Multiple sequence alignment - TraesCS2D01G546400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G546400 chr2D 100.000 5167 0 0 744 5910 622917612 622922778 0.000000e+00 9542.0
1 TraesCS2D01G546400 chr2D 100.000 551 0 0 1 551 622916869 622917419 0.000000e+00 1018.0
2 TraesCS2D01G546400 chr2D 95.000 40 2 0 5634 5673 195298381 195298420 4.940000e-06 63.9
3 TraesCS2D01G546400 chr2A 91.160 2613 144 50 801 3347 754352816 754355407 0.000000e+00 3465.0
4 TraesCS2D01G546400 chr2A 91.588 2235 119 36 1480 3698 754353542 754355723 0.000000e+00 3022.0
5 TraesCS2D01G546400 chr2A 88.820 805 55 12 3755 4542 754355716 754356502 0.000000e+00 955.0
6 TraesCS2D01G546400 chr2A 92.464 345 19 5 4998 5340 754356948 754357287 2.480000e-133 486.0
7 TraesCS2D01G546400 chr2A 82.857 455 45 14 110 547 754352352 754352790 1.550000e-100 377.0
8 TraesCS2D01G546400 chr2A 92.823 209 9 4 4712 4916 754356613 754356819 1.250000e-76 298.0
9 TraesCS2D01G546400 chr2A 90.152 132 8 3 5747 5878 754357780 754357906 3.660000e-37 167.0
10 TraesCS2D01G546400 chr2A 89.474 133 8 5 5337 5466 754357315 754357444 4.740000e-36 163.0
11 TraesCS2D01G546400 chr2A 95.122 41 2 0 5747 5787 754357704 754357744 1.370000e-06 65.8
12 TraesCS2D01G546400 chr2B 95.169 1304 39 8 1987 3281 765065026 765066314 0.000000e+00 2037.0
13 TraesCS2D01G546400 chr2B 88.965 879 63 15 3770 4615 765066672 765067549 0.000000e+00 1055.0
14 TraesCS2D01G546400 chr2B 91.327 588 39 7 1480 2056 765064452 765065038 0.000000e+00 793.0
15 TraesCS2D01G546400 chr2B 89.134 589 30 13 908 1481 765063855 765064424 0.000000e+00 702.0
16 TraesCS2D01G546400 chr2B 85.684 475 42 14 5420 5878 765068731 765069195 1.490000e-130 477.0
17 TraesCS2D01G546400 chr2B 90.997 311 22 5 3348 3657 765066334 765066639 1.180000e-111 414.0
18 TraesCS2D01G546400 chr2B 90.169 295 29 0 4631 4925 765067628 765067922 9.290000e-103 385.0
19 TraesCS2D01G546400 chr2B 81.109 487 64 15 68 542 765062996 765063466 1.210000e-96 364.0
20 TraesCS2D01G546400 chr2B 86.080 352 27 14 4998 5340 765068046 765068384 5.630000e-95 359.0
21 TraesCS2D01G546400 chr2B 97.222 72 1 1 3695 3765 90006602 90006673 2.890000e-23 121.0
22 TraesCS2D01G546400 chr2B 94.366 71 1 2 5337 5407 765068415 765068482 8.100000e-19 106.0
23 TraesCS2D01G546400 chr2B 97.727 44 1 0 3304 3347 765066315 765066358 6.350000e-10 76.8
24 TraesCS2D01G546400 chr7B 82.776 389 45 15 5498 5878 62791810 62791436 1.590000e-85 327.0
25 TraesCS2D01G546400 chr7B 95.652 69 1 2 3695 3762 714509751 714509684 6.260000e-20 110.0
26 TraesCS2D01G546400 chr3B 85.811 148 14 4 5498 5639 170131303 170131157 3.690000e-32 150.0
27 TraesCS2D01G546400 chr5B 100.000 63 0 0 3705 3767 163905081 163905019 3.740000e-22 117.0
28 TraesCS2D01G546400 chr1A 97.015 67 2 0 3696 3762 440415489 440415555 4.840000e-21 113.0
29 TraesCS2D01G546400 chr1B 95.714 70 1 2 3705 3773 332086401 332086469 1.740000e-20 111.0
30 TraesCS2D01G546400 chr6B 95.588 68 3 0 3705 3772 325029681 325029614 6.260000e-20 110.0
31 TraesCS2D01G546400 chr6B 91.026 78 6 1 3704 3780 668512840 668512763 2.910000e-18 104.0
32 TraesCS2D01G546400 chr6B 95.833 48 2 0 5623 5670 384973079 384973126 1.770000e-10 78.7
33 TraesCS2D01G546400 chr3D 95.588 68 3 0 3705 3772 54638584 54638651 6.260000e-20 110.0
34 TraesCS2D01G546400 chr3A 90.123 81 7 1 3705 3784 739559981 739560061 2.910000e-18 104.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G546400 chr2D 622916869 622922778 5909 False 5280.000000 9542 100.000000 1 5910 2 chr2D.!!$F2 5909
1 TraesCS2D01G546400 chr2A 754352352 754357906 5554 False 999.866667 3465 90.495556 110 5878 9 chr2A.!!$F1 5768
2 TraesCS2D01G546400 chr2B 765062996 765069195 6199 False 615.345455 2037 90.066091 68 5878 11 chr2B.!!$F2 5810

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
901 935 0.044244 TTTTCCCCCTCCGATCTCCT 59.956 55.0 0.00 0.0 0.00 3.69 F
906 940 0.251165 CCCCTCCGATCTCCTCTCTC 60.251 65.0 0.00 0.0 0.00 3.20 F
1552 1891 0.321564 GTGCACAGGGCTATGACACA 60.322 55.0 13.17 0.0 45.15 3.72 F
3349 3769 0.106268 ATGTTCTGGGTGTGTGCCAA 60.106 50.0 0.00 0.0 0.00 4.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2803 3215 2.151502 TGACCCAAAACCTGCAAGAA 57.848 45.000 0.00 0.0 34.07 2.52 R
3072 3484 3.631250 TCTTTGGCAAAGATGGGGATAC 58.369 45.455 32.85 0.0 42.31 2.24 R
3356 3776 0.254462 TGAAGCACACACCCAGAACA 59.746 50.000 0.00 0.0 0.00 3.18 R
5198 5822 0.108615 CCTCTTTCGTCCGCATCAGT 60.109 55.000 0.00 0.0 0.00 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 9.752961 AGGTTTTAACATACCATGTAACAAAAC 57.247 29.630 17.69 17.69 44.07 2.43
27 28 9.752961 GGTTTTAACATACCATGTAACAAAACT 57.247 29.630 21.09 1.57 44.07 2.66
34 35 9.290988 ACATACCATGTAACAAAACTGATAACA 57.709 29.630 0.00 0.00 42.78 2.41
36 37 9.733556 ATACCATGTAACAAAACTGATAACAGA 57.266 29.630 7.05 0.00 46.03 3.41
37 38 7.871853 ACCATGTAACAAAACTGATAACAGAC 58.128 34.615 7.05 0.00 46.03 3.51
38 39 7.719633 ACCATGTAACAAAACTGATAACAGACT 59.280 33.333 7.05 0.00 46.03 3.24
39 40 8.230486 CCATGTAACAAAACTGATAACAGACTC 58.770 37.037 7.05 0.00 46.03 3.36
40 41 8.993121 CATGTAACAAAACTGATAACAGACTCT 58.007 33.333 7.05 0.00 46.03 3.24
41 42 8.958119 TGTAACAAAACTGATAACAGACTCTT 57.042 30.769 7.05 0.00 46.03 2.85
42 43 8.826710 TGTAACAAAACTGATAACAGACTCTTG 58.173 33.333 7.05 6.75 46.03 3.02
43 44 7.865706 AACAAAACTGATAACAGACTCTTGT 57.134 32.000 7.05 7.29 46.03 3.16
44 45 7.484035 ACAAAACTGATAACAGACTCTTGTC 57.516 36.000 7.05 0.00 46.03 3.18
59 60 7.462109 GACTCTTGTCTGCTACAATATCAAG 57.538 40.000 5.79 0.00 46.81 3.02
60 61 6.940739 ACTCTTGTCTGCTACAATATCAAGT 58.059 36.000 5.79 3.62 46.81 3.16
61 62 8.067751 ACTCTTGTCTGCTACAATATCAAGTA 57.932 34.615 5.79 0.00 46.81 2.24
62 63 7.976734 ACTCTTGTCTGCTACAATATCAAGTAC 59.023 37.037 5.79 0.00 46.81 2.73
63 64 8.067751 TCTTGTCTGCTACAATATCAAGTACT 57.932 34.615 5.79 0.00 46.81 2.73
64 65 8.531982 TCTTGTCTGCTACAATATCAAGTACTT 58.468 33.333 1.12 1.12 46.81 2.24
65 66 9.803315 CTTGTCTGCTACAATATCAAGTACTTA 57.197 33.333 8.04 0.00 46.81 2.24
66 67 9.582431 TTGTCTGCTACAATATCAAGTACTTAC 57.418 33.333 8.04 0.00 43.22 2.34
81 82 7.752239 TCAAGTACTTACGTAACTGCTATGAAC 59.248 37.037 8.04 0.00 0.00 3.18
82 83 7.149569 AGTACTTACGTAACTGCTATGAACA 57.850 36.000 3.29 0.00 0.00 3.18
92 93 6.882610 AACTGCTATGAACATCAAGTTTGA 57.117 33.333 0.00 0.00 41.51 2.69
94 95 6.906659 ACTGCTATGAACATCAAGTTTGAAG 58.093 36.000 0.00 0.00 41.51 3.02
95 96 6.488006 ACTGCTATGAACATCAAGTTTGAAGT 59.512 34.615 0.00 0.00 41.51 3.01
108 109 2.956333 GTTTGAAGTGCCTAAGGTGGTT 59.044 45.455 0.00 0.00 0.00 3.67
196 211 0.685785 TCACCCTGCTCTCTGCCTAG 60.686 60.000 0.00 0.00 42.00 3.02
200 215 0.468958 CCTGCTCTCTGCCTAGGCTA 60.469 60.000 33.07 20.37 42.00 3.93
201 216 0.961019 CTGCTCTCTGCCTAGGCTAG 59.039 60.000 33.07 27.60 42.00 3.42
211 226 0.107643 CCTAGGCTAGGCTTTCCTGC 59.892 60.000 26.79 3.32 44.08 4.85
212 227 0.833287 CTAGGCTAGGCTTTCCTGCA 59.167 55.000 25.37 3.12 44.08 4.41
213 228 0.833287 TAGGCTAGGCTTTCCTGCAG 59.167 55.000 25.37 6.78 44.08 4.41
214 229 2.117779 GGCTAGGCTTTCCTGCAGC 61.118 63.158 8.66 0.00 44.08 5.25
234 249 2.589014 CGCAGAAGAAAATGGCTCAAC 58.411 47.619 0.00 0.00 0.00 3.18
237 252 4.233005 GCAGAAGAAAATGGCTCAACTTC 58.767 43.478 0.00 0.00 35.47 3.01
238 253 4.470462 CAGAAGAAAATGGCTCAACTTCG 58.530 43.478 0.00 0.00 38.74 3.79
239 254 2.997485 AGAAAATGGCTCAACTTCGC 57.003 45.000 0.00 0.00 0.00 4.70
240 255 2.229792 AGAAAATGGCTCAACTTCGCA 58.770 42.857 0.00 0.00 0.00 5.10
241 256 2.227388 AGAAAATGGCTCAACTTCGCAG 59.773 45.455 0.00 0.00 0.00 5.18
242 257 0.242017 AAATGGCTCAACTTCGCAGC 59.758 50.000 0.00 0.00 0.00 5.25
243 258 0.890542 AATGGCTCAACTTCGCAGCA 60.891 50.000 0.00 0.00 34.62 4.41
244 259 1.303799 ATGGCTCAACTTCGCAGCAG 61.304 55.000 0.00 0.00 34.62 4.24
245 260 1.963338 GGCTCAACTTCGCAGCAGT 60.963 57.895 0.00 0.00 34.62 4.40
246 261 0.670546 GGCTCAACTTCGCAGCAGTA 60.671 55.000 0.00 0.00 34.62 2.74
247 262 0.440371 GCTCAACTTCGCAGCAGTAC 59.560 55.000 0.00 0.00 33.06 2.73
248 263 1.937108 GCTCAACTTCGCAGCAGTACT 60.937 52.381 0.00 0.00 33.06 2.73
249 264 2.671351 GCTCAACTTCGCAGCAGTACTA 60.671 50.000 0.00 0.00 33.06 1.82
250 265 2.917971 CTCAACTTCGCAGCAGTACTAC 59.082 50.000 0.00 0.00 0.00 2.73
252 267 1.254026 ACTTCGCAGCAGTACTACCA 58.746 50.000 0.00 0.00 0.00 3.25
253 268 1.825474 ACTTCGCAGCAGTACTACCAT 59.175 47.619 0.00 0.00 0.00 3.55
254 269 3.021695 ACTTCGCAGCAGTACTACCATA 58.978 45.455 0.00 0.00 0.00 2.74
256 271 2.927028 TCGCAGCAGTACTACCATAGA 58.073 47.619 0.00 0.00 0.00 1.98
268 284 3.987868 ACTACCATAGAATAATGCGCGTG 59.012 43.478 8.43 0.00 0.00 5.34
281 297 4.451150 GCGTGGCATCAGGACCGA 62.451 66.667 0.00 0.00 0.00 4.69
319 344 3.691118 TGCAGAAATCAGAAAGGAATCGG 59.309 43.478 0.00 0.00 0.00 4.18
345 370 4.737177 GCAGGCCAGGCAGAGCTT 62.737 66.667 15.19 0.00 0.00 3.74
363 388 1.815003 CTTGGGCTTCCTTACAGCAAG 59.185 52.381 0.00 0.00 39.21 4.01
367 392 1.279271 GGCTTCCTTACAGCAAGAGGA 59.721 52.381 0.00 0.00 39.21 3.71
371 396 3.176924 TCCTTACAGCAAGAGGACTCT 57.823 47.619 0.00 0.00 42.75 3.24
372 397 3.093057 TCCTTACAGCAAGAGGACTCTC 58.907 50.000 1.76 0.00 39.39 3.20
375 400 1.515952 CAGCAAGAGGACTCTCGCG 60.516 63.158 0.00 0.00 44.47 5.87
376 401 2.202676 GCAAGAGGACTCTCGCGG 60.203 66.667 6.13 0.00 44.47 6.46
402 427 1.228583 TATGGATCTCCGCTCCGCT 60.229 57.895 0.00 0.00 39.43 5.52
417 442 0.532573 CCGCTCTGCTCCACTAGAAA 59.467 55.000 0.00 0.00 0.00 2.52
492 517 2.637640 GGTGGGAGGAGGAGGAGGA 61.638 68.421 0.00 0.00 0.00 3.71
494 519 1.230650 TGGGAGGAGGAGGAGGAGA 60.231 63.158 0.00 0.00 0.00 3.71
499 524 1.074850 GGAGGAGGAGGAGAAGGGG 60.075 68.421 0.00 0.00 0.00 4.79
501 526 2.770475 GGAGGAGGAGAAGGGGGC 60.770 72.222 0.00 0.00 0.00 5.80
502 527 2.370633 GAGGAGGAGAAGGGGGCT 59.629 66.667 0.00 0.00 0.00 5.19
503 528 2.041928 AGGAGGAGAAGGGGGCTG 59.958 66.667 0.00 0.00 0.00 4.85
506 532 3.626596 AGGAGAAGGGGGCTGGGA 61.627 66.667 0.00 0.00 0.00 4.37
538 564 2.960129 GCGCGACCTAATCCCACG 60.960 66.667 12.10 0.00 0.00 4.94
765 791 4.275508 CCATGAGGCCGATGGGGG 62.276 72.222 23.04 7.69 37.33 5.40
779 805 4.176752 GGGGGACGTGATCTGGGC 62.177 72.222 0.00 0.00 0.00 5.36
781 807 3.458163 GGGACGTGATCTGGGCGA 61.458 66.667 0.00 0.00 0.00 5.54
784 810 0.462047 GGACGTGATCTGGGCGAAAT 60.462 55.000 0.00 0.00 0.00 2.17
794 820 1.143183 GGGCGAAATCGGTAGCAGA 59.857 57.895 4.84 0.00 40.23 4.26
797 823 0.528684 GCGAAATCGGTAGCAGAGCT 60.529 55.000 4.84 0.00 40.34 4.09
823 849 3.372795 GACCAGTCCAACAACGTCA 57.627 52.632 0.00 0.00 0.00 4.35
825 851 0.179056 ACCAGTCCAACAACGTCAGG 60.179 55.000 0.00 0.00 0.00 3.86
866 900 3.259123 GGCCAATATTTAAGCCCATGAGG 59.741 47.826 0.00 0.00 39.60 3.86
888 922 1.453928 CCCAGGCCGATCTTTTCCC 60.454 63.158 0.00 0.00 0.00 3.97
898 932 2.050918 GATCTTTTCCCCCTCCGATCT 58.949 52.381 0.00 0.00 0.00 2.75
900 934 0.470341 CTTTTCCCCCTCCGATCTCC 59.530 60.000 0.00 0.00 0.00 3.71
901 935 0.044244 TTTTCCCCCTCCGATCTCCT 59.956 55.000 0.00 0.00 0.00 3.69
902 936 0.398664 TTTCCCCCTCCGATCTCCTC 60.399 60.000 0.00 0.00 0.00 3.71
903 937 1.297409 TTCCCCCTCCGATCTCCTCT 61.297 60.000 0.00 0.00 0.00 3.69
904 938 1.228737 CCCCCTCCGATCTCCTCTC 60.229 68.421 0.00 0.00 0.00 3.20
905 939 1.725169 CCCCCTCCGATCTCCTCTCT 61.725 65.000 0.00 0.00 0.00 3.10
906 940 0.251165 CCCCTCCGATCTCCTCTCTC 60.251 65.000 0.00 0.00 0.00 3.20
925 1211 4.176851 GTCGTCTCCGGCGGACTC 62.177 72.222 27.46 19.00 33.95 3.36
970 1257 4.537433 GCAGCCGCCGATTCCTCT 62.537 66.667 0.00 0.00 0.00 3.69
971 1258 2.279784 CAGCCGCCGATTCCTCTC 60.280 66.667 0.00 0.00 0.00 3.20
972 1259 3.541713 AGCCGCCGATTCCTCTCC 61.542 66.667 0.00 0.00 0.00 3.71
974 1261 3.528370 CCGCCGATTCCTCTCCGT 61.528 66.667 0.00 0.00 0.00 4.69
976 1263 2.586357 GCCGATTCCTCTCCGTGC 60.586 66.667 0.00 0.00 0.00 5.34
977 1264 2.107141 CCGATTCCTCTCCGTGCC 59.893 66.667 0.00 0.00 0.00 5.01
978 1265 2.278857 CGATTCCTCTCCGTGCCG 60.279 66.667 0.00 0.00 0.00 5.69
1117 1406 3.491581 TCGCTTCCGACTTCTTGAC 57.508 52.632 0.00 0.00 38.82 3.18
1154 1443 1.377202 GGACTCAGGCCGCATTTGA 60.377 57.895 0.00 0.00 0.00 2.69
1296 1591 7.502120 TCTTCAGGTTTTCTTCAGATTCTTG 57.498 36.000 0.00 0.00 0.00 3.02
1297 1592 5.695851 TCAGGTTTTCTTCAGATTCTTGC 57.304 39.130 0.00 0.00 0.00 4.01
1300 1595 4.453819 AGGTTTTCTTCAGATTCTTGCTCG 59.546 41.667 0.00 0.00 0.00 5.03
1304 1599 4.103365 TCTTCAGATTCTTGCTCGTCTC 57.897 45.455 0.00 0.00 0.00 3.36
1451 1760 4.036567 TGTGCACTACATCGTGGTATAC 57.963 45.455 19.41 0.00 35.47 1.47
1500 1839 3.620488 TGCCAGTTAGGATTTCATGGTC 58.380 45.455 0.00 0.00 41.22 4.02
1502 1841 3.681594 GCCAGTTAGGATTTCATGGTCGA 60.682 47.826 0.00 0.00 41.22 4.20
1503 1842 3.871594 CCAGTTAGGATTTCATGGTCGAC 59.128 47.826 7.13 7.13 41.22 4.20
1504 1843 3.551890 CAGTTAGGATTTCATGGTCGACG 59.448 47.826 9.92 0.00 0.00 5.12
1505 1844 2.864343 GTTAGGATTTCATGGTCGACGG 59.136 50.000 9.92 1.63 0.00 4.79
1514 1853 2.657620 GGTCGACGGATTAGGCGC 60.658 66.667 9.92 0.00 43.47 6.53
1552 1891 0.321564 GTGCACAGGGCTATGACACA 60.322 55.000 13.17 0.00 45.15 3.72
1553 1892 0.321564 TGCACAGGGCTATGACACAC 60.322 55.000 0.00 0.00 45.15 3.82
1559 1898 1.276421 AGGGCTATGACACACTGTGAC 59.724 52.381 16.30 10.28 36.96 3.67
1560 1899 1.001974 GGGCTATGACACACTGTGACA 59.998 52.381 16.30 15.71 41.52 3.58
1687 2026 2.985847 GGGCCGGCAATATGGAGC 60.986 66.667 30.85 6.91 0.00 4.70
1728 2067 2.489329 CACGGGAAGAAACATCTGCATT 59.511 45.455 0.00 0.00 0.00 3.56
1834 2177 5.036117 AGATCCGTATGCCACTTTTATGT 57.964 39.130 0.00 0.00 0.00 2.29
1871 2214 6.880484 TGCTATTTGATGCAGGATTTTCATT 58.120 32.000 0.00 0.00 34.84 2.57
1932 2278 1.925415 TACAGCTTAACTCGCCGCGA 61.925 55.000 15.90 15.90 0.00 5.87
2567 2979 7.548780 TGGCATTAATAATTCTTTTGCAGGTTC 59.451 33.333 10.98 0.00 0.00 3.62
2584 2996 2.557452 GGTTCTGGGTGAAATGGATGGT 60.557 50.000 0.00 0.00 36.30 3.55
3072 3484 2.241176 TGGGGTGGCTTCTAGTAATTGG 59.759 50.000 0.00 0.00 0.00 3.16
3086 3498 7.745717 TCTAGTAATTGGTATCCCCATCTTTG 58.254 38.462 0.00 0.00 44.74 2.77
3146 3558 7.851822 AATCAGTATTTTTGTTACAAGTGCG 57.148 32.000 0.00 0.00 0.00 5.34
3147 3559 6.366315 TCAGTATTTTTGTTACAAGTGCGT 57.634 33.333 0.00 0.00 0.00 5.24
3261 3681 6.494893 TCTTATTCACACCTGAAATTTCCG 57.505 37.500 15.48 9.08 39.90 4.30
3316 3736 5.127194 CACTAGGTAGTAAGCTGATTGGTGA 59.873 44.000 0.00 0.00 34.13 4.02
3347 3767 0.250901 AGATGTTCTGGGTGTGTGCC 60.251 55.000 0.00 0.00 0.00 5.01
3349 3769 0.106268 ATGTTCTGGGTGTGTGCCAA 60.106 50.000 0.00 0.00 0.00 4.52
3350 3770 0.106268 TGTTCTGGGTGTGTGCCAAT 60.106 50.000 0.00 0.00 0.00 3.16
3351 3771 0.598065 GTTCTGGGTGTGTGCCAATC 59.402 55.000 0.00 0.00 0.00 2.67
3352 3772 0.478072 TTCTGGGTGTGTGCCAATCT 59.522 50.000 0.00 0.00 0.00 2.40
3353 3773 1.357137 TCTGGGTGTGTGCCAATCTA 58.643 50.000 0.00 0.00 0.00 1.98
3354 3774 1.278985 TCTGGGTGTGTGCCAATCTAG 59.721 52.381 0.00 0.00 0.00 2.43
3355 3775 1.278985 CTGGGTGTGTGCCAATCTAGA 59.721 52.381 0.00 0.00 0.00 2.43
3356 3776 1.915489 TGGGTGTGTGCCAATCTAGAT 59.085 47.619 0.00 0.00 0.00 1.98
3357 3777 2.292267 GGGTGTGTGCCAATCTAGATG 58.708 52.381 5.86 0.76 0.00 2.90
3358 3778 2.356125 GGGTGTGTGCCAATCTAGATGT 60.356 50.000 5.86 0.00 0.00 3.06
3359 3779 3.347216 GGTGTGTGCCAATCTAGATGTT 58.653 45.455 5.86 0.00 0.00 2.71
3360 3780 3.375299 GGTGTGTGCCAATCTAGATGTTC 59.625 47.826 5.86 0.00 0.00 3.18
3361 3781 4.256920 GTGTGTGCCAATCTAGATGTTCT 58.743 43.478 5.86 0.00 0.00 3.01
3362 3782 4.093998 GTGTGTGCCAATCTAGATGTTCTG 59.906 45.833 5.86 0.34 0.00 3.02
3363 3783 3.624861 GTGTGCCAATCTAGATGTTCTGG 59.375 47.826 14.50 14.50 0.00 3.86
3364 3784 3.209410 GTGCCAATCTAGATGTTCTGGG 58.791 50.000 18.64 10.00 0.00 4.45
3365 3785 2.846206 TGCCAATCTAGATGTTCTGGGT 59.154 45.455 18.64 0.00 0.00 4.51
3366 3786 3.209410 GCCAATCTAGATGTTCTGGGTG 58.791 50.000 18.64 6.57 0.00 4.61
3367 3787 3.370953 GCCAATCTAGATGTTCTGGGTGT 60.371 47.826 18.64 0.00 0.00 4.16
3368 3788 4.194640 CCAATCTAGATGTTCTGGGTGTG 58.805 47.826 5.86 0.00 0.00 3.82
3369 3789 4.323792 CCAATCTAGATGTTCTGGGTGTGT 60.324 45.833 5.86 0.00 0.00 3.72
3370 3790 3.961480 TCTAGATGTTCTGGGTGTGTG 57.039 47.619 0.00 0.00 0.00 3.82
3371 3791 2.028112 TCTAGATGTTCTGGGTGTGTGC 60.028 50.000 0.00 0.00 0.00 4.57
3431 3852 6.772716 ACACTCCTTTTGTAGAATCATTGTGT 59.227 34.615 0.00 0.00 0.00 3.72
3508 3929 5.523369 CCAAAATATAGGCTACTTTGCTGC 58.477 41.667 15.21 0.00 0.00 5.25
3530 3951 4.084537 GCTCTGCATGCATTTTTCATATGC 60.085 41.667 22.97 9.29 46.63 3.14
3576 3997 8.630917 TGGTAGATCTGTACTACTAAGAATTGC 58.369 37.037 5.18 0.00 39.77 3.56
3602 4023 5.048782 TGTGATAACCAGAAATGTTGCACTC 60.049 40.000 0.00 0.00 35.35 3.51
3612 4033 6.854892 CAGAAATGTTGCACTCTAGACTTTTG 59.145 38.462 3.40 0.00 0.00 2.44
3613 4034 6.543831 AGAAATGTTGCACTCTAGACTTTTGT 59.456 34.615 3.40 0.00 0.00 2.83
3621 4043 5.179555 GCACTCTAGACTTTTGTGGGTAAAG 59.820 44.000 10.16 0.00 38.32 1.85
3663 4085 2.822561 TGCTGGTTGTTGTGAAGACAAA 59.177 40.909 0.00 0.00 43.77 2.83
3681 4103 6.485171 AGACAAATTCTGGCAAGGTAATAGT 58.515 36.000 0.00 0.00 34.24 2.12
3682 4104 7.630082 AGACAAATTCTGGCAAGGTAATAGTA 58.370 34.615 0.00 0.00 34.24 1.82
3683 4105 7.770897 AGACAAATTCTGGCAAGGTAATAGTAG 59.229 37.037 0.00 0.00 34.24 2.57
3702 4124 6.980416 AGTAGATGTTTAGGTGATACTCCC 57.020 41.667 0.00 0.00 0.00 4.30
3703 4125 6.684538 AGTAGATGTTTAGGTGATACTCCCT 58.315 40.000 0.00 0.00 34.74 4.20
3704 4126 7.133483 AGTAGATGTTTAGGTGATACTCCCTT 58.867 38.462 0.00 0.00 32.08 3.95
3705 4127 6.487299 AGATGTTTAGGTGATACTCCCTTC 57.513 41.667 0.00 0.00 32.08 3.46
3706 4128 6.206042 AGATGTTTAGGTGATACTCCCTTCT 58.794 40.000 0.00 0.00 32.08 2.85
3707 4129 7.363031 AGATGTTTAGGTGATACTCCCTTCTA 58.637 38.462 0.00 0.00 32.08 2.10
3708 4130 7.507616 AGATGTTTAGGTGATACTCCCTTCTAG 59.492 40.741 0.00 0.00 32.08 2.43
3709 4131 6.738635 TGTTTAGGTGATACTCCCTTCTAGA 58.261 40.000 0.00 0.00 32.08 2.43
3710 4132 7.363031 TGTTTAGGTGATACTCCCTTCTAGAT 58.637 38.462 0.00 0.00 32.08 1.98
3711 4133 8.508601 TGTTTAGGTGATACTCCCTTCTAGATA 58.491 37.037 0.00 0.00 32.08 1.98
3712 4134 8.795513 GTTTAGGTGATACTCCCTTCTAGATAC 58.204 40.741 0.00 0.00 32.08 2.24
3713 4135 6.532119 AGGTGATACTCCCTTCTAGATACA 57.468 41.667 0.00 0.00 0.00 2.29
3714 4136 7.109901 AGGTGATACTCCCTTCTAGATACAT 57.890 40.000 0.00 0.00 0.00 2.29
3715 4137 7.179269 AGGTGATACTCCCTTCTAGATACATC 58.821 42.308 0.00 0.00 0.00 3.06
3716 4138 6.378848 GGTGATACTCCCTTCTAGATACATCC 59.621 46.154 0.00 0.00 0.00 3.51
3717 4139 6.378848 GTGATACTCCCTTCTAGATACATCCC 59.621 46.154 0.00 0.00 0.00 3.85
3718 4140 4.134933 ACTCCCTTCTAGATACATCCCC 57.865 50.000 0.00 0.00 0.00 4.81
3719 4141 3.735442 ACTCCCTTCTAGATACATCCCCT 59.265 47.826 0.00 0.00 0.00 4.79
3720 4142 4.173043 ACTCCCTTCTAGATACATCCCCTT 59.827 45.833 0.00 0.00 0.00 3.95
3721 4143 5.158889 CTCCCTTCTAGATACATCCCCTTT 58.841 45.833 0.00 0.00 0.00 3.11
3722 4144 5.548573 TCCCTTCTAGATACATCCCCTTTT 58.451 41.667 0.00 0.00 0.00 2.27
3723 4145 6.699688 TCCCTTCTAGATACATCCCCTTTTA 58.300 40.000 0.00 0.00 0.00 1.52
3724 4146 7.321530 TCCCTTCTAGATACATCCCCTTTTAT 58.678 38.462 0.00 0.00 0.00 1.40
3725 4147 7.458170 TCCCTTCTAGATACATCCCCTTTTATC 59.542 40.741 0.00 0.00 0.00 1.75
3726 4148 7.311360 CCCTTCTAGATACATCCCCTTTTATCC 60.311 44.444 0.00 0.00 0.00 2.59
3727 4149 7.237679 CCTTCTAGATACATCCCCTTTTATCCA 59.762 40.741 0.00 0.00 0.00 3.41
3728 4150 8.757307 TTCTAGATACATCCCCTTTTATCCAT 57.243 34.615 0.00 0.00 0.00 3.41
3729 4151 8.757307 TCTAGATACATCCCCTTTTATCCATT 57.243 34.615 0.00 0.00 0.00 3.16
3730 4152 9.182642 TCTAGATACATCCCCTTTTATCCATTT 57.817 33.333 0.00 0.00 0.00 2.32
3731 4153 9.813826 CTAGATACATCCCCTTTTATCCATTTT 57.186 33.333 0.00 0.00 0.00 1.82
3732 4154 8.482852 AGATACATCCCCTTTTATCCATTTTG 57.517 34.615 0.00 0.00 0.00 2.44
3733 4155 8.288812 AGATACATCCCCTTTTATCCATTTTGA 58.711 33.333 0.00 0.00 0.00 2.69
3734 4156 9.093458 GATACATCCCCTTTTATCCATTTTGAT 57.907 33.333 0.00 0.00 0.00 2.57
3735 4157 7.128234 ACATCCCCTTTTATCCATTTTGATG 57.872 36.000 0.00 0.00 33.80 3.07
3736 4158 6.902416 ACATCCCCTTTTATCCATTTTGATGA 59.098 34.615 0.00 0.00 32.39 2.92
3737 4159 6.790232 TCCCCTTTTATCCATTTTGATGAC 57.210 37.500 0.00 0.00 0.00 3.06
3738 4160 6.259893 TCCCCTTTTATCCATTTTGATGACA 58.740 36.000 0.00 0.00 0.00 3.58
3739 4161 6.728164 TCCCCTTTTATCCATTTTGATGACAA 59.272 34.615 0.00 0.00 0.00 3.18
3740 4162 7.043565 CCCCTTTTATCCATTTTGATGACAAG 58.956 38.462 0.00 0.00 37.32 3.16
3741 4163 7.310609 CCCCTTTTATCCATTTTGATGACAAGT 60.311 37.037 0.00 0.00 37.32 3.16
3742 4164 8.748412 CCCTTTTATCCATTTTGATGACAAGTA 58.252 33.333 0.00 0.00 37.32 2.24
3748 4170 6.851609 TCCATTTTGATGACAAGTATTTCCG 58.148 36.000 0.00 0.00 37.32 4.30
3749 4171 6.035843 CCATTTTGATGACAAGTATTTCCGG 58.964 40.000 0.00 0.00 37.32 5.14
3750 4172 6.127758 CCATTTTGATGACAAGTATTTCCGGA 60.128 38.462 0.00 0.00 37.32 5.14
3751 4173 5.873179 TTTGATGACAAGTATTTCCGGAC 57.127 39.130 1.83 0.00 37.32 4.79
3752 4174 3.517602 TGATGACAAGTATTTCCGGACG 58.482 45.455 1.83 0.00 0.00 4.79
3753 4175 2.373540 TGACAAGTATTTCCGGACGG 57.626 50.000 1.83 3.96 0.00 4.79
3754 4176 1.894466 TGACAAGTATTTCCGGACGGA 59.106 47.619 1.83 9.76 43.52 4.69
3755 4177 2.094390 TGACAAGTATTTCCGGACGGAG 60.094 50.000 13.64 3.15 46.06 4.63
3756 4178 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
3757 4179 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
3758 4180 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
3759 4181 0.388294 GTATTTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
3760 4182 0.032813 TATTTCCGGACGGAGGGAGT 60.033 55.000 13.64 0.00 46.06 3.85
3761 4183 0.032813 ATTTCCGGACGGAGGGAGTA 60.033 55.000 13.64 0.00 46.06 2.59
3762 4184 0.032813 TTTCCGGACGGAGGGAGTAT 60.033 55.000 13.64 0.00 46.06 2.12
3763 4185 0.466922 TTCCGGACGGAGGGAGTATC 60.467 60.000 13.64 0.00 46.06 2.24
3764 4186 1.150992 CCGGACGGAGGGAGTATCT 59.849 63.158 4.40 0.00 37.50 1.98
3765 4187 1.173444 CCGGACGGAGGGAGTATCTG 61.173 65.000 4.40 0.00 37.50 2.90
3766 4188 0.179026 CGGACGGAGGGAGTATCTGA 60.179 60.000 0.00 0.00 33.73 3.27
3767 4189 1.611519 GGACGGAGGGAGTATCTGAG 58.388 60.000 0.00 0.00 33.73 3.35
3768 4190 1.143277 GGACGGAGGGAGTATCTGAGA 59.857 57.143 0.00 0.00 33.73 3.27
3772 4194 2.604139 GGAGGGAGTATCTGAGAAGGG 58.396 57.143 0.00 0.00 33.73 3.95
3780 4208 5.378332 GAGTATCTGAGAAGGGCTGTAGTA 58.622 45.833 0.00 0.00 0.00 1.82
3795 4223 7.379750 GGGCTGTAGTATAGACCTTGAATAAG 58.620 42.308 11.50 0.00 40.38 1.73
3816 4244 4.214437 AGTACTTACGAAAGTGAACGTCG 58.786 43.478 0.00 7.69 45.63 5.12
3838 4268 6.807230 GTCGACACTTTTAGCTTCTATCTGAA 59.193 38.462 11.55 0.00 0.00 3.02
3937 4367 5.293569 GGGTCTGATTAACCGTCAGTAAATG 59.706 44.000 4.84 0.00 42.82 2.32
4083 4514 6.415573 ACTAATTCAGGAACAGTTGGATACC 58.584 40.000 0.00 0.00 0.00 2.73
4188 4619 0.947660 GAACGAGGACCCAACGGTTC 60.948 60.000 0.00 2.75 44.88 3.62
4295 4729 6.343703 CATGTGGACATCTCTTGACTAATGA 58.656 40.000 0.00 0.00 33.61 2.57
4304 4738 5.371526 TCTCTTGACTAATGATCCCAATGC 58.628 41.667 0.00 0.00 0.00 3.56
4306 4740 5.128205 TCTTGACTAATGATCCCAATGCTG 58.872 41.667 0.00 0.00 0.00 4.41
4329 4766 2.189594 TGCCTCACATTCTTCCACTG 57.810 50.000 0.00 0.00 0.00 3.66
4332 4769 2.430465 CCTCACATTCTTCCACTGTGG 58.570 52.381 20.86 20.86 40.47 4.17
4334 4771 2.810274 CTCACATTCTTCCACTGTGGTG 59.190 50.000 25.15 17.83 40.47 4.17
4350 4791 8.562892 CCACTGTGGTGAATAATAATGAGAATC 58.437 37.037 18.76 0.00 45.61 2.52
4367 4812 3.897505 AGAATCACCCCCTTGTTCTTTTG 59.102 43.478 0.00 0.00 0.00 2.44
4381 4826 6.445357 TGTTCTTTTGTACAGGAAAACTCC 57.555 37.500 0.00 0.00 0.00 3.85
4402 4847 1.322442 AAACCAAGGAGTGCTCTTGC 58.678 50.000 0.00 0.00 40.00 4.01
4479 4924 6.724441 TCAAGAGAACCTCCAAAGTATGACTA 59.276 38.462 0.00 0.00 0.00 2.59
4486 4944 6.257586 ACCTCCAAAGTATGACTACTCTCTT 58.742 40.000 0.00 0.00 37.20 2.85
4487 4945 7.411808 ACCTCCAAAGTATGACTACTCTCTTA 58.588 38.462 0.00 0.00 37.20 2.10
4514 4972 6.265649 AGTCTTCTAACTAGTTGTGAGCTTCA 59.734 38.462 18.56 1.06 0.00 3.02
4518 4976 9.424319 CTTCTAACTAGTTGTGAGCTTCATTTA 57.576 33.333 18.56 0.00 0.00 1.40
4537 4995 7.622713 TCATTTATGTTTCTTCCATGGCAAAT 58.377 30.769 6.96 0.00 0.00 2.32
4542 5026 6.602410 TGTTTCTTCCATGGCAAATATTCA 57.398 33.333 6.96 0.00 0.00 2.57
4543 5027 6.632909 TGTTTCTTCCATGGCAAATATTCAG 58.367 36.000 6.96 0.00 0.00 3.02
4558 5042 8.975439 GCAAATATTCAGCTGATAATTTCTTGG 58.025 33.333 23.72 17.13 0.00 3.61
4594 5081 3.650950 AGGGTCCTTGCATGCCGT 61.651 61.111 16.68 0.00 0.00 5.68
4605 5092 1.208358 CATGCCGTGTGTCTGCTTG 59.792 57.895 0.00 0.00 0.00 4.01
4607 5094 1.230635 ATGCCGTGTGTCTGCTTGTC 61.231 55.000 0.00 0.00 0.00 3.18
4610 5097 0.317160 CCGTGTGTCTGCTTGTCCTA 59.683 55.000 0.00 0.00 0.00 2.94
4613 5100 1.734465 GTGTGTCTGCTTGTCCTATGC 59.266 52.381 0.00 0.00 0.00 3.14
4614 5101 1.625315 TGTGTCTGCTTGTCCTATGCT 59.375 47.619 0.00 0.00 0.00 3.79
4615 5102 2.038952 TGTGTCTGCTTGTCCTATGCTT 59.961 45.455 0.00 0.00 0.00 3.91
4618 5105 2.675348 GTCTGCTTGTCCTATGCTTGTC 59.325 50.000 0.00 0.00 0.00 3.18
4629 5116 5.047021 GTCCTATGCTTGTCCTATGCTGATA 60.047 44.000 0.00 0.00 0.00 2.15
4632 5119 6.883217 CCTATGCTTGTCCTATGCTGATAATT 59.117 38.462 0.00 0.00 0.00 1.40
4633 5120 7.392673 CCTATGCTTGTCCTATGCTGATAATTT 59.607 37.037 0.00 0.00 0.00 1.82
4635 5122 7.496529 TGCTTGTCCTATGCTGATAATTTAC 57.503 36.000 0.00 0.00 0.00 2.01
4655 5216 4.689612 ACCTGTCAAGCACTCTTTAGAA 57.310 40.909 0.00 0.00 0.00 2.10
4690 5251 8.902806 CATGGTTACCATCAGTTACACATTTAT 58.097 33.333 14.80 0.00 43.15 1.40
4692 5253 7.148154 TGGTTACCATCAGTTACACATTTATGC 60.148 37.037 0.00 0.00 29.33 3.14
4770 5331 1.135689 CCTATGTTTGCTTGACGCCAC 60.136 52.381 0.00 0.00 38.05 5.01
4814 5375 1.633945 GTAAGGGCCAGAAAGGGAAGA 59.366 52.381 6.18 0.00 38.09 2.87
4925 5486 4.568359 GCATATGAACACTCGTCAATGTCT 59.432 41.667 6.97 0.00 0.00 3.41
4926 5487 5.501413 GCATATGAACACTCGTCAATGTCTG 60.501 44.000 6.97 0.00 0.00 3.51
4940 5513 5.940470 GTCAATGTCTGGAGTCATAGGTTTT 59.060 40.000 0.00 0.00 0.00 2.43
4951 5524 5.189180 AGTCATAGGTTTTGAAGAGATGCC 58.811 41.667 0.00 0.00 0.00 4.40
4956 5529 2.887152 GGTTTTGAAGAGATGCCTGTGT 59.113 45.455 0.00 0.00 0.00 3.72
4958 5531 4.202151 GGTTTTGAAGAGATGCCTGTGTTT 60.202 41.667 0.00 0.00 0.00 2.83
4970 5543 0.390124 CTGTGTTTGCCTTGCCATGT 59.610 50.000 0.00 0.00 0.00 3.21
4974 5547 0.037975 GTTTGCCTTGCCATGTCTGG 60.038 55.000 0.00 0.00 46.17 3.86
4977 5550 1.001641 GCCTTGCCATGTCTGGAGT 60.002 57.895 0.00 0.00 46.37 3.85
4978 5551 1.028868 GCCTTGCCATGTCTGGAGTC 61.029 60.000 0.00 0.00 46.37 3.36
4979 5552 0.325933 CCTTGCCATGTCTGGAGTCA 59.674 55.000 0.00 0.00 46.37 3.41
5028 5640 3.441572 GCCATTGCTGACTGATAGTTTGT 59.558 43.478 0.00 0.00 33.53 2.83
5031 5643 5.392380 CCATTGCTGACTGATAGTTTGTTCC 60.392 44.000 0.00 0.00 0.00 3.62
5041 5653 6.126863 TGATAGTTTGTTCCTGTGATCCTT 57.873 37.500 0.00 0.00 0.00 3.36
5048 5660 3.054875 TGTTCCTGTGATCCTTGATCCTG 60.055 47.826 1.88 0.00 38.20 3.86
5131 5748 7.869016 ACATTATATACGACACTGATTTCCG 57.131 36.000 0.00 0.00 0.00 4.30
5176 5800 5.582550 TCAGTGAGTATCGTCATTGTGATC 58.417 41.667 0.00 0.00 38.61 2.92
5197 5821 7.455891 TGATCCAGTTGTGATCAATGCTATAT 58.544 34.615 0.00 0.00 44.12 0.86
5198 5822 8.596293 TGATCCAGTTGTGATCAATGCTATATA 58.404 33.333 0.00 0.00 44.12 0.86
5244 5868 9.277783 CATAAATAGTCCTTTGATCTTCGGAAT 57.722 33.333 0.00 0.00 0.00 3.01
5266 5890 1.745653 GTTGCTCTAATCCCAAGCACC 59.254 52.381 0.00 0.00 45.15 5.01
5296 5925 7.673776 GCACAAACAGTAAATTCCACACAAAAG 60.674 37.037 0.00 0.00 0.00 2.27
5315 5944 9.377312 CACAAAAGAAAGGGTCAAAGATAAAAA 57.623 29.630 0.00 0.00 0.00 1.94
5394 6057 4.815846 TGAACATATGTTGATGTCCATCCG 59.184 41.667 25.42 0.00 39.16 4.18
5469 6374 9.824534 GTTGGAAATTATTGCATTTTGTTAAGG 57.175 29.630 0.00 0.00 36.71 2.69
5471 6376 8.997323 TGGAAATTATTGCATTTTGTTAAGGTG 58.003 29.630 0.00 0.00 31.30 4.00
5479 6384 8.586570 TTGCATTTTGTTAAGGTGTATTTGAG 57.413 30.769 0.00 0.00 0.00 3.02
5480 6385 6.644592 TGCATTTTGTTAAGGTGTATTTGAGC 59.355 34.615 0.00 0.00 0.00 4.26
5485 6390 6.554334 TGTTAAGGTGTATTTGAGCTTGAC 57.446 37.500 0.00 0.00 37.72 3.18
5515 6487 2.293399 ACTTCGTGGCAAACTTCCATTC 59.707 45.455 0.00 0.00 35.81 2.67
5516 6488 0.871722 TCGTGGCAAACTTCCATTCG 59.128 50.000 0.00 0.00 35.81 3.34
5519 6491 0.881118 TGGCAAACTTCCATTCGCTC 59.119 50.000 0.00 0.00 0.00 5.03
5520 6492 0.171231 GGCAAACTTCCATTCGCTCC 59.829 55.000 0.00 0.00 0.00 4.70
5521 6493 0.881118 GCAAACTTCCATTCGCTCCA 59.119 50.000 0.00 0.00 0.00 3.86
5523 6495 2.288152 GCAAACTTCCATTCGCTCCAAA 60.288 45.455 0.00 0.00 0.00 3.28
5526 6498 5.708948 CAAACTTCCATTCGCTCCAAATTA 58.291 37.500 0.00 0.00 0.00 1.40
5527 6499 5.567138 AACTTCCATTCGCTCCAAATTAG 57.433 39.130 0.00 0.00 0.00 1.73
5528 6500 3.378427 ACTTCCATTCGCTCCAAATTAGC 59.622 43.478 0.00 0.00 36.60 3.09
5529 6501 2.997980 TCCATTCGCTCCAAATTAGCA 58.002 42.857 0.00 0.00 40.08 3.49
5530 6502 3.554934 TCCATTCGCTCCAAATTAGCAT 58.445 40.909 0.00 0.00 40.08 3.79
5531 6503 3.565482 TCCATTCGCTCCAAATTAGCATC 59.435 43.478 0.00 0.00 40.08 3.91
5533 6505 4.534168 CATTCGCTCCAAATTAGCATCAG 58.466 43.478 0.00 0.00 40.08 2.90
5582 6556 3.625897 CCACCAGAGGACCACGCA 61.626 66.667 0.00 0.00 0.00 5.24
5589 6563 2.029844 GAGGACCACGCAGCTTGAC 61.030 63.158 0.00 0.00 0.00 3.18
5610 6584 5.697178 TGACCAAAATTTGCATCATCAAGTG 59.303 36.000 0.00 0.00 0.00 3.16
5611 6585 4.453136 ACCAAAATTTGCATCATCAAGTGC 59.547 37.500 0.00 0.00 41.61 4.40
5618 6595 5.710513 TTGCATCATCAAGTGCTTTTACT 57.289 34.783 0.00 0.00 41.78 2.24
5659 6636 8.826710 TCTGGAGTAAAAATATTTGCATCTACG 58.173 33.333 0.39 0.00 34.02 3.51
5677 6654 8.642885 GCATCTACGTCATCTATTGAAGTATTG 58.357 37.037 0.00 5.26 44.67 1.90
5732 6709 1.338337 AGTGATCCCGAGCTATTCACG 59.662 52.381 0.00 0.00 41.15 4.35
5739 6716 2.389059 CCGAGCTATTCACGTCATCTG 58.611 52.381 0.00 0.00 0.00 2.90
5787 6784 0.321298 GCTCGGTTGCTCCTGGTTAA 60.321 55.000 0.00 0.00 0.00 2.01
5790 6787 3.081804 CTCGGTTGCTCCTGGTTAAATT 58.918 45.455 0.00 0.00 0.00 1.82
5878 6946 0.815095 TCGTCGTGTGGTGCATCTAT 59.185 50.000 0.00 0.00 0.00 1.98
5879 6947 1.200483 CGTCGTGTGGTGCATCTATC 58.800 55.000 0.00 0.00 0.00 2.08
5880 6948 1.202302 CGTCGTGTGGTGCATCTATCT 60.202 52.381 0.00 0.00 0.00 1.98
5881 6949 2.196749 GTCGTGTGGTGCATCTATCTG 58.803 52.381 0.00 0.00 0.00 2.90
5882 6950 1.824852 TCGTGTGGTGCATCTATCTGT 59.175 47.619 0.00 0.00 0.00 3.41
5883 6951 2.159240 TCGTGTGGTGCATCTATCTGTC 60.159 50.000 0.00 0.00 0.00 3.51
5884 6952 2.196749 GTGTGGTGCATCTATCTGTCG 58.803 52.381 0.00 0.00 0.00 4.35
5885 6953 1.136891 TGTGGTGCATCTATCTGTCGG 59.863 52.381 0.00 0.00 0.00 4.79
5886 6954 0.752658 TGGTGCATCTATCTGTCGGG 59.247 55.000 0.00 0.00 0.00 5.14
5887 6955 0.753262 GGTGCATCTATCTGTCGGGT 59.247 55.000 0.00 0.00 0.00 5.28
5888 6956 1.139058 GGTGCATCTATCTGTCGGGTT 59.861 52.381 0.00 0.00 0.00 4.11
5889 6957 2.420129 GGTGCATCTATCTGTCGGGTTT 60.420 50.000 0.00 0.00 0.00 3.27
5890 6958 3.270877 GTGCATCTATCTGTCGGGTTTT 58.729 45.455 0.00 0.00 0.00 2.43
5891 6959 3.309954 GTGCATCTATCTGTCGGGTTTTC 59.690 47.826 0.00 0.00 0.00 2.29
5892 6960 3.055458 TGCATCTATCTGTCGGGTTTTCA 60.055 43.478 0.00 0.00 0.00 2.69
5893 6961 3.938963 GCATCTATCTGTCGGGTTTTCAA 59.061 43.478 0.00 0.00 0.00 2.69
5894 6962 4.034510 GCATCTATCTGTCGGGTTTTCAAG 59.965 45.833 0.00 0.00 0.00 3.02
5895 6963 4.884668 TCTATCTGTCGGGTTTTCAAGT 57.115 40.909 0.00 0.00 0.00 3.16
5896 6964 4.817517 TCTATCTGTCGGGTTTTCAAGTC 58.182 43.478 0.00 0.00 0.00 3.01
5897 6965 1.860676 TCTGTCGGGTTTTCAAGTCG 58.139 50.000 0.00 0.00 0.00 4.18
5898 6966 0.234884 CTGTCGGGTTTTCAAGTCGC 59.765 55.000 0.00 0.00 0.00 5.19
5899 6967 0.179067 TGTCGGGTTTTCAAGTCGCT 60.179 50.000 0.00 0.00 0.00 4.93
5900 6968 0.234884 GTCGGGTTTTCAAGTCGCTG 59.765 55.000 0.00 0.00 0.00 5.18
5901 6969 0.105224 TCGGGTTTTCAAGTCGCTGA 59.895 50.000 0.00 0.00 0.00 4.26
5902 6970 0.941542 CGGGTTTTCAAGTCGCTGAA 59.058 50.000 0.00 0.00 33.48 3.02
5903 6971 1.332375 CGGGTTTTCAAGTCGCTGAAA 59.668 47.619 3.85 3.85 42.21 2.69
5904 6972 2.727777 GGGTTTTCAAGTCGCTGAAAC 58.272 47.619 6.64 6.16 43.29 2.78
5905 6973 2.098443 GGGTTTTCAAGTCGCTGAAACA 59.902 45.455 6.64 0.00 43.29 2.83
5906 6974 3.243401 GGGTTTTCAAGTCGCTGAAACAT 60.243 43.478 6.64 0.00 43.29 2.71
5907 6975 4.023536 GGGTTTTCAAGTCGCTGAAACATA 60.024 41.667 6.64 0.00 43.29 2.29
5908 6976 4.909880 GGTTTTCAAGTCGCTGAAACATAC 59.090 41.667 6.64 4.08 43.29 2.39
5909 6977 5.277828 GGTTTTCAAGTCGCTGAAACATACT 60.278 40.000 6.64 0.00 43.29 2.12
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 9.752961 GTTTTGTTACATGGTATGTTAAAACCT 57.247 29.630 18.47 0.00 41.63 3.50
1 2 9.752961 AGTTTTGTTACATGGTATGTTAAAACC 57.247 29.630 21.61 4.66 42.79 3.27
8 9 9.290988 TGTTATCAGTTTTGTTACATGGTATGT 57.709 29.630 0.00 0.00 46.92 2.29
9 10 9.773328 CTGTTATCAGTTTTGTTACATGGTATG 57.227 33.333 0.00 0.00 36.97 2.39
10 11 9.733556 TCTGTTATCAGTTTTGTTACATGGTAT 57.266 29.630 0.00 0.00 41.91 2.73
11 12 8.995220 GTCTGTTATCAGTTTTGTTACATGGTA 58.005 33.333 0.00 0.00 41.91 3.25
12 13 7.719633 AGTCTGTTATCAGTTTTGTTACATGGT 59.280 33.333 0.00 0.00 41.91 3.55
13 14 8.099364 AGTCTGTTATCAGTTTTGTTACATGG 57.901 34.615 0.00 0.00 41.91 3.66
14 15 8.993121 AGAGTCTGTTATCAGTTTTGTTACATG 58.007 33.333 0.00 0.00 41.91 3.21
15 16 9.561069 AAGAGTCTGTTATCAGTTTTGTTACAT 57.439 29.630 0.00 0.00 41.91 2.29
16 17 8.826710 CAAGAGTCTGTTATCAGTTTTGTTACA 58.173 33.333 0.00 0.00 41.91 2.41
17 18 8.827677 ACAAGAGTCTGTTATCAGTTTTGTTAC 58.172 33.333 0.00 0.00 41.91 2.50
18 19 8.958119 ACAAGAGTCTGTTATCAGTTTTGTTA 57.042 30.769 0.00 0.00 41.91 2.41
19 20 7.865706 ACAAGAGTCTGTTATCAGTTTTGTT 57.134 32.000 0.00 0.00 41.91 2.83
20 21 7.484035 GACAAGAGTCTGTTATCAGTTTTGT 57.516 36.000 0.00 7.39 41.64 2.83
41 42 7.913821 CGTAAGTACTTGATATTGTAGCAGACA 59.086 37.037 18.56 0.00 35.78 3.41
42 43 8.271231 CGTAAGTACTTGATATTGTAGCAGAC 57.729 38.462 18.56 2.16 0.00 3.51
63 64 7.094631 ACTTGATGTTCATAGCAGTTACGTAA 58.905 34.615 3.29 3.29 0.00 3.18
64 65 6.627243 ACTTGATGTTCATAGCAGTTACGTA 58.373 36.000 0.00 0.00 0.00 3.57
65 66 5.479306 ACTTGATGTTCATAGCAGTTACGT 58.521 37.500 0.00 0.00 0.00 3.57
66 67 6.408858 AACTTGATGTTCATAGCAGTTACG 57.591 37.500 0.00 0.00 32.63 3.18
77 78 3.953612 AGGCACTTCAAACTTGATGTTCA 59.046 39.130 7.94 0.00 41.76 3.18
81 82 4.520492 ACCTTAGGCACTTCAAACTTGATG 59.480 41.667 0.00 4.31 41.75 3.07
82 83 4.520492 CACCTTAGGCACTTCAAACTTGAT 59.480 41.667 0.00 0.00 41.75 2.57
92 93 2.441750 TCTTGAACCACCTTAGGCACTT 59.558 45.455 0.00 0.00 41.75 3.16
94 95 2.152016 GTCTTGAACCACCTTAGGCAC 58.848 52.381 0.00 0.00 0.00 5.01
95 96 2.054799 AGTCTTGAACCACCTTAGGCA 58.945 47.619 0.00 0.00 0.00 4.75
135 142 1.069513 CAAGTGTTCGTCAGGTACCCA 59.930 52.381 8.74 0.00 0.00 4.51
196 211 2.117779 GCTGCAGGAAAGCCTAGCC 61.118 63.158 17.12 0.00 44.80 3.93
209 224 0.241749 CCATTTTCTTCTGCGCTGCA 59.758 50.000 9.73 0.00 36.92 4.41
210 225 1.074872 GCCATTTTCTTCTGCGCTGC 61.075 55.000 9.73 0.00 0.00 5.25
211 226 0.524862 AGCCATTTTCTTCTGCGCTG 59.475 50.000 9.73 8.88 0.00 5.18
212 227 0.807496 GAGCCATTTTCTTCTGCGCT 59.193 50.000 9.73 0.00 0.00 5.92
213 228 0.523072 TGAGCCATTTTCTTCTGCGC 59.477 50.000 0.00 0.00 0.00 6.09
214 229 2.227388 AGTTGAGCCATTTTCTTCTGCG 59.773 45.455 0.00 0.00 0.00 5.18
234 249 2.586258 ATGGTAGTACTGCTGCGAAG 57.414 50.000 10.95 0.00 0.00 3.79
237 252 3.710326 TTCTATGGTAGTACTGCTGCG 57.290 47.619 10.95 0.00 0.00 5.18
238 253 6.091441 GCATTATTCTATGGTAGTACTGCTGC 59.909 42.308 10.95 5.03 0.00 5.25
239 254 6.309009 CGCATTATTCTATGGTAGTACTGCTG 59.691 42.308 10.95 0.00 0.00 4.41
240 255 6.390721 CGCATTATTCTATGGTAGTACTGCT 58.609 40.000 10.95 0.00 0.00 4.24
241 256 5.062308 GCGCATTATTCTATGGTAGTACTGC 59.938 44.000 5.39 3.50 0.00 4.40
242 257 5.286320 CGCGCATTATTCTATGGTAGTACTG 59.714 44.000 8.75 0.00 0.00 2.74
243 258 5.048224 ACGCGCATTATTCTATGGTAGTACT 60.048 40.000 5.73 0.00 0.00 2.73
244 259 5.060569 CACGCGCATTATTCTATGGTAGTAC 59.939 44.000 5.73 0.00 0.00 2.73
245 260 5.158494 CACGCGCATTATTCTATGGTAGTA 58.842 41.667 5.73 0.00 0.00 1.82
246 261 3.987868 CACGCGCATTATTCTATGGTAGT 59.012 43.478 5.73 0.00 0.00 2.73
247 262 3.367932 CCACGCGCATTATTCTATGGTAG 59.632 47.826 5.73 0.00 0.00 3.18
248 263 3.322369 CCACGCGCATTATTCTATGGTA 58.678 45.455 5.73 0.00 0.00 3.25
249 264 2.143122 CCACGCGCATTATTCTATGGT 58.857 47.619 5.73 0.00 0.00 3.55
250 265 1.135972 GCCACGCGCATTATTCTATGG 60.136 52.381 5.73 2.88 37.47 2.74
252 267 1.877637 TGCCACGCGCATTATTCTAT 58.122 45.000 5.73 0.00 44.64 1.98
253 268 3.371087 TGCCACGCGCATTATTCTA 57.629 47.368 5.73 0.00 44.64 2.10
254 269 4.217035 TGCCACGCGCATTATTCT 57.783 50.000 5.73 0.00 44.64 2.40
268 284 0.815615 GTTCCATCGGTCCTGATGCC 60.816 60.000 14.60 5.13 43.52 4.40
277 293 2.128771 CCAGATTTGGTTCCATCGGT 57.871 50.000 0.00 0.00 39.79 4.69
297 313 3.691118 CCGATTCCTTTCTGATTTCTGCA 59.309 43.478 0.00 0.00 0.00 4.41
300 316 4.631813 CGTTCCGATTCCTTTCTGATTTCT 59.368 41.667 0.00 0.00 0.00 2.52
319 344 2.328099 CCTGGCCTGCTGTTCGTTC 61.328 63.158 3.32 0.00 0.00 3.95
375 400 1.289380 GAGATCCATACGTCCGGCC 59.711 63.158 0.00 0.00 0.00 6.13
376 401 1.289380 GGAGATCCATACGTCCGGC 59.711 63.158 0.00 0.00 35.64 6.13
411 436 1.403687 CCTCCCCCGCTCCTTTCTAG 61.404 65.000 0.00 0.00 0.00 2.43
492 517 0.553612 AGAAATCCCAGCCCCCTTCT 60.554 55.000 0.00 0.00 0.00 2.85
494 519 1.699752 CAGAAATCCCAGCCCCCTT 59.300 57.895 0.00 0.00 0.00 3.95
499 524 2.830370 CGGGCAGAAATCCCAGCC 60.830 66.667 0.00 0.00 44.11 4.85
501 526 3.204827 CGCGGGCAGAAATCCCAG 61.205 66.667 0.00 0.00 44.11 4.45
519 545 4.215742 TGGGATTAGGTCGCGCGG 62.216 66.667 31.69 11.75 42.37 6.46
748 774 4.275508 CCCCCATCGGCCTCATGG 62.276 72.222 19.51 19.51 40.67 3.66
762 788 4.176752 GCCCAGATCACGTCCCCC 62.177 72.222 0.00 0.00 0.00 5.40
763 789 4.530857 CGCCCAGATCACGTCCCC 62.531 72.222 0.00 0.00 0.00 4.81
764 790 2.515996 TTTCGCCCAGATCACGTCCC 62.516 60.000 0.00 0.00 0.00 4.46
765 791 0.462047 ATTTCGCCCAGATCACGTCC 60.462 55.000 0.00 0.00 0.00 4.79
769 795 0.462047 ACCGATTTCGCCCAGATCAC 60.462 55.000 0.00 0.00 38.18 3.06
779 805 1.482278 GAGCTCTGCTACCGATTTCG 58.518 55.000 6.43 0.00 39.88 3.46
781 807 0.103208 CCGAGCTCTGCTACCGATTT 59.897 55.000 12.85 0.00 39.88 2.17
784 810 3.518998 GCCGAGCTCTGCTACCGA 61.519 66.667 21.45 0.00 39.88 4.69
806 832 0.179056 CCTGACGTTGTTGGACTGGT 60.179 55.000 0.00 0.00 0.00 4.00
811 837 0.736053 GTTTGCCTGACGTTGTTGGA 59.264 50.000 0.00 0.00 0.00 3.53
818 844 1.157870 CCGAAGTGTTTGCCTGACGT 61.158 55.000 0.00 0.00 0.00 4.34
819 845 1.569493 CCGAAGTGTTTGCCTGACG 59.431 57.895 0.00 0.00 0.00 4.35
820 846 0.818040 ACCCGAAGTGTTTGCCTGAC 60.818 55.000 0.00 0.00 0.00 3.51
821 847 0.534203 GACCCGAAGTGTTTGCCTGA 60.534 55.000 0.00 0.00 0.00 3.86
822 848 0.535102 AGACCCGAAGTGTTTGCCTG 60.535 55.000 0.00 0.00 0.00 4.85
823 849 0.182775 AAGACCCGAAGTGTTTGCCT 59.817 50.000 0.00 0.00 0.00 4.75
825 851 0.234884 CGAAGACCCGAAGTGTTTGC 59.765 55.000 0.00 0.00 30.75 3.68
873 907 1.619669 AGGGGGAAAAGATCGGCCT 60.620 57.895 0.00 0.00 0.00 5.19
877 911 0.759346 ATCGGAGGGGGAAAAGATCG 59.241 55.000 0.00 0.00 0.00 3.69
888 922 0.771127 AGAGAGAGGAGATCGGAGGG 59.229 60.000 0.00 0.00 0.00 4.30
898 932 3.865477 GGAGACGACAGAGAGAGGA 57.135 57.895 0.00 0.00 0.00 3.71
1111 1400 3.935024 CCGGGAGATCGGTCAAGA 58.065 61.111 0.00 0.00 44.60 3.02
1300 1595 3.124297 CAGCCATCTTTTGTTCTCGAGAC 59.876 47.826 16.36 11.10 0.00 3.36
1304 1599 1.808945 AGCAGCCATCTTTTGTTCTCG 59.191 47.619 0.00 0.00 0.00 4.04
1308 1603 0.038892 CGCAGCAGCCATCTTTTGTT 60.039 50.000 0.00 0.00 37.52 2.83
1310 1605 1.153901 CCGCAGCAGCCATCTTTTG 60.154 57.895 0.00 0.00 37.52 2.44
1451 1760 2.360553 AGAGTTCGTCTGACTGCATG 57.639 50.000 6.21 0.00 32.57 4.06
1500 1839 2.050351 ATCGCGCCTAATCCGTCG 60.050 61.111 0.00 0.00 0.00 5.12
1502 1841 2.661866 GCATCGCGCCTAATCCGT 60.662 61.111 0.00 0.00 32.94 4.69
1503 1842 2.356313 AGCATCGCGCCTAATCCG 60.356 61.111 0.00 0.00 44.04 4.18
1504 1843 0.880278 TTCAGCATCGCGCCTAATCC 60.880 55.000 0.00 0.00 44.04 3.01
1505 1844 1.127582 GATTCAGCATCGCGCCTAATC 59.872 52.381 0.00 1.10 44.04 1.75
1531 1870 1.299648 GTCATAGCCCTGTGCACCA 59.700 57.895 15.69 1.31 44.83 4.17
1687 2026 2.037136 CAAGAGAACCCGCCTGCAG 61.037 63.158 6.78 6.78 0.00 4.41
1698 2037 3.118555 TGTTTCTTCCCGTGACAAGAGAA 60.119 43.478 0.00 0.00 30.32 2.87
1728 2067 7.890515 TGCACTGAAAATTAATTACCATGTGA 58.109 30.769 20.54 12.00 0.00 3.58
1817 2156 5.517411 TCGAAGTACATAAAAGTGGCATACG 59.483 40.000 0.00 0.00 0.00 3.06
1834 2177 6.128822 GCATCAAATAGCATCGAATCGAAGTA 60.129 38.462 10.12 1.92 39.99 2.24
1932 2278 7.308348 CGACCAGAAAAGTTGTTTATGTACCAT 60.308 37.037 0.00 0.00 0.00 3.55
2014 2366 7.278424 GTCCACTACAAGCAATTATAACGGTTA 59.722 37.037 2.62 2.62 0.00 2.85
2018 2370 6.656314 TGTCCACTACAAGCAATTATAACG 57.344 37.500 0.00 0.00 34.29 3.18
2024 2376 6.476378 AGAACTATGTCCACTACAAGCAATT 58.524 36.000 0.00 0.00 42.70 2.32
2031 2383 6.605471 AACATGAGAACTATGTCCACTACA 57.395 37.500 0.00 0.00 43.86 2.74
2567 2979 2.512692 TCACCATCCATTTCACCCAG 57.487 50.000 0.00 0.00 0.00 4.45
2584 2996 5.268118 ACTCAATAGCAGAATCGACATCA 57.732 39.130 0.00 0.00 0.00 3.07
2803 3215 2.151502 TGACCCAAAACCTGCAAGAA 57.848 45.000 0.00 0.00 34.07 2.52
3072 3484 3.631250 TCTTTGGCAAAGATGGGGATAC 58.369 45.455 32.85 0.00 42.31 2.24
3160 3572 4.527564 CAAAAAGCTAAGAACACTGGACG 58.472 43.478 0.00 0.00 0.00 4.79
3213 3631 6.892658 ATGCTTACAACATTAAGTGAACCA 57.107 33.333 0.00 0.00 32.45 3.67
3289 3709 5.285651 CAATCAGCTTACTACCTAGTGCTC 58.714 45.833 0.00 0.00 34.52 4.26
3292 3712 5.127194 TCACCAATCAGCTTACTACCTAGTG 59.873 44.000 0.00 0.00 37.10 2.74
3316 3736 7.236432 ACACCCAGAACATCTAGATTGCTATAT 59.764 37.037 1.33 0.00 0.00 0.86
3347 3767 4.633126 CACACACCCAGAACATCTAGATTG 59.367 45.833 1.33 0.00 0.00 2.67
3349 3769 3.369892 GCACACACCCAGAACATCTAGAT 60.370 47.826 0.00 0.00 0.00 1.98
3350 3770 2.028112 GCACACACCCAGAACATCTAGA 60.028 50.000 0.00 0.00 0.00 2.43
3351 3771 2.027745 AGCACACACCCAGAACATCTAG 60.028 50.000 0.00 0.00 0.00 2.43
3352 3772 1.977854 AGCACACACCCAGAACATCTA 59.022 47.619 0.00 0.00 0.00 1.98
3353 3773 0.767375 AGCACACACCCAGAACATCT 59.233 50.000 0.00 0.00 0.00 2.90
3354 3774 1.537202 GAAGCACACACCCAGAACATC 59.463 52.381 0.00 0.00 0.00 3.06
3355 3775 1.133823 TGAAGCACACACCCAGAACAT 60.134 47.619 0.00 0.00 0.00 2.71
3356 3776 0.254462 TGAAGCACACACCCAGAACA 59.746 50.000 0.00 0.00 0.00 3.18
3357 3777 3.094386 TGAAGCACACACCCAGAAC 57.906 52.632 0.00 0.00 0.00 3.01
3370 3790 2.012673 CAGCAGATGGTTAGGTGAAGC 58.987 52.381 0.00 0.00 36.01 3.86
3371 3791 2.636830 CCAGCAGATGGTTAGGTGAAG 58.363 52.381 0.00 0.00 44.91 3.02
3402 3822 9.533253 CAATGATTCTACAAAAGGAGTGTTTTT 57.467 29.630 0.00 0.00 0.00 1.94
3431 3852 9.214957 CCAACTATCTTTTGACAGTATTGTGTA 57.785 33.333 0.00 0.00 34.70 2.90
3566 3987 7.558161 TCTGGTTATCACATGCAATTCTTAG 57.442 36.000 0.00 0.00 0.00 2.18
3567 3988 7.936496 TTCTGGTTATCACATGCAATTCTTA 57.064 32.000 0.00 0.00 0.00 2.10
3568 3989 6.839124 TTCTGGTTATCACATGCAATTCTT 57.161 33.333 0.00 0.00 0.00 2.52
3572 3993 6.534475 ACATTTCTGGTTATCACATGCAAT 57.466 33.333 0.00 0.00 0.00 3.56
3576 3997 5.574055 GTGCAACATTTCTGGTTATCACATG 59.426 40.000 0.00 0.00 36.32 3.21
3602 4023 6.431234 AGCAATCTTTACCCACAAAAGTCTAG 59.569 38.462 0.00 0.00 35.79 2.43
3663 4085 7.380423 ACATCTACTATTACCTTGCCAGAAT 57.620 36.000 0.00 0.00 0.00 2.40
3681 4103 7.363031 AGAAGGGAGTATCACCTAAACATCTA 58.637 38.462 0.00 0.00 41.89 1.98
3682 4104 6.206042 AGAAGGGAGTATCACCTAAACATCT 58.794 40.000 0.00 0.00 41.89 2.90
3683 4105 6.487299 AGAAGGGAGTATCACCTAAACATC 57.513 41.667 0.00 0.00 41.89 3.06
3698 4120 4.412060 AGGGGATGTATCTAGAAGGGAG 57.588 50.000 0.00 0.00 0.00 4.30
3699 4121 4.852991 AAGGGGATGTATCTAGAAGGGA 57.147 45.455 0.00 0.00 0.00 4.20
3700 4122 5.913946 AAAAGGGGATGTATCTAGAAGGG 57.086 43.478 0.00 0.00 0.00 3.95
3701 4123 7.237679 TGGATAAAAGGGGATGTATCTAGAAGG 59.762 40.741 0.00 0.00 0.00 3.46
3702 4124 8.207350 TGGATAAAAGGGGATGTATCTAGAAG 57.793 38.462 0.00 0.00 0.00 2.85
3703 4125 8.757307 ATGGATAAAAGGGGATGTATCTAGAA 57.243 34.615 0.00 0.00 0.00 2.10
3704 4126 8.757307 AATGGATAAAAGGGGATGTATCTAGA 57.243 34.615 0.00 0.00 0.00 2.43
3705 4127 9.813826 AAAATGGATAAAAGGGGATGTATCTAG 57.186 33.333 0.00 0.00 0.00 2.43
3706 4128 9.586732 CAAAATGGATAAAAGGGGATGTATCTA 57.413 33.333 0.00 0.00 0.00 1.98
3707 4129 8.288812 TCAAAATGGATAAAAGGGGATGTATCT 58.711 33.333 0.00 0.00 0.00 1.98
3708 4130 8.477419 TCAAAATGGATAAAAGGGGATGTATC 57.523 34.615 0.00 0.00 0.00 2.24
3709 4131 8.873144 CATCAAAATGGATAAAAGGGGATGTAT 58.127 33.333 0.00 0.00 0.00 2.29
3710 4132 8.064389 TCATCAAAATGGATAAAAGGGGATGTA 58.936 33.333 0.00 0.00 33.42 2.29
3711 4133 6.902416 TCATCAAAATGGATAAAAGGGGATGT 59.098 34.615 0.00 0.00 33.42 3.06
3712 4134 7.147689 TGTCATCAAAATGGATAAAAGGGGATG 60.148 37.037 0.00 0.00 33.42 3.51
3713 4135 6.902416 TGTCATCAAAATGGATAAAAGGGGAT 59.098 34.615 0.00 0.00 33.42 3.85
3714 4136 6.259893 TGTCATCAAAATGGATAAAAGGGGA 58.740 36.000 0.00 0.00 33.42 4.81
3715 4137 6.543430 TGTCATCAAAATGGATAAAAGGGG 57.457 37.500 0.00 0.00 33.42 4.79
3716 4138 7.614494 ACTTGTCATCAAAATGGATAAAAGGG 58.386 34.615 0.00 0.00 33.42 3.95
3722 4144 8.620416 CGGAAATACTTGTCATCAAAATGGATA 58.380 33.333 0.00 0.00 33.42 2.59
3723 4145 7.416664 CCGGAAATACTTGTCATCAAAATGGAT 60.417 37.037 0.00 0.00 33.42 3.41
3724 4146 6.127758 CCGGAAATACTTGTCATCAAAATGGA 60.128 38.462 0.00 0.00 33.42 3.41
3725 4147 6.035843 CCGGAAATACTTGTCATCAAAATGG 58.964 40.000 0.00 0.00 33.42 3.16
3726 4148 6.747280 GTCCGGAAATACTTGTCATCAAAATG 59.253 38.462 5.23 0.00 32.87 2.32
3727 4149 6.403200 CGTCCGGAAATACTTGTCATCAAAAT 60.403 38.462 5.23 0.00 32.87 1.82
3728 4150 5.106869 CGTCCGGAAATACTTGTCATCAAAA 60.107 40.000 5.23 0.00 32.87 2.44
3729 4151 4.390603 CGTCCGGAAATACTTGTCATCAAA 59.609 41.667 5.23 0.00 32.87 2.69
3730 4152 3.930229 CGTCCGGAAATACTTGTCATCAA 59.070 43.478 5.23 0.00 0.00 2.57
3731 4153 3.517602 CGTCCGGAAATACTTGTCATCA 58.482 45.455 5.23 0.00 0.00 3.07
3732 4154 2.864343 CCGTCCGGAAATACTTGTCATC 59.136 50.000 5.23 0.00 37.50 2.92
3733 4155 2.498481 TCCGTCCGGAAATACTTGTCAT 59.502 45.455 5.23 0.00 42.05 3.06
3734 4156 1.894466 TCCGTCCGGAAATACTTGTCA 59.106 47.619 5.23 0.00 42.05 3.58
3735 4157 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
3736 4158 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
3737 4159 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
3738 4160 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
3739 4161 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
3740 4162 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
3741 4163 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
3742 4164 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
3743 4165 0.032813 ATACTCCCTCCGTCCGGAAA 60.033 55.000 5.23 0.00 44.66 3.13
3744 4166 0.466922 GATACTCCCTCCGTCCGGAA 60.467 60.000 5.23 0.00 44.66 4.30
3745 4167 1.150081 GATACTCCCTCCGTCCGGA 59.850 63.158 0.00 0.00 42.90 5.14
3746 4168 1.150992 AGATACTCCCTCCGTCCGG 59.849 63.158 0.00 0.00 0.00 5.14
3747 4169 0.179026 TCAGATACTCCCTCCGTCCG 60.179 60.000 0.00 0.00 0.00 4.79
3748 4170 1.143277 TCTCAGATACTCCCTCCGTCC 59.857 57.143 0.00 0.00 0.00 4.79
3749 4171 2.642154 TCTCAGATACTCCCTCCGTC 57.358 55.000 0.00 0.00 0.00 4.79
3750 4172 2.423660 CCTTCTCAGATACTCCCTCCGT 60.424 54.545 0.00 0.00 0.00 4.69
3751 4173 2.235016 CCTTCTCAGATACTCCCTCCG 58.765 57.143 0.00 0.00 0.00 4.63
3752 4174 2.604139 CCCTTCTCAGATACTCCCTCC 58.396 57.143 0.00 0.00 0.00 4.30
3753 4175 1.967779 GCCCTTCTCAGATACTCCCTC 59.032 57.143 0.00 0.00 0.00 4.30
3754 4176 1.578215 AGCCCTTCTCAGATACTCCCT 59.422 52.381 0.00 0.00 0.00 4.20
3755 4177 1.691434 CAGCCCTTCTCAGATACTCCC 59.309 57.143 0.00 0.00 0.00 4.30
3756 4178 2.393646 ACAGCCCTTCTCAGATACTCC 58.606 52.381 0.00 0.00 0.00 3.85
3757 4179 4.211920 ACTACAGCCCTTCTCAGATACTC 58.788 47.826 0.00 0.00 0.00 2.59
3758 4180 4.258457 ACTACAGCCCTTCTCAGATACT 57.742 45.455 0.00 0.00 0.00 2.12
3759 4181 7.120138 GTCTATACTACAGCCCTTCTCAGATAC 59.880 44.444 0.00 0.00 0.00 2.24
3760 4182 7.169591 GTCTATACTACAGCCCTTCTCAGATA 58.830 42.308 0.00 0.00 0.00 1.98
3761 4183 6.007703 GTCTATACTACAGCCCTTCTCAGAT 58.992 44.000 0.00 0.00 0.00 2.90
3762 4184 5.378332 GTCTATACTACAGCCCTTCTCAGA 58.622 45.833 0.00 0.00 0.00 3.27
3763 4185 4.521256 GGTCTATACTACAGCCCTTCTCAG 59.479 50.000 0.00 0.00 0.00 3.35
3764 4186 4.168283 AGGTCTATACTACAGCCCTTCTCA 59.832 45.833 0.00 0.00 0.00 3.27
3765 4187 4.732065 AGGTCTATACTACAGCCCTTCTC 58.268 47.826 0.00 0.00 0.00 2.87
3766 4188 4.817874 AGGTCTATACTACAGCCCTTCT 57.182 45.455 0.00 0.00 0.00 2.85
3767 4189 4.894114 TCAAGGTCTATACTACAGCCCTTC 59.106 45.833 0.00 0.00 0.00 3.46
3768 4190 4.880164 TCAAGGTCTATACTACAGCCCTT 58.120 43.478 0.00 0.00 0.00 3.95
3772 4194 9.896263 GTACTTATTCAAGGTCTATACTACAGC 57.104 37.037 0.00 0.00 35.97 4.40
3795 4223 4.085827 GTCGACGTTCACTTTCGTAAGTAC 59.914 45.833 7.14 2.77 42.67 2.73
3838 4268 6.790319 ACCTTAGTTGAACAAGGATGGTAAT 58.210 36.000 23.71 5.96 43.44 1.89
3925 4355 5.523916 CCTTCATCTTACCATTTACTGACGG 59.476 44.000 0.00 0.00 0.00 4.79
3926 4356 6.338146 TCCTTCATCTTACCATTTACTGACG 58.662 40.000 0.00 0.00 0.00 4.35
3937 4367 8.451748 GTGTACTGAATTTTCCTTCATCTTACC 58.548 37.037 0.00 0.00 34.76 2.85
4025 4456 4.202245 TCAGAACCTCCCAAAACGATAG 57.798 45.455 0.00 0.00 46.19 2.08
4031 4462 4.141041 TCAGGAATTCAGAACCTCCCAAAA 60.141 41.667 7.93 0.00 31.06 2.44
4032 4463 3.397618 TCAGGAATTCAGAACCTCCCAAA 59.602 43.478 7.93 0.00 31.06 3.28
4083 4514 2.729360 TGCACAGTAAATGAACGAGTCG 59.271 45.455 11.85 11.85 0.00 4.18
4188 4619 3.399440 ACTCTCTTCTTCCTTGTGCTG 57.601 47.619 0.00 0.00 0.00 4.41
4295 4729 2.037144 GAGGCAATTCAGCATTGGGAT 58.963 47.619 0.00 0.00 42.51 3.85
4304 4738 3.760151 TGGAAGAATGTGAGGCAATTCAG 59.240 43.478 0.00 0.00 0.00 3.02
4306 4740 3.760684 AGTGGAAGAATGTGAGGCAATTC 59.239 43.478 0.00 0.00 0.00 2.17
4329 4766 7.040409 GGGGTGATTCTCATTATTATTCACCAC 60.040 40.741 17.94 12.44 44.75 4.16
4332 4769 7.234355 AGGGGGTGATTCTCATTATTATTCAC 58.766 38.462 0.00 0.00 0.00 3.18
4334 4771 7.725844 ACAAGGGGGTGATTCTCATTATTATTC 59.274 37.037 0.00 0.00 0.00 1.75
4350 4791 3.292460 TGTACAAAAGAACAAGGGGGTG 58.708 45.455 0.00 0.00 0.00 4.61
4356 4801 6.972901 GGAGTTTTCCTGTACAAAAGAACAAG 59.027 38.462 0.00 0.00 40.58 3.16
4358 4803 5.946972 TGGAGTTTTCCTGTACAAAAGAACA 59.053 36.000 0.00 0.00 44.36 3.18
4359 4804 6.445357 TGGAGTTTTCCTGTACAAAAGAAC 57.555 37.500 0.00 0.07 44.36 3.01
4360 4805 7.469537 TTTGGAGTTTTCCTGTACAAAAGAA 57.530 32.000 0.00 0.00 44.36 2.52
4361 4806 7.317390 GTTTTGGAGTTTTCCTGTACAAAAGA 58.683 34.615 0.00 0.00 44.36 2.52
4367 4812 5.451381 CCTTGGTTTTGGAGTTTTCCTGTAC 60.451 44.000 0.00 0.00 44.36 2.90
4381 4826 2.544486 GCAAGAGCACTCCTTGGTTTTG 60.544 50.000 0.00 3.16 45.92 2.44
4402 4847 1.159285 TGTGCTTCTTTGCAGATCCG 58.841 50.000 0.00 0.00 44.20 4.18
4486 4944 9.463902 AAGCTCACAACTAGTTAGAAGACTATA 57.536 33.333 8.04 0.00 32.07 1.31
4487 4945 7.948034 AGCTCACAACTAGTTAGAAGACTAT 57.052 36.000 8.04 0.00 32.07 2.12
4502 4960 7.327032 GGAAGAAACATAAATGAAGCTCACAAC 59.673 37.037 0.00 0.00 0.00 3.32
4518 4976 7.185318 TGAATATTTGCCATGGAAGAAACAT 57.815 32.000 18.40 2.58 0.00 2.71
4537 4995 9.685276 TCTTTCCAAGAAATTATCAGCTGAATA 57.315 29.630 22.50 12.09 33.83 1.75
4558 5042 4.584743 ACCCTGGAGATGTTTTGTTCTTTC 59.415 41.667 0.00 0.00 0.00 2.62
4560 5044 4.145052 GACCCTGGAGATGTTTTGTTCTT 58.855 43.478 0.00 0.00 0.00 2.52
4562 5046 2.820197 GGACCCTGGAGATGTTTTGTTC 59.180 50.000 0.00 0.00 0.00 3.18
4565 5049 2.821969 CAAGGACCCTGGAGATGTTTTG 59.178 50.000 0.00 0.00 0.00 2.44
4594 5081 1.625315 AGCATAGGACAAGCAGACACA 59.375 47.619 0.00 0.00 0.00 3.72
4605 5092 3.070159 TCAGCATAGGACAAGCATAGGAC 59.930 47.826 0.00 0.00 0.00 3.85
4607 5094 3.758755 TCAGCATAGGACAAGCATAGG 57.241 47.619 0.00 0.00 0.00 2.57
4610 5097 7.175641 GGTAAATTATCAGCATAGGACAAGCAT 59.824 37.037 0.00 0.00 0.00 3.79
4613 5100 7.716998 ACAGGTAAATTATCAGCATAGGACAAG 59.283 37.037 0.00 0.00 0.00 3.16
4614 5101 7.573710 ACAGGTAAATTATCAGCATAGGACAA 58.426 34.615 0.00 0.00 0.00 3.18
4615 5102 7.136822 ACAGGTAAATTATCAGCATAGGACA 57.863 36.000 0.00 0.00 0.00 4.02
4618 5105 7.308229 GCTTGACAGGTAAATTATCAGCATAGG 60.308 40.741 0.00 0.00 0.00 2.57
4629 5116 7.224297 TCTAAAGAGTGCTTGACAGGTAAATT 58.776 34.615 0.00 0.00 33.79 1.82
4632 5119 5.801531 TCTAAAGAGTGCTTGACAGGTAA 57.198 39.130 0.00 0.00 33.79 2.85
4633 5120 5.069914 TGTTCTAAAGAGTGCTTGACAGGTA 59.930 40.000 0.00 0.00 33.79 3.08
4635 5122 4.212214 GTGTTCTAAAGAGTGCTTGACAGG 59.788 45.833 0.00 0.00 33.79 4.00
4655 5216 5.774690 ACTGATGGTAACCATGAAAATGTGT 59.225 36.000 0.00 0.00 45.26 3.72
4690 5251 0.980231 AGGGCTTTGTTTGTTGGGCA 60.980 50.000 0.00 0.00 0.00 5.36
4692 5253 2.682352 CAAAAGGGCTTTGTTTGTTGGG 59.318 45.455 0.00 0.00 39.75 4.12
4743 5304 3.126000 GTCAAGCAAACATAGGAGAGCAC 59.874 47.826 0.00 0.00 0.00 4.40
4770 5331 2.268076 CCACCGCCTTTGTTCCTGG 61.268 63.158 0.00 0.00 0.00 4.45
4792 5353 1.212250 TCCCTTTCTGGCCCTTACCC 61.212 60.000 0.00 0.00 0.00 3.69
4795 5356 1.633945 GTCTTCCCTTTCTGGCCCTTA 59.366 52.381 0.00 0.00 0.00 2.69
4814 5375 5.560966 TGTTCTTTCTTCTTTTGCTTCGT 57.439 34.783 0.00 0.00 0.00 3.85
4925 5486 6.409704 CATCTCTTCAAAACCTATGACTCCA 58.590 40.000 0.00 0.00 0.00 3.86
4926 5487 5.295540 GCATCTCTTCAAAACCTATGACTCC 59.704 44.000 0.00 0.00 0.00 3.85
4940 5513 1.881973 GCAAACACAGGCATCTCTTCA 59.118 47.619 0.00 0.00 0.00 3.02
4951 5524 0.390124 ACATGGCAAGGCAAACACAG 59.610 50.000 0.00 0.00 0.00 3.66
4956 5529 2.353858 CCAGACATGGCAAGGCAAA 58.646 52.632 0.00 0.00 40.52 3.68
4970 5543 0.904865 ATCGCAACCCTGACTCCAGA 60.905 55.000 0.00 0.00 43.02 3.86
4974 5547 1.936547 GAATCATCGCAACCCTGACTC 59.063 52.381 0.00 0.00 0.00 3.36
4977 5550 0.911769 AGGAATCATCGCAACCCTGA 59.088 50.000 0.00 0.00 0.00 3.86
4978 5551 1.303309 GAGGAATCATCGCAACCCTG 58.697 55.000 0.00 0.00 0.00 4.45
4979 5552 0.179073 CGAGGAATCATCGCAACCCT 60.179 55.000 3.93 0.00 32.81 4.34
5021 5633 5.560722 TCAAGGATCACAGGAACAAACTA 57.439 39.130 0.00 0.00 0.00 2.24
5028 5640 2.507058 CCAGGATCAAGGATCACAGGAA 59.493 50.000 8.35 0.00 40.50 3.36
5031 5643 1.211212 TGCCAGGATCAAGGATCACAG 59.789 52.381 6.84 0.00 40.50 3.66
5048 5660 1.555533 GCCCCTATACATCCTACTGCC 59.444 57.143 0.00 0.00 0.00 4.85
5131 5748 3.013921 TCACAACTGAGGTTTCACCAAC 58.986 45.455 0.00 0.00 41.95 3.77
5176 5800 7.874528 TCAGTATATAGCATTGATCACAACTGG 59.125 37.037 0.00 0.00 38.90 4.00
5197 5821 1.134367 CCTCTTTCGTCCGCATCAGTA 59.866 52.381 0.00 0.00 0.00 2.74
5198 5822 0.108615 CCTCTTTCGTCCGCATCAGT 60.109 55.000 0.00 0.00 0.00 3.41
5244 5868 2.819608 GTGCTTGGGATTAGAGCAACAA 59.180 45.455 0.00 0.00 46.77 2.83
5266 5890 5.752472 TGTGGAATTTACTGTTTGTGCATTG 59.248 36.000 0.00 0.00 0.00 2.82
5418 6081 9.621629 ACATCCTGTAAAATCGGATAAAATACA 57.378 29.630 0.00 0.00 35.84 2.29
5429 6328 9.801873 AATAATTTCCAACATCCTGTAAAATCG 57.198 29.630 0.00 0.00 0.00 3.34
5439 6338 8.042944 ACAAAATGCAATAATTTCCAACATCC 57.957 30.769 0.00 0.00 0.00 3.51
5446 6345 8.998377 ACACCTTAACAAAATGCAATAATTTCC 58.002 29.630 0.00 0.00 0.00 3.13
5466 6371 4.718961 ACAGTCAAGCTCAAATACACCTT 58.281 39.130 0.00 0.00 0.00 3.50
5469 6374 5.931441 AGAACAGTCAAGCTCAAATACAC 57.069 39.130 0.00 0.00 0.00 2.90
5471 6376 6.203723 AGTCAAGAACAGTCAAGCTCAAATAC 59.796 38.462 0.00 0.00 0.00 1.89
5473 6378 5.128919 AGTCAAGAACAGTCAAGCTCAAAT 58.871 37.500 0.00 0.00 0.00 2.32
5474 6379 4.517285 AGTCAAGAACAGTCAAGCTCAAA 58.483 39.130 0.00 0.00 0.00 2.69
5475 6380 4.142609 AGTCAAGAACAGTCAAGCTCAA 57.857 40.909 0.00 0.00 0.00 3.02
5477 6382 3.183373 CGAAGTCAAGAACAGTCAAGCTC 59.817 47.826 0.00 0.00 0.00 4.09
5478 6383 3.126831 CGAAGTCAAGAACAGTCAAGCT 58.873 45.455 0.00 0.00 0.00 3.74
5479 6384 2.866762 ACGAAGTCAAGAACAGTCAAGC 59.133 45.455 0.00 0.00 29.74 4.01
5480 6385 3.246226 CCACGAAGTCAAGAACAGTCAAG 59.754 47.826 0.00 0.00 41.61 3.02
5485 6390 1.581934 TGCCACGAAGTCAAGAACAG 58.418 50.000 0.00 0.00 41.61 3.16
5515 6487 2.032204 GCTCTGATGCTAATTTGGAGCG 60.032 50.000 0.00 0.00 43.19 5.03
5516 6488 2.947652 TGCTCTGATGCTAATTTGGAGC 59.052 45.455 0.00 0.00 43.14 4.70
5519 6491 4.579340 AGTGATGCTCTGATGCTAATTTGG 59.421 41.667 0.00 0.00 0.00 3.28
5520 6492 5.752892 AGTGATGCTCTGATGCTAATTTG 57.247 39.130 0.00 0.00 0.00 2.32
5521 6493 5.884232 TCAAGTGATGCTCTGATGCTAATTT 59.116 36.000 0.00 0.00 0.00 1.82
5523 6495 5.032327 TCAAGTGATGCTCTGATGCTAAT 57.968 39.130 0.00 0.00 0.00 1.73
5526 6498 3.206964 CATCAAGTGATGCTCTGATGCT 58.793 45.455 8.29 0.00 44.44 3.79
5527 6499 3.610786 CATCAAGTGATGCTCTGATGC 57.389 47.619 8.29 0.00 44.44 3.91
5582 6556 4.339872 TGATGCAAATTTTGGTCAAGCT 57.660 36.364 10.96 0.00 0.00 3.74
5589 6563 4.693566 AGCACTTGATGATGCAAATTTTGG 59.306 37.500 10.96 0.00 44.59 3.28
5610 6584 8.599774 CAGATTTGCTCTAGTAGAAGTAAAAGC 58.400 37.037 0.64 0.12 31.13 3.51
5611 6585 9.092876 CCAGATTTGCTCTAGTAGAAGTAAAAG 57.907 37.037 0.64 3.77 31.13 2.27
5618 6595 7.956328 TTACTCCAGATTTGCTCTAGTAGAA 57.044 36.000 0.64 0.00 30.38 2.10
5659 6636 7.172361 GCCTCCTTCAATACTTCAATAGATGAC 59.828 40.741 0.00 0.00 37.92 3.06
5692 6669 9.440773 GATCACTTATTTACATATGAGATGGCA 57.559 33.333 10.38 0.00 0.00 4.92
5693 6670 8.887717 GGATCACTTATTTACATATGAGATGGC 58.112 37.037 10.38 0.00 0.00 4.40
5695 6672 9.091784 CGGGATCACTTATTTACATATGAGATG 57.908 37.037 10.38 0.00 0.00 2.90
5696 6673 9.035890 TCGGGATCACTTATTTACATATGAGAT 57.964 33.333 10.38 2.88 0.00 2.75
5697 6674 8.417273 TCGGGATCACTTATTTACATATGAGA 57.583 34.615 10.38 0.00 0.00 3.27
5698 6675 7.276658 GCTCGGGATCACTTATTTACATATGAG 59.723 40.741 10.38 0.00 0.00 2.90
5699 6676 7.039011 AGCTCGGGATCACTTATTTACATATGA 60.039 37.037 10.38 0.00 0.00 2.15
5700 6677 7.099764 AGCTCGGGATCACTTATTTACATATG 58.900 38.462 0.00 0.00 0.00 1.78
5701 6678 7.246171 AGCTCGGGATCACTTATTTACATAT 57.754 36.000 0.00 0.00 0.00 1.78
5702 6679 6.665992 AGCTCGGGATCACTTATTTACATA 57.334 37.500 0.00 0.00 0.00 2.29
5710 6687 3.004419 CGTGAATAGCTCGGGATCACTTA 59.996 47.826 0.00 0.00 38.54 2.24
5712 6689 1.338337 CGTGAATAGCTCGGGATCACT 59.662 52.381 0.00 0.00 38.54 3.41
5732 6709 9.262358 GATAAATTACACCCTCTAACAGATGAC 57.738 37.037 0.00 0.00 0.00 3.06
5739 6716 9.614792 AGTCATTGATAAATTACACCCTCTAAC 57.385 33.333 0.00 0.00 0.00 2.34
5878 6946 1.860676 CGACTTGAAAACCCGACAGA 58.139 50.000 0.00 0.00 0.00 3.41
5879 6947 0.234884 GCGACTTGAAAACCCGACAG 59.765 55.000 0.00 0.00 0.00 3.51
5880 6948 0.179067 AGCGACTTGAAAACCCGACA 60.179 50.000 0.00 0.00 0.00 4.35
5881 6949 0.234884 CAGCGACTTGAAAACCCGAC 59.765 55.000 0.00 0.00 0.00 4.79
5882 6950 0.105224 TCAGCGACTTGAAAACCCGA 59.895 50.000 0.00 0.00 0.00 5.14
5883 6951 0.941542 TTCAGCGACTTGAAAACCCG 59.058 50.000 0.00 0.00 34.32 5.28
5884 6952 2.098443 TGTTTCAGCGACTTGAAAACCC 59.902 45.455 10.44 2.46 45.62 4.11
5885 6953 3.414549 TGTTTCAGCGACTTGAAAACC 57.585 42.857 10.44 2.98 45.62 3.27
5886 6954 5.748592 AGTATGTTTCAGCGACTTGAAAAC 58.251 37.500 10.44 7.02 45.62 2.43


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.