Multiple sequence alignment - TraesCS2D01G546300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G546300 chr2D 100.000 2986 0 0 626 3611 622917419 622914434 0.000000e+00 5515.0
1 TraesCS2D01G546300 chr2D 100.000 433 0 0 1 433 622918044 622917612 0.000000e+00 800.0
2 TraesCS2D01G546300 chr2B 92.528 1432 86 6 1381 2809 765062707 765061294 0.000000e+00 2032.0
3 TraesCS2D01G546300 chr2B 81.109 487 64 15 635 1109 765063466 765062996 7.370000e-97 364.0
4 TraesCS2D01G546300 chr2B 81.461 356 38 14 2855 3203 765061192 765060858 2.140000e-67 267.0
5 TraesCS2D01G546300 chr2B 91.765 170 10 3 101 269 765064021 765063855 2.170000e-57 233.0
6 TraesCS2D01G546300 chr2B 89.726 146 11 3 1158 1299 765062838 765062693 2.210000e-42 183.0
7 TraesCS2D01G546300 chr2A 91.641 646 40 8 2167 2809 754349813 754349179 0.000000e+00 881.0
8 TraesCS2D01G546300 chr2A 92.407 540 33 3 2120 2655 754340556 754340021 0.000000e+00 763.0
9 TraesCS2D01G546300 chr2A 92.611 406 22 5 1765 2167 754350248 754349848 8.690000e-161 577.0
10 TraesCS2D01G546300 chr2A 88.295 393 25 10 1 376 754353204 754352816 5.500000e-123 451.0
11 TraesCS2D01G546300 chr2A 82.857 455 45 14 630 1067 754352790 754352352 9.460000e-101 377.0
12 TraesCS2D01G546300 chr2A 88.644 317 20 4 1463 1771 754351847 754351539 4.400000e-99 372.0
13 TraesCS2D01G546300 chr2A 94.186 86 3 2 1298 1382 654872220 654872304 2.930000e-26 130.0
14 TraesCS2D01G546300 chr2A 82.609 115 7 6 3089 3203 754348659 754348558 4.970000e-14 89.8
15 TraesCS2D01G546300 chr5B 87.935 431 48 4 2184 2613 35530554 35530981 4.160000e-139 505.0
16 TraesCS2D01G546300 chr5B 87.619 105 10 3 1292 1394 51843387 51843284 6.330000e-23 119.0
17 TraesCS2D01G546300 chr5D 87.442 430 50 4 2185 2613 41363401 41363827 3.240000e-135 492.0
18 TraesCS2D01G546300 chr5A 89.114 395 42 1 2220 2613 29681815 29682209 1.170000e-134 490.0
19 TraesCS2D01G546300 chr5A 93.258 89 4 2 1298 1385 55159062 55158975 2.930000e-26 130.0
20 TraesCS2D01G546300 chr5A 89.796 98 7 3 1288 1383 55158972 55159068 4.900000e-24 122.0
21 TraesCS2D01G546300 chr7A 89.286 112 5 6 1288 1397 153377803 153377909 2.260000e-27 134.0
22 TraesCS2D01G546300 chr7A 94.186 86 4 1 1299 1383 475977266 475977181 2.930000e-26 130.0
23 TraesCS2D01G546300 chr3A 93.333 90 6 0 1298 1387 65949492 65949403 2.260000e-27 134.0
24 TraesCS2D01G546300 chr6B 89.899 99 6 4 1287 1383 520230343 520230439 1.360000e-24 124.0
25 TraesCS2D01G546300 chr1B 87.850 107 5 8 1298 1398 673858851 673858955 6.330000e-23 119.0
26 TraesCS2D01G546300 chr7B 97.297 37 1 0 1158 1194 84023512 84023548 3.010000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G546300 chr2D 622914434 622918044 3610 True 3157.500000 5515 100.000000 1 3611 2 chr2D.!!$R1 3610
1 TraesCS2D01G546300 chr2B 765060858 765064021 3163 True 615.800000 2032 87.317800 101 3203 5 chr2B.!!$R1 3102
2 TraesCS2D01G546300 chr2A 754340021 754340556 535 True 763.000000 763 92.407000 2120 2655 1 chr2A.!!$R1 535
3 TraesCS2D01G546300 chr2A 754348558 754353204 4646 True 457.966667 881 87.776167 1 3203 6 chr2A.!!$R2 3202

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
394 658 0.103208 CCGAGCTCTGCTACCGATTT 59.897 55.0 12.85 0.0 39.88 2.17 F
966 1241 0.241749 CCATTTTCTTCTGCGCTGCA 59.758 50.0 9.73 0.0 36.92 4.41 F
1500 2007 0.530870 GGAGTATCACGGAAGCCTGC 60.531 60.0 0.00 0.0 36.25 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1919 3731 0.465097 AATCCCAGATCTTGGCAGCG 60.465 55.000 8.01 0.0 46.32 5.18 R
2289 4143 1.224592 CATAACCCGCTTGGCTCCT 59.775 57.895 0.00 0.0 37.83 3.69 R
3363 5495 0.239613 GTGTGTGTGTGTGTGTGCAA 59.760 50.000 0.00 0.0 0.00 4.08 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
64 65 3.935024 CCGGGAGATCGGTCAAGA 58.065 61.111 0.00 0.00 44.60 3.02
65 66 2.199117 CCGGGAGATCGGTCAAGAA 58.801 57.895 0.00 0.00 44.60 2.52
277 281 3.865477 GGAGACGACAGAGAGAGGA 57.135 57.895 0.00 0.00 0.00 3.71
287 296 0.771127 AGAGAGAGGAGATCGGAGGG 59.229 60.000 0.00 0.00 0.00 4.30
298 307 0.759346 ATCGGAGGGGGAAAAGATCG 59.241 55.000 0.00 0.00 0.00 3.69
302 311 1.619669 AGGGGGAAAAGATCGGCCT 60.620 57.895 0.00 0.00 0.00 5.19
349 608 0.865769 CCGAAGACCCGAAGTGTTTG 59.134 55.000 0.00 0.00 30.75 2.93
351 610 0.591659 GAAGACCCGAAGTGTTTGCC 59.408 55.000 0.00 0.00 30.75 4.52
352 611 0.182775 AAGACCCGAAGTGTTTGCCT 59.817 50.000 0.00 0.00 0.00 4.75
353 612 0.535102 AGACCCGAAGTGTTTGCCTG 60.535 55.000 0.00 0.00 0.00 4.85
354 613 0.534203 GACCCGAAGTGTTTGCCTGA 60.534 55.000 0.00 0.00 0.00 3.86
355 614 0.818040 ACCCGAAGTGTTTGCCTGAC 60.818 55.000 0.00 0.00 0.00 3.51
356 615 1.569493 CCGAAGTGTTTGCCTGACG 59.431 57.895 0.00 0.00 0.00 4.35
357 616 1.157870 CCGAAGTGTTTGCCTGACGT 61.158 55.000 0.00 0.00 0.00 4.34
364 628 0.736053 GTTTGCCTGACGTTGTTGGA 59.264 50.000 0.00 0.00 0.00 3.53
369 633 0.179056 CCTGACGTTGTTGGACTGGT 60.179 55.000 0.00 0.00 0.00 4.00
391 655 3.518998 GCCGAGCTCTGCTACCGA 61.519 66.667 21.45 0.00 39.88 4.69
394 658 0.103208 CCGAGCTCTGCTACCGATTT 59.897 55.000 12.85 0.00 39.88 2.17
395 659 1.482278 CGAGCTCTGCTACCGATTTC 58.518 55.000 12.85 0.00 39.88 2.17
396 660 1.482278 GAGCTCTGCTACCGATTTCG 58.518 55.000 6.43 0.00 39.88 3.46
406 670 0.462047 ACCGATTTCGCCCAGATCAC 60.462 55.000 0.00 0.00 38.18 3.06
410 674 0.462047 ATTTCGCCCAGATCACGTCC 60.462 55.000 0.00 0.00 0.00 4.79
411 675 2.515996 TTTCGCCCAGATCACGTCCC 62.516 60.000 0.00 0.00 0.00 4.46
412 676 4.530857 CGCCCAGATCACGTCCCC 62.531 72.222 0.00 0.00 0.00 4.81
413 677 4.176752 GCCCAGATCACGTCCCCC 62.177 72.222 0.00 0.00 0.00 5.40
427 691 4.275508 CCCCCATCGGCCTCATGG 62.276 72.222 19.51 19.51 40.67 3.66
656 920 4.215742 TGGGATTAGGTCGCGCGG 62.216 66.667 31.69 11.75 42.37 6.46
674 938 3.204827 CGCGGGCAGAAATCCCAG 61.205 66.667 0.00 0.00 44.11 4.45
764 1029 1.403687 CCTCCCCCGCTCCTTTCTAG 61.404 65.000 0.00 0.00 0.00 2.43
799 1064 1.289380 GGAGATCCATACGTCCGGC 59.711 63.158 0.00 0.00 35.64 6.13
800 1065 1.289380 GAGATCCATACGTCCGGCC 59.711 63.158 0.00 0.00 0.00 6.13
856 1121 2.328099 CCTGGCCTGCTGTTCGTTC 61.328 63.158 3.32 0.00 0.00 3.95
870 1135 3.243941 TGTTCGTTCCGATTCCTTTCTGA 60.244 43.478 0.00 0.00 35.23 3.27
871 1136 3.887621 TCGTTCCGATTCCTTTCTGAT 57.112 42.857 0.00 0.00 0.00 2.90
872 1137 4.202245 TCGTTCCGATTCCTTTCTGATT 57.798 40.909 0.00 0.00 0.00 2.57
873 1138 4.575885 TCGTTCCGATTCCTTTCTGATTT 58.424 39.130 0.00 0.00 0.00 2.17
875 1140 4.631813 CGTTCCGATTCCTTTCTGATTTCT 59.368 41.667 0.00 0.00 0.00 2.52
878 1152 3.691118 CCGATTCCTTTCTGATTTCTGCA 59.309 43.478 0.00 0.00 0.00 4.41
898 1172 2.128771 CCAGATTTGGTTCCATCGGT 57.871 50.000 0.00 0.00 39.79 4.69
907 1181 0.815615 GTTCCATCGGTCCTGATGCC 60.816 60.000 14.60 5.13 43.52 4.40
921 1195 4.217035 TGCCACGCGCATTATTCT 57.783 50.000 5.73 0.00 44.64 2.40
922 1196 3.371087 TGCCACGCGCATTATTCTA 57.629 47.368 5.73 0.00 44.64 2.10
927 1201 3.322369 CCACGCGCATTATTCTATGGTA 58.678 45.455 5.73 0.00 0.00 3.25
930 1204 5.158494 CACGCGCATTATTCTATGGTAGTA 58.842 41.667 5.73 0.00 0.00 1.82
931 1205 5.060569 CACGCGCATTATTCTATGGTAGTAC 59.939 44.000 5.73 0.00 0.00 2.73
937 1211 6.091441 GCATTATTCTATGGTAGTACTGCTGC 59.909 42.308 10.95 5.03 0.00 5.25
938 1212 3.710326 TTCTATGGTAGTACTGCTGCG 57.290 47.619 10.95 0.00 0.00 5.18
941 1216 2.586258 ATGGTAGTACTGCTGCGAAG 57.414 50.000 10.95 0.00 0.00 3.79
961 1236 2.227388 AGTTGAGCCATTTTCTTCTGCG 59.773 45.455 0.00 0.00 0.00 5.18
962 1237 0.523072 TGAGCCATTTTCTTCTGCGC 59.477 50.000 0.00 0.00 0.00 6.09
963 1238 0.807496 GAGCCATTTTCTTCTGCGCT 59.193 50.000 9.73 0.00 0.00 5.92
964 1239 0.524862 AGCCATTTTCTTCTGCGCTG 59.475 50.000 9.73 8.88 0.00 5.18
965 1240 1.074872 GCCATTTTCTTCTGCGCTGC 61.075 55.000 9.73 0.00 0.00 5.25
966 1241 0.241749 CCATTTTCTTCTGCGCTGCA 59.758 50.000 9.73 0.00 36.92 4.41
979 1254 2.117779 GCTGCAGGAAAGCCTAGCC 61.118 63.158 17.12 0.00 44.80 3.93
1040 1319 1.069513 CAAGTGTTCGTCAGGTACCCA 59.930 52.381 8.74 0.00 0.00 4.51
1080 1370 2.054799 AGTCTTGAACCACCTTAGGCA 58.945 47.619 0.00 0.00 0.00 4.75
1081 1371 2.152016 GTCTTGAACCACCTTAGGCAC 58.848 52.381 0.00 0.00 0.00 5.01
1094 1384 4.520492 ACCTTAGGCACTTCAAACTTGATG 59.480 41.667 0.00 4.31 41.75 3.07
1098 1388 3.953612 AGGCACTTCAAACTTGATGTTCA 59.046 39.130 7.94 0.00 41.76 3.18
1106 1396 6.882610 TCAAACTTGATGTTCATAGCAGTT 57.117 33.333 0.00 0.00 38.03 3.16
1107 1397 7.977789 TCAAACTTGATGTTCATAGCAGTTA 57.022 32.000 0.00 0.00 38.03 2.24
1108 1398 7.806690 TCAAACTTGATGTTCATAGCAGTTAC 58.193 34.615 0.00 0.00 38.03 2.50
1109 1399 6.408858 AACTTGATGTTCATAGCAGTTACG 57.591 37.500 0.00 0.00 32.63 3.18
1110 1400 5.479306 ACTTGATGTTCATAGCAGTTACGT 58.521 37.500 0.00 0.00 0.00 3.57
1111 1401 6.627243 ACTTGATGTTCATAGCAGTTACGTA 58.373 36.000 0.00 0.00 0.00 3.57
1112 1402 7.094631 ACTTGATGTTCATAGCAGTTACGTAA 58.905 34.615 3.29 3.29 0.00 3.18
1194 1601 6.581171 AACCTTGGAGAAAAATCATGACTC 57.419 37.500 0.00 0.00 0.00 3.36
1210 1682 6.817184 TCATGACTCCTAGTTAAACCTATGC 58.183 40.000 0.00 0.00 0.00 3.14
1260 1732 4.563580 GCCACTCCAAACTTCAGACTATGA 60.564 45.833 0.00 0.00 35.62 2.15
1305 1777 6.451064 AAAAATAATTAACTGCTCCCTCCG 57.549 37.500 0.00 0.00 0.00 4.63
1306 1778 4.772886 AATAATTAACTGCTCCCTCCGT 57.227 40.909 0.00 0.00 0.00 4.69
1307 1779 2.693267 AATTAACTGCTCCCTCCGTC 57.307 50.000 0.00 0.00 0.00 4.79
1308 1780 0.831307 ATTAACTGCTCCCTCCGTCC 59.169 55.000 0.00 0.00 0.00 4.79
1309 1781 1.262640 TTAACTGCTCCCTCCGTCCC 61.263 60.000 0.00 0.00 0.00 4.46
1310 1782 2.449967 TAACTGCTCCCTCCGTCCCA 62.450 60.000 0.00 0.00 0.00 4.37
1311 1783 3.003173 CTGCTCCCTCCGTCCCAA 61.003 66.667 0.00 0.00 0.00 4.12
1312 1784 2.528127 TGCTCCCTCCGTCCCAAA 60.528 61.111 0.00 0.00 0.00 3.28
1313 1785 2.124507 CTGCTCCCTCCGTCCCAAAA 62.125 60.000 0.00 0.00 0.00 2.44
1314 1786 1.303282 GCTCCCTCCGTCCCAAAAT 59.697 57.895 0.00 0.00 0.00 1.82
1315 1787 0.544697 GCTCCCTCCGTCCCAAAATA 59.455 55.000 0.00 0.00 0.00 1.40
1316 1788 1.064979 GCTCCCTCCGTCCCAAAATAA 60.065 52.381 0.00 0.00 0.00 1.40
1317 1789 2.919228 CTCCCTCCGTCCCAAAATAAG 58.081 52.381 0.00 0.00 0.00 1.73
1318 1790 2.238898 CTCCCTCCGTCCCAAAATAAGT 59.761 50.000 0.00 0.00 0.00 2.24
1319 1791 2.026636 TCCCTCCGTCCCAAAATAAGTG 60.027 50.000 0.00 0.00 0.00 3.16
1320 1792 2.290705 CCCTCCGTCCCAAAATAAGTGT 60.291 50.000 0.00 0.00 0.00 3.55
1321 1793 3.007635 CCTCCGTCCCAAAATAAGTGTC 58.992 50.000 0.00 0.00 0.00 3.67
1322 1794 3.307480 CCTCCGTCCCAAAATAAGTGTCT 60.307 47.826 0.00 0.00 0.00 3.41
1323 1795 3.933332 CTCCGTCCCAAAATAAGTGTCTC 59.067 47.826 0.00 0.00 0.00 3.36
1324 1796 3.325425 TCCGTCCCAAAATAAGTGTCTCA 59.675 43.478 0.00 0.00 0.00 3.27
1325 1797 4.069304 CCGTCCCAAAATAAGTGTCTCAA 58.931 43.478 0.00 0.00 0.00 3.02
1326 1798 4.083484 CCGTCCCAAAATAAGTGTCTCAAC 60.083 45.833 0.00 0.00 0.00 3.18
1327 1799 4.755123 CGTCCCAAAATAAGTGTCTCAACT 59.245 41.667 0.00 0.00 0.00 3.16
1328 1800 5.238650 CGTCCCAAAATAAGTGTCTCAACTT 59.761 40.000 0.00 0.00 42.89 2.66
1329 1801 6.238648 CGTCCCAAAATAAGTGTCTCAACTTT 60.239 38.462 0.00 0.00 40.77 2.66
1330 1802 7.041644 CGTCCCAAAATAAGTGTCTCAACTTTA 60.042 37.037 0.00 0.00 40.77 1.85
1331 1803 8.290325 GTCCCAAAATAAGTGTCTCAACTTTAG 58.710 37.037 0.00 0.00 40.77 1.85
1332 1804 7.996644 TCCCAAAATAAGTGTCTCAACTTTAGT 59.003 33.333 0.00 0.00 40.77 2.24
1333 1805 9.280174 CCCAAAATAAGTGTCTCAACTTTAGTA 57.720 33.333 0.00 0.00 40.77 1.82
1366 1838 9.268268 TGTACTAAGTTGAGACACTTATTTTGG 57.732 33.333 0.00 0.00 38.34 3.28
1367 1839 7.745620 ACTAAGTTGAGACACTTATTTTGGG 57.254 36.000 0.00 0.00 38.34 4.12
1368 1840 7.514721 ACTAAGTTGAGACACTTATTTTGGGA 58.485 34.615 0.00 0.00 38.34 4.37
1369 1841 6.635030 AAGTTGAGACACTTATTTTGGGAC 57.365 37.500 0.00 0.00 35.10 4.46
1370 1842 4.755123 AGTTGAGACACTTATTTTGGGACG 59.245 41.667 0.00 0.00 0.00 4.79
1371 1843 3.670625 TGAGACACTTATTTTGGGACGG 58.329 45.455 0.00 0.00 0.00 4.79
1372 1844 3.325425 TGAGACACTTATTTTGGGACGGA 59.675 43.478 0.00 0.00 0.00 4.69
1373 1845 3.933332 GAGACACTTATTTTGGGACGGAG 59.067 47.826 0.00 0.00 0.00 4.63
1374 1846 3.007635 GACACTTATTTTGGGACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
1375 1847 2.640826 ACACTTATTTTGGGACGGAGGA 59.359 45.455 0.00 0.00 0.00 3.71
1376 1848 3.073356 ACACTTATTTTGGGACGGAGGAA 59.927 43.478 0.00 0.00 0.00 3.36
1377 1849 3.689649 CACTTATTTTGGGACGGAGGAAG 59.310 47.826 0.00 0.00 0.00 3.46
1378 1850 3.329814 ACTTATTTTGGGACGGAGGAAGT 59.670 43.478 0.00 0.00 0.00 3.01
1379 1851 4.533311 ACTTATTTTGGGACGGAGGAAGTA 59.467 41.667 0.00 0.00 0.00 2.24
1386 1858 4.806892 TGGGACGGAGGAAGTATATAACA 58.193 43.478 0.00 0.00 0.00 2.41
1390 1862 7.177921 TGGGACGGAGGAAGTATATAACATAAG 59.822 40.741 0.00 0.00 0.00 1.73
1461 1968 8.879427 ACTTAAATGCTTATAAACAACTCCCT 57.121 30.769 0.00 0.00 0.00 4.20
1490 1997 4.696479 AATGATCAGGTGGGAGTATCAC 57.304 45.455 0.09 0.00 40.71 3.06
1500 2007 0.530870 GGAGTATCACGGAAGCCTGC 60.531 60.000 0.00 0.00 36.25 4.85
1539 2046 7.108847 TCTTCTCTCTGGATTCCTTTGAAATC 58.891 38.462 3.95 0.00 33.32 2.17
1580 2095 5.003778 GCTTGTGATGCTTAGCAAAATAACG 59.996 40.000 12.08 0.00 43.62 3.18
1590 2105 6.128956 GCTTAGCAAAATAACGTGATGCAAAA 60.129 34.615 0.00 6.53 39.42 2.44
1636 2151 1.602311 GTGCTATGATGGGAAGCCTG 58.398 55.000 0.00 0.00 35.33 4.85
1648 2163 2.095461 GGAAGCCTGGGAAACAATCTC 58.905 52.381 0.00 0.00 0.00 2.75
1721 2236 0.677731 TGCTGTCTGCCAGGTATTGC 60.678 55.000 0.00 0.00 41.81 3.56
1744 2259 3.450457 TGCTTCCTTCAAACCACAAATGT 59.550 39.130 0.00 0.00 0.00 2.71
1758 2273 5.105554 ACCACAAATGTTTGCTTTGTCAGTA 60.106 36.000 5.44 0.00 43.15 2.74
1778 3590 6.878923 TCAGTAATAAGAACCAACATGACCTG 59.121 38.462 0.00 0.00 0.00 4.00
1798 3610 5.533528 ACCTGTTTTAAGTCATGTGGTAACC 59.466 40.000 0.00 0.00 0.00 2.85
1808 3620 3.810941 TCATGTGGTAACCTTTTGTCGTC 59.189 43.478 0.00 0.00 0.00 4.20
1877 3689 6.301687 ACGATATCGATGATCCGGTATTAG 57.698 41.667 30.75 0.00 43.02 1.73
1881 3693 7.307811 CGATATCGATGATCCGGTATTAGCTAA 60.308 40.741 20.50 8.99 43.02 3.09
1949 3761 6.393171 CAAGATCTGGGATTTTTCTTTGGTC 58.607 40.000 0.00 0.00 0.00 4.02
1964 3779 5.741011 TCTTTGGTCGCCTTAATTGTCTAT 58.259 37.500 0.00 0.00 0.00 1.98
1975 3790 7.610305 CGCCTTAATTGTCTATAATGGGGTTAT 59.390 37.037 0.00 0.00 36.90 1.89
2106 3921 9.241317 GCCATAATGTAAGAGTTTGAAATGATG 57.759 33.333 0.00 0.00 0.00 3.07
2107 3922 9.241317 CCATAATGTAAGAGTTTGAAATGATGC 57.759 33.333 0.00 0.00 0.00 3.91
2108 3923 9.791820 CATAATGTAAGAGTTTGAAATGATGCA 57.208 29.630 0.00 0.00 0.00 3.96
2182 4036 6.849502 TGAGGTACTTGTTTATCTAGTCACG 58.150 40.000 0.00 0.00 41.55 4.35
2289 4143 1.140852 CTCAAGGTGGTGGACAACTCA 59.859 52.381 0.00 0.00 46.59 3.41
2415 4269 2.135933 GTCAAGAAAGGAGACGTGGTG 58.864 52.381 0.00 0.00 0.00 4.17
2427 4281 2.344872 GTGGTGTACGGGGTGGTC 59.655 66.667 0.00 0.00 0.00 4.02
2631 4485 5.605534 TGAGATTTCTATCTGCTTACCTGC 58.394 41.667 0.00 0.00 41.23 4.85
2667 4524 1.368641 CGCGGAAAATGGACATCTCA 58.631 50.000 0.00 0.00 0.00 3.27
2713 4570 8.540507 TTGGTTCTCTATTGCTACTCTATTCT 57.459 34.615 0.00 0.00 0.00 2.40
2809 4666 7.490657 AACCAGACAAGGATATGTGTACTTA 57.509 36.000 0.00 0.00 32.57 2.24
2821 4752 7.653713 GGATATGTGTACTTAGTCTCCACATTG 59.346 40.741 21.53 0.00 42.41 2.82
2831 4762 8.424918 ACTTAGTCTCCACATTGTATCCTTATG 58.575 37.037 0.00 0.00 0.00 1.90
2836 4767 7.770897 GTCTCCACATTGTATCCTTATGTTCTT 59.229 37.037 0.00 0.00 30.45 2.52
2837 4768 8.328758 TCTCCACATTGTATCCTTATGTTCTTT 58.671 33.333 0.00 0.00 30.45 2.52
2838 4769 8.877864 TCCACATTGTATCCTTATGTTCTTTT 57.122 30.769 0.00 0.00 30.45 2.27
2839 4770 9.967451 TCCACATTGTATCCTTATGTTCTTTTA 57.033 29.630 0.00 0.00 30.45 1.52
2879 4810 7.753309 ACGTAGTTTGAGATATCTATCTGCT 57.247 36.000 4.89 3.74 37.78 4.24
2880 4811 7.812648 ACGTAGTTTGAGATATCTATCTGCTC 58.187 38.462 4.89 0.00 37.78 4.26
2889 4820 9.462606 TGAGATATCTATCTGCTCCGTTTTATA 57.537 33.333 4.89 0.00 42.79 0.98
2907 4838 3.753294 ATATCCCTGTTAGTTCCGCAG 57.247 47.619 0.00 0.00 0.00 5.18
2930 4861 1.358787 TGAAATGGGCATCTCCAAGGT 59.641 47.619 0.00 0.00 40.62 3.50
2931 4862 2.225343 TGAAATGGGCATCTCCAAGGTT 60.225 45.455 0.00 0.00 40.62 3.50
2932 4863 1.856629 AATGGGCATCTCCAAGGTTG 58.143 50.000 0.00 0.00 40.62 3.77
2996 4945 5.538053 TCCATCTTTGCTTTGGTCATTTGTA 59.462 36.000 0.00 0.00 0.00 2.41
3001 4950 6.756074 TCTTTGCTTTGGTCATTTGTAGTTTG 59.244 34.615 0.00 0.00 0.00 2.93
3005 4954 5.466393 GCTTTGGTCATTTGTAGTTTGCAAT 59.534 36.000 0.00 0.00 0.00 3.56
3034 4983 8.986929 ATCTACTCCAAAAAGAAGAATATGGG 57.013 34.615 0.00 0.00 0.00 4.00
3035 4984 8.158025 TCTACTCCAAAAAGAAGAATATGGGA 57.842 34.615 0.00 0.00 0.00 4.37
3038 4987 6.011628 ACTCCAAAAAGAAGAATATGGGAGGA 60.012 38.462 0.00 0.00 42.79 3.71
3039 4988 6.985225 TCCAAAAAGAAGAATATGGGAGGAT 58.015 36.000 0.00 0.00 0.00 3.24
3041 4990 7.998964 TCCAAAAAGAAGAATATGGGAGGATAC 59.001 37.037 0.00 0.00 0.00 2.24
3043 4992 6.996180 AAAGAAGAATATGGGAGGATACGA 57.004 37.500 0.00 0.00 46.39 3.43
3044 4993 7.560796 AAAGAAGAATATGGGAGGATACGAT 57.439 36.000 0.00 0.00 46.39 3.73
3045 4994 6.537453 AGAAGAATATGGGAGGATACGATG 57.463 41.667 0.00 0.00 46.39 3.84
3046 4995 6.019748 AGAAGAATATGGGAGGATACGATGT 58.980 40.000 0.00 0.00 46.39 3.06
3047 4996 7.182760 AGAAGAATATGGGAGGATACGATGTA 58.817 38.462 0.00 0.00 46.39 2.29
3059 5008 6.824553 AGGATACGATGTACTGTAGTGAGTA 58.175 40.000 0.00 0.00 46.39 2.59
3062 5011 7.226325 GGATACGATGTACTGTAGTGAGTACTT 59.774 40.741 11.13 5.85 45.86 2.24
3063 5012 6.179504 ACGATGTACTGTAGTGAGTACTTG 57.820 41.667 11.13 4.88 45.86 3.16
3078 5027 8.867097 AGTGAGTACTTGGTCTGTTCTTTTATA 58.133 33.333 0.00 0.00 31.66 0.98
3080 5029 9.871238 TGAGTACTTGGTCTGTTCTTTTATATC 57.129 33.333 0.00 0.00 0.00 1.63
3084 5033 6.599638 ACTTGGTCTGTTCTTTTATATCCAGC 59.400 38.462 0.00 0.00 0.00 4.85
3117 5249 8.789825 TTGCATGGCATCTTAACATTATTTTT 57.210 26.923 0.00 0.00 38.76 1.94
3118 5250 9.881649 TTGCATGGCATCTTAACATTATTTTTA 57.118 25.926 0.00 0.00 38.76 1.52
3145 5277 9.944663 TCGTTAAGCATCAAATTATATTTCCAC 57.055 29.630 0.00 0.00 0.00 4.02
3157 5289 9.840427 AAATTATATTTCCACGTTCTTCTGTTG 57.160 29.630 0.00 0.00 0.00 3.33
3158 5290 7.972832 TTATATTTCCACGTTCTTCTGTTGT 57.027 32.000 0.00 0.00 0.00 3.32
3165 5297 4.690748 CCACGTTCTTCTGTTGTGATGTAT 59.309 41.667 0.00 0.00 32.39 2.29
3169 5301 8.443160 CACGTTCTTCTGTTGTGATGTATAAAT 58.557 33.333 0.00 0.00 32.39 1.40
3247 5379 9.743057 TTGTAAACACATAGACAAATTTTCCAG 57.257 29.630 0.00 0.00 0.00 3.86
3248 5380 8.356657 TGTAAACACATAGACAAATTTTCCAGG 58.643 33.333 0.00 0.00 0.00 4.45
3249 5381 7.595819 AAACACATAGACAAATTTTCCAGGA 57.404 32.000 0.00 0.00 0.00 3.86
3250 5382 7.781324 AACACATAGACAAATTTTCCAGGAT 57.219 32.000 0.00 0.00 0.00 3.24
3251 5383 8.877864 AACACATAGACAAATTTTCCAGGATA 57.122 30.769 0.00 0.00 0.00 2.59
3252 5384 8.511604 ACACATAGACAAATTTTCCAGGATAG 57.488 34.615 0.00 0.00 0.00 2.08
3253 5385 8.328758 ACACATAGACAAATTTTCCAGGATAGA 58.671 33.333 0.00 0.00 0.00 1.98
3254 5386 9.347240 CACATAGACAAATTTTCCAGGATAGAT 57.653 33.333 0.00 0.00 0.00 1.98
3255 5387 9.347240 ACATAGACAAATTTTCCAGGATAGATG 57.653 33.333 0.00 0.00 0.00 2.90
3256 5388 9.565090 CATAGACAAATTTTCCAGGATAGATGA 57.435 33.333 0.00 0.00 0.00 2.92
3335 5467 7.954666 ATCTCTTTTAAAATCATTTCGGGGA 57.045 32.000 0.09 0.00 0.00 4.81
3336 5468 7.391148 TCTCTTTTAAAATCATTTCGGGGAG 57.609 36.000 0.09 1.26 0.00 4.30
3337 5469 6.946009 TCTCTTTTAAAATCATTTCGGGGAGT 59.054 34.615 0.09 0.00 0.00 3.85
3338 5470 8.104566 TCTCTTTTAAAATCATTTCGGGGAGTA 58.895 33.333 0.09 0.00 0.00 2.59
3339 5471 8.638629 TCTTTTAAAATCATTTCGGGGAGTAA 57.361 30.769 0.09 0.00 0.00 2.24
3340 5472 9.250246 TCTTTTAAAATCATTTCGGGGAGTAAT 57.750 29.630 0.09 0.00 0.00 1.89
3341 5473 9.869757 CTTTTAAAATCATTTCGGGGAGTAATT 57.130 29.630 0.09 0.00 0.00 1.40
3343 5475 9.863845 TTTAAAATCATTTCGGGGAGTAATTTC 57.136 29.630 0.00 0.00 0.00 2.17
3344 5476 7.475137 AAAATCATTTCGGGGAGTAATTTCA 57.525 32.000 0.00 0.00 0.00 2.69
3345 5477 7.660030 AAATCATTTCGGGGAGTAATTTCAT 57.340 32.000 0.00 0.00 0.00 2.57
3346 5478 6.639632 ATCATTTCGGGGAGTAATTTCATG 57.360 37.500 0.00 0.00 0.00 3.07
3347 5479 5.750524 TCATTTCGGGGAGTAATTTCATGA 58.249 37.500 0.00 0.00 0.00 3.07
3348 5480 6.184068 TCATTTCGGGGAGTAATTTCATGAA 58.816 36.000 3.38 3.38 0.00 2.57
3349 5481 6.833416 TCATTTCGGGGAGTAATTTCATGAAT 59.167 34.615 9.40 0.00 0.00 2.57
3350 5482 7.996066 TCATTTCGGGGAGTAATTTCATGAATA 59.004 33.333 9.40 0.00 0.00 1.75
3351 5483 8.796475 CATTTCGGGGAGTAATTTCATGAATAT 58.204 33.333 9.40 3.90 0.00 1.28
3352 5484 8.760980 TTTCGGGGAGTAATTTCATGAATATT 57.239 30.769 9.40 13.38 0.00 1.28
3353 5485 8.760980 TTCGGGGAGTAATTTCATGAATATTT 57.239 30.769 9.40 6.51 0.00 1.40
3354 5486 8.391075 TCGGGGAGTAATTTCATGAATATTTC 57.609 34.615 9.40 9.60 0.00 2.17
3355 5487 8.217799 TCGGGGAGTAATTTCATGAATATTTCT 58.782 33.333 9.40 13.50 0.00 2.52
3356 5488 8.850156 CGGGGAGTAATTTCATGAATATTTCTT 58.150 33.333 9.40 0.00 0.00 2.52
3377 5509 2.558265 GTGAATTGCACACACACACA 57.442 45.000 10.79 0.00 46.91 3.72
3378 5510 2.184448 GTGAATTGCACACACACACAC 58.816 47.619 10.79 0.00 46.91 3.82
3379 5511 1.815003 TGAATTGCACACACACACACA 59.185 42.857 0.00 0.00 0.00 3.72
3380 5512 2.184448 GAATTGCACACACACACACAC 58.816 47.619 0.00 0.00 0.00 3.82
3381 5513 1.172175 ATTGCACACACACACACACA 58.828 45.000 0.00 0.00 0.00 3.72
3382 5514 0.239613 TTGCACACACACACACACAC 59.760 50.000 0.00 0.00 0.00 3.82
3383 5515 0.886490 TGCACACACACACACACACA 60.886 50.000 0.00 0.00 0.00 3.72
3384 5516 0.239613 GCACACACACACACACACAA 59.760 50.000 0.00 0.00 0.00 3.33
3385 5517 1.335415 GCACACACACACACACACAAA 60.335 47.619 0.00 0.00 0.00 2.83
3386 5518 2.670789 GCACACACACACACACACAAAT 60.671 45.455 0.00 0.00 0.00 2.32
3387 5519 3.426829 GCACACACACACACACACAAATA 60.427 43.478 0.00 0.00 0.00 1.40
3388 5520 4.733230 GCACACACACACACACACAAATAT 60.733 41.667 0.00 0.00 0.00 1.28
3389 5521 5.504830 GCACACACACACACACACAAATATA 60.505 40.000 0.00 0.00 0.00 0.86
3390 5522 6.667370 CACACACACACACACACAAATATAT 58.333 36.000 0.00 0.00 0.00 0.86
3391 5523 7.572168 GCACACACACACACACACAAATATATA 60.572 37.037 0.00 0.00 0.00 0.86
3392 5524 8.450180 CACACACACACACACACAAATATATAT 58.550 33.333 0.00 0.00 0.00 0.86
3393 5525 9.660180 ACACACACACACACACAAATATATATA 57.340 29.630 0.00 0.00 0.00 0.86
3448 5580 7.759489 AAACATGAATACCTTGCTTAAGACA 57.241 32.000 6.67 0.81 0.00 3.41
3449 5581 7.944729 AACATGAATACCTTGCTTAAGACAT 57.055 32.000 6.67 0.00 0.00 3.06
3450 5582 9.461312 AAACATGAATACCTTGCTTAAGACATA 57.539 29.630 6.67 0.00 0.00 2.29
3451 5583 8.438676 ACATGAATACCTTGCTTAAGACATAC 57.561 34.615 6.67 0.00 0.00 2.39
3452 5584 7.499232 ACATGAATACCTTGCTTAAGACATACC 59.501 37.037 6.67 0.00 0.00 2.73
3453 5585 6.953101 TGAATACCTTGCTTAAGACATACCA 58.047 36.000 6.67 0.00 0.00 3.25
3454 5586 7.398829 TGAATACCTTGCTTAAGACATACCAA 58.601 34.615 6.67 0.00 0.00 3.67
3455 5587 8.052748 TGAATACCTTGCTTAAGACATACCAAT 58.947 33.333 6.67 0.00 0.00 3.16
3456 5588 9.555727 GAATACCTTGCTTAAGACATACCAATA 57.444 33.333 6.67 0.00 0.00 1.90
3457 5589 9.914834 AATACCTTGCTTAAGACATACCAATAA 57.085 29.630 6.67 0.00 0.00 1.40
3517 5649 9.935682 ATATACATGAGCATTTTTGTAAGAACG 57.064 29.630 0.00 0.00 0.00 3.95
3518 5650 4.917415 ACATGAGCATTTTTGTAAGAACGC 59.083 37.500 0.00 0.00 0.00 4.84
3519 5651 4.560136 TGAGCATTTTTGTAAGAACGCA 57.440 36.364 0.00 0.00 0.00 5.24
3520 5652 5.119931 TGAGCATTTTTGTAAGAACGCAT 57.880 34.783 0.00 0.00 0.00 4.73
3521 5653 4.916831 TGAGCATTTTTGTAAGAACGCATG 59.083 37.500 0.00 0.00 0.00 4.06
3522 5654 4.236935 AGCATTTTTGTAAGAACGCATGG 58.763 39.130 0.00 0.00 0.00 3.66
3523 5655 4.022416 AGCATTTTTGTAAGAACGCATGGA 60.022 37.500 0.00 0.00 0.00 3.41
3524 5656 4.089923 GCATTTTTGTAAGAACGCATGGAC 59.910 41.667 0.00 0.00 0.00 4.02
3525 5657 4.902443 TTTTTGTAAGAACGCATGGACA 57.098 36.364 0.00 0.00 0.00 4.02
3526 5658 5.446143 TTTTTGTAAGAACGCATGGACAT 57.554 34.783 0.00 0.00 0.00 3.06
3527 5659 4.678509 TTTGTAAGAACGCATGGACATC 57.321 40.909 0.00 0.00 0.00 3.06
3528 5660 3.610040 TGTAAGAACGCATGGACATCT 57.390 42.857 0.00 0.00 0.00 2.90
3529 5661 3.937814 TGTAAGAACGCATGGACATCTT 58.062 40.909 0.00 0.00 34.85 2.40
3530 5662 4.323417 TGTAAGAACGCATGGACATCTTT 58.677 39.130 0.00 0.00 32.87 2.52
3531 5663 4.759693 TGTAAGAACGCATGGACATCTTTT 59.240 37.500 0.00 0.00 32.87 2.27
3532 5664 4.853924 AAGAACGCATGGACATCTTTTT 57.146 36.364 0.00 0.00 0.00 1.94
3580 5712 9.566530 TGCAACACATGAATATTTTATGTACAC 57.433 29.630 14.96 8.73 33.57 2.90
3581 5713 9.787532 GCAACACATGAATATTTTATGTACACT 57.212 29.630 14.96 0.00 33.57 3.55
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 1.377202 GGACTCAGGCCGCATTTGA 60.377 57.895 0.00 0.00 0.00 2.69
58 59 3.491581 TCGCTTCCGACTTCTTGAC 57.508 52.632 0.00 0.00 38.82 3.18
198 201 2.107141 CCGATTCCTCTCCGTGCC 59.893 66.667 0.00 0.00 0.00 5.01
201 204 3.528370 CCGCCGATTCCTCTCCGT 61.528 66.667 0.00 0.00 0.00 4.69
203 206 3.541713 AGCCGCCGATTCCTCTCC 61.542 66.667 0.00 0.00 0.00 3.71
204 207 2.279784 CAGCCGCCGATTCCTCTC 60.280 66.667 0.00 0.00 0.00 3.20
205 208 4.537433 GCAGCCGCCGATTCCTCT 62.537 66.667 0.00 0.00 0.00 3.69
250 254 4.176851 GTCGTCTCCGGCGGACTC 62.177 72.222 27.46 19.00 33.95 3.36
269 273 0.251165 CCCCTCCGATCTCCTCTCTC 60.251 65.000 0.00 0.00 0.00 3.20
276 280 1.497161 TCTTTTCCCCCTCCGATCTC 58.503 55.000 0.00 0.00 0.00 2.75
277 281 2.050918 GATCTTTTCCCCCTCCGATCT 58.949 52.381 0.00 0.00 0.00 2.75
287 296 1.453928 CCCAGGCCGATCTTTTCCC 60.454 63.158 0.00 0.00 0.00 3.97
309 318 3.259123 GGCCAATATTTAAGCCCATGAGG 59.741 47.826 0.00 0.00 39.60 3.86
349 608 1.507141 CCAGTCCAACAACGTCAGGC 61.507 60.000 0.00 0.00 0.00 4.85
351 610 1.217882 GACCAGTCCAACAACGTCAG 58.782 55.000 0.00 0.00 0.00 3.51
352 611 3.372795 GACCAGTCCAACAACGTCA 57.627 52.632 0.00 0.00 0.00 4.35
378 642 0.528684 GCGAAATCGGTAGCAGAGCT 60.529 55.000 4.84 0.00 40.34 4.09
381 645 1.143183 GGGCGAAATCGGTAGCAGA 59.857 57.895 4.84 0.00 40.23 4.26
391 655 0.462047 GGACGTGATCTGGGCGAAAT 60.462 55.000 0.00 0.00 0.00 2.17
394 658 3.458163 GGGACGTGATCTGGGCGA 61.458 66.667 0.00 0.00 0.00 5.54
395 659 4.530857 GGGGACGTGATCTGGGCG 62.531 72.222 0.00 0.00 0.00 6.13
396 660 4.176752 GGGGGACGTGATCTGGGC 62.177 72.222 0.00 0.00 0.00 5.36
410 674 4.275508 CCATGAGGCCGATGGGGG 62.276 72.222 23.04 7.69 37.33 5.40
637 901 2.960129 GCGCGACCTAATCCCACG 60.960 66.667 12.10 0.00 0.00 4.94
669 933 3.626596 AGGAGAAGGGGGCTGGGA 61.627 66.667 0.00 0.00 0.00 4.37
674 938 2.770475 GGAGGAGGAGAAGGGGGC 60.770 72.222 0.00 0.00 0.00 5.80
677 941 0.105709 GAGGAGGAGGAGGAGAAGGG 60.106 65.000 0.00 0.00 0.00 3.95
758 1023 0.532573 CCGCTCTGCTCCACTAGAAA 59.467 55.000 0.00 0.00 0.00 2.52
773 1038 1.228583 TATGGATCTCCGCTCCGCT 60.229 57.895 0.00 0.00 39.43 5.52
799 1064 2.202676 GCAAGAGGACTCTCGCGG 60.203 66.667 6.13 0.00 44.47 6.46
800 1065 1.515952 CAGCAAGAGGACTCTCGCG 60.516 63.158 0.00 0.00 44.47 5.87
803 1068 3.093057 TCCTTACAGCAAGAGGACTCTC 58.907 50.000 1.76 0.00 39.39 3.20
804 1069 3.176924 TCCTTACAGCAAGAGGACTCT 57.823 47.619 0.00 0.00 42.75 3.24
808 1073 1.279271 GGCTTCCTTACAGCAAGAGGA 59.721 52.381 0.00 0.00 39.21 3.71
812 1077 1.815003 CTTGGGCTTCCTTACAGCAAG 59.185 52.381 0.00 0.00 39.21 4.01
830 1095 4.737177 GCAGGCCAGGCAGAGCTT 62.737 66.667 15.19 0.00 0.00 3.74
856 1121 3.691118 TGCAGAAATCAGAAAGGAATCGG 59.309 43.478 0.00 0.00 0.00 4.18
894 1168 4.451150 GCGTGGCATCAGGACCGA 62.451 66.667 0.00 0.00 0.00 4.69
907 1181 3.987868 ACTACCATAGAATAATGCGCGTG 59.012 43.478 8.43 0.00 0.00 5.34
918 1192 3.284617 TCGCAGCAGTACTACCATAGAA 58.715 45.455 0.00 0.00 0.00 2.10
921 1195 3.021695 ACTTCGCAGCAGTACTACCATA 58.978 45.455 0.00 0.00 0.00 2.74
922 1196 1.825474 ACTTCGCAGCAGTACTACCAT 59.175 47.619 0.00 0.00 0.00 3.55
927 1201 1.937108 GCTCAACTTCGCAGCAGTACT 60.937 52.381 0.00 0.00 33.06 2.73
930 1204 1.963338 GGCTCAACTTCGCAGCAGT 60.963 57.895 0.00 0.00 34.62 4.40
931 1205 1.303799 ATGGCTCAACTTCGCAGCAG 61.304 55.000 0.00 0.00 34.62 4.24
937 1211 4.470462 CAGAAGAAAATGGCTCAACTTCG 58.530 43.478 0.00 0.00 38.74 3.79
938 1212 4.233005 GCAGAAGAAAATGGCTCAACTTC 58.767 43.478 0.00 0.00 35.47 3.01
941 1216 2.589014 CGCAGAAGAAAATGGCTCAAC 58.411 47.619 0.00 0.00 0.00 3.18
961 1236 2.117779 GGCTAGGCTTTCCTGCAGC 61.118 63.158 8.66 0.00 44.08 5.25
962 1237 0.833287 TAGGCTAGGCTTTCCTGCAG 59.167 55.000 25.37 6.78 44.08 4.41
963 1238 0.833287 CTAGGCTAGGCTTTCCTGCA 59.167 55.000 25.37 3.12 44.08 4.41
964 1239 0.107643 CCTAGGCTAGGCTTTCCTGC 59.892 60.000 26.79 3.32 44.08 4.85
974 1249 0.961019 CTGCTCTCTGCCTAGGCTAG 59.039 60.000 33.07 27.60 42.00 3.42
975 1250 0.468958 CCTGCTCTCTGCCTAGGCTA 60.469 60.000 33.07 20.37 42.00 3.93
979 1254 0.685785 TCACCCTGCTCTCTGCCTAG 60.686 60.000 0.00 0.00 42.00 3.02
1067 1350 2.956333 GTTTGAAGTGCCTAAGGTGGTT 59.044 45.455 0.00 0.00 0.00 3.67
1080 1370 6.488006 ACTGCTATGAACATCAAGTTTGAAGT 59.512 34.615 0.00 0.00 41.51 3.01
1081 1371 6.906659 ACTGCTATGAACATCAAGTTTGAAG 58.093 36.000 0.00 0.00 41.51 3.02
1094 1384 7.752239 TCAAGTACTTACGTAACTGCTATGAAC 59.248 37.037 8.04 0.00 0.00 3.18
1106 1396 9.112725 TCTGCTACAATATCAAGTACTTACGTA 57.887 33.333 8.04 2.29 0.00 3.57
1107 1397 7.914346 GTCTGCTACAATATCAAGTACTTACGT 59.086 37.037 8.04 0.00 0.00 3.57
1108 1398 7.913821 TGTCTGCTACAATATCAAGTACTTACG 59.086 37.037 8.04 0.00 34.29 3.18
1109 1399 9.582431 TTGTCTGCTACAATATCAAGTACTTAC 57.418 33.333 8.04 0.00 43.22 2.34
1110 1400 9.803315 CTTGTCTGCTACAATATCAAGTACTTA 57.197 33.333 8.04 0.00 46.81 2.24
1111 1401 8.531982 TCTTGTCTGCTACAATATCAAGTACTT 58.468 33.333 1.12 1.12 46.81 2.24
1112 1402 8.067751 TCTTGTCTGCTACAATATCAAGTACT 57.932 34.615 5.79 0.00 46.81 2.73
1113 1403 7.976734 ACTCTTGTCTGCTACAATATCAAGTAC 59.023 37.037 5.79 0.00 46.81 2.73
1141 1431 9.290988 ACATACCATGTAACAAAACTGATAACA 57.709 29.630 0.00 0.00 42.78 2.41
1149 1439 9.752961 AGGTTTTAACATACCATGTAACAAAAC 57.247 29.630 17.69 17.69 44.07 2.43
1151 1441 9.751542 CAAGGTTTTAACATACCATGTAACAAA 57.248 29.630 0.00 0.37 44.07 2.83
1152 1442 8.361139 CCAAGGTTTTAACATACCATGTAACAA 58.639 33.333 0.00 0.00 44.07 2.83
1153 1443 7.724506 TCCAAGGTTTTAACATACCATGTAACA 59.275 33.333 0.00 0.00 44.07 2.41
1154 1444 8.113173 TCCAAGGTTTTAACATACCATGTAAC 57.887 34.615 0.00 0.00 44.07 2.50
1194 1601 5.765182 CCATTCAGGCATAGGTTTAACTAGG 59.235 44.000 0.00 0.00 0.00 3.02
1207 1679 1.842562 AGTAGCAGACCATTCAGGCAT 59.157 47.619 0.00 0.00 43.14 4.40
1210 1682 3.616956 TCAAGTAGCAGACCATTCAGG 57.383 47.619 0.00 0.00 45.67 3.86
1284 1756 5.112129 ACGGAGGGAGCAGTTAATTATTT 57.888 39.130 0.00 0.00 0.00 1.40
1287 1759 2.433239 GGACGGAGGGAGCAGTTAATTA 59.567 50.000 0.00 0.00 0.00 1.40
1288 1760 1.209747 GGACGGAGGGAGCAGTTAATT 59.790 52.381 0.00 0.00 0.00 1.40
1291 1763 1.684734 GGGACGGAGGGAGCAGTTA 60.685 63.158 0.00 0.00 0.00 2.24
1292 1764 3.003763 GGGACGGAGGGAGCAGTT 61.004 66.667 0.00 0.00 0.00 3.16
1294 1766 2.124507 TTTTGGGACGGAGGGAGCAG 62.125 60.000 0.00 0.00 0.00 4.24
1295 1767 1.497309 ATTTTGGGACGGAGGGAGCA 61.497 55.000 0.00 0.00 0.00 4.26
1296 1768 0.544697 TATTTTGGGACGGAGGGAGC 59.455 55.000 0.00 0.00 0.00 4.70
1297 1769 2.238898 ACTTATTTTGGGACGGAGGGAG 59.761 50.000 0.00 0.00 0.00 4.30
1298 1770 2.026636 CACTTATTTTGGGACGGAGGGA 60.027 50.000 0.00 0.00 0.00 4.20
1299 1771 2.290705 ACACTTATTTTGGGACGGAGGG 60.291 50.000 0.00 0.00 0.00 4.30
1300 1772 3.007635 GACACTTATTTTGGGACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
1301 1773 3.933332 GAGACACTTATTTTGGGACGGAG 59.067 47.826 0.00 0.00 0.00 4.63
1302 1774 3.325425 TGAGACACTTATTTTGGGACGGA 59.675 43.478 0.00 0.00 0.00 4.69
1303 1775 3.670625 TGAGACACTTATTTTGGGACGG 58.329 45.455 0.00 0.00 0.00 4.79
1304 1776 4.755123 AGTTGAGACACTTATTTTGGGACG 59.245 41.667 0.00 0.00 0.00 4.79
1305 1777 6.635030 AAGTTGAGACACTTATTTTGGGAC 57.365 37.500 0.00 0.00 35.10 4.46
1306 1778 7.996644 ACTAAAGTTGAGACACTTATTTTGGGA 59.003 33.333 0.00 0.00 35.87 4.37
1307 1779 8.166422 ACTAAAGTTGAGACACTTATTTTGGG 57.834 34.615 0.00 0.00 35.87 4.12
1340 1812 9.268268 CCAAAATAAGTGTCTCAACTTAGTACA 57.732 33.333 0.00 0.00 43.86 2.90
1341 1813 8.718734 CCCAAAATAAGTGTCTCAACTTAGTAC 58.281 37.037 3.49 0.00 43.86 2.73
1342 1814 8.653191 TCCCAAAATAAGTGTCTCAACTTAGTA 58.347 33.333 3.49 0.00 43.86 1.82
1343 1815 7.444487 GTCCCAAAATAAGTGTCTCAACTTAGT 59.556 37.037 3.49 0.00 43.86 2.24
1344 1816 7.360101 CGTCCCAAAATAAGTGTCTCAACTTAG 60.360 40.741 3.49 0.00 43.86 2.18
1345 1817 6.425721 CGTCCCAAAATAAGTGTCTCAACTTA 59.574 38.462 0.00 0.00 44.52 2.24
1346 1818 5.238650 CGTCCCAAAATAAGTGTCTCAACTT 59.761 40.000 0.00 0.00 42.89 2.66
1347 1819 4.755123 CGTCCCAAAATAAGTGTCTCAACT 59.245 41.667 0.00 0.00 0.00 3.16
1348 1820 4.083484 CCGTCCCAAAATAAGTGTCTCAAC 60.083 45.833 0.00 0.00 0.00 3.18
1349 1821 4.069304 CCGTCCCAAAATAAGTGTCTCAA 58.931 43.478 0.00 0.00 0.00 3.02
1350 1822 3.325425 TCCGTCCCAAAATAAGTGTCTCA 59.675 43.478 0.00 0.00 0.00 3.27
1351 1823 3.933332 CTCCGTCCCAAAATAAGTGTCTC 59.067 47.826 0.00 0.00 0.00 3.36
1352 1824 3.307480 CCTCCGTCCCAAAATAAGTGTCT 60.307 47.826 0.00 0.00 0.00 3.41
1353 1825 3.007635 CCTCCGTCCCAAAATAAGTGTC 58.992 50.000 0.00 0.00 0.00 3.67
1354 1826 2.640826 TCCTCCGTCCCAAAATAAGTGT 59.359 45.455 0.00 0.00 0.00 3.55
1355 1827 3.343941 TCCTCCGTCCCAAAATAAGTG 57.656 47.619 0.00 0.00 0.00 3.16
1356 1828 3.329814 ACTTCCTCCGTCCCAAAATAAGT 59.670 43.478 0.00 0.00 0.00 2.24
1357 1829 3.951663 ACTTCCTCCGTCCCAAAATAAG 58.048 45.455 0.00 0.00 0.00 1.73
1358 1830 5.703730 ATACTTCCTCCGTCCCAAAATAA 57.296 39.130 0.00 0.00 0.00 1.40
1359 1831 8.370182 GTTATATACTTCCTCCGTCCCAAAATA 58.630 37.037 0.00 0.00 0.00 1.40
1360 1832 5.906772 ATATACTTCCTCCGTCCCAAAAT 57.093 39.130 0.00 0.00 0.00 1.82
1361 1833 6.156602 TGTTATATACTTCCTCCGTCCCAAAA 59.843 38.462 0.00 0.00 0.00 2.44
1362 1834 5.662208 TGTTATATACTTCCTCCGTCCCAAA 59.338 40.000 0.00 0.00 0.00 3.28
1363 1835 5.210430 TGTTATATACTTCCTCCGTCCCAA 58.790 41.667 0.00 0.00 0.00 4.12
1364 1836 4.806892 TGTTATATACTTCCTCCGTCCCA 58.193 43.478 0.00 0.00 0.00 4.37
1365 1837 5.997384 ATGTTATATACTTCCTCCGTCCC 57.003 43.478 0.00 0.00 0.00 4.46
1366 1838 8.027771 CACTTATGTTATATACTTCCTCCGTCC 58.972 40.741 0.00 0.00 0.00 4.79
1367 1839 7.541437 GCACTTATGTTATATACTTCCTCCGTC 59.459 40.741 0.00 0.00 0.00 4.79
1368 1840 7.232941 AGCACTTATGTTATATACTTCCTCCGT 59.767 37.037 0.00 0.00 0.00 4.69
1369 1841 7.603651 AGCACTTATGTTATATACTTCCTCCG 58.396 38.462 0.00 0.00 0.00 4.63
1386 1858 7.559335 TGATGACATCCCTATAAGCACTTAT 57.441 36.000 12.90 7.95 39.02 1.73
1390 1862 5.410746 CACATGATGACATCCCTATAAGCAC 59.589 44.000 12.90 0.00 34.15 4.40
1451 1924 9.401058 CTGATCATTTTCTTATAGGGAGTTGTT 57.599 33.333 0.00 0.00 0.00 2.83
1454 1927 7.995488 CACCTGATCATTTTCTTATAGGGAGTT 59.005 37.037 0.00 0.00 0.00 3.01
1455 1928 7.420680 CCACCTGATCATTTTCTTATAGGGAGT 60.421 40.741 0.00 0.00 0.00 3.85
1459 1966 6.841601 TCCCACCTGATCATTTTCTTATAGG 58.158 40.000 0.00 0.00 0.00 2.57
1461 1968 7.451731 ACTCCCACCTGATCATTTTCTTATA 57.548 36.000 0.00 0.00 0.00 0.98
1490 1997 0.749649 ACTAGAGATGCAGGCTTCCG 59.250 55.000 0.00 0.00 0.00 4.30
1500 2007 7.285172 TCCAGAGAGAAGATTTGACTAGAGATG 59.715 40.741 0.00 0.00 0.00 2.90
1539 2046 3.575399 GCCAAAAGCAACTGGTCAG 57.425 52.632 0.00 0.00 42.97 3.51
1580 2095 5.812127 AGACCAAGAAAAGTTTTTGCATCAC 59.188 36.000 1.64 0.00 0.00 3.06
1590 2105 7.444487 GTCCAACTACATAGACCAAGAAAAGTT 59.556 37.037 0.00 0.00 0.00 2.66
1636 2151 1.134189 CCCCCGTAGAGATTGTTTCCC 60.134 57.143 0.00 0.00 0.00 3.97
1648 2163 3.603671 GAGGTAGCGCCCCCGTAG 61.604 72.222 2.29 0.00 38.26 3.51
1669 2184 1.335872 GGTCTTGCCACCGTTTCAATG 60.336 52.381 0.00 0.00 37.17 2.82
1721 2236 3.799281 TTTGTGGTTTGAAGGAAGCAG 57.201 42.857 0.00 0.00 37.66 4.24
1744 2259 7.575414 TGGTTCTTATTACTGACAAAGCAAA 57.425 32.000 0.00 0.00 0.00 3.68
1748 2263 8.783093 TCATGTTGGTTCTTATTACTGACAAAG 58.217 33.333 0.00 0.00 0.00 2.77
1778 3590 7.977293 ACAAAAGGTTACCACATGACTTAAAAC 59.023 33.333 3.51 0.00 0.00 2.43
1798 3610 3.673746 TTTGAGTGCTGACGACAAAAG 57.326 42.857 0.00 0.00 33.60 2.27
1808 3620 2.034939 TGCATGGAACTTTTGAGTGCTG 59.965 45.455 0.00 0.00 32.67 4.41
1919 3731 0.465097 AATCCCAGATCTTGGCAGCG 60.465 55.000 8.01 0.00 46.32 5.18
1949 3761 5.313712 ACCCCATTATAGACAATTAAGGCG 58.686 41.667 0.00 0.00 0.00 5.52
1964 3779 9.784376 ACAGATATCTAGCTTATAACCCCATTA 57.216 33.333 4.54 0.00 0.00 1.90
1975 3790 6.547510 TCAGCAAGTCACAGATATCTAGCTTA 59.452 38.462 4.54 0.00 0.00 3.09
2106 3921 4.513198 TTACCCTGTTAGTTTTGCATGC 57.487 40.909 11.82 11.82 0.00 4.06
2107 3922 5.348451 GCAATTACCCTGTTAGTTTTGCATG 59.652 40.000 0.00 0.00 36.21 4.06
2108 3923 5.245977 AGCAATTACCCTGTTAGTTTTGCAT 59.754 36.000 7.02 0.00 37.49 3.96
2109 3924 4.586841 AGCAATTACCCTGTTAGTTTTGCA 59.413 37.500 7.02 0.00 37.49 4.08
2289 4143 1.224592 CATAACCCGCTTGGCTCCT 59.775 57.895 0.00 0.00 37.83 3.69
2415 4269 4.120331 CGGACGACCACCCCGTAC 62.120 72.222 4.48 0.00 40.67 3.67
2427 4281 2.741985 TTCATGGCAGCACGGACG 60.742 61.111 0.00 0.00 0.00 4.79
2631 4485 2.120232 CGCGGAACTAACAGCTAGATG 58.880 52.381 6.41 6.41 0.00 2.90
2667 4524 5.711976 CCAAAACATCTCAGGTACAATCCTT 59.288 40.000 0.00 0.00 35.37 3.36
2674 4531 5.552178 AGAGAACCAAAACATCTCAGGTAC 58.448 41.667 4.98 0.00 41.60 3.34
2720 4577 9.883142 TTATTGGCAAATAGAAATAACCAAAGG 57.117 29.630 3.01 0.00 39.02 3.11
2766 4623 4.065088 GGTTTGTCAACAGCTCACTATGA 58.935 43.478 0.00 0.00 34.15 2.15
2768 4625 4.067896 CTGGTTTGTCAACAGCTCACTAT 58.932 43.478 0.00 0.00 34.15 2.12
2769 4626 3.133901 TCTGGTTTGTCAACAGCTCACTA 59.866 43.478 0.00 0.00 34.15 2.74
2774 4631 2.418368 TGTCTGGTTTGTCAACAGCT 57.582 45.000 0.00 0.00 34.15 4.24
2776 4633 3.278574 TCCTTGTCTGGTTTGTCAACAG 58.721 45.455 0.00 0.00 34.15 3.16
2809 4666 6.814954 ACATAAGGATACAATGTGGAGACT 57.185 37.500 0.00 0.00 41.99 3.24
2839 4770 9.268268 TCAAACTACGTTCTTTTAGATGAACAT 57.732 29.630 11.16 0.69 41.67 2.71
2840 4771 8.651391 TCAAACTACGTTCTTTTAGATGAACA 57.349 30.769 11.16 0.00 41.67 3.18
2841 4772 8.975439 TCTCAAACTACGTTCTTTTAGATGAAC 58.025 33.333 0.00 2.82 39.15 3.18
2842 4773 9.706691 ATCTCAAACTACGTTCTTTTAGATGAA 57.293 29.630 0.00 0.00 0.00 2.57
2852 4783 8.293867 GCAGATAGATATCTCAAACTACGTTCT 58.706 37.037 8.95 0.00 40.91 3.01
2853 4784 8.293867 AGCAGATAGATATCTCAAACTACGTTC 58.706 37.037 8.95 0.00 40.91 3.95
2876 4807 4.497291 AACAGGGATATAAAACGGAGCA 57.503 40.909 0.00 0.00 0.00 4.26
2879 4810 6.585416 GGAACTAACAGGGATATAAAACGGA 58.415 40.000 0.00 0.00 0.00 4.69
2880 4811 5.464389 CGGAACTAACAGGGATATAAAACGG 59.536 44.000 0.00 0.00 0.00 4.44
2889 4820 1.568504 TCTGCGGAACTAACAGGGAT 58.431 50.000 0.00 0.00 32.19 3.85
2907 4838 3.069158 CCTTGGAGATGCCCATTTCATTC 59.931 47.826 1.91 0.00 35.87 2.67
2930 4861 4.163078 ACAACCAAAACATCCCATGAACAA 59.837 37.500 0.00 0.00 0.00 2.83
2931 4862 3.708631 ACAACCAAAACATCCCATGAACA 59.291 39.130 0.00 0.00 0.00 3.18
2932 4863 4.039124 AGACAACCAAAACATCCCATGAAC 59.961 41.667 0.00 0.00 0.00 3.18
3014 4963 6.426587 TCCTCCCATATTCTTCTTTTTGGAG 58.573 40.000 0.00 0.00 37.26 3.86
3022 4971 6.019748 ACATCGTATCCTCCCATATTCTTCT 58.980 40.000 0.00 0.00 0.00 2.85
3025 4974 6.378564 CAGTACATCGTATCCTCCCATATTCT 59.621 42.308 0.00 0.00 0.00 2.40
3026 4975 6.153000 ACAGTACATCGTATCCTCCCATATTC 59.847 42.308 0.00 0.00 0.00 1.75
3028 4977 5.580998 ACAGTACATCGTATCCTCCCATAT 58.419 41.667 0.00 0.00 0.00 1.78
3029 4978 4.994282 ACAGTACATCGTATCCTCCCATA 58.006 43.478 0.00 0.00 0.00 2.74
3030 4979 3.845860 ACAGTACATCGTATCCTCCCAT 58.154 45.455 0.00 0.00 0.00 4.00
3031 4980 3.308035 ACAGTACATCGTATCCTCCCA 57.692 47.619 0.00 0.00 0.00 4.37
3032 4981 4.215827 CACTACAGTACATCGTATCCTCCC 59.784 50.000 0.00 0.00 0.00 4.30
3033 4982 5.061853 TCACTACAGTACATCGTATCCTCC 58.938 45.833 0.00 0.00 0.00 4.30
3034 4983 5.759273 ACTCACTACAGTACATCGTATCCTC 59.241 44.000 0.00 0.00 0.00 3.71
3035 4984 5.682659 ACTCACTACAGTACATCGTATCCT 58.317 41.667 0.00 0.00 0.00 3.24
3045 4994 5.472820 ACAGACCAAGTACTCACTACAGTAC 59.527 44.000 0.00 3.04 46.39 2.73
3046 4995 5.628130 ACAGACCAAGTACTCACTACAGTA 58.372 41.667 0.00 0.00 33.48 2.74
3047 4996 4.471548 ACAGACCAAGTACTCACTACAGT 58.528 43.478 0.00 0.00 33.48 3.55
3059 5008 6.599638 GCTGGATATAAAAGAACAGACCAAGT 59.400 38.462 0.00 0.00 0.00 3.16
3062 5011 6.061022 TGCTGGATATAAAAGAACAGACCA 57.939 37.500 0.00 0.00 0.00 4.02
3063 5012 7.573968 ATTGCTGGATATAAAAGAACAGACC 57.426 36.000 0.00 0.00 0.00 3.85
3119 5251 9.944663 GTGGAAATATAATTTGATGCTTAACGA 57.055 29.630 0.00 0.00 0.00 3.85
3120 5252 8.891928 CGTGGAAATATAATTTGATGCTTAACG 58.108 33.333 0.00 0.00 0.00 3.18
3121 5253 9.730420 ACGTGGAAATATAATTTGATGCTTAAC 57.270 29.630 0.00 0.00 0.00 2.01
3123 5255 9.944663 GAACGTGGAAATATAATTTGATGCTTA 57.055 29.630 0.00 0.00 0.00 3.09
3124 5256 8.686334 AGAACGTGGAAATATAATTTGATGCTT 58.314 29.630 0.00 0.00 0.00 3.91
3126 5258 8.856490 AAGAACGTGGAAATATAATTTGATGC 57.144 30.769 0.00 0.00 0.00 3.91
3129 5261 9.226606 ACAGAAGAACGTGGAAATATAATTTGA 57.773 29.630 0.00 0.00 0.00 2.69
3130 5262 9.840427 AACAGAAGAACGTGGAAATATAATTTG 57.160 29.630 0.00 0.00 0.00 2.32
3131 5263 9.840427 CAACAGAAGAACGTGGAAATATAATTT 57.160 29.630 0.00 0.00 0.00 1.82
3132 5264 9.010029 ACAACAGAAGAACGTGGAAATATAATT 57.990 29.630 0.00 0.00 0.00 1.40
3133 5265 8.450964 CACAACAGAAGAACGTGGAAATATAAT 58.549 33.333 0.00 0.00 0.00 1.28
3134 5266 7.658167 TCACAACAGAAGAACGTGGAAATATAA 59.342 33.333 0.00 0.00 0.00 0.98
3135 5267 7.156000 TCACAACAGAAGAACGTGGAAATATA 58.844 34.615 0.00 0.00 0.00 0.86
3145 5277 8.443160 ACATTTATACATCACAACAGAAGAACG 58.557 33.333 0.00 0.00 0.00 3.95
3221 5353 9.743057 CTGGAAAATTTGTCTATGTGTTTACAA 57.257 29.630 0.00 0.00 40.84 2.41
3222 5354 8.356657 CCTGGAAAATTTGTCTATGTGTTTACA 58.643 33.333 0.00 0.00 41.89 2.41
3223 5355 8.573035 TCCTGGAAAATTTGTCTATGTGTTTAC 58.427 33.333 0.00 0.00 0.00 2.01
3224 5356 8.698973 TCCTGGAAAATTTGTCTATGTGTTTA 57.301 30.769 0.00 0.00 0.00 2.01
3225 5357 7.595819 TCCTGGAAAATTTGTCTATGTGTTT 57.404 32.000 0.00 0.00 0.00 2.83
3226 5358 7.781324 ATCCTGGAAAATTTGTCTATGTGTT 57.219 32.000 0.00 0.00 0.00 3.32
3227 5359 8.328758 TCTATCCTGGAAAATTTGTCTATGTGT 58.671 33.333 0.00 0.00 0.00 3.72
3228 5360 8.737168 TCTATCCTGGAAAATTTGTCTATGTG 57.263 34.615 0.00 0.00 0.00 3.21
3229 5361 9.347240 CATCTATCCTGGAAAATTTGTCTATGT 57.653 33.333 0.00 0.00 0.00 2.29
3230 5362 9.565090 TCATCTATCCTGGAAAATTTGTCTATG 57.435 33.333 0.00 0.00 0.00 2.23
3309 5441 9.640952 TCCCCGAAATGATTTTAAAAGAGATAT 57.359 29.630 6.79 0.00 0.00 1.63
3310 5442 9.120538 CTCCCCGAAATGATTTTAAAAGAGATA 57.879 33.333 6.79 0.00 0.00 1.98
3311 5443 7.615757 ACTCCCCGAAATGATTTTAAAAGAGAT 59.384 33.333 6.79 0.00 0.00 2.75
3312 5444 6.946009 ACTCCCCGAAATGATTTTAAAAGAGA 59.054 34.615 6.79 0.00 0.00 3.10
3313 5445 7.158099 ACTCCCCGAAATGATTTTAAAAGAG 57.842 36.000 6.79 6.00 0.00 2.85
3314 5446 8.638629 TTACTCCCCGAAATGATTTTAAAAGA 57.361 30.769 6.79 0.00 0.00 2.52
3315 5447 9.869757 AATTACTCCCCGAAATGATTTTAAAAG 57.130 29.630 6.79 0.00 0.00 2.27
3317 5449 9.863845 GAAATTACTCCCCGAAATGATTTTAAA 57.136 29.630 0.00 0.00 0.00 1.52
3318 5450 9.026121 TGAAATTACTCCCCGAAATGATTTTAA 57.974 29.630 0.00 0.00 0.00 1.52
3319 5451 8.582657 TGAAATTACTCCCCGAAATGATTTTA 57.417 30.769 0.00 0.00 0.00 1.52
3320 5452 7.475137 TGAAATTACTCCCCGAAATGATTTT 57.525 32.000 0.00 0.00 0.00 1.82
3321 5453 7.341769 TCATGAAATTACTCCCCGAAATGATTT 59.658 33.333 0.00 0.00 0.00 2.17
3322 5454 6.833416 TCATGAAATTACTCCCCGAAATGATT 59.167 34.615 0.00 0.00 0.00 2.57
3323 5455 6.364701 TCATGAAATTACTCCCCGAAATGAT 58.635 36.000 0.00 0.00 0.00 2.45
3324 5456 5.750524 TCATGAAATTACTCCCCGAAATGA 58.249 37.500 0.00 0.00 0.00 2.57
3325 5457 6.449635 TTCATGAAATTACTCCCCGAAATG 57.550 37.500 5.45 0.00 0.00 2.32
3326 5458 8.940397 ATATTCATGAAATTACTCCCCGAAAT 57.060 30.769 13.09 0.00 0.00 2.17
3327 5459 8.760980 AATATTCATGAAATTACTCCCCGAAA 57.239 30.769 13.09 0.00 0.00 3.46
3328 5460 8.760980 AAATATTCATGAAATTACTCCCCGAA 57.239 30.769 13.09 0.00 0.00 4.30
3329 5461 8.217799 AGAAATATTCATGAAATTACTCCCCGA 58.782 33.333 13.09 0.00 0.00 5.14
3330 5462 8.396272 AGAAATATTCATGAAATTACTCCCCG 57.604 34.615 13.09 0.00 0.00 5.73
3343 5475 9.791820 TGTGCAATTCACTAAGAAATATTCATG 57.208 29.630 0.00 0.00 45.81 3.07
3344 5476 9.793252 GTGTGCAATTCACTAAGAAATATTCAT 57.207 29.630 0.00 0.00 45.81 2.57
3345 5477 8.791675 TGTGTGCAATTCACTAAGAAATATTCA 58.208 29.630 7.38 0.00 45.81 2.57
3346 5478 9.065871 GTGTGTGCAATTCACTAAGAAATATTC 57.934 33.333 7.38 0.00 45.81 1.75
3347 5479 8.575589 TGTGTGTGCAATTCACTAAGAAATATT 58.424 29.630 14.91 0.00 45.81 1.28
3348 5480 8.023128 GTGTGTGTGCAATTCACTAAGAAATAT 58.977 33.333 14.91 0.00 45.81 1.28
3349 5481 7.012799 TGTGTGTGTGCAATTCACTAAGAAATA 59.987 33.333 14.91 0.00 45.81 1.40
3350 5482 6.183360 TGTGTGTGTGCAATTCACTAAGAAAT 60.183 34.615 14.91 0.00 45.81 2.17
3351 5483 5.124617 TGTGTGTGTGCAATTCACTAAGAAA 59.875 36.000 14.91 0.00 45.81 2.52
3352 5484 4.637977 TGTGTGTGTGCAATTCACTAAGAA 59.362 37.500 14.91 0.00 45.81 2.52
3353 5485 4.035091 GTGTGTGTGTGCAATTCACTAAGA 59.965 41.667 14.91 0.00 45.81 2.10
3354 5486 4.201901 TGTGTGTGTGTGCAATTCACTAAG 60.202 41.667 14.91 0.00 45.81 2.18
3355 5487 3.691609 TGTGTGTGTGTGCAATTCACTAA 59.308 39.130 14.91 4.47 45.81 2.24
3356 5488 3.064682 GTGTGTGTGTGTGCAATTCACTA 59.935 43.478 14.91 5.29 45.81 2.74
3357 5489 2.090760 TGTGTGTGTGTGCAATTCACT 58.909 42.857 14.91 0.00 45.81 3.41
3358 5490 2.184448 GTGTGTGTGTGTGCAATTCAC 58.816 47.619 9.32 9.32 45.82 3.18
3359 5491 1.815003 TGTGTGTGTGTGTGCAATTCA 59.185 42.857 0.00 0.00 0.00 2.57
3360 5492 2.184448 GTGTGTGTGTGTGTGCAATTC 58.816 47.619 0.00 0.00 0.00 2.17
3361 5493 1.543358 TGTGTGTGTGTGTGTGCAATT 59.457 42.857 0.00 0.00 0.00 2.32
3362 5494 1.135431 GTGTGTGTGTGTGTGTGCAAT 60.135 47.619 0.00 0.00 0.00 3.56
3363 5495 0.239613 GTGTGTGTGTGTGTGTGCAA 59.760 50.000 0.00 0.00 0.00 4.08
3364 5496 0.886490 TGTGTGTGTGTGTGTGTGCA 60.886 50.000 0.00 0.00 0.00 4.57
3365 5497 0.239613 TTGTGTGTGTGTGTGTGTGC 59.760 50.000 0.00 0.00 0.00 4.57
3366 5498 2.695613 TTTGTGTGTGTGTGTGTGTG 57.304 45.000 0.00 0.00 0.00 3.82
3367 5499 6.875948 ATATATTTGTGTGTGTGTGTGTGT 57.124 33.333 0.00 0.00 0.00 3.72
3422 5554 8.637986 TGTCTTAAGCAAGGTATTCATGTTTTT 58.362 29.630 0.00 0.00 32.22 1.94
3423 5555 8.177119 TGTCTTAAGCAAGGTATTCATGTTTT 57.823 30.769 0.00 0.00 32.22 2.43
3424 5556 7.759489 TGTCTTAAGCAAGGTATTCATGTTT 57.241 32.000 0.00 0.00 32.22 2.83
3425 5557 7.944729 ATGTCTTAAGCAAGGTATTCATGTT 57.055 32.000 0.00 0.00 32.22 2.71
3426 5558 7.499232 GGTATGTCTTAAGCAAGGTATTCATGT 59.501 37.037 0.00 0.00 32.22 3.21
3427 5559 7.498900 TGGTATGTCTTAAGCAAGGTATTCATG 59.501 37.037 0.00 0.00 32.22 3.07
3428 5560 7.573710 TGGTATGTCTTAAGCAAGGTATTCAT 58.426 34.615 0.00 0.00 32.22 2.57
3429 5561 6.953101 TGGTATGTCTTAAGCAAGGTATTCA 58.047 36.000 0.00 0.00 32.22 2.57
3430 5562 7.859325 TTGGTATGTCTTAAGCAAGGTATTC 57.141 36.000 0.00 0.00 32.22 1.75
3431 5563 9.914834 TTATTGGTATGTCTTAAGCAAGGTATT 57.085 29.630 0.00 0.00 36.62 1.89
3491 5623 9.935682 CGTTCTTACAAAAATGCTCATGTATAT 57.064 29.630 0.00 0.00 0.00 0.86
3492 5624 7.908082 GCGTTCTTACAAAAATGCTCATGTATA 59.092 33.333 0.00 0.00 35.11 1.47
3493 5625 6.747280 GCGTTCTTACAAAAATGCTCATGTAT 59.253 34.615 0.00 0.00 35.11 2.29
3494 5626 6.083630 GCGTTCTTACAAAAATGCTCATGTA 58.916 36.000 0.00 0.00 35.11 2.29
3495 5627 4.917415 GCGTTCTTACAAAAATGCTCATGT 59.083 37.500 0.00 0.00 35.11 3.21
3496 5628 4.916831 TGCGTTCTTACAAAAATGCTCATG 59.083 37.500 0.00 0.00 38.07 3.07
3497 5629 5.119931 TGCGTTCTTACAAAAATGCTCAT 57.880 34.783 0.00 0.00 38.07 2.90
3498 5630 4.560136 TGCGTTCTTACAAAAATGCTCA 57.440 36.364 0.00 0.00 38.07 4.26
3499 5631 4.324402 CCATGCGTTCTTACAAAAATGCTC 59.676 41.667 0.00 0.00 38.07 4.26
3500 5632 4.022416 TCCATGCGTTCTTACAAAAATGCT 60.022 37.500 0.00 0.00 38.07 3.79
3501 5633 4.089923 GTCCATGCGTTCTTACAAAAATGC 59.910 41.667 0.00 0.00 37.79 3.56
3502 5634 5.218885 TGTCCATGCGTTCTTACAAAAATG 58.781 37.500 0.00 0.00 0.00 2.32
3503 5635 5.446143 TGTCCATGCGTTCTTACAAAAAT 57.554 34.783 0.00 0.00 0.00 1.82
3504 5636 4.902443 TGTCCATGCGTTCTTACAAAAA 57.098 36.364 0.00 0.00 0.00 1.94
3505 5637 4.759693 AGATGTCCATGCGTTCTTACAAAA 59.240 37.500 0.00 0.00 0.00 2.44
3506 5638 4.323417 AGATGTCCATGCGTTCTTACAAA 58.677 39.130 0.00 0.00 0.00 2.83
3507 5639 3.937814 AGATGTCCATGCGTTCTTACAA 58.062 40.909 0.00 0.00 0.00 2.41
3508 5640 3.610040 AGATGTCCATGCGTTCTTACA 57.390 42.857 0.00 0.00 0.00 2.41
3509 5641 4.946784 AAAGATGTCCATGCGTTCTTAC 57.053 40.909 0.00 0.00 0.00 2.34
3510 5642 5.957842 AAAAAGATGTCCATGCGTTCTTA 57.042 34.783 0.00 0.00 0.00 2.10
3511 5643 4.853924 AAAAAGATGTCCATGCGTTCTT 57.146 36.364 0.00 0.00 0.00 2.52
3554 5686 9.566530 GTGTACATAAAATATTCATGTGTTGCA 57.433 29.630 18.92 11.54 34.78 4.08
3555 5687 9.787532 AGTGTACATAAAATATTCATGTGTTGC 57.212 29.630 18.92 9.92 34.78 4.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.