63
149 150 2.125753 CAGCACACCTCGAGCTCC 60.126 66.667 6.99 0.00 36.26 4.70
150 151 2.813042 GCAGCACACCTCGAGCTC 60.813 66.667 6.99 2.73 36.26 4.09
151 152 4.731612 CGCAGCACACCTCGAGCT 62.732 66.667 6.99 0.00 39.63 4.09
153 154 4.363990 ACCGCAGCACACCTCGAG 62.364 66.667 5.13 5.13 0.00 4.04
154 155 4.662961 CACCGCAGCACACCTCGA 62.663 66.667 0.00 0.00 0.00 4.04
172 173 2.590007 GCATACGAGCAGGCCCTG 60.590 66.667 6.32 6.32 34.12 4.45
173 174 3.866582 GGCATACGAGCAGGCCCT 61.867 66.667 0.00 0.00 40.55 5.19
176 177 2.590007 CAGGGCATACGAGCAGGC 60.590 66.667 0.00 0.00 35.83 4.85
177 178 2.590007 GCAGGGCATACGAGCAGG 60.590 66.667 0.00 0.00 35.83 4.85
178 179 1.886313 CAGCAGGGCATACGAGCAG 60.886 63.158 0.00 0.00 35.83 4.24
179 180 2.187685 CAGCAGGGCATACGAGCA 59.812 61.111 0.00 0.00 35.83 4.26
180 181 3.275338 GCAGCAGGGCATACGAGC 61.275 66.667 0.00 0.00 0.00 5.03
181 182 1.153289 AAGCAGCAGGGCATACGAG 60.153 57.895 0.00 0.00 35.83 4.18
182 183 1.153369 GAAGCAGCAGGGCATACGA 60.153 57.895 0.00 0.00 35.83 3.43
183 184 2.528743 CGAAGCAGCAGGGCATACG 61.529 63.158 0.00 0.00 35.83 3.06
184 185 3.414272 CGAAGCAGCAGGGCATAC 58.586 61.111 0.00 0.00 35.83 2.39
201 202 1.449246 ACATCGAAGCAGCTCCAGC 60.449 57.895 0.00 0.00 42.49 4.85
202 203 1.088340 CCACATCGAAGCAGCTCCAG 61.088 60.000 0.00 0.00 0.00 3.86
203 204 1.078918 CCACATCGAAGCAGCTCCA 60.079 57.895 0.00 0.00 0.00 3.86
204 205 0.179062 ATCCACATCGAAGCAGCTCC 60.179 55.000 0.00 0.00 0.00 4.70
205 206 1.216122 GATCCACATCGAAGCAGCTC 58.784 55.000 0.00 0.00 0.00 4.09
206 207 0.179062 GGATCCACATCGAAGCAGCT 60.179 55.000 6.95 0.00 0.00 4.24
207 208 1.493950 CGGATCCACATCGAAGCAGC 61.494 60.000 13.41 0.00 0.00 5.25
208 209 0.877649 CCGGATCCACATCGAAGCAG 60.878 60.000 13.41 0.00 0.00 4.24
209 210 1.143838 CCGGATCCACATCGAAGCA 59.856 57.895 13.41 0.00 0.00 3.91
210 211 2.247437 GCCGGATCCACATCGAAGC 61.247 63.158 13.41 0.00 0.00 3.86
211 212 1.595382 GGCCGGATCCACATCGAAG 60.595 63.158 13.41 0.00 0.00 3.79
212 213 2.504032 GGCCGGATCCACATCGAA 59.496 61.111 13.41 0.00 0.00 3.71
213 214 3.911698 CGGCCGGATCCACATCGA 61.912 66.667 20.10 0.00 0.00 3.59
214 215 3.733344 AACGGCCGGATCCACATCG 62.733 63.158 31.76 11.83 0.00 3.84
215 216 2.180204 CAACGGCCGGATCCACATC 61.180 63.158 31.76 0.00 0.00 3.06
216 217 2.124736 CAACGGCCGGATCCACAT 60.125 61.111 31.76 1.49 0.00 3.21
217 218 4.402528 CCAACGGCCGGATCCACA 62.403 66.667 31.76 0.00 0.00 4.17
218 219 4.404098 ACCAACGGCCGGATCCAC 62.404 66.667 31.76 2.51 0.00 4.02
219 220 4.402528 CACCAACGGCCGGATCCA 62.403 66.667 31.76 0.00 0.00 3.41
221 222 3.912745 AACCACCAACGGCCGGATC 62.913 63.158 31.76 0.00 0.00 3.36
222 223 3.912745 GAACCACCAACGGCCGGAT 62.913 63.158 31.76 15.76 0.00 4.18
223 224 4.629523 GAACCACCAACGGCCGGA 62.630 66.667 31.76 0.00 0.00 5.14
227 228 4.025401 CAGCGAACCACCAACGGC 62.025 66.667 0.00 0.00 0.00 5.68
228 229 1.635663 GATCAGCGAACCACCAACGG 61.636 60.000 0.00 0.00 0.00 4.44
229 230 0.670546 AGATCAGCGAACCACCAACG 60.671 55.000 0.00 0.00 0.00 4.10
230 231 1.197721 CAAGATCAGCGAACCACCAAC 59.802 52.381 0.00 0.00 0.00 3.77
231 232 1.522668 CAAGATCAGCGAACCACCAA 58.477 50.000 0.00 0.00 0.00 3.67
232 233 0.321564 CCAAGATCAGCGAACCACCA 60.322 55.000 0.00 0.00 0.00 4.17
233 234 1.648467 GCCAAGATCAGCGAACCACC 61.648 60.000 0.00 0.00 0.00 4.61
234 235 1.796796 GCCAAGATCAGCGAACCAC 59.203 57.895 0.00 0.00 0.00 4.16
235 236 4.301505 GCCAAGATCAGCGAACCA 57.698 55.556 0.00 0.00 0.00 3.67
241 242 1.930908 AAAGCAGCGCCAAGATCAGC 61.931 55.000 2.29 0.00 0.00 4.26
242 243 0.524862 AAAAGCAGCGCCAAGATCAG 59.475 50.000 2.29 0.00 0.00 2.90
243 244 0.961019 AAAAAGCAGCGCCAAGATCA 59.039 45.000 2.29 0.00 0.00 2.92
244 245 1.343506 CAAAAAGCAGCGCCAAGATC 58.656 50.000 2.29 0.00 0.00 2.75
245 246 0.668401 GCAAAAAGCAGCGCCAAGAT 60.668 50.000 2.29 0.00 44.79 2.40
246 247 1.300080 GCAAAAAGCAGCGCCAAGA 60.300 52.632 2.29 0.00 44.79 3.02
247 248 3.237290 GCAAAAAGCAGCGCCAAG 58.763 55.556 2.29 0.00 44.79 3.61
256 257 0.936600 ACCAACGCATTGCAAAAAGC 59.063 45.000 1.71 7.54 45.96 3.51
257 258 2.971607 CAACCAACGCATTGCAAAAAG 58.028 42.857 1.71 0.00 34.17 2.27
264 265 2.366584 CGCAGCAACCAACGCATTG 61.367 57.895 0.00 0.00 35.40 2.82
265 266 2.050168 CGCAGCAACCAACGCATT 60.050 55.556 0.00 0.00 0.00 3.56
266 267 4.041917 CCGCAGCAACCAACGCAT 62.042 61.111 0.00 0.00 0.00 4.73
268 269 4.980903 CACCGCAGCAACCAACGC 62.981 66.667 0.00 0.00 0.00 4.84
269 270 4.326766 CCACCGCAGCAACCAACG 62.327 66.667 0.00 0.00 0.00 4.10
270 271 3.216292 ACCACCGCAGCAACCAAC 61.216 61.111 0.00 0.00 0.00 3.77
271 272 3.215568 CACCACCGCAGCAACCAA 61.216 61.111 0.00 0.00 0.00 3.67
274 275 4.332637 CAGCACCACCGCAGCAAC 62.333 66.667 0.00 0.00 0.00 4.17
278 279 4.624364 TGACCAGCACCACCGCAG 62.624 66.667 0.00 0.00 0.00 5.18
279 280 4.927782 GTGACCAGCACCACCGCA 62.928 66.667 0.00 0.00 41.78 5.69
282 283 4.250305 ACCGTGACCAGCACCACC 62.250 66.667 0.00 0.00 44.85 4.61
283 284 2.972505 CACCGTGACCAGCACCAC 60.973 66.667 0.00 0.00 44.85 4.16
284 285 4.248842 CCACCGTGACCAGCACCA 62.249 66.667 0.00 0.00 44.85 4.17
286 287 3.254024 ATCCCACCGTGACCAGCAC 62.254 63.158 0.00 0.00 44.21 4.40
287 288 2.927856 ATCCCACCGTGACCAGCA 60.928 61.111 0.00 0.00 0.00 4.41
288 289 2.125106 GATCCCACCGTGACCAGC 60.125 66.667 0.00 0.00 0.00 4.85
289 290 0.462581 CATGATCCCACCGTGACCAG 60.463 60.000 0.00 0.00 0.00 4.00
290 291 1.601703 CATGATCCCACCGTGACCA 59.398 57.895 0.00 0.00 0.00 4.02
291 292 1.153168 CCATGATCCCACCGTGACC 60.153 63.158 0.00 0.00 0.00 4.02
292 293 1.153168 CCCATGATCCCACCGTGAC 60.153 63.158 0.00 0.00 0.00 3.67
293 294 0.694105 ATCCCATGATCCCACCGTGA 60.694 55.000 0.00 0.00 0.00 4.35
294 295 0.250467 GATCCCATGATCCCACCGTG 60.250 60.000 0.00 0.00 41.37 4.94
295 296 2.145865 GATCCCATGATCCCACCGT 58.854 57.895 0.00 0.00 41.37 4.83
302 303 1.673665 GCTGCGGGATCCCATGATC 60.674 63.158 30.42 13.32 45.61 2.92
303 304 2.433446 GCTGCGGGATCCCATGAT 59.567 61.111 30.42 0.00 35.37 2.45
304 305 3.877450 GGCTGCGGGATCCCATGA 61.877 66.667 30.42 12.11 35.37 3.07
305 306 4.193893 TGGCTGCGGGATCCCATG 62.194 66.667 30.42 19.12 35.37 3.66
306 307 3.882326 CTGGCTGCGGGATCCCAT 61.882 66.667 30.42 0.00 35.37 4.00
310 311 4.864334 CACCCTGGCTGCGGGATC 62.864 72.222 18.04 0.00 44.90 3.36
336 337 2.971598 AATCACCACCCCTGCCGAG 61.972 63.158 0.00 0.00 0.00 4.63
337 338 2.933287 AATCACCACCCCTGCCGA 60.933 61.111 0.00 0.00 0.00 5.54
338 339 2.751436 CAATCACCACCCCTGCCG 60.751 66.667 0.00 0.00 0.00 5.69
339 340 2.362889 CCAATCACCACCCCTGCC 60.363 66.667 0.00 0.00 0.00 4.85
340 341 1.978617 CACCAATCACCACCCCTGC 60.979 63.158 0.00 0.00 0.00 4.85
341 342 1.304381 CCACCAATCACCACCCCTG 60.304 63.158 0.00 0.00 0.00 4.45
342 343 2.547595 CCCACCAATCACCACCCCT 61.548 63.158 0.00 0.00 0.00 4.79
343 344 2.037208 CCCACCAATCACCACCCC 59.963 66.667 0.00 0.00 0.00 4.95
344 345 2.679996 GCCCACCAATCACCACCC 60.680 66.667 0.00 0.00 0.00 4.61
345 346 3.061848 CGCCCACCAATCACCACC 61.062 66.667 0.00 0.00 0.00 4.61
346 347 3.061848 CCGCCCACCAATCACCAC 61.062 66.667 0.00 0.00 0.00 4.16
377 378 0.178301 GATTTCTCCCGGAGACCACC 59.822 60.000 17.25 3.41 38.51 4.61
378 379 1.196012 AGATTTCTCCCGGAGACCAC 58.804 55.000 17.25 10.55 38.51 4.16
379 380 1.952621 AAGATTTCTCCCGGAGACCA 58.047 50.000 17.25 7.28 38.51 4.02
380 381 2.633488 CAAAGATTTCTCCCGGAGACC 58.367 52.381 17.25 9.25 38.51 3.85
381 382 2.010497 GCAAAGATTTCTCCCGGAGAC 58.990 52.381 17.25 6.04 38.51 3.36
382 383 1.909302 AGCAAAGATTTCTCCCGGAGA 59.091 47.619 13.54 13.54 36.86 3.71
383 384 2.284190 GAGCAAAGATTTCTCCCGGAG 58.716 52.381 8.30 8.30 0.00 4.63
384 385 1.065418 GGAGCAAAGATTTCTCCCGGA 60.065 52.381 0.73 0.00 40.29 5.14
385 386 1.340017 TGGAGCAAAGATTTCTCCCGG 60.340 52.381 15.27 0.00 44.37 5.73
386 387 2.012673 CTGGAGCAAAGATTTCTCCCG 58.987 52.381 15.27 9.31 44.37 5.14
387 388 3.013219 GACTGGAGCAAAGATTTCTCCC 58.987 50.000 15.27 0.00 44.37 4.30
388 389 3.949132 AGACTGGAGCAAAGATTTCTCC 58.051 45.455 12.86 12.86 45.02 3.71
389 390 6.019156 CGATAAGACTGGAGCAAAGATTTCTC 60.019 42.308 0.00 0.00 0.00 2.87
390 391 5.814705 CGATAAGACTGGAGCAAAGATTTCT 59.185 40.000 0.00 0.00 0.00 2.52
391 392 5.007136 CCGATAAGACTGGAGCAAAGATTTC 59.993 44.000 0.00 0.00 0.00 2.17
392 393 4.878397 CCGATAAGACTGGAGCAAAGATTT 59.122 41.667 0.00 0.00 0.00 2.17
393 394 4.162320 TCCGATAAGACTGGAGCAAAGATT 59.838 41.667 0.00 0.00 0.00 2.40
394 395 3.706594 TCCGATAAGACTGGAGCAAAGAT 59.293 43.478 0.00 0.00 0.00 2.40
395 396 3.096852 TCCGATAAGACTGGAGCAAAGA 58.903 45.455 0.00 0.00 0.00 2.52
396 397 3.452474 CTCCGATAAGACTGGAGCAAAG 58.548 50.000 0.00 0.00 42.53 2.77
397 398 3.526931 CTCCGATAAGACTGGAGCAAA 57.473 47.619 0.00 0.00 42.53 3.68
402 403 1.480954 GCCAACTCCGATAAGACTGGA 59.519 52.381 0.00 0.00 0.00 3.86
403 404 1.802880 CGCCAACTCCGATAAGACTGG 60.803 57.143 0.00 0.00 0.00 4.00
404 405 1.134367 TCGCCAACTCCGATAAGACTG 59.866 52.381 0.00 0.00 0.00 3.51
405 406 1.134560 GTCGCCAACTCCGATAAGACT 59.865 52.381 0.00 0.00 37.04 3.24
406 407 1.557651 GTCGCCAACTCCGATAAGAC 58.442 55.000 0.00 0.00 37.04 3.01
407 408 0.099968 CGTCGCCAACTCCGATAAGA 59.900 55.000 0.00 0.00 37.04 2.10
408 409 0.870307 CCGTCGCCAACTCCGATAAG 60.870 60.000 0.00 0.00 37.04 1.73
409 410 1.140161 CCGTCGCCAACTCCGATAA 59.860 57.895 0.00 0.00 37.04 1.75
410 411 2.802792 CCGTCGCCAACTCCGATA 59.197 61.111 0.00 0.00 37.04 2.92
411 412 4.814294 GCCGTCGCCAACTCCGAT 62.814 66.667 0.00 0.00 37.04 4.18
438 439 3.850508 AAAAAGACCACGGCACCC 58.149 55.556 0.00 0.00 0.00 4.61
452 453 6.043012 ACCTCCATGATGATGTTTTCCAAAAA 59.957 34.615 0.00 0.00 0.00 1.94
453 454 5.543405 ACCTCCATGATGATGTTTTCCAAAA 59.457 36.000 0.00 0.00 0.00 2.44
454 455 5.047164 CACCTCCATGATGATGTTTTCCAAA 60.047 40.000 0.00 0.00 0.00 3.28
455 456 4.463539 CACCTCCATGATGATGTTTTCCAA 59.536 41.667 0.00 0.00 0.00 3.53
456 457 4.018490 CACCTCCATGATGATGTTTTCCA 58.982 43.478 0.00 0.00 0.00 3.53
457 458 4.019174 ACACCTCCATGATGATGTTTTCC 58.981 43.478 0.00 0.00 0.00 3.13
458 459 4.676196 GCACACCTCCATGATGATGTTTTC 60.676 45.833 0.00 0.00 0.00 2.29
459 460 3.194116 GCACACCTCCATGATGATGTTTT 59.806 43.478 0.00 0.00 0.00 2.43
460 461 2.756760 GCACACCTCCATGATGATGTTT 59.243 45.455 0.00 0.00 0.00 2.83
461 462 2.025605 AGCACACCTCCATGATGATGTT 60.026 45.455 0.00 0.00 0.00 2.71
462 463 1.562942 AGCACACCTCCATGATGATGT 59.437 47.619 0.00 0.00 0.00 3.06
463 464 2.219458 GAGCACACCTCCATGATGATG 58.781 52.381 0.00 0.00 34.35 3.07
464 465 1.841919 TGAGCACACCTCCATGATGAT 59.158 47.619 0.00 0.00 39.98 2.45
465 466 1.208776 CTGAGCACACCTCCATGATGA 59.791 52.381 0.00 0.00 39.98 2.92
466 467 1.664873 CTGAGCACACCTCCATGATG 58.335 55.000 0.00 0.00 39.98 3.07
467 468 0.545171 CCTGAGCACACCTCCATGAT 59.455 55.000 0.00 0.00 39.98 2.45
468 469 1.556373 CCCTGAGCACACCTCCATGA 61.556 60.000 0.00 0.00 39.98 3.07
469 470 1.077930 CCCTGAGCACACCTCCATG 60.078 63.158 0.00 0.00 39.98 3.66
470 471 2.976490 GCCCTGAGCACACCTCCAT 61.976 63.158 0.00 0.00 42.97 3.41
471 472 3.640407 GCCCTGAGCACACCTCCA 61.640 66.667 0.00 0.00 42.97 3.86
472 473 4.416738 GGCCCTGAGCACACCTCC 62.417 72.222 0.00 0.00 46.50 4.30
473 474 4.767255 CGGCCCTGAGCACACCTC 62.767 72.222 0.00 0.00 46.50 3.85
494 495 1.455032 CGGGCCCCTAAAATCCCAC 60.455 63.158 18.66 0.00 38.68 4.61
569 571 4.908601 TGAATAGGAAGCAGGAAAGACA 57.091 40.909 0.00 0.00 0.00 3.41
594 596 1.347707 AGACGCAAGATTGACCCTTGA 59.652 47.619 7.02 0.00 42.57 3.02
635 645 0.830648 TACTCCCAATTCAGCCTCCG 59.169 55.000 0.00 0.00 0.00 4.63
735 745 6.959639 AGTTATCAGACAAAAGAGGCAAAA 57.040 33.333 0.00 0.00 0.00 2.44
867 877 1.041447 ACCTAACGGCCGTCAGCTAT 61.041 55.000 34.29 17.90 43.05 2.97
894 904 2.309613 ACGGTGGTTATATCGCCTACA 58.690 47.619 0.00 0.00 32.93 2.74
1017 1056 1.186200 CCTCAGACGATTCCTCACCA 58.814 55.000 0.00 0.00 0.00 4.17
1108 1287 8.715190 TCATATATCCCCAATTCCTAAATCCT 57.285 34.615 0.00 0.00 0.00 3.24
1364 1812 9.890629 AATTGCTACATTTACTGATGAGTAAGA 57.109 29.630 4.92 0.00 43.91 2.10
2028 3606 6.500684 TCACTTCACTTCATTGAAATAGCC 57.499 37.500 0.01 0.00 35.07 3.93
2060 3638 9.881529 TCGACACCTTTACAAACAAATATAAAC 57.118 29.630 0.00 0.00 0.00 2.01
2191 3769 2.710096 ACTTGCAGTACTGTGGTGTT 57.290 45.000 23.44 1.80 0.00 3.32
2507 7915 3.487372 ACCTACTTTGCCTCTTTTGTCC 58.513 45.455 0.00 0.00 0.00 4.02
2607 8015 5.412904 CAGGGAAAAGAAACTAGTCCATCAC 59.587 44.000 0.00 0.00 0.00 3.06
2609 8017 5.644206 GTCAGGGAAAAGAAACTAGTCCATC 59.356 44.000 0.00 0.00 0.00 3.51
2646 8055 5.963176 TGCAATGTTCTATGAACACACAT 57.037 34.783 14.23 0.00 32.37 3.21
2705 8115 9.080915 GCTTTCTCATTTAACTGATTGAATTCC 57.919 33.333 2.27 0.00 0.00 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.