Multiple sequence alignment - TraesCS2D01G546500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G546500 chr2D 100.000 5154 0 0 387 5540 622927373 622922220 0.000000e+00 9518.0
1 TraesCS2D01G546500 chr2D 100.000 155 0 0 1 155 622927759 622927605 2.530000e-73 287.0
2 TraesCS2D01G546500 chr2D 95.495 111 5 0 4798 4908 640202154 640202264 1.590000e-40 178.0
3 TraesCS2D01G546500 chr2D 95.000 40 2 0 5219 5258 195298420 195298381 4.630000e-06 63.9
4 TraesCS2D01G546500 chr2A 91.850 3264 181 46 1571 4797 754361216 754358001 0.000000e+00 4475.0
5 TraesCS2D01G546500 chr2A 83.317 1043 100 37 390 1412 754362398 754361410 0.000000e+00 894.0
6 TraesCS2D01G546500 chr2A 84.774 243 18 9 4903 5145 754358003 754357780 5.580000e-55 226.0
7 TraesCS2D01G546500 chr2A 89.831 118 8 4 5426 5540 754357444 754357328 1.240000e-31 148.0
8 TraesCS2D01G546500 chr2A 95.122 41 2 0 5105 5145 754357744 754357704 1.290000e-06 65.8
9 TraesCS2D01G546500 chr2B 91.603 2239 152 24 1760 3981 765072308 765070089 0.000000e+00 3061.0
10 TraesCS2D01G546500 chr2B 82.634 1359 144 47 426 1709 765073660 765072319 0.000000e+00 1118.0
11 TraesCS2D01G546500 chr2B 87.026 686 50 17 4127 4792 765069961 765069295 0.000000e+00 737.0
12 TraesCS2D01G546500 chr2B 88.060 536 54 9 1709 2238 482186820 482187351 1.310000e-175 627.0
13 TraesCS2D01G546500 chr2B 84.983 586 48 20 4903 5472 765069292 765068731 4.850000e-155 558.0
14 TraesCS2D01G546500 chr2B 92.400 250 16 3 1940 2186 700134120 700134369 2.460000e-93 353.0
15 TraesCS2D01G546500 chr2B 91.270 252 15 4 1940 2186 512021560 512021809 2.470000e-88 337.0
16 TraesCS2D01G546500 chr2B 96.429 56 1 1 5485 5540 765068482 765068428 2.130000e-14 91.6
17 TraesCS2D01G546500 chr1A 93.600 250 13 3 1940 2186 34148875 34148626 2.440000e-98 370.0
18 TraesCS2D01G546500 chr7B 81.646 474 51 21 4929 5394 62791365 62791810 1.470000e-95 361.0
19 TraesCS2D01G546500 chr7B 93.103 145 7 3 4566 4707 62791216 62791360 5.620000e-50 209.0
20 TraesCS2D01G546500 chr6B 92.800 250 15 3 1940 2186 548199462 548199711 5.280000e-95 359.0
21 TraesCS2D01G546500 chr6B 72.748 444 83 31 3043 3462 114363302 114362873 1.260000e-21 115.0
22 TraesCS2D01G546500 chr6B 95.833 48 2 0 5222 5269 384973126 384973079 1.650000e-10 78.7
23 TraesCS2D01G546500 chr5D 76.952 525 96 20 2009 2513 534612395 534611876 5.470000e-70 276.0
24 TraesCS2D01G546500 chr5D 73.602 447 76 34 3043 3462 534611297 534610866 3.480000e-27 134.0
25 TraesCS2D01G546500 chr1D 95.625 160 7 0 2027 2186 211214779 211214620 1.980000e-64 257.0
26 TraesCS2D01G546500 chr1D 93.694 111 7 0 4796 4906 5428003 5428113 3.430000e-37 167.0
27 TraesCS2D01G546500 chr6D 93.277 119 8 0 4791 4909 222595186 222595304 5.700000e-40 176.0
28 TraesCS2D01G546500 chr6D 95.413 109 5 0 4798 4906 298921091 298920983 2.050000e-39 174.0
29 TraesCS2D01G546500 chr6D 92.308 117 8 1 4794 4910 455884124 455884009 1.230000e-36 165.0
30 TraesCS2D01G546500 chr6D 90.984 122 9 2 4785 4905 431047775 431047655 4.440000e-36 163.0
31 TraesCS2D01G546500 chr6D 90.000 80 5 3 1940 2016 163425572 163425651 3.530000e-17 100.0
32 TraesCS2D01G546500 chr6A 93.860 114 6 1 4797 4910 250834514 250834626 2.650000e-38 171.0
33 TraesCS2D01G546500 chr4A 94.545 110 6 0 4797 4906 593739022 593739131 2.650000e-38 171.0
34 TraesCS2D01G546500 chr4A 91.304 92 8 0 3043 3134 636980240 636980331 5.830000e-25 126.0
35 TraesCS2D01G546500 chr3A 93.162 117 7 1 4796 4911 46169210 46169094 2.650000e-38 171.0
36 TraesCS2D01G546500 chr3B 85.811 148 14 4 5253 5394 170131157 170131303 3.460000e-32 150.0
37 TraesCS2D01G546500 chr5B 90.526 95 9 0 3043 3137 674659872 674659778 5.830000e-25 126.0
38 TraesCS2D01G546500 chr5B 91.304 92 8 0 3043 3134 676014274 676014365 5.830000e-25 126.0
39 TraesCS2D01G546500 chr4D 90.000 80 5 3 1940 2016 457302253 457302174 3.530000e-17 100.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G546500 chr2D 622922220 622927759 5539 True 4902.50 9518 100.0000 1 5540 2 chr2D.!!$R2 5539
1 TraesCS2D01G546500 chr2A 754357328 754362398 5070 True 1161.76 4475 88.9788 390 5540 5 chr2A.!!$R1 5150
2 TraesCS2D01G546500 chr2B 765068428 765073660 5232 True 1113.12 3061 88.5350 426 5540 5 chr2B.!!$R1 5114
3 TraesCS2D01G546500 chr2B 482186820 482187351 531 False 627.00 627 88.0600 1709 2238 1 chr2B.!!$F1 529
4 TraesCS2D01G546500 chr7B 62791216 62791810 594 False 285.00 361 87.3745 4566 5394 2 chr7B.!!$F1 828
5 TraesCS2D01G546500 chr5D 534610866 534612395 1529 True 205.00 276 75.2770 2009 3462 2 chr5D.!!$R1 1453

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
47 48 0.108804 GATTCTCGTCAGGCGTTCCA 60.109 55.000 0.00 0.0 42.13 3.53 F
117 118 0.248621 GCATGTGCGATTAGTTGGGC 60.249 55.000 0.00 0.0 0.00 5.36 F
1240 1315 0.250901 ATTTCGGTCCTTGCTGCTGT 60.251 50.000 0.00 0.0 0.00 4.40 F
1606 1735 1.000955 CCCACTCCATGTAGTATCCGC 59.999 57.143 0.00 0.0 0.00 5.54 F
3134 3435 1.078918 GCCCATGGAAGCAAAAGGC 60.079 57.895 15.22 0.0 45.30 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1590 1718 0.243907 CCGGCGGATACTACATGGAG 59.756 60.0 24.41 2.41 0.00 3.86 R
1592 1720 0.895530 ATCCGGCGGATACTACATGG 59.104 55.0 38.22 1.90 41.16 3.66 R
2650 2883 0.526524 GCTTGACGTCCTCAGGATCG 60.527 60.0 14.12 12.50 32.73 3.69 R
3283 3590 0.981943 AGGTCCGGTTCCAGGTAAAG 59.018 55.0 17.60 0.00 0.00 1.85 R
4888 5301 0.033796 ATGTACTCCCTCCGTTCCGA 60.034 55.0 0.00 0.00 0.00 4.55 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.168270 TCCCTAATTTCTTTTTGTTGTGGG 57.832 37.500 0.00 0.00 0.00 4.61
24 25 5.900123 TCCCTAATTTCTTTTTGTTGTGGGA 59.100 36.000 0.00 0.00 36.62 4.37
25 26 6.556874 TCCCTAATTTCTTTTTGTTGTGGGAT 59.443 34.615 0.00 0.00 34.37 3.85
26 27 6.650390 CCCTAATTTCTTTTTGTTGTGGGATG 59.350 38.462 0.00 0.00 31.98 3.51
27 28 6.650390 CCTAATTTCTTTTTGTTGTGGGATGG 59.350 38.462 0.00 0.00 0.00 3.51
28 29 4.414337 TTTCTTTTTGTTGTGGGATGGG 57.586 40.909 0.00 0.00 0.00 4.00
29 30 3.320610 TCTTTTTGTTGTGGGATGGGA 57.679 42.857 0.00 0.00 0.00 4.37
30 31 3.855668 TCTTTTTGTTGTGGGATGGGAT 58.144 40.909 0.00 0.00 0.00 3.85
31 32 4.230455 TCTTTTTGTTGTGGGATGGGATT 58.770 39.130 0.00 0.00 0.00 3.01
32 33 4.283212 TCTTTTTGTTGTGGGATGGGATTC 59.717 41.667 0.00 0.00 0.00 2.52
33 34 3.541242 TTTGTTGTGGGATGGGATTCT 57.459 42.857 0.00 0.00 0.00 2.40
34 35 2.806945 TGTTGTGGGATGGGATTCTC 57.193 50.000 0.00 0.00 0.00 2.87
35 36 1.065491 TGTTGTGGGATGGGATTCTCG 60.065 52.381 0.00 0.00 0.00 4.04
36 37 1.065418 GTTGTGGGATGGGATTCTCGT 60.065 52.381 0.00 0.00 0.00 4.18
37 38 0.830648 TGTGGGATGGGATTCTCGTC 59.169 55.000 0.00 0.00 0.00 4.20
38 39 0.830648 GTGGGATGGGATTCTCGTCA 59.169 55.000 8.01 0.00 0.00 4.35
39 40 1.123077 TGGGATGGGATTCTCGTCAG 58.877 55.000 8.01 0.00 0.00 3.51
40 41 0.394565 GGGATGGGATTCTCGTCAGG 59.605 60.000 8.01 0.00 0.00 3.86
41 42 0.250081 GGATGGGATTCTCGTCAGGC 60.250 60.000 8.01 0.00 0.00 4.85
42 43 0.598680 GATGGGATTCTCGTCAGGCG 60.599 60.000 0.64 0.00 43.01 5.52
43 44 1.330655 ATGGGATTCTCGTCAGGCGT 61.331 55.000 0.00 0.00 42.13 5.68
44 45 1.218316 GGGATTCTCGTCAGGCGTT 59.782 57.895 0.00 0.00 42.13 4.84
45 46 0.806492 GGGATTCTCGTCAGGCGTTC 60.806 60.000 0.00 0.00 42.13 3.95
46 47 0.806492 GGATTCTCGTCAGGCGTTCC 60.806 60.000 0.00 0.00 42.13 3.62
47 48 0.108804 GATTCTCGTCAGGCGTTCCA 60.109 55.000 0.00 0.00 42.13 3.53
48 49 0.537188 ATTCTCGTCAGGCGTTCCAT 59.463 50.000 0.00 0.00 42.13 3.41
49 50 0.320374 TTCTCGTCAGGCGTTCCATT 59.680 50.000 0.00 0.00 42.13 3.16
50 51 0.320374 TCTCGTCAGGCGTTCCATTT 59.680 50.000 0.00 0.00 42.13 2.32
51 52 1.156736 CTCGTCAGGCGTTCCATTTT 58.843 50.000 0.00 0.00 42.13 1.82
52 53 0.871722 TCGTCAGGCGTTCCATTTTG 59.128 50.000 0.00 0.00 42.13 2.44
53 54 0.591170 CGTCAGGCGTTCCATTTTGT 59.409 50.000 0.00 0.00 35.54 2.83
54 55 1.001815 CGTCAGGCGTTCCATTTTGTT 60.002 47.619 0.00 0.00 35.54 2.83
55 56 2.393764 GTCAGGCGTTCCATTTTGTTG 58.606 47.619 0.00 0.00 33.74 3.33
56 57 2.028130 TCAGGCGTTCCATTTTGTTGT 58.972 42.857 0.00 0.00 33.74 3.32
57 58 3.003897 GTCAGGCGTTCCATTTTGTTGTA 59.996 43.478 0.00 0.00 33.74 2.41
58 59 3.003897 TCAGGCGTTCCATTTTGTTGTAC 59.996 43.478 0.00 0.00 33.74 2.90
59 60 2.952978 AGGCGTTCCATTTTGTTGTACA 59.047 40.909 0.00 0.00 33.74 2.90
60 61 3.381908 AGGCGTTCCATTTTGTTGTACAA 59.618 39.130 3.59 3.59 33.36 2.41
61 62 3.487942 GGCGTTCCATTTTGTTGTACAAC 59.512 43.478 28.13 28.13 37.90 3.32
62 63 4.356289 GCGTTCCATTTTGTTGTACAACT 58.644 39.130 32.58 14.98 37.90 3.16
63 64 5.505985 GGCGTTCCATTTTGTTGTACAACTA 60.506 40.000 32.58 25.37 37.90 2.24
64 65 6.146898 GCGTTCCATTTTGTTGTACAACTAT 58.853 36.000 32.58 21.86 37.90 2.12
65 66 6.304683 GCGTTCCATTTTGTTGTACAACTATC 59.695 38.462 32.58 12.71 37.90 2.08
66 67 6.518395 CGTTCCATTTTGTTGTACAACTATCG 59.482 38.462 32.58 19.42 37.90 2.92
67 68 7.569774 CGTTCCATTTTGTTGTACAACTATCGA 60.570 37.037 32.58 20.04 37.90 3.59
68 69 7.359262 TCCATTTTGTTGTACAACTATCGAG 57.641 36.000 32.58 19.93 37.90 4.04
69 70 6.370442 TCCATTTTGTTGTACAACTATCGAGG 59.630 38.462 32.58 25.74 37.90 4.63
70 71 6.403200 CCATTTTGTTGTACAACTATCGAGGG 60.403 42.308 32.58 21.75 37.90 4.30
71 72 4.877378 TTGTTGTACAACTATCGAGGGT 57.123 40.909 32.58 0.00 41.67 4.34
72 73 4.182693 TGTTGTACAACTATCGAGGGTG 57.817 45.455 32.58 4.91 41.67 4.61
73 74 3.056393 TGTTGTACAACTATCGAGGGTGG 60.056 47.826 32.58 2.91 41.67 4.61
74 75 1.479323 TGTACAACTATCGAGGGTGGC 59.521 52.381 10.30 4.39 0.00 5.01
75 76 1.479323 GTACAACTATCGAGGGTGGCA 59.521 52.381 10.30 0.00 0.00 4.92
76 77 0.981183 ACAACTATCGAGGGTGGCAA 59.019 50.000 10.30 0.00 0.00 4.52
77 78 1.559682 ACAACTATCGAGGGTGGCAAT 59.440 47.619 10.30 0.00 0.00 3.56
78 79 2.026262 ACAACTATCGAGGGTGGCAATT 60.026 45.455 10.30 0.00 0.00 2.32
79 80 2.332063 ACTATCGAGGGTGGCAATTG 57.668 50.000 0.00 0.00 0.00 2.32
80 81 1.559682 ACTATCGAGGGTGGCAATTGT 59.440 47.619 7.40 0.00 0.00 2.71
81 82 2.026262 ACTATCGAGGGTGGCAATTGTT 60.026 45.455 7.40 0.00 0.00 2.83
82 83 1.176527 ATCGAGGGTGGCAATTGTTG 58.823 50.000 7.40 0.00 0.00 3.33
92 93 3.955291 CAATTGTTGCGTGTTGGGA 57.045 47.368 0.00 0.00 0.00 4.37
93 94 1.769733 CAATTGTTGCGTGTTGGGAG 58.230 50.000 0.00 0.00 0.00 4.30
94 95 0.673437 AATTGTTGCGTGTTGGGAGG 59.327 50.000 0.00 0.00 0.00 4.30
95 96 1.178534 ATTGTTGCGTGTTGGGAGGG 61.179 55.000 0.00 0.00 0.00 4.30
96 97 3.670377 GTTGCGTGTTGGGAGGGC 61.670 66.667 0.00 0.00 0.00 5.19
97 98 4.966787 TTGCGTGTTGGGAGGGCC 62.967 66.667 0.00 0.00 0.00 5.80
101 102 4.740822 GTGTTGGGAGGGCCGCAT 62.741 66.667 10.15 0.00 37.57 4.73
102 103 4.738998 TGTTGGGAGGGCCGCATG 62.739 66.667 10.15 0.00 37.57 4.06
103 104 4.740822 GTTGGGAGGGCCGCATGT 62.741 66.667 10.15 0.00 37.57 3.21
104 105 4.738998 TTGGGAGGGCCGCATGTG 62.739 66.667 10.15 0.00 37.57 3.21
116 117 3.924238 GCATGTGCGATTAGTTGGG 57.076 52.632 0.00 0.00 0.00 4.12
117 118 0.248621 GCATGTGCGATTAGTTGGGC 60.249 55.000 0.00 0.00 0.00 5.36
118 119 1.382522 CATGTGCGATTAGTTGGGCT 58.617 50.000 0.00 0.00 0.00 5.19
119 120 1.064505 CATGTGCGATTAGTTGGGCTG 59.935 52.381 0.00 0.00 0.00 4.85
120 121 0.323302 TGTGCGATTAGTTGGGCTGA 59.677 50.000 0.00 0.00 0.00 4.26
121 122 1.065491 TGTGCGATTAGTTGGGCTGAT 60.065 47.619 0.00 0.00 0.00 2.90
122 123 2.017049 GTGCGATTAGTTGGGCTGATT 58.983 47.619 0.00 0.00 0.00 2.57
123 124 2.423538 GTGCGATTAGTTGGGCTGATTT 59.576 45.455 0.00 0.00 0.00 2.17
124 125 2.682856 TGCGATTAGTTGGGCTGATTTC 59.317 45.455 0.00 0.00 0.00 2.17
125 126 2.945668 GCGATTAGTTGGGCTGATTTCT 59.054 45.455 0.00 0.00 0.00 2.52
126 127 4.127171 GCGATTAGTTGGGCTGATTTCTA 58.873 43.478 0.00 0.00 0.00 2.10
127 128 4.212214 GCGATTAGTTGGGCTGATTTCTAG 59.788 45.833 0.00 0.00 0.00 2.43
128 129 4.752101 CGATTAGTTGGGCTGATTTCTAGG 59.248 45.833 0.00 0.00 0.00 3.02
129 130 5.453339 CGATTAGTTGGGCTGATTTCTAGGA 60.453 44.000 0.00 0.00 0.00 2.94
130 131 3.922171 AGTTGGGCTGATTTCTAGGAG 57.078 47.619 0.00 0.00 0.00 3.69
131 132 3.454858 AGTTGGGCTGATTTCTAGGAGA 58.545 45.455 0.00 0.00 0.00 3.71
132 133 3.454082 AGTTGGGCTGATTTCTAGGAGAG 59.546 47.826 0.00 0.00 0.00 3.20
133 134 2.402564 TGGGCTGATTTCTAGGAGAGG 58.597 52.381 0.00 0.00 0.00 3.69
134 135 1.696884 GGGCTGATTTCTAGGAGAGGG 59.303 57.143 0.00 0.00 0.00 4.30
135 136 1.696884 GGCTGATTTCTAGGAGAGGGG 59.303 57.143 0.00 0.00 0.00 4.79
136 137 1.696884 GCTGATTTCTAGGAGAGGGGG 59.303 57.143 0.00 0.00 0.00 5.40
154 155 3.663025 GGGGGAAAATGAATTGTGTGTG 58.337 45.455 0.00 0.00 0.00 3.82
409 410 4.786425 AGTGGCAACTCTCTTTCTTCTTT 58.214 39.130 0.00 0.00 34.79 2.52
410 411 4.819088 AGTGGCAACTCTCTTTCTTCTTTC 59.181 41.667 0.00 0.00 34.79 2.62
411 412 4.819088 GTGGCAACTCTCTTTCTTCTTTCT 59.181 41.667 0.00 0.00 37.61 2.52
412 413 5.049749 GTGGCAACTCTCTTTCTTCTTTCTC 60.050 44.000 0.00 0.00 37.61 2.87
418 419 6.987386 ACTCTCTTTCTTCTTTCTCAATCGA 58.013 36.000 0.00 0.00 0.00 3.59
472 476 8.783093 CAAACTCTGTATTTTACCATTGTCAGA 58.217 33.333 0.00 0.00 0.00 3.27
483 487 2.174210 CCATTGTCAGACCATCCATCCT 59.826 50.000 0.00 0.00 0.00 3.24
489 493 3.513515 GTCAGACCATCCATCCTAGATCC 59.486 52.174 0.00 0.00 0.00 3.36
496 500 4.382470 CCATCCATCCTAGATCCGTGATTC 60.382 50.000 0.00 0.00 0.00 2.52
548 552 4.675029 CCCACACGACCCACCGAC 62.675 72.222 0.00 0.00 0.00 4.79
549 553 4.675029 CCACACGACCCACCGACC 62.675 72.222 0.00 0.00 0.00 4.79
552 556 3.755628 CACGACCCACCGACCGAT 61.756 66.667 0.00 0.00 0.00 4.18
553 557 3.446570 ACGACCCACCGACCGATC 61.447 66.667 0.00 0.00 0.00 3.69
571 602 2.146724 CACCCATCCTATCCGCCCA 61.147 63.158 0.00 0.00 0.00 5.36
573 604 2.343758 CCATCCTATCCGCCCACG 59.656 66.667 0.00 0.00 39.67 4.94
618 651 1.341209 TCGCATATTCGCATCTGACCT 59.659 47.619 0.00 0.00 0.00 3.85
619 652 1.723542 CGCATATTCGCATCTGACCTC 59.276 52.381 0.00 0.00 0.00 3.85
648 681 3.509575 TCCGCATTTTACCATTTTCAGCT 59.490 39.130 0.00 0.00 0.00 4.24
649 682 3.613737 CCGCATTTTACCATTTTCAGCTG 59.386 43.478 7.63 7.63 0.00 4.24
687 720 1.808390 CGCAACCTACCCGCACTAC 60.808 63.158 0.00 0.00 0.00 2.73
701 734 1.069378 CACTACCGACTCGCCGAAAC 61.069 60.000 0.00 0.00 0.00 2.78
702 735 1.515736 CTACCGACTCGCCGAAACC 60.516 63.158 0.00 0.00 0.00 3.27
703 736 2.879039 CTACCGACTCGCCGAAACCC 62.879 65.000 0.00 0.00 0.00 4.11
735 774 3.103637 CGGTTTTGGACTGGAACCA 57.896 52.632 5.47 0.00 42.27 3.67
737 776 1.960689 CGGTTTTGGACTGGAACCATT 59.039 47.619 5.47 0.00 42.27 3.16
738 777 2.364002 CGGTTTTGGACTGGAACCATTT 59.636 45.455 5.47 0.00 42.27 2.32
739 778 3.570550 CGGTTTTGGACTGGAACCATTTA 59.429 43.478 5.47 0.00 42.27 1.40
907 961 1.451936 CCCCTATTAAGCAGCGCCT 59.548 57.895 2.29 0.00 0.00 5.52
1143 1217 0.309302 CGATCCGATCTCGAGTGCTT 59.691 55.000 13.13 0.00 43.02 3.91
1145 1219 2.389998 GATCCGATCTCGAGTGCTTTC 58.610 52.381 13.13 2.64 43.02 2.62
1155 1229 2.355717 GAGTGCTTTCTCGTGCTACT 57.644 50.000 0.00 0.00 0.00 2.57
1156 1230 3.489180 GAGTGCTTTCTCGTGCTACTA 57.511 47.619 0.00 0.00 0.00 1.82
1157 1231 4.035278 GAGTGCTTTCTCGTGCTACTAT 57.965 45.455 0.00 0.00 0.00 2.12
1159 1233 2.282820 GTGCTTTCTCGTGCTACTATGC 59.717 50.000 0.00 0.00 0.00 3.14
1198 1272 1.352156 GCGTTCGCTTGTTCCGATCT 61.352 55.000 9.99 0.00 34.35 2.75
1209 1283 1.102978 TTCCGATCTGTGATCTGCGA 58.897 50.000 6.09 0.00 0.00 5.10
1210 1284 1.322442 TCCGATCTGTGATCTGCGAT 58.678 50.000 6.09 0.00 0.00 4.58
1212 1286 0.782981 CGATCTGTGATCTGCGATGC 59.217 55.000 6.09 0.00 0.00 3.91
1213 1287 1.602416 CGATCTGTGATCTGCGATGCT 60.602 52.381 6.09 0.00 0.00 3.79
1214 1288 2.060284 GATCTGTGATCTGCGATGCTC 58.940 52.381 0.00 0.00 0.00 4.26
1215 1289 0.819582 TCTGTGATCTGCGATGCTCA 59.180 50.000 0.00 0.00 0.00 4.26
1240 1315 0.250901 ATTTCGGTCCTTGCTGCTGT 60.251 50.000 0.00 0.00 0.00 4.40
1262 1340 4.160626 GTCTGTTAGGGATCTAGTGCTGTT 59.839 45.833 0.00 0.00 0.00 3.16
1266 1344 1.484240 AGGGATCTAGTGCTGTTCTGC 59.516 52.381 0.00 0.00 0.00 4.26
1267 1345 1.484240 GGGATCTAGTGCTGTTCTGCT 59.516 52.381 0.00 0.00 0.00 4.24
1268 1346 2.093235 GGGATCTAGTGCTGTTCTGCTT 60.093 50.000 0.00 0.00 0.00 3.91
1269 1347 3.194062 GGATCTAGTGCTGTTCTGCTTC 58.806 50.000 0.00 0.00 0.00 3.86
1270 1348 3.368843 GGATCTAGTGCTGTTCTGCTTCA 60.369 47.826 0.00 0.00 0.00 3.02
1271 1349 3.969287 TCTAGTGCTGTTCTGCTTCAT 57.031 42.857 3.65 0.00 0.00 2.57
1272 1350 3.854666 TCTAGTGCTGTTCTGCTTCATC 58.145 45.455 3.65 0.00 0.00 2.92
1294 1372 3.495193 CTTCATGTTGAATTGTCTGCGG 58.505 45.455 0.00 0.00 35.59 5.69
1300 1378 1.686355 TGAATTGTCTGCGGGTTTGT 58.314 45.000 0.00 0.00 0.00 2.83
1324 1402 3.243359 TCCTTCTCCATTTTTGGCTGT 57.757 42.857 0.00 0.00 0.00 4.40
1328 1406 4.202243 CCTTCTCCATTTTTGGCTGTTTGA 60.202 41.667 0.00 0.00 0.00 2.69
1370 1448 4.501071 TGAATCTGACGCTAGGTTAAACC 58.499 43.478 0.00 0.00 38.99 3.27
1373 1451 3.656559 TCTGACGCTAGGTTAAACCAAC 58.343 45.455 0.00 0.00 41.95 3.77
1404 1482 2.317530 TGACGTGAATGTGGTGACAA 57.682 45.000 0.00 0.00 46.06 3.18
1405 1483 1.937223 TGACGTGAATGTGGTGACAAC 59.063 47.619 0.00 0.00 46.06 3.32
1412 1491 3.820467 TGAATGTGGTGACAACTTGATCC 59.180 43.478 0.00 0.00 46.06 3.36
1416 1495 2.489329 GTGGTGACAACTTGATCCCATG 59.511 50.000 0.00 0.00 46.06 3.66
1429 1508 2.125310 CCATGGCCGTTGCTCGTA 60.125 61.111 0.00 0.00 37.74 3.43
1517 1601 3.513912 AGATCTTTCGTGGTCCACATGTA 59.486 43.478 21.91 3.39 37.38 2.29
1527 1611 5.584649 CGTGGTCCACATGTAAATTGTAGAT 59.415 40.000 21.91 0.00 33.40 1.98
1590 1718 5.468072 GTGTTGTCATGATAGATCATCCCAC 59.532 44.000 0.00 1.55 45.23 4.61
1592 1720 5.735285 TGTCATGATAGATCATCCCACTC 57.265 43.478 0.00 0.00 45.23 3.51
1596 1725 5.189145 TCATGATAGATCATCCCACTCCATG 59.811 44.000 1.90 0.00 45.23 3.66
1604 1733 4.160329 TCATCCCACTCCATGTAGTATCC 58.840 47.826 0.00 0.00 0.00 2.59
1606 1735 1.000955 CCCACTCCATGTAGTATCCGC 59.999 57.143 0.00 0.00 0.00 5.54
1630 1759 7.203910 GCCGGATCTATAAATAGGACATAGTG 58.796 42.308 5.05 0.00 0.00 2.74
1672 1801 2.495270 ACTCATGTCAGCACTCTACAGG 59.505 50.000 0.00 0.00 0.00 4.00
1692 1821 2.755103 GGACCTGGGCAGTTAAATCTTG 59.245 50.000 0.00 0.00 0.00 3.02
1693 1822 3.421844 GACCTGGGCAGTTAAATCTTGT 58.578 45.455 0.00 0.00 0.00 3.16
1694 1823 3.826729 GACCTGGGCAGTTAAATCTTGTT 59.173 43.478 0.00 0.00 0.00 2.83
1695 1824 3.826729 ACCTGGGCAGTTAAATCTTGTTC 59.173 43.478 0.00 0.00 0.00 3.18
1696 1825 4.082125 CCTGGGCAGTTAAATCTTGTTCT 58.918 43.478 0.00 0.00 0.00 3.01
1697 1826 4.524328 CCTGGGCAGTTAAATCTTGTTCTT 59.476 41.667 0.00 0.00 0.00 2.52
1698 1827 5.710099 CCTGGGCAGTTAAATCTTGTTCTTA 59.290 40.000 0.00 0.00 0.00 2.10
1699 1828 6.349363 CCTGGGCAGTTAAATCTTGTTCTTAC 60.349 42.308 0.00 0.00 0.00 2.34
1700 1829 6.065374 TGGGCAGTTAAATCTTGTTCTTACA 58.935 36.000 0.00 0.00 0.00 2.41
1701 1830 6.719370 TGGGCAGTTAAATCTTGTTCTTACAT 59.281 34.615 0.00 0.00 33.44 2.29
1702 1831 7.232534 TGGGCAGTTAAATCTTGTTCTTACATT 59.767 33.333 0.00 0.00 33.44 2.71
1703 1832 8.088365 GGGCAGTTAAATCTTGTTCTTACATTT 58.912 33.333 0.00 0.00 33.44 2.32
1742 1871 6.874288 TTATCCTACTAGTTCGAGTAAGGC 57.126 41.667 0.00 0.00 31.57 4.35
1744 1873 3.118629 TCCTACTAGTTCGAGTAAGGCGA 60.119 47.826 0.00 0.00 31.57 5.54
1759 1888 3.377346 AGGCGAACTGTATATCTGCTG 57.623 47.619 0.00 0.00 0.00 4.41
1771 1900 7.116948 ACTGTATATCTGCTGCTAATTTAAGCG 59.883 37.037 0.00 0.00 45.85 4.68
1775 1904 5.464965 TCTGCTGCTAATTTAAGCGTTAC 57.535 39.130 0.00 0.00 45.85 2.50
1918 2047 3.670625 CCGAGGACAAAGGTGAATTACA 58.329 45.455 0.00 0.00 0.00 2.41
1938 2067 1.694696 ACAAACCTCTCTCCACCTCAC 59.305 52.381 0.00 0.00 0.00 3.51
1966 2097 7.495934 CAGGAAAACTTGACTGAGAGTTTCTTA 59.504 37.037 2.39 0.00 43.27 2.10
1967 2098 8.214364 AGGAAAACTTGACTGAGAGTTTCTTAT 58.786 33.333 2.39 0.00 43.27 1.73
1968 2099 8.286097 GGAAAACTTGACTGAGAGTTTCTTATG 58.714 37.037 2.39 0.00 43.27 1.90
1969 2100 8.964476 AAAACTTGACTGAGAGTTTCTTATGA 57.036 30.769 2.39 0.00 43.27 2.15
1970 2101 9.566432 AAAACTTGACTGAGAGTTTCTTATGAT 57.434 29.630 2.39 0.00 43.27 2.45
2217 2401 2.500098 CCTACAGGTAGCTGTTGCCTTA 59.500 50.000 30.71 12.29 40.31 2.69
2258 2442 4.648307 GCCTACCCTCTGCTTAGTTTACTA 59.352 45.833 0.00 0.00 0.00 1.82
2650 2883 3.433740 GGGATGACAAGGAGTACATTCCC 60.434 52.174 0.00 0.00 38.02 3.97
2852 3139 4.235360 CCTCGTACAGTGTGGTTAGAAAG 58.765 47.826 5.88 0.00 0.00 2.62
3041 3330 2.423577 ACGTTCCTTGCTGTGATTACC 58.576 47.619 0.00 0.00 0.00 2.85
3134 3435 1.078918 GCCCATGGAAGCAAAAGGC 60.079 57.895 15.22 0.00 45.30 4.35
3197 3498 7.916977 TCAGCAATGCATATTTTGATGTCTAAC 59.083 33.333 13.85 0.00 39.56 2.34
3283 3590 4.098914 TGATTGCCAACCCAGGTATATC 57.901 45.455 0.00 0.00 0.00 1.63
3310 3617 3.297736 CTGGAACCGGACCTAGTATCTT 58.702 50.000 9.46 0.00 0.00 2.40
3315 3622 3.924922 ACCGGACCTAGTATCTTGGATT 58.075 45.455 9.46 0.00 31.18 3.01
3476 3833 1.656652 CAGGTAGGTTCTGATTGCCG 58.343 55.000 0.00 0.00 34.36 5.69
3478 3835 1.906574 AGGTAGGTTCTGATTGCCGAA 59.093 47.619 0.00 0.00 0.00 4.30
3486 3843 4.636206 GGTTCTGATTGCCGAATAACTCTT 59.364 41.667 0.00 0.00 0.00 2.85
3487 3844 5.447818 GGTTCTGATTGCCGAATAACTCTTG 60.448 44.000 0.00 0.00 0.00 3.02
3488 3845 4.832248 TCTGATTGCCGAATAACTCTTGT 58.168 39.130 0.00 0.00 0.00 3.16
3489 3846 4.870426 TCTGATTGCCGAATAACTCTTGTC 59.130 41.667 0.00 0.00 0.00 3.18
3496 3853 4.631813 GCCGAATAACTCTTGTCATTCTGT 59.368 41.667 0.00 0.00 0.00 3.41
3598 3955 1.302752 TGACGATGCTGCTTTGGCT 60.303 52.632 9.74 0.00 39.59 4.75
3637 3994 0.033208 CCTGGGCCAAGCATAAGGAA 60.033 55.000 8.04 0.00 0.00 3.36
3645 4002 3.565902 GCCAAGCATAAGGAAGTATGGTC 59.434 47.826 0.00 0.00 40.43 4.02
3655 4012 9.173021 CATAAGGAAGTATGGTCACATTTTACA 57.827 33.333 0.00 0.00 38.53 2.41
3670 4027 9.143631 TCACATTTTACATAGCATCATCTATCG 57.856 33.333 0.00 0.00 0.00 2.92
3892 4259 9.204570 GTTTATCAATCTGTGTGTTAGTGTACT 57.795 33.333 0.00 0.00 0.00 2.73
3895 4262 6.578944 TCAATCTGTGTGTTAGTGTACTTGT 58.421 36.000 0.00 0.00 0.00 3.16
3902 4269 8.046294 TGTGTGTTAGTGTACTTGTCATTTTT 57.954 30.769 0.00 0.00 0.00 1.94
3905 4272 7.278203 TGTGTTAGTGTACTTGTCATTTTTCGA 59.722 33.333 0.00 0.00 0.00 3.71
3983 4350 9.727627 GGAAGCTAAATTAAATCTGAACAGATG 57.272 33.333 16.46 4.62 46.75 2.90
4004 4376 4.597004 TGTAGGTCCTGTCACTACCTTAG 58.403 47.826 0.00 0.00 40.82 2.18
4005 4377 3.829728 AGGTCCTGTCACTACCTTAGT 57.170 47.619 0.00 0.00 40.82 2.24
4007 4379 2.422832 GGTCCTGTCACTACCTTAGTCG 59.577 54.545 0.00 0.00 36.76 4.18
4008 4380 3.080319 GTCCTGTCACTACCTTAGTCGT 58.920 50.000 0.00 0.00 36.76 4.34
4043 4418 6.753279 CCACTTCAATAAATGCAACCATAGTG 59.247 38.462 0.00 0.00 32.10 2.74
4070 4445 8.927411 TGACCAGAAGTCTAATTGATATCATCA 58.073 33.333 6.17 0.00 46.46 3.07
4071 4446 9.770097 GACCAGAAGTCTAATTGATATCATCAA 57.230 33.333 6.17 4.19 46.18 2.57
4095 4472 9.161629 CAATTTCTGGTATATGTCTGTTGTGTA 57.838 33.333 0.00 0.00 0.00 2.90
4112 4489 4.513442 TGTGTAATGCCTGTCAATACCTC 58.487 43.478 0.00 0.00 31.55 3.85
4113 4490 4.225042 TGTGTAATGCCTGTCAATACCTCT 59.775 41.667 0.00 0.00 31.55 3.69
4114 4491 5.186198 GTGTAATGCCTGTCAATACCTCTT 58.814 41.667 0.00 0.00 31.55 2.85
4116 4493 4.851639 AATGCCTGTCAATACCTCTTCT 57.148 40.909 0.00 0.00 0.00 2.85
4117 4494 3.895232 TGCCTGTCAATACCTCTTCTC 57.105 47.619 0.00 0.00 0.00 2.87
4118 4495 3.445008 TGCCTGTCAATACCTCTTCTCT 58.555 45.455 0.00 0.00 0.00 3.10
4120 4497 4.187694 GCCTGTCAATACCTCTTCTCTTG 58.812 47.826 0.00 0.00 0.00 3.02
4121 4498 4.764172 CCTGTCAATACCTCTTCTCTTGG 58.236 47.826 0.00 0.00 0.00 3.61
4123 4500 5.280215 CCTGTCAATACCTCTTCTCTTGGTT 60.280 44.000 0.00 0.00 35.48 3.67
4124 4501 6.070767 CCTGTCAATACCTCTTCTCTTGGTTA 60.071 42.308 0.00 0.00 35.48 2.85
4125 4502 7.311092 TGTCAATACCTCTTCTCTTGGTTAA 57.689 36.000 0.00 0.00 35.48 2.01
4131 4515 6.394345 ACCTCTTCTCTTGGTTAATGGAAT 57.606 37.500 0.00 0.00 0.00 3.01
4184 4568 7.655490 ACTATTAGACTTGTTGTACTGTTCGT 58.345 34.615 0.00 0.00 0.00 3.85
4196 4580 0.861837 CTGTTCGTTGTGAGTGAGCC 59.138 55.000 0.00 0.00 0.00 4.70
4197 4581 0.464036 TGTTCGTTGTGAGTGAGCCT 59.536 50.000 0.00 0.00 0.00 4.58
4208 4592 6.048732 TGTGAGTGAGCCTGTTATTGATTA 57.951 37.500 0.00 0.00 0.00 1.75
4289 4673 2.164422 GGATGTAAGCTTTGGCCTGAAC 59.836 50.000 3.20 0.00 39.73 3.18
4301 4688 4.164843 TGGCCTGAACCCTAATGTTATC 57.835 45.455 3.32 0.00 0.00 1.75
4306 4693 5.126067 CCTGAACCCTAATGTTATCACCTG 58.874 45.833 0.00 0.00 0.00 4.00
4313 4700 6.158695 ACCCTAATGTTATCACCTGTCAGAAT 59.841 38.462 0.00 0.00 0.00 2.40
4454 4841 7.456684 CGTAAGTTGATCTCCTCACTAAATG 57.543 40.000 0.00 0.00 32.17 2.32
4458 4845 6.421485 AGTTGATCTCCTCACTAAATGCATT 58.579 36.000 5.99 5.99 32.17 3.56
4459 4846 6.888632 AGTTGATCTCCTCACTAAATGCATTT 59.111 34.615 26.72 26.72 32.17 2.32
4460 4847 7.395489 AGTTGATCTCCTCACTAAATGCATTTT 59.605 33.333 28.45 10.21 32.17 1.82
4462 4849 7.541162 TGATCTCCTCACTAAATGCATTTTTG 58.459 34.615 28.45 23.50 0.00 2.44
4463 4850 7.394077 TGATCTCCTCACTAAATGCATTTTTGA 59.606 33.333 28.45 25.78 0.00 2.69
4464 4851 6.913170 TCTCCTCACTAAATGCATTTTTGAC 58.087 36.000 28.45 0.00 0.00 3.18
4478 4873 8.830201 TGCATTTTTGACTTATAATTTGCTGT 57.170 26.923 0.00 0.00 0.00 4.40
4486 4881 8.856153 TGACTTATAATTTGCTGTTCCTGTTA 57.144 30.769 0.00 0.00 0.00 2.41
4626 5023 6.157645 AGTTGTCTCTCATTATGATGTTCCCT 59.842 38.462 0.00 0.00 34.77 4.20
4793 5206 7.129425 AGTCTCTCTTCATCCTTTGGTACTAT 58.871 38.462 0.00 0.00 0.00 2.12
4797 5210 8.239038 TCTCTTCATCCTTTGGTACTATGTAG 57.761 38.462 0.00 0.00 0.00 2.74
4798 5211 7.839705 TCTCTTCATCCTTTGGTACTATGTAGT 59.160 37.037 0.00 0.00 40.24 2.73
4799 5212 9.132923 CTCTTCATCCTTTGGTACTATGTAGTA 57.867 37.037 0.00 0.00 37.73 1.82
4810 5223 4.516652 ACTATGTAGTACTCCCTCCGTT 57.483 45.455 0.00 0.00 34.13 4.44
4811 5224 4.459330 ACTATGTAGTACTCCCTCCGTTC 58.541 47.826 0.00 0.00 34.13 3.95
4812 5225 2.134789 TGTAGTACTCCCTCCGTTCC 57.865 55.000 0.00 0.00 0.00 3.62
4813 5226 1.355381 TGTAGTACTCCCTCCGTTCCA 59.645 52.381 0.00 0.00 0.00 3.53
4814 5227 2.225091 TGTAGTACTCCCTCCGTTCCAA 60.225 50.000 0.00 0.00 0.00 3.53
4815 5228 2.019807 AGTACTCCCTCCGTTCCAAA 57.980 50.000 0.00 0.00 0.00 3.28
4816 5229 2.547990 AGTACTCCCTCCGTTCCAAAT 58.452 47.619 0.00 0.00 0.00 2.32
4817 5230 2.910977 AGTACTCCCTCCGTTCCAAATT 59.089 45.455 0.00 0.00 0.00 1.82
4818 5231 4.098894 AGTACTCCCTCCGTTCCAAATTA 58.901 43.478 0.00 0.00 0.00 1.40
4819 5232 3.345508 ACTCCCTCCGTTCCAAATTAC 57.654 47.619 0.00 0.00 0.00 1.89
4820 5233 2.910977 ACTCCCTCCGTTCCAAATTACT 59.089 45.455 0.00 0.00 0.00 2.24
4821 5234 3.055312 ACTCCCTCCGTTCCAAATTACTC 60.055 47.826 0.00 0.00 0.00 2.59
4822 5235 2.093869 TCCCTCCGTTCCAAATTACTCG 60.094 50.000 0.00 0.00 0.00 4.18
4823 5236 2.354403 CCCTCCGTTCCAAATTACTCGT 60.354 50.000 0.00 0.00 0.00 4.18
4824 5237 3.119029 CCCTCCGTTCCAAATTACTCGTA 60.119 47.826 0.00 0.00 0.00 3.43
4825 5238 4.110482 CCTCCGTTCCAAATTACTCGTAG 58.890 47.826 0.00 0.00 0.00 3.51
4826 5239 3.514645 TCCGTTCCAAATTACTCGTAGC 58.485 45.455 0.00 0.00 0.00 3.58
4827 5240 3.056678 TCCGTTCCAAATTACTCGTAGCA 60.057 43.478 0.00 0.00 0.00 3.49
4828 5241 3.306166 CCGTTCCAAATTACTCGTAGCAG 59.694 47.826 0.00 0.00 0.00 4.24
4829 5242 4.171005 CGTTCCAAATTACTCGTAGCAGA 58.829 43.478 0.00 0.00 0.00 4.26
4830 5243 4.624024 CGTTCCAAATTACTCGTAGCAGAA 59.376 41.667 0.00 0.00 0.00 3.02
4831 5244 5.119588 CGTTCCAAATTACTCGTAGCAGAAA 59.880 40.000 0.00 0.00 0.00 2.52
4832 5245 6.183360 CGTTCCAAATTACTCGTAGCAGAAAT 60.183 38.462 0.00 0.00 0.00 2.17
4833 5246 6.662414 TCCAAATTACTCGTAGCAGAAATG 57.338 37.500 0.00 0.00 0.00 2.32
4834 5247 5.584649 TCCAAATTACTCGTAGCAGAAATGG 59.415 40.000 0.00 0.00 0.00 3.16
4835 5248 5.584649 CCAAATTACTCGTAGCAGAAATGGA 59.415 40.000 0.00 0.00 0.00 3.41
4836 5249 6.260936 CCAAATTACTCGTAGCAGAAATGGAT 59.739 38.462 0.00 0.00 0.00 3.41
4837 5250 6.851222 AATTACTCGTAGCAGAAATGGATG 57.149 37.500 0.00 0.00 0.00 3.51
4838 5251 3.895232 ACTCGTAGCAGAAATGGATGT 57.105 42.857 0.00 0.00 0.00 3.06
4839 5252 6.459670 TTACTCGTAGCAGAAATGGATGTA 57.540 37.500 0.00 0.00 0.00 2.29
4840 5253 5.537300 ACTCGTAGCAGAAATGGATGTAT 57.463 39.130 0.00 0.00 0.00 2.29
4841 5254 5.533482 ACTCGTAGCAGAAATGGATGTATC 58.467 41.667 0.00 0.00 0.00 2.24
4842 5255 5.303078 ACTCGTAGCAGAAATGGATGTATCT 59.697 40.000 0.00 0.00 0.00 1.98
4843 5256 6.490381 ACTCGTAGCAGAAATGGATGTATCTA 59.510 38.462 0.00 0.00 0.00 1.98
4844 5257 6.914259 TCGTAGCAGAAATGGATGTATCTAG 58.086 40.000 0.00 0.00 0.00 2.43
4845 5258 6.715264 TCGTAGCAGAAATGGATGTATCTAGA 59.285 38.462 0.00 0.00 0.00 2.43
4846 5259 7.230712 TCGTAGCAGAAATGGATGTATCTAGAA 59.769 37.037 0.00 0.00 0.00 2.10
4847 5260 7.867909 CGTAGCAGAAATGGATGTATCTAGAAA 59.132 37.037 0.00 0.00 0.00 2.52
4848 5261 9.717942 GTAGCAGAAATGGATGTATCTAGAAAT 57.282 33.333 0.00 0.00 0.00 2.17
4875 5288 8.880991 AAATACATCTAGATACATCCGTACCT 57.119 34.615 4.54 0.00 0.00 3.08
4876 5289 7.867305 ATACATCTAGATACATCCGTACCTG 57.133 40.000 4.54 0.00 0.00 4.00
4877 5290 4.459685 ACATCTAGATACATCCGTACCTGC 59.540 45.833 4.54 0.00 0.00 4.85
4878 5291 3.418995 TCTAGATACATCCGTACCTGCC 58.581 50.000 0.00 0.00 0.00 4.85
4879 5292 2.082140 AGATACATCCGTACCTGCCA 57.918 50.000 0.00 0.00 0.00 4.92
4880 5293 1.687123 AGATACATCCGTACCTGCCAC 59.313 52.381 0.00 0.00 0.00 5.01
4881 5294 0.756903 ATACATCCGTACCTGCCACC 59.243 55.000 0.00 0.00 0.00 4.61
4882 5295 0.615261 TACATCCGTACCTGCCACCA 60.615 55.000 0.00 0.00 0.00 4.17
4883 5296 1.153369 CATCCGTACCTGCCACCAG 60.153 63.158 0.00 0.00 38.85 4.00
4884 5297 1.612442 ATCCGTACCTGCCACCAGT 60.612 57.895 0.00 0.00 37.38 4.00
4885 5298 1.899437 ATCCGTACCTGCCACCAGTG 61.899 60.000 0.00 0.00 37.38 3.66
4886 5299 2.579657 CCGTACCTGCCACCAGTGA 61.580 63.158 0.00 0.00 37.38 3.41
4887 5300 1.596934 CGTACCTGCCACCAGTGAT 59.403 57.895 0.00 0.00 37.38 3.06
4888 5301 0.036388 CGTACCTGCCACCAGTGATT 60.036 55.000 0.00 0.00 37.38 2.57
4889 5302 1.739067 GTACCTGCCACCAGTGATTC 58.261 55.000 0.00 0.00 37.38 2.52
4890 5303 0.249120 TACCTGCCACCAGTGATTCG 59.751 55.000 0.00 0.00 37.38 3.34
4891 5304 1.746615 CCTGCCACCAGTGATTCGG 60.747 63.158 0.00 0.00 37.38 4.30
4892 5305 1.296392 CTGCCACCAGTGATTCGGA 59.704 57.895 0.00 0.00 34.31 4.55
4893 5306 0.321564 CTGCCACCAGTGATTCGGAA 60.322 55.000 0.00 0.00 34.31 4.30
4894 5307 0.605319 TGCCACCAGTGATTCGGAAC 60.605 55.000 0.00 0.00 0.00 3.62
4946 5359 1.066143 AGATGGTGCTTGGTCTAACGG 60.066 52.381 0.00 0.00 0.00 4.44
4990 5403 7.600375 TCATGTTCAGACTTGAGAGTATGTTTC 59.400 37.037 0.00 0.00 43.78 2.78
4991 5404 6.816136 TGTTCAGACTTGAGAGTATGTTTCA 58.184 36.000 1.70 0.00 43.78 2.69
4992 5405 6.925718 TGTTCAGACTTGAGAGTATGTTTCAG 59.074 38.462 1.70 0.00 43.78 3.02
4993 5406 5.473931 TCAGACTTGAGAGTATGTTTCAGC 58.526 41.667 1.70 0.00 43.78 4.26
4994 5407 4.325741 CAGACTTGAGAGTATGTTTCAGCG 59.674 45.833 0.00 0.00 39.64 5.18
4995 5408 4.218635 AGACTTGAGAGTATGTTTCAGCGA 59.781 41.667 0.00 0.00 35.88 4.93
4996 5409 4.238514 ACTTGAGAGTATGTTTCAGCGAC 58.761 43.478 0.00 0.00 33.32 5.19
4998 5411 4.521130 TGAGAGTATGTTTCAGCGACTT 57.479 40.909 0.00 0.00 0.00 3.01
4999 5412 4.237724 TGAGAGTATGTTTCAGCGACTTG 58.762 43.478 0.00 0.00 0.00 3.16
5000 5413 4.022329 TGAGAGTATGTTTCAGCGACTTGA 60.022 41.667 0.00 0.00 0.00 3.02
5001 5414 4.883083 AGAGTATGTTTCAGCGACTTGAA 58.117 39.130 0.00 0.00 35.38 2.69
5002 5415 5.297547 AGAGTATGTTTCAGCGACTTGAAA 58.702 37.500 6.20 6.20 42.93 2.69
5003 5416 5.758296 AGAGTATGTTTCAGCGACTTGAAAA 59.242 36.000 10.44 4.40 45.62 2.29
5004 5417 5.748592 AGTATGTTTCAGCGACTTGAAAAC 58.251 37.500 10.44 7.02 45.62 2.43
5005 5418 3.414549 TGTTTCAGCGACTTGAAAACC 57.585 42.857 10.44 2.98 45.62 3.27
5006 5419 2.098443 TGTTTCAGCGACTTGAAAACCC 59.902 45.455 10.44 2.46 45.62 4.11
5007 5420 0.941542 TTCAGCGACTTGAAAACCCG 59.058 50.000 0.00 0.00 34.32 5.28
5008 5421 0.105224 TCAGCGACTTGAAAACCCGA 59.895 50.000 0.00 0.00 0.00 5.14
5009 5422 0.234884 CAGCGACTTGAAAACCCGAC 59.765 55.000 0.00 0.00 0.00 4.79
5010 5423 0.179067 AGCGACTTGAAAACCCGACA 60.179 50.000 0.00 0.00 0.00 4.35
5011 5424 0.234884 GCGACTTGAAAACCCGACAG 59.765 55.000 0.00 0.00 0.00 3.51
5012 5425 1.860676 CGACTTGAAAACCCGACAGA 58.139 50.000 0.00 0.00 0.00 3.41
5151 5655 9.614792 AGTCATTGATAAATTACACCCTCTAAC 57.385 33.333 0.00 0.00 0.00 2.34
5158 5662 9.262358 GATAAATTACACCCTCTAACAGATGAC 57.738 37.037 0.00 0.00 0.00 3.06
5180 5684 3.004419 CGTGAATAGCTCGGGATCACTTA 59.996 47.826 0.00 0.00 38.54 2.24
5188 5692 6.665992 AGCTCGGGATCACTTATTTACATA 57.334 37.500 0.00 0.00 0.00 2.29
5189 5693 7.246171 AGCTCGGGATCACTTATTTACATAT 57.754 36.000 0.00 0.00 0.00 1.78
5190 5694 7.099764 AGCTCGGGATCACTTATTTACATATG 58.900 38.462 0.00 0.00 0.00 1.78
5191 5695 7.039011 AGCTCGGGATCACTTATTTACATATGA 60.039 37.037 10.38 0.00 0.00 2.15
5192 5696 7.276658 GCTCGGGATCACTTATTTACATATGAG 59.723 40.741 10.38 0.00 0.00 2.90
5193 5697 8.417273 TCGGGATCACTTATTTACATATGAGA 57.583 34.615 10.38 0.00 0.00 3.27
5194 5698 9.035890 TCGGGATCACTTATTTACATATGAGAT 57.964 33.333 10.38 2.88 0.00 2.75
5195 5699 9.091784 CGGGATCACTTATTTACATATGAGATG 57.908 37.037 10.38 0.00 0.00 2.90
5197 5701 8.887717 GGATCACTTATTTACATATGAGATGGC 58.112 37.037 10.38 0.00 0.00 4.40
5198 5702 9.440773 GATCACTTATTTACATATGAGATGGCA 57.559 33.333 10.38 0.00 0.00 4.92
5231 5735 7.172361 GCCTCCTTCAATACTTCAATAGATGAC 59.828 40.741 0.00 0.00 37.92 3.06
5272 5776 7.956328 TTACTCCAGATTTGCTCTAGTAGAA 57.044 36.000 0.64 0.00 30.38 2.10
5301 5808 4.693566 AGCACTTGATGATGCAAATTTTGG 59.306 37.500 10.96 0.00 44.59 3.28
5363 5870 3.610786 CATCAAGTGATGCTCTGATGC 57.389 47.619 8.29 0.00 44.44 3.91
5364 5871 3.206964 CATCAAGTGATGCTCTGATGCT 58.793 45.455 8.29 0.00 44.44 3.79
5365 5872 4.377897 CATCAAGTGATGCTCTGATGCTA 58.622 43.478 8.29 0.00 44.44 3.49
5366 5873 4.476628 TCAAGTGATGCTCTGATGCTAA 57.523 40.909 0.00 0.00 0.00 3.09
5367 5874 5.032327 TCAAGTGATGCTCTGATGCTAAT 57.968 39.130 0.00 0.00 0.00 1.73
5368 5875 5.434408 TCAAGTGATGCTCTGATGCTAATT 58.566 37.500 0.00 0.00 0.00 1.40
5369 5876 5.884232 TCAAGTGATGCTCTGATGCTAATTT 59.116 36.000 0.00 0.00 0.00 1.82
5370 5877 5.752892 AGTGATGCTCTGATGCTAATTTG 57.247 39.130 0.00 0.00 0.00 2.32
5372 5879 4.577693 GTGATGCTCTGATGCTAATTTGGA 59.422 41.667 0.00 0.00 0.00 3.53
5373 5880 4.820173 TGATGCTCTGATGCTAATTTGGAG 59.180 41.667 0.00 0.00 0.00 3.86
5374 5881 2.947652 TGCTCTGATGCTAATTTGGAGC 59.052 45.455 0.00 0.00 43.14 4.70
5405 5914 1.581934 TGCCACGAAGTCAAGAACAG 58.418 50.000 0.00 0.00 41.61 3.16
5412 5921 3.126831 CGAAGTCAAGAACAGTCAAGCT 58.873 45.455 0.00 0.00 0.00 3.74
5413 5922 3.183373 CGAAGTCAAGAACAGTCAAGCTC 59.817 47.826 0.00 0.00 0.00 4.09
5414 5923 3.827008 AGTCAAGAACAGTCAAGCTCA 57.173 42.857 0.00 0.00 0.00 4.26
5416 5925 4.517285 AGTCAAGAACAGTCAAGCTCAAA 58.483 39.130 0.00 0.00 0.00 2.69
5417 5926 5.128919 AGTCAAGAACAGTCAAGCTCAAAT 58.871 37.500 0.00 0.00 0.00 2.32
5418 5927 6.291377 AGTCAAGAACAGTCAAGCTCAAATA 58.709 36.000 0.00 0.00 0.00 1.40
5419 5928 6.203723 AGTCAAGAACAGTCAAGCTCAAATAC 59.796 38.462 0.00 0.00 0.00 1.89
5420 5929 6.017934 GTCAAGAACAGTCAAGCTCAAATACA 60.018 38.462 0.00 0.00 0.00 2.29
5424 6000 4.718961 ACAGTCAAGCTCAAATACACCTT 58.281 39.130 0.00 0.00 0.00 3.50
5444 6026 8.998377 ACACCTTAACAAAATGCAATAATTTCC 58.002 29.630 0.00 0.00 0.00 3.13
5451 6033 8.042944 ACAAAATGCAATAATTTCCAACATCC 57.957 30.769 0.00 0.00 0.00 3.51
5461 6043 9.801873 AATAATTTCCAACATCCTGTAAAATCG 57.198 29.630 0.00 0.00 0.00 3.34
5472 6054 9.621629 ACATCCTGTAAAATCGGATAAAATACA 57.378 29.630 0.00 0.00 35.84 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 6.168270 TCCCACAACAAAAAGAAATTAGGG 57.832 37.500 0.00 0.00 0.00 3.53
2 3 6.650390 CCATCCCACAACAAAAAGAAATTAGG 59.350 38.462 0.00 0.00 0.00 2.69
4 5 6.327626 TCCCATCCCACAACAAAAAGAAATTA 59.672 34.615 0.00 0.00 0.00 1.40
6 7 4.657969 TCCCATCCCACAACAAAAAGAAAT 59.342 37.500 0.00 0.00 0.00 2.17
7 8 4.033709 TCCCATCCCACAACAAAAAGAAA 58.966 39.130 0.00 0.00 0.00 2.52
8 9 3.647636 TCCCATCCCACAACAAAAAGAA 58.352 40.909 0.00 0.00 0.00 2.52
11 12 4.230455 AGAATCCCATCCCACAACAAAAA 58.770 39.130 0.00 0.00 0.00 1.94
12 13 3.831911 GAGAATCCCATCCCACAACAAAA 59.168 43.478 0.00 0.00 0.00 2.44
13 14 3.430453 GAGAATCCCATCCCACAACAAA 58.570 45.455 0.00 0.00 0.00 2.83
14 15 2.617788 CGAGAATCCCATCCCACAACAA 60.618 50.000 0.00 0.00 0.00 2.83
15 16 1.065491 CGAGAATCCCATCCCACAACA 60.065 52.381 0.00 0.00 0.00 3.33
16 17 1.065418 ACGAGAATCCCATCCCACAAC 60.065 52.381 0.00 0.00 0.00 3.32
17 18 1.209504 GACGAGAATCCCATCCCACAA 59.790 52.381 0.00 0.00 0.00 3.33
18 19 0.830648 GACGAGAATCCCATCCCACA 59.169 55.000 0.00 0.00 0.00 4.17
19 20 0.830648 TGACGAGAATCCCATCCCAC 59.169 55.000 0.00 0.00 0.00 4.61
20 21 1.123077 CTGACGAGAATCCCATCCCA 58.877 55.000 0.00 0.00 0.00 4.37
21 22 0.394565 CCTGACGAGAATCCCATCCC 59.605 60.000 0.00 0.00 0.00 3.85
22 23 0.250081 GCCTGACGAGAATCCCATCC 60.250 60.000 0.00 0.00 0.00 3.51
23 24 3.297391 GCCTGACGAGAATCCCATC 57.703 57.895 0.00 0.00 0.00 3.51
35 36 2.223711 ACAACAAAATGGAACGCCTGAC 60.224 45.455 0.00 0.00 34.31 3.51
36 37 2.028130 ACAACAAAATGGAACGCCTGA 58.972 42.857 0.00 0.00 34.31 3.86
37 38 2.507339 ACAACAAAATGGAACGCCTG 57.493 45.000 0.00 0.00 34.31 4.85
38 39 2.952978 TGTACAACAAAATGGAACGCCT 59.047 40.909 0.00 0.00 34.31 5.52
39 40 3.357166 TGTACAACAAAATGGAACGCC 57.643 42.857 0.00 0.00 0.00 5.68
40 41 4.356289 AGTTGTACAACAAAATGGAACGC 58.644 39.130 33.93 8.44 40.15 4.84
41 42 6.518395 CGATAGTTGTACAACAAAATGGAACG 59.482 38.462 33.93 21.55 40.15 3.95
42 43 7.577979 TCGATAGTTGTACAACAAAATGGAAC 58.422 34.615 33.93 16.03 40.15 3.62
43 44 7.094975 CCTCGATAGTTGTACAACAAAATGGAA 60.095 37.037 33.93 14.42 40.15 3.53
44 45 6.370442 CCTCGATAGTTGTACAACAAAATGGA 59.630 38.462 33.93 26.32 40.15 3.41
45 46 6.403200 CCCTCGATAGTTGTACAACAAAATGG 60.403 42.308 33.93 25.96 40.15 3.16
46 47 6.148811 ACCCTCGATAGTTGTACAACAAAATG 59.851 38.462 33.93 21.21 40.15 2.32
47 48 6.148811 CACCCTCGATAGTTGTACAACAAAAT 59.851 38.462 33.93 24.66 40.15 1.82
48 49 5.467399 CACCCTCGATAGTTGTACAACAAAA 59.533 40.000 33.93 21.68 40.15 2.44
49 50 4.992319 CACCCTCGATAGTTGTACAACAAA 59.008 41.667 33.93 23.87 40.15 2.83
50 51 4.561938 CCACCCTCGATAGTTGTACAACAA 60.562 45.833 33.93 16.24 43.47 2.83
51 52 3.056393 CCACCCTCGATAGTTGTACAACA 60.056 47.826 33.93 22.35 43.47 3.33
52 53 3.518590 CCACCCTCGATAGTTGTACAAC 58.481 50.000 27.72 27.72 41.45 3.32
53 54 2.093869 GCCACCCTCGATAGTTGTACAA 60.094 50.000 3.59 3.59 37.40 2.41
54 55 1.479323 GCCACCCTCGATAGTTGTACA 59.521 52.381 0.00 0.00 37.40 2.90
55 56 1.479323 TGCCACCCTCGATAGTTGTAC 59.521 52.381 0.00 0.00 37.40 2.90
56 57 1.855295 TGCCACCCTCGATAGTTGTA 58.145 50.000 0.00 0.00 37.40 2.41
57 58 0.981183 TTGCCACCCTCGATAGTTGT 59.019 50.000 0.00 0.00 37.40 3.32
58 59 2.332063 ATTGCCACCCTCGATAGTTG 57.668 50.000 0.00 0.00 37.40 3.16
59 60 2.026262 ACAATTGCCACCCTCGATAGTT 60.026 45.455 5.05 0.00 37.40 2.24
60 61 1.559682 ACAATTGCCACCCTCGATAGT 59.440 47.619 5.05 0.00 37.40 2.12
61 62 2.332063 ACAATTGCCACCCTCGATAG 57.668 50.000 5.05 0.00 0.00 2.08
62 63 2.364632 CAACAATTGCCACCCTCGATA 58.635 47.619 5.05 0.00 0.00 2.92
63 64 1.176527 CAACAATTGCCACCCTCGAT 58.823 50.000 5.05 0.00 0.00 3.59
64 65 2.639970 CAACAATTGCCACCCTCGA 58.360 52.632 5.05 0.00 0.00 4.04
74 75 1.602668 CCTCCCAACACGCAACAATTG 60.603 52.381 3.24 3.24 0.00 2.32
75 76 0.673437 CCTCCCAACACGCAACAATT 59.327 50.000 0.00 0.00 0.00 2.32
76 77 1.178534 CCCTCCCAACACGCAACAAT 61.179 55.000 0.00 0.00 0.00 2.71
77 78 1.826054 CCCTCCCAACACGCAACAA 60.826 57.895 0.00 0.00 0.00 2.83
78 79 2.203280 CCCTCCCAACACGCAACA 60.203 61.111 0.00 0.00 0.00 3.33
79 80 3.670377 GCCCTCCCAACACGCAAC 61.670 66.667 0.00 0.00 0.00 4.17
80 81 4.966787 GGCCCTCCCAACACGCAA 62.967 66.667 0.00 0.00 0.00 4.85
84 85 4.740822 ATGCGGCCCTCCCAACAC 62.741 66.667 0.00 0.00 0.00 3.32
85 86 4.738998 CATGCGGCCCTCCCAACA 62.739 66.667 0.00 0.00 0.00 3.33
86 87 4.740822 ACATGCGGCCCTCCCAAC 62.741 66.667 0.00 0.00 0.00 3.77
87 88 4.738998 CACATGCGGCCCTCCCAA 62.739 66.667 0.00 0.00 0.00 4.12
98 99 0.248621 GCCCAACTAATCGCACATGC 60.249 55.000 0.00 0.00 37.78 4.06
99 100 1.064505 CAGCCCAACTAATCGCACATG 59.935 52.381 0.00 0.00 0.00 3.21
100 101 1.065491 TCAGCCCAACTAATCGCACAT 60.065 47.619 0.00 0.00 0.00 3.21
101 102 0.323302 TCAGCCCAACTAATCGCACA 59.677 50.000 0.00 0.00 0.00 4.57
102 103 1.668419 ATCAGCCCAACTAATCGCAC 58.332 50.000 0.00 0.00 0.00 5.34
103 104 2.418368 AATCAGCCCAACTAATCGCA 57.582 45.000 0.00 0.00 0.00 5.10
104 105 2.945668 AGAAATCAGCCCAACTAATCGC 59.054 45.455 0.00 0.00 0.00 4.58
105 106 4.752101 CCTAGAAATCAGCCCAACTAATCG 59.248 45.833 0.00 0.00 0.00 3.34
106 107 5.930135 TCCTAGAAATCAGCCCAACTAATC 58.070 41.667 0.00 0.00 0.00 1.75
107 108 5.667626 TCTCCTAGAAATCAGCCCAACTAAT 59.332 40.000 0.00 0.00 0.00 1.73
108 109 5.030147 TCTCCTAGAAATCAGCCCAACTAA 58.970 41.667 0.00 0.00 0.00 2.24
109 110 4.620723 TCTCCTAGAAATCAGCCCAACTA 58.379 43.478 0.00 0.00 0.00 2.24
110 111 3.454082 CTCTCCTAGAAATCAGCCCAACT 59.546 47.826 0.00 0.00 0.00 3.16
111 112 3.432890 CCTCTCCTAGAAATCAGCCCAAC 60.433 52.174 0.00 0.00 0.00 3.77
112 113 2.774234 CCTCTCCTAGAAATCAGCCCAA 59.226 50.000 0.00 0.00 0.00 4.12
113 114 2.402564 CCTCTCCTAGAAATCAGCCCA 58.597 52.381 0.00 0.00 0.00 5.36
114 115 1.696884 CCCTCTCCTAGAAATCAGCCC 59.303 57.143 0.00 0.00 0.00 5.19
115 116 1.696884 CCCCTCTCCTAGAAATCAGCC 59.303 57.143 0.00 0.00 0.00 4.85
116 117 1.696884 CCCCCTCTCCTAGAAATCAGC 59.303 57.143 0.00 0.00 0.00 4.26
133 134 3.663025 CACACACAATTCATTTTCCCCC 58.337 45.455 0.00 0.00 0.00 5.40
386 387 4.429854 AGAAGAAAGAGAGTTGCCACTT 57.570 40.909 0.00 0.00 31.22 3.16
387 388 4.429854 AAGAAGAAAGAGAGTTGCCACT 57.570 40.909 0.00 0.00 35.17 4.00
388 389 4.819088 AGAAAGAAGAAAGAGAGTTGCCAC 59.181 41.667 0.00 0.00 0.00 5.01
389 390 5.041191 AGAAAGAAGAAAGAGAGTTGCCA 57.959 39.130 0.00 0.00 0.00 4.92
390 391 5.059833 TGAGAAAGAAGAAAGAGAGTTGCC 58.940 41.667 0.00 0.00 0.00 4.52
391 392 6.610741 TTGAGAAAGAAGAAAGAGAGTTGC 57.389 37.500 0.00 0.00 0.00 4.17
392 393 7.383572 TCGATTGAGAAAGAAGAAAGAGAGTTG 59.616 37.037 0.00 0.00 0.00 3.16
393 394 7.437748 TCGATTGAGAAAGAAGAAAGAGAGTT 58.562 34.615 0.00 0.00 0.00 3.01
394 395 6.987386 TCGATTGAGAAAGAAGAAAGAGAGT 58.013 36.000 0.00 0.00 0.00 3.24
395 396 8.477984 AATCGATTGAGAAAGAAGAAAGAGAG 57.522 34.615 10.50 0.00 0.00 3.20
396 397 9.579768 CTAATCGATTGAGAAAGAAGAAAGAGA 57.420 33.333 20.87 0.00 0.00 3.10
397 398 8.816144 CCTAATCGATTGAGAAAGAAGAAAGAG 58.184 37.037 20.87 3.91 0.00 2.85
398 399 8.314751 ACCTAATCGATTGAGAAAGAAGAAAGA 58.685 33.333 20.87 0.00 0.00 2.52
399 400 8.485976 ACCTAATCGATTGAGAAAGAAGAAAG 57.514 34.615 20.87 4.96 0.00 2.62
400 401 8.848474 AACCTAATCGATTGAGAAAGAAGAAA 57.152 30.769 20.87 0.00 0.00 2.52
472 476 2.158310 TCACGGATCTAGGATGGATGGT 60.158 50.000 0.00 0.00 35.97 3.55
483 487 3.706698 CGAAAGCAGAATCACGGATCTA 58.293 45.455 0.00 0.00 0.00 1.98
541 545 2.644555 GATGGGTGATCGGTCGGTGG 62.645 65.000 0.00 0.00 0.00 4.61
543 547 2.432300 GGATGGGTGATCGGTCGGT 61.432 63.158 0.00 0.00 30.87 4.69
545 549 1.202582 GATAGGATGGGTGATCGGTCG 59.797 57.143 0.00 0.00 30.87 4.79
547 551 1.645710 GGATAGGATGGGTGATCGGT 58.354 55.000 0.00 0.00 30.87 4.69
548 552 0.532573 CGGATAGGATGGGTGATCGG 59.467 60.000 0.00 0.00 30.87 4.18
549 553 0.108615 GCGGATAGGATGGGTGATCG 60.109 60.000 0.00 0.00 30.87 3.69
550 554 0.250513 GGCGGATAGGATGGGTGATC 59.749 60.000 0.00 0.00 0.00 2.92
551 555 1.201429 GGGCGGATAGGATGGGTGAT 61.201 60.000 0.00 0.00 0.00 3.06
552 556 1.841556 GGGCGGATAGGATGGGTGA 60.842 63.158 0.00 0.00 0.00 4.02
553 557 2.146724 TGGGCGGATAGGATGGGTG 61.147 63.158 0.00 0.00 0.00 4.61
618 651 3.745799 TGGTAAAATGCGGAGTTTCTGA 58.254 40.909 5.41 0.00 0.00 3.27
619 652 4.701956 ATGGTAAAATGCGGAGTTTCTG 57.298 40.909 5.41 0.00 0.00 3.02
673 706 2.048603 GTCGGTAGTGCGGGTAGGT 61.049 63.158 0.00 0.00 0.00 3.08
674 707 1.722636 GAGTCGGTAGTGCGGGTAGG 61.723 65.000 0.00 0.00 0.00 3.18
676 709 2.108514 CGAGTCGGTAGTGCGGGTA 61.109 63.158 4.10 0.00 0.00 3.69
679 712 4.849329 GGCGAGTCGGTAGTGCGG 62.849 72.222 15.52 0.00 0.00 5.69
684 717 1.515736 GGTTTCGGCGAGTCGGTAG 60.516 63.158 15.52 0.00 0.00 3.18
685 718 2.568090 GGTTTCGGCGAGTCGGTA 59.432 61.111 15.52 0.00 0.00 4.02
711 744 4.653888 AGTCCAAAACCGGCCGGG 62.654 66.667 44.99 28.31 43.62 5.73
712 745 3.361977 CAGTCCAAAACCGGCCGG 61.362 66.667 42.17 42.17 42.03 6.13
714 747 1.529713 TTCCAGTCCAAAACCGGCC 60.530 57.895 0.00 0.00 0.00 6.13
715 748 1.658114 GTTCCAGTCCAAAACCGGC 59.342 57.895 0.00 0.00 0.00 6.13
718 751 4.262292 GGTAAATGGTTCCAGTCCAAAACC 60.262 45.833 0.00 0.00 42.28 3.27
720 753 4.547671 TGGTAAATGGTTCCAGTCCAAAA 58.452 39.130 0.00 0.00 38.52 2.44
721 754 4.148838 CTGGTAAATGGTTCCAGTCCAAA 58.851 43.478 0.00 0.00 42.42 3.28
723 762 3.433306 CTGGTAAATGGTTCCAGTCCA 57.567 47.619 0.00 0.00 42.42 4.02
731 770 1.680989 GCCCCGCTGGTAAATGGTT 60.681 57.895 0.00 0.00 36.04 3.67
732 771 2.044352 GCCCCGCTGGTAAATGGT 60.044 61.111 0.00 0.00 36.04 3.55
734 773 2.833121 GGGCCCCGCTGGTAAATG 60.833 66.667 12.23 0.00 36.04 2.32
735 774 4.499633 CGGGCCCCGCTGGTAAAT 62.500 66.667 18.66 0.00 41.17 1.40
885 939 1.600916 GCTGCTTAATAGGGGCCCG 60.601 63.158 18.95 2.08 0.00 6.13
953 1008 1.204941 GAGAGCTCGTGGAAGCCTTTA 59.795 52.381 8.37 0.00 43.56 1.85
1069 1132 2.126424 GAAGAAGACGTCGGCGCT 60.126 61.111 10.50 4.64 42.83 5.92
1070 1133 3.179939 GGAAGAAGACGTCGGCGC 61.180 66.667 10.50 0.00 42.83 6.53
1143 1217 2.159240 CCACTGCATAGTAGCACGAGAA 60.159 50.000 0.00 0.00 40.11 2.87
1145 1219 1.135139 ACCACTGCATAGTAGCACGAG 59.865 52.381 0.00 0.00 40.11 4.18
1155 1229 3.251479 CAGCTCAACTACCACTGCATA 57.749 47.619 0.00 0.00 0.00 3.14
1156 1230 2.105006 CAGCTCAACTACCACTGCAT 57.895 50.000 0.00 0.00 0.00 3.96
1157 1231 3.612517 CAGCTCAACTACCACTGCA 57.387 52.632 0.00 0.00 0.00 4.41
1159 1233 1.436600 CAGCAGCTCAACTACCACTG 58.563 55.000 0.00 0.00 0.00 3.66
1184 1258 1.590238 GATCACAGATCGGAACAAGCG 59.410 52.381 0.00 0.00 0.00 4.68
1198 1272 0.808847 GCTGAGCATCGCAGATCACA 60.809 55.000 0.00 0.00 45.12 3.58
1240 1315 3.982516 ACAGCACTAGATCCCTAACAGA 58.017 45.455 0.00 0.00 0.00 3.41
1262 1340 4.290711 TCAACATGAAGGATGAAGCAGA 57.709 40.909 0.00 0.00 35.80 4.26
1266 1344 7.027760 CAGACAATTCAACATGAAGGATGAAG 58.972 38.462 0.00 0.00 40.05 3.02
1267 1345 6.570957 GCAGACAATTCAACATGAAGGATGAA 60.571 38.462 0.00 2.63 40.05 2.57
1268 1346 5.106038 GCAGACAATTCAACATGAAGGATGA 60.106 40.000 0.00 0.00 40.05 2.92
1269 1347 5.100259 GCAGACAATTCAACATGAAGGATG 58.900 41.667 0.00 1.56 40.05 3.51
1270 1348 4.142534 CGCAGACAATTCAACATGAAGGAT 60.143 41.667 0.00 0.00 40.05 3.24
1271 1349 3.189080 CGCAGACAATTCAACATGAAGGA 59.811 43.478 0.00 0.00 40.05 3.36
1272 1350 3.495193 CGCAGACAATTCAACATGAAGG 58.505 45.455 0.00 0.00 40.05 3.46
1294 1372 1.981256 TGGAGAAGGAAGCACAAACC 58.019 50.000 0.00 0.00 0.00 3.27
1300 1378 2.299867 GCCAAAAATGGAGAAGGAAGCA 59.700 45.455 0.00 0.00 0.00 3.91
1324 1402 2.573009 TCCTCCAGATCACAGCATCAAA 59.427 45.455 0.00 0.00 0.00 2.69
1370 1448 5.060662 TCACGTCATAGAAGAAGAGGTTG 57.939 43.478 0.00 0.00 0.00 3.77
1373 1451 5.518128 CACATTCACGTCATAGAAGAAGAGG 59.482 44.000 0.00 0.00 0.00 3.69
1404 1482 0.680921 CAACGGCCATGGGATCAAGT 60.681 55.000 15.13 0.00 0.00 3.16
1405 1483 2.008268 GCAACGGCCATGGGATCAAG 62.008 60.000 15.13 0.00 0.00 3.02
1429 1508 1.209128 GTTATGCATCAGCTACGCGT 58.791 50.000 19.17 19.17 42.74 6.01
1449 1528 2.676342 CGCCAGTACTAAAACCCACATC 59.324 50.000 0.00 0.00 0.00 3.06
1517 1601 8.408601 CCATAAACTTAGCAGCATCTACAATTT 58.591 33.333 0.00 0.00 0.00 1.82
1527 1611 4.015764 TGATTGCCATAAACTTAGCAGCA 58.984 39.130 0.00 0.00 36.44 4.41
1590 1718 0.243907 CCGGCGGATACTACATGGAG 59.756 60.000 24.41 2.41 0.00 3.86
1592 1720 0.895530 ATCCGGCGGATACTACATGG 59.104 55.000 38.22 1.90 41.16 3.66
1596 1725 5.824904 TTTATAGATCCGGCGGATACTAC 57.175 43.478 38.89 26.41 43.27 2.73
1604 1733 4.713824 TGTCCTATTTATAGATCCGGCG 57.286 45.455 0.00 0.00 32.05 6.46
1606 1735 8.294954 ACACTATGTCCTATTTATAGATCCGG 57.705 38.462 0.00 0.00 32.05 5.14
1630 1759 4.082571 AGTTGACAGAGCAATGCCATTTAC 60.083 41.667 0.00 0.00 0.00 2.01
1635 1764 1.202794 TGAGTTGACAGAGCAATGCCA 60.203 47.619 0.00 0.00 0.00 4.92
1672 1801 3.421844 ACAAGATTTAACTGCCCAGGTC 58.578 45.455 0.00 0.00 0.00 3.85
1716 1845 7.808856 GCCTTACTCGAACTAGTAGGATAAATG 59.191 40.741 9.38 1.36 32.33 2.32
1733 1862 5.147865 CAGATATACAGTTCGCCTTACTCG 58.852 45.833 0.00 0.00 0.00 4.18
1742 1871 7.413475 AAATTAGCAGCAGATATACAGTTCG 57.587 36.000 0.00 0.00 0.00 3.95
1744 1873 8.778358 GCTTAAATTAGCAGCAGATATACAGTT 58.222 33.333 0.00 0.00 40.89 3.16
1771 1900 5.401674 CAGACAGTAAAAGTCCGTCAGTAAC 59.598 44.000 0.00 0.00 36.68 2.50
1775 1904 4.238761 TCAGACAGTAAAAGTCCGTCAG 57.761 45.455 0.00 0.00 36.68 3.51
1783 1912 6.093219 CCAACCATCTGATCAGACAGTAAAAG 59.907 42.308 27.37 15.84 40.75 2.27
1898 2027 4.062293 TGTGTAATTCACCTTTGTCCTCG 58.938 43.478 5.83 0.00 45.61 4.63
1918 2047 1.694696 GTGAGGTGGAGAGAGGTTTGT 59.305 52.381 0.00 0.00 0.00 2.83
1966 2097 9.584008 AATCAAGGCTTCATCAGTAATAATCAT 57.416 29.630 0.00 0.00 0.00 2.45
1967 2098 8.985315 AATCAAGGCTTCATCAGTAATAATCA 57.015 30.769 0.00 0.00 0.00 2.57
1968 2099 9.282569 AGAATCAAGGCTTCATCAGTAATAATC 57.717 33.333 0.00 0.00 0.00 1.75
1969 2100 9.638176 AAGAATCAAGGCTTCATCAGTAATAAT 57.362 29.630 0.00 0.00 0.00 1.28
1970 2101 8.896744 CAAGAATCAAGGCTTCATCAGTAATAA 58.103 33.333 0.00 0.00 0.00 1.40
1972 2103 7.114754 TCAAGAATCAAGGCTTCATCAGTAAT 58.885 34.615 0.00 0.00 0.00 1.89
2217 2401 1.542915 GGCACATCAGCACAAGAACAT 59.457 47.619 0.00 0.00 35.83 2.71
2258 2442 4.734695 GCTGCAGTAAAGAAGCACAAGTTT 60.735 41.667 16.64 0.00 40.09 2.66
2266 2450 5.240713 ACATAATGCTGCAGTAAAGAAGC 57.759 39.130 16.64 0.00 40.79 3.86
2272 2456 4.157656 GGTCCAAACATAATGCTGCAGTAA 59.842 41.667 16.64 4.48 0.00 2.24
2274 2458 2.493278 GGTCCAAACATAATGCTGCAGT 59.507 45.455 16.64 8.41 0.00 4.40
2650 2883 0.526524 GCTTGACGTCCTCAGGATCG 60.527 60.000 14.12 12.50 32.73 3.69
2740 2978 5.474189 AGTGGGTTTAATACAAAGCGCTTAA 59.526 36.000 25.33 12.66 0.00 1.85
2742 2980 3.824443 AGTGGGTTTAATACAAAGCGCTT 59.176 39.130 18.98 18.98 0.00 4.68
2852 3139 8.181904 TGCATAAAAAGAAGATATGGGGATTC 57.818 34.615 0.00 0.00 0.00 2.52
3018 3307 4.092968 GGTAATCACAGCAAGGAACGTTAG 59.907 45.833 0.00 0.00 0.00 2.34
3023 3312 1.130561 GCGGTAATCACAGCAAGGAAC 59.869 52.381 0.00 0.00 44.27 3.62
3041 3330 2.335092 ATCCCAATCCTCAGGCTGCG 62.335 60.000 10.34 2.87 0.00 5.18
3283 3590 0.981943 AGGTCCGGTTCCAGGTAAAG 59.018 55.000 17.60 0.00 0.00 1.85
3356 3663 2.867287 AGATGTCAGAGCATGAGTCG 57.133 50.000 0.00 0.00 39.07 4.18
3476 3833 7.604164 TCCTGAACAGAATGACAAGAGTTATTC 59.396 37.037 3.19 5.33 45.84 1.75
3478 3835 7.009179 TCCTGAACAGAATGACAAGAGTTAT 57.991 36.000 3.19 0.00 39.69 1.89
3486 3843 3.554960 CCGTCTTCCTGAACAGAATGACA 60.555 47.826 3.19 0.00 39.69 3.58
3487 3844 2.996621 CCGTCTTCCTGAACAGAATGAC 59.003 50.000 3.19 0.72 39.69 3.06
3488 3845 2.897326 TCCGTCTTCCTGAACAGAATGA 59.103 45.455 3.19 0.00 39.69 2.57
3489 3846 3.319137 TCCGTCTTCCTGAACAGAATG 57.681 47.619 3.19 0.00 46.00 2.67
3496 3853 5.221561 TGACTATTTGTTCCGTCTTCCTGAA 60.222 40.000 0.00 0.00 0.00 3.02
3598 3955 5.240891 CAGGTCTCTTCAGCAAATGTCTTA 58.759 41.667 0.00 0.00 0.00 2.10
3637 3994 7.992608 TGATGCTATGTAAAATGTGACCATACT 59.007 33.333 0.00 0.00 0.00 2.12
3645 4002 7.901889 GCGATAGATGATGCTATGTAAAATGTG 59.098 37.037 0.00 0.00 39.76 3.21
3655 4012 6.705863 TGTCTATGCGATAGATGATGCTAT 57.294 37.500 8.48 0.00 43.25 2.97
3670 4027 6.798482 TGGATCAACAATCAAATGTCTATGC 58.202 36.000 0.00 0.00 35.96 3.14
3859 4216 5.938125 ACACACAGATTGATAAACAGGGTAC 59.062 40.000 0.00 0.00 0.00 3.34
3892 4259 5.046304 AGAGGGAGAGATCGAAAAATGACAA 60.046 40.000 0.00 0.00 0.00 3.18
3895 4262 5.683876 AAGAGGGAGAGATCGAAAAATGA 57.316 39.130 0.00 0.00 0.00 2.57
3902 4269 2.961741 CCATGAAAGAGGGAGAGATCGA 59.038 50.000 0.00 0.00 0.00 3.59
3905 4272 2.438763 CAGCCATGAAAGAGGGAGAGAT 59.561 50.000 0.00 0.00 0.00 2.75
3983 4350 4.598022 ACTAAGGTAGTGACAGGACCTAC 58.402 47.826 8.34 1.37 42.93 3.18
4004 4376 5.733620 TTGAAGTGGGGGATATATACGAC 57.266 43.478 0.00 0.00 0.00 4.34
4005 4377 8.438618 TTTATTGAAGTGGGGGATATATACGA 57.561 34.615 0.00 0.00 0.00 3.43
4007 4379 8.903820 GCATTTATTGAAGTGGGGGATATATAC 58.096 37.037 0.00 0.00 0.00 1.47
4008 4380 8.619281 TGCATTTATTGAAGTGGGGGATATATA 58.381 33.333 0.00 0.00 0.00 0.86
4043 4418 9.202273 GATGATATCAATTAGACTTCTGGTCAC 57.798 37.037 9.99 0.00 46.72 3.67
4070 4445 9.733556 TTACACAACAGACATATACCAGAAATT 57.266 29.630 0.00 0.00 0.00 1.82
4071 4446 9.905713 ATTACACAACAGACATATACCAGAAAT 57.094 29.630 0.00 0.00 0.00 2.17
4095 4472 4.472833 AGAGAAGAGGTATTGACAGGCATT 59.527 41.667 0.00 0.00 0.00 3.56
4112 4489 9.018582 AGAAAGAATTCCATTAACCAAGAGAAG 57.981 33.333 0.65 0.00 36.12 2.85
4113 4490 8.940397 AGAAAGAATTCCATTAACCAAGAGAA 57.060 30.769 0.65 0.00 36.12 2.87
4114 4491 7.611855 GGAGAAAGAATTCCATTAACCAAGAGA 59.388 37.037 0.65 0.00 36.12 3.10
4116 4493 7.470192 AGGAGAAAGAATTCCATTAACCAAGA 58.530 34.615 0.65 0.00 36.12 3.02
4117 4494 7.709149 AGGAGAAAGAATTCCATTAACCAAG 57.291 36.000 0.65 0.00 36.12 3.61
4118 4495 9.594936 TTTAGGAGAAAGAATTCCATTAACCAA 57.405 29.630 0.65 1.61 36.12 3.67
4124 4501 9.933723 CAACAATTTAGGAGAAAGAATTCCATT 57.066 29.630 0.65 0.00 36.12 3.16
4125 4502 9.093458 ACAACAATTTAGGAGAAAGAATTCCAT 57.907 29.630 0.65 0.00 36.12 3.41
4169 4553 4.092237 CACTCACAACGAACAGTACAACAA 59.908 41.667 0.00 0.00 0.00 2.83
4171 4555 3.861113 TCACTCACAACGAACAGTACAAC 59.139 43.478 0.00 0.00 0.00 3.32
4182 4566 2.148916 TAACAGGCTCACTCACAACG 57.851 50.000 0.00 0.00 0.00 4.10
4184 4568 4.350368 TCAATAACAGGCTCACTCACAA 57.650 40.909 0.00 0.00 0.00 3.33
4225 4609 1.272648 CCTTGGAAGCATCCTGGGAAA 60.273 52.381 9.78 0.00 46.70 3.13
4228 4612 1.755783 GCCTTGGAAGCATCCTGGG 60.756 63.158 17.69 15.42 46.70 4.45
4289 4673 5.614324 TCTGACAGGTGATAACATTAGGG 57.386 43.478 1.81 0.00 0.00 3.53
4301 4688 6.018098 GCTGATCAAGAATATTCTGACAGGTG 60.018 42.308 25.13 17.73 37.65 4.00
4306 4693 7.598493 GGTCTAGCTGATCAAGAATATTCTGAC 59.402 40.741 18.61 15.23 37.65 3.51
4313 4700 8.540507 AGTTTAGGTCTAGCTGATCAAGAATA 57.459 34.615 0.00 0.00 0.00 1.75
4439 4826 7.395489 AGTCAAAAATGCATTTAGTGAGGAGAT 59.605 33.333 26.80 14.59 29.78 2.75
4442 4829 6.899393 AGTCAAAAATGCATTTAGTGAGGA 57.101 33.333 26.80 15.95 29.78 3.71
4452 4839 9.439500 ACAGCAAATTATAAGTCAAAAATGCAT 57.561 25.926 0.00 0.00 32.76 3.96
4454 4841 9.745323 GAACAGCAAATTATAAGTCAAAAATGC 57.255 29.630 0.00 0.00 0.00 3.56
4458 4845 8.637986 ACAGGAACAGCAAATTATAAGTCAAAA 58.362 29.630 0.00 0.00 0.00 2.44
4459 4846 8.177119 ACAGGAACAGCAAATTATAAGTCAAA 57.823 30.769 0.00 0.00 0.00 2.69
4460 4847 7.759489 ACAGGAACAGCAAATTATAAGTCAA 57.241 32.000 0.00 0.00 0.00 3.18
4475 4870 5.048713 GGTGAGGAAACAATAACAGGAACAG 60.049 44.000 0.00 0.00 0.00 3.16
4477 4872 4.217767 GGGTGAGGAAACAATAACAGGAAC 59.782 45.833 0.00 0.00 0.00 3.62
4478 4873 4.141135 TGGGTGAGGAAACAATAACAGGAA 60.141 41.667 0.00 0.00 0.00 3.36
4486 4881 2.597455 CAAGGTGGGTGAGGAAACAAT 58.403 47.619 0.00 0.00 0.00 2.71
4773 5186 8.012957 ACTACATAGTACCAAAGGATGAAGAG 57.987 38.462 0.00 0.00 34.13 2.85
4774 5187 7.973048 ACTACATAGTACCAAAGGATGAAGA 57.027 36.000 0.00 0.00 34.13 2.87
4793 5206 1.355381 TGGAACGGAGGGAGTACTACA 59.645 52.381 7.57 0.00 0.00 2.74
4797 5210 3.345508 AATTTGGAACGGAGGGAGTAC 57.654 47.619 0.00 0.00 0.00 2.73
4798 5211 4.098894 AGTAATTTGGAACGGAGGGAGTA 58.901 43.478 0.00 0.00 0.00 2.59
4799 5212 2.910977 AGTAATTTGGAACGGAGGGAGT 59.089 45.455 0.00 0.00 0.00 3.85
4800 5213 3.532542 GAGTAATTTGGAACGGAGGGAG 58.467 50.000 0.00 0.00 0.00 4.30
4801 5214 2.093869 CGAGTAATTTGGAACGGAGGGA 60.094 50.000 0.00 0.00 0.00 4.20
4802 5215 2.277084 CGAGTAATTTGGAACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
4803 5216 2.968675 ACGAGTAATTTGGAACGGAGG 58.031 47.619 0.00 0.00 0.00 4.30
4804 5217 3.550678 GCTACGAGTAATTTGGAACGGAG 59.449 47.826 0.00 0.00 35.24 4.63
4805 5218 3.056678 TGCTACGAGTAATTTGGAACGGA 60.057 43.478 0.00 0.00 0.00 4.69
4806 5219 3.255725 TGCTACGAGTAATTTGGAACGG 58.744 45.455 0.00 0.00 0.00 4.44
4807 5220 4.171005 TCTGCTACGAGTAATTTGGAACG 58.829 43.478 0.00 0.00 0.00 3.95
4808 5221 6.476243 TTTCTGCTACGAGTAATTTGGAAC 57.524 37.500 0.00 0.00 0.00 3.62
4809 5222 6.093495 CCATTTCTGCTACGAGTAATTTGGAA 59.907 38.462 0.00 0.00 0.00 3.53
4810 5223 5.584649 CCATTTCTGCTACGAGTAATTTGGA 59.415 40.000 0.00 0.00 0.00 3.53
4811 5224 5.584649 TCCATTTCTGCTACGAGTAATTTGG 59.415 40.000 0.00 0.00 0.00 3.28
4812 5225 6.662414 TCCATTTCTGCTACGAGTAATTTG 57.338 37.500 0.00 0.00 0.00 2.32
4813 5226 6.823689 ACATCCATTTCTGCTACGAGTAATTT 59.176 34.615 0.00 0.00 0.00 1.82
4814 5227 6.349300 ACATCCATTTCTGCTACGAGTAATT 58.651 36.000 0.00 0.00 0.00 1.40
4815 5228 5.918608 ACATCCATTTCTGCTACGAGTAAT 58.081 37.500 0.00 0.00 0.00 1.89
4816 5229 5.339008 ACATCCATTTCTGCTACGAGTAA 57.661 39.130 0.00 0.00 0.00 2.24
4817 5230 6.490381 AGATACATCCATTTCTGCTACGAGTA 59.510 38.462 0.00 0.00 0.00 2.59
4818 5231 3.895232 ACATCCATTTCTGCTACGAGT 57.105 42.857 0.00 0.00 0.00 4.18
4819 5232 5.777802 AGATACATCCATTTCTGCTACGAG 58.222 41.667 0.00 0.00 0.00 4.18
4820 5233 5.791336 AGATACATCCATTTCTGCTACGA 57.209 39.130 0.00 0.00 0.00 3.43
4821 5234 6.914259 TCTAGATACATCCATTTCTGCTACG 58.086 40.000 0.00 0.00 0.00 3.51
4822 5235 9.717942 ATTTCTAGATACATCCATTTCTGCTAC 57.282 33.333 0.00 0.00 0.00 3.58
4849 5262 9.310449 AGGTACGGATGTATCTAGATGTATTTT 57.690 33.333 15.79 0.00 40.28 1.82
4850 5263 8.740906 CAGGTACGGATGTATCTAGATGTATTT 58.259 37.037 15.79 0.00 40.09 1.40
4851 5264 7.148052 GCAGGTACGGATGTATCTAGATGTATT 60.148 40.741 15.79 0.00 40.09 1.89
4852 5265 6.319152 GCAGGTACGGATGTATCTAGATGTAT 59.681 42.308 15.79 9.11 40.09 2.29
4853 5266 5.646793 GCAGGTACGGATGTATCTAGATGTA 59.353 44.000 15.79 5.00 40.09 2.29
4854 5267 4.459685 GCAGGTACGGATGTATCTAGATGT 59.540 45.833 15.79 5.98 40.09 3.06
4855 5268 4.142359 GGCAGGTACGGATGTATCTAGATG 60.142 50.000 15.79 0.00 40.09 2.90
4856 5269 4.017808 GGCAGGTACGGATGTATCTAGAT 58.982 47.826 10.73 10.73 40.09 1.98
4857 5270 3.181437 TGGCAGGTACGGATGTATCTAGA 60.181 47.826 0.00 0.00 40.09 2.43
4858 5271 3.057456 GTGGCAGGTACGGATGTATCTAG 60.057 52.174 0.00 0.00 40.09 2.43
4859 5272 2.889045 GTGGCAGGTACGGATGTATCTA 59.111 50.000 0.00 0.00 40.09 1.98
4860 5273 1.687123 GTGGCAGGTACGGATGTATCT 59.313 52.381 0.00 0.00 42.88 1.98
4861 5274 1.270147 GGTGGCAGGTACGGATGTATC 60.270 57.143 0.00 0.00 32.11 2.24
4862 5275 0.756903 GGTGGCAGGTACGGATGTAT 59.243 55.000 0.00 0.00 32.11 2.29
4863 5276 0.615261 TGGTGGCAGGTACGGATGTA 60.615 55.000 0.00 0.00 0.00 2.29
4864 5277 1.899437 CTGGTGGCAGGTACGGATGT 61.899 60.000 0.00 0.00 0.00 3.06
4865 5278 1.153369 CTGGTGGCAGGTACGGATG 60.153 63.158 0.00 0.00 0.00 3.51
4866 5279 1.612442 ACTGGTGGCAGGTACGGAT 60.612 57.895 0.00 0.00 0.00 4.18
4867 5280 2.203728 ACTGGTGGCAGGTACGGA 60.204 61.111 0.00 0.00 0.00 4.69
4868 5281 1.899437 ATCACTGGTGGCAGGTACGG 61.899 60.000 0.70 0.00 0.00 4.02
4869 5282 0.036388 AATCACTGGTGGCAGGTACG 60.036 55.000 0.70 0.00 0.00 3.67
4870 5283 1.739067 GAATCACTGGTGGCAGGTAC 58.261 55.000 0.70 0.00 0.00 3.34
4871 5284 0.249120 CGAATCACTGGTGGCAGGTA 59.751 55.000 0.70 0.00 0.00 3.08
4872 5285 1.003355 CGAATCACTGGTGGCAGGT 60.003 57.895 0.70 0.00 0.00 4.00
4873 5286 1.746615 CCGAATCACTGGTGGCAGG 60.747 63.158 0.70 0.00 0.00 4.85
4874 5287 0.321564 TTCCGAATCACTGGTGGCAG 60.322 55.000 0.70 0.00 0.00 4.85
4875 5288 0.605319 GTTCCGAATCACTGGTGGCA 60.605 55.000 0.70 0.00 0.00 4.92
4876 5289 1.635663 CGTTCCGAATCACTGGTGGC 61.636 60.000 0.70 0.00 0.00 5.01
4877 5290 1.019278 CCGTTCCGAATCACTGGTGG 61.019 60.000 0.70 0.00 0.00 4.61
4878 5291 0.037697 TCCGTTCCGAATCACTGGTG 60.038 55.000 0.00 0.00 0.00 4.17
4879 5292 0.246635 CTCCGTTCCGAATCACTGGT 59.753 55.000 0.00 0.00 0.00 4.00
4880 5293 0.460284 CCTCCGTTCCGAATCACTGG 60.460 60.000 0.00 0.00 0.00 4.00
4881 5294 0.460284 CCCTCCGTTCCGAATCACTG 60.460 60.000 0.00 0.00 0.00 3.66
4882 5295 0.613853 TCCCTCCGTTCCGAATCACT 60.614 55.000 0.00 0.00 0.00 3.41
4883 5296 0.179108 CTCCCTCCGTTCCGAATCAC 60.179 60.000 0.00 0.00 0.00 3.06
4884 5297 0.613853 ACTCCCTCCGTTCCGAATCA 60.614 55.000 0.00 0.00 0.00 2.57
4885 5298 1.066757 GTACTCCCTCCGTTCCGAATC 59.933 57.143 0.00 0.00 0.00 2.52
4886 5299 1.109609 GTACTCCCTCCGTTCCGAAT 58.890 55.000 0.00 0.00 0.00 3.34
4887 5300 0.251297 TGTACTCCCTCCGTTCCGAA 60.251 55.000 0.00 0.00 0.00 4.30
4888 5301 0.033796 ATGTACTCCCTCCGTTCCGA 60.034 55.000 0.00 0.00 0.00 4.55
4889 5302 0.102481 CATGTACTCCCTCCGTTCCG 59.898 60.000 0.00 0.00 0.00 4.30
4890 5303 0.179081 GCATGTACTCCCTCCGTTCC 60.179 60.000 0.00 0.00 0.00 3.62
4891 5304 0.824759 AGCATGTACTCCCTCCGTTC 59.175 55.000 0.00 0.00 0.00 3.95
4892 5305 1.755380 GTAGCATGTACTCCCTCCGTT 59.245 52.381 0.00 0.00 0.00 4.44
4893 5306 1.400737 GTAGCATGTACTCCCTCCGT 58.599 55.000 0.00 0.00 0.00 4.69
4894 5307 0.311165 CGTAGCATGTACTCCCTCCG 59.689 60.000 0.00 0.00 0.00 4.63
4895 5308 1.337387 GTCGTAGCATGTACTCCCTCC 59.663 57.143 0.00 0.00 0.00 4.30
4896 5309 2.033550 CAGTCGTAGCATGTACTCCCTC 59.966 54.545 0.00 0.00 0.00 4.30
4897 5310 2.025155 CAGTCGTAGCATGTACTCCCT 58.975 52.381 0.00 0.00 0.00 4.20
4898 5311 2.022195 TCAGTCGTAGCATGTACTCCC 58.978 52.381 0.00 0.00 0.00 4.30
4899 5312 2.943690 TCTCAGTCGTAGCATGTACTCC 59.056 50.000 0.00 0.00 0.00 3.85
4900 5313 3.544440 CGTCTCAGTCGTAGCATGTACTC 60.544 52.174 0.00 0.00 0.00 2.59
4901 5314 2.352034 CGTCTCAGTCGTAGCATGTACT 59.648 50.000 0.00 0.00 0.00 2.73
4902 5315 2.095532 ACGTCTCAGTCGTAGCATGTAC 59.904 50.000 0.00 0.00 39.78 2.90
4903 5316 2.350804 GACGTCTCAGTCGTAGCATGTA 59.649 50.000 8.70 0.00 41.64 2.29
4904 5317 1.130749 GACGTCTCAGTCGTAGCATGT 59.869 52.381 8.70 0.00 41.64 3.21
4990 5403 0.234884 GTCGGGTTTTCAAGTCGCTG 59.765 55.000 0.00 0.00 0.00 5.18
4991 5404 0.179067 TGTCGGGTTTTCAAGTCGCT 60.179 50.000 0.00 0.00 0.00 4.93
4992 5405 0.234884 CTGTCGGGTTTTCAAGTCGC 59.765 55.000 0.00 0.00 0.00 5.19
4993 5406 1.860676 TCTGTCGGGTTTTCAAGTCG 58.139 50.000 0.00 0.00 0.00 4.18
4994 5407 4.817517 TCTATCTGTCGGGTTTTCAAGTC 58.182 43.478 0.00 0.00 0.00 3.01
4995 5408 4.884668 TCTATCTGTCGGGTTTTCAAGT 57.115 40.909 0.00 0.00 0.00 3.16
4996 5409 4.034510 GCATCTATCTGTCGGGTTTTCAAG 59.965 45.833 0.00 0.00 0.00 3.02
4998 5411 3.055458 TGCATCTATCTGTCGGGTTTTCA 60.055 43.478 0.00 0.00 0.00 2.69
4999 5412 3.309954 GTGCATCTATCTGTCGGGTTTTC 59.690 47.826 0.00 0.00 0.00 2.29
5000 5413 3.270877 GTGCATCTATCTGTCGGGTTTT 58.729 45.455 0.00 0.00 0.00 2.43
5001 5414 2.420129 GGTGCATCTATCTGTCGGGTTT 60.420 50.000 0.00 0.00 0.00 3.27
5002 5415 1.139058 GGTGCATCTATCTGTCGGGTT 59.861 52.381 0.00 0.00 0.00 4.11
5003 5416 0.753262 GGTGCATCTATCTGTCGGGT 59.247 55.000 0.00 0.00 0.00 5.28
5004 5417 0.752658 TGGTGCATCTATCTGTCGGG 59.247 55.000 0.00 0.00 0.00 5.14
5005 5418 1.136891 TGTGGTGCATCTATCTGTCGG 59.863 52.381 0.00 0.00 0.00 4.79
5006 5419 2.196749 GTGTGGTGCATCTATCTGTCG 58.803 52.381 0.00 0.00 0.00 4.35
5007 5420 2.159240 TCGTGTGGTGCATCTATCTGTC 60.159 50.000 0.00 0.00 0.00 3.51
5008 5421 1.824852 TCGTGTGGTGCATCTATCTGT 59.175 47.619 0.00 0.00 0.00 3.41
5009 5422 2.196749 GTCGTGTGGTGCATCTATCTG 58.803 52.381 0.00 0.00 0.00 2.90
5010 5423 1.202302 CGTCGTGTGGTGCATCTATCT 60.202 52.381 0.00 0.00 0.00 1.98
5011 5424 1.200483 CGTCGTGTGGTGCATCTATC 58.800 55.000 0.00 0.00 0.00 2.08
5012 5425 0.815095 TCGTCGTGTGGTGCATCTAT 59.185 50.000 0.00 0.00 0.00 1.98
5103 5516 0.321298 GCTCGGTTGCTCCTGGTTAA 60.321 55.000 0.00 0.00 0.00 2.01
5151 5655 2.389059 CCGAGCTATTCACGTCATCTG 58.611 52.381 0.00 0.00 0.00 2.90
5158 5662 1.338337 AGTGATCCCGAGCTATTCACG 59.662 52.381 0.00 0.00 41.15 4.35
5213 5717 8.642885 GCATCTACGTCATCTATTGAAGTATTG 58.357 37.037 0.00 5.26 44.67 1.90
5231 5735 8.826710 TCTGGAGTAAAAATATTTGCATCTACG 58.173 33.333 0.39 0.00 34.02 3.51
5272 5776 5.710513 TTGCATCATCAAGTGCTTTTACT 57.289 34.783 0.00 0.00 41.78 2.24
5301 5808 2.029844 GAGGACCACGCAGCTTGAC 61.030 63.158 0.00 0.00 0.00 3.18
5357 5864 4.534168 CATTCGCTCCAAATTAGCATCAG 58.466 43.478 0.00 0.00 40.08 2.90
5358 5865 3.316029 CCATTCGCTCCAAATTAGCATCA 59.684 43.478 0.00 0.00 40.08 3.07
5359 5866 3.565482 TCCATTCGCTCCAAATTAGCATC 59.435 43.478 0.00 0.00 40.08 3.91
5360 5867 3.554934 TCCATTCGCTCCAAATTAGCAT 58.445 40.909 0.00 0.00 40.08 3.79
5361 5868 2.997980 TCCATTCGCTCCAAATTAGCA 58.002 42.857 0.00 0.00 40.08 3.49
5363 5870 5.567138 AACTTCCATTCGCTCCAAATTAG 57.433 39.130 0.00 0.00 0.00 1.73
5364 5871 5.708948 CAAACTTCCATTCGCTCCAAATTA 58.291 37.500 0.00 0.00 0.00 1.40
5365 5872 4.559153 CAAACTTCCATTCGCTCCAAATT 58.441 39.130 0.00 0.00 0.00 1.82
5366 5873 3.614870 GCAAACTTCCATTCGCTCCAAAT 60.615 43.478 0.00 0.00 0.00 2.32
5367 5874 2.288152 GCAAACTTCCATTCGCTCCAAA 60.288 45.455 0.00 0.00 0.00 3.28
5368 5875 1.269448 GCAAACTTCCATTCGCTCCAA 59.731 47.619 0.00 0.00 0.00 3.53
5369 5876 0.881118 GCAAACTTCCATTCGCTCCA 59.119 50.000 0.00 0.00 0.00 3.86
5370 5877 0.171231 GGCAAACTTCCATTCGCTCC 59.829 55.000 0.00 0.00 0.00 4.70
5372 5879 0.598065 GTGGCAAACTTCCATTCGCT 59.402 50.000 0.00 0.00 35.81 4.93
5373 5880 0.729140 CGTGGCAAACTTCCATTCGC 60.729 55.000 0.00 0.00 35.81 4.70
5374 5881 0.871722 TCGTGGCAAACTTCCATTCG 59.128 50.000 0.00 0.00 35.81 3.34
5405 5914 6.554334 TGTTAAGGTGTATTTGAGCTTGAC 57.446 37.500 0.00 0.00 37.72 3.18
5418 5927 8.998377 GGAAATTATTGCATTTTGTTAAGGTGT 58.002 29.630 0.00 0.00 0.00 4.16
5419 5928 8.997323 TGGAAATTATTGCATTTTGTTAAGGTG 58.003 29.630 0.00 0.00 31.30 4.00
5420 5929 9.566432 TTGGAAATTATTGCATTTTGTTAAGGT 57.434 25.926 0.00 0.00 36.71 3.50
5496 6314 4.815846 TGAACATATGTTGATGTCCATCCG 59.184 41.667 25.42 0.00 39.16 4.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.