Multiple sequence alignment - TraesCS2D01G545100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G545100 chr2D 100.000 3584 0 0 1 3584 621949558 621945975 0.000000e+00 6619.0
1 TraesCS2D01G545100 chr2D 71.840 799 172 42 1539 2306 460365298 460366074 2.840000e-41 180.0
2 TraesCS2D01G545100 chr2B 91.274 1570 77 22 1186 2718 763850528 763852074 0.000000e+00 2085.0
3 TraesCS2D01G545100 chr2B 88.493 365 21 15 526 875 763849928 763850286 4.280000e-114 422.0
4 TraesCS2D01G545100 chr2B 90.148 203 14 2 1 202 763847029 763847226 3.550000e-65 259.0
5 TraesCS2D01G545100 chr2B 72.055 798 172 40 1539 2306 541632442 541633218 1.310000e-44 191.0
6 TraesCS2D01G545100 chr2A 89.281 1670 91 34 1028 2653 753655947 753657572 0.000000e+00 2012.0
7 TraesCS2D01G545100 chr2A 86.139 606 58 12 2062 2652 753671691 753672285 6.530000e-177 630.0
8 TraesCS2D01G545100 chr2A 85.950 363 20 15 534 880 753655464 753655811 3.400000e-95 359.0
9 TraesCS2D01G545100 chr2A 87.342 237 23 4 229 460 526074242 526074008 7.630000e-67 265.0
10 TraesCS2D01G545100 chr2A 72.841 718 148 37 1607 2293 603375471 603376172 6.070000e-48 202.0
11 TraesCS2D01G545100 chr2A 98.148 54 1 0 879 932 753655838 753655891 1.060000e-15 95.3
12 TraesCS2D01G545100 chr3A 87.256 667 79 6 2907 3568 584027972 584028637 0.000000e+00 756.0
13 TraesCS2D01G545100 chr3A 86.809 235 25 2 231 460 648520282 648520515 1.280000e-64 257.0
14 TraesCS2D01G545100 chrUn 87.275 668 74 9 2904 3566 223002379 223001718 0.000000e+00 752.0
15 TraesCS2D01G545100 chr7D 87.253 659 78 6 2909 3562 80797957 80797300 0.000000e+00 747.0
16 TraesCS2D01G545100 chr7D 86.826 668 80 8 2908 3569 244555917 244555252 0.000000e+00 739.0
17 TraesCS2D01G545100 chr7D 87.309 654 72 9 2908 3557 91749068 91748422 0.000000e+00 737.0
18 TraesCS2D01G545100 chr3D 86.608 687 75 13 2907 3584 584115513 584114835 0.000000e+00 743.0
19 TraesCS2D01G545100 chr3D 86.976 668 75 9 2904 3566 29528960 29528300 0.000000e+00 741.0
20 TraesCS2D01G545100 chr3D 86.826 668 76 9 2904 3566 29494031 29493371 0.000000e+00 736.0
21 TraesCS2D01G545100 chr3D 86.864 236 26 2 229 460 107043797 107043563 3.550000e-65 259.0
22 TraesCS2D01G545100 chr3D 86.809 235 26 2 230 460 295392199 295392432 1.280000e-64 257.0
23 TraesCS2D01G545100 chr1A 87.635 647 71 9 2908 3550 592322838 592323479 0.000000e+00 743.0
24 TraesCS2D01G545100 chr1A 86.667 90 11 1 2726 2815 293714901 293714989 8.190000e-17 99.0
25 TraesCS2D01G545100 chr6A 86.920 237 25 2 229 460 76520677 76520912 9.870000e-66 261.0
26 TraesCS2D01G545100 chr6D 86.864 236 26 2 229 460 388990882 388990648 3.550000e-65 259.0
27 TraesCS2D01G545100 chr6D 86.441 236 27 2 229 460 26353979 26354213 1.650000e-63 254.0
28 TraesCS2D01G545100 chr4B 86.441 236 26 3 230 460 139543889 139544123 1.650000e-63 254.0
29 TraesCS2D01G545100 chr4A 86.441 236 27 2 229 460 622287942 622287708 1.650000e-63 254.0
30 TraesCS2D01G545100 chr7B 89.130 92 9 1 2730 2821 547943917 547943827 2.920000e-21 113.0
31 TraesCS2D01G545100 chr7B 86.022 93 10 3 2729 2821 637751981 637751892 2.950000e-16 97.1
32 TraesCS2D01G545100 chr5D 89.286 84 8 1 2735 2818 438103746 438103664 1.760000e-18 104.0
33 TraesCS2D01G545100 chr1D 83.478 115 14 4 2726 2837 226452232 226452344 6.330000e-18 102.0
34 TraesCS2D01G545100 chr5A 88.312 77 8 1 2742 2818 552952356 552952281 1.370000e-14 91.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G545100 chr2D 621945975 621949558 3583 True 6619.0 6619 100.000000 1 3584 1 chr2D.!!$R1 3583
1 TraesCS2D01G545100 chr2B 763847029 763852074 5045 False 922.0 2085 89.971667 1 2718 3 chr2B.!!$F2 2717
2 TraesCS2D01G545100 chr2A 753655464 753657572 2108 False 822.1 2012 91.126333 534 2653 3 chr2A.!!$F3 2119
3 TraesCS2D01G545100 chr2A 753671691 753672285 594 False 630.0 630 86.139000 2062 2652 1 chr2A.!!$F2 590
4 TraesCS2D01G545100 chr2A 603375471 603376172 701 False 202.0 202 72.841000 1607 2293 1 chr2A.!!$F1 686
5 TraesCS2D01G545100 chr3A 584027972 584028637 665 False 756.0 756 87.256000 2907 3568 1 chr3A.!!$F1 661
6 TraesCS2D01G545100 chrUn 223001718 223002379 661 True 752.0 752 87.275000 2904 3566 1 chrUn.!!$R1 662
7 TraesCS2D01G545100 chr7D 80797300 80797957 657 True 747.0 747 87.253000 2909 3562 1 chr7D.!!$R1 653
8 TraesCS2D01G545100 chr7D 244555252 244555917 665 True 739.0 739 86.826000 2908 3569 1 chr7D.!!$R3 661
9 TraesCS2D01G545100 chr7D 91748422 91749068 646 True 737.0 737 87.309000 2908 3557 1 chr7D.!!$R2 649
10 TraesCS2D01G545100 chr3D 584114835 584115513 678 True 743.0 743 86.608000 2907 3584 1 chr3D.!!$R4 677
11 TraesCS2D01G545100 chr3D 29528300 29528960 660 True 741.0 741 86.976000 2904 3566 1 chr3D.!!$R2 662
12 TraesCS2D01G545100 chr3D 29493371 29494031 660 True 736.0 736 86.826000 2904 3566 1 chr3D.!!$R1 662
13 TraesCS2D01G545100 chr1A 592322838 592323479 641 False 743.0 743 87.635000 2908 3550 1 chr1A.!!$F2 642

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
678 3083 0.249073 CGTGAGACCACCATCGGATC 60.249 60.0 0.0 0.0 40.12 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2583 5122 0.033504 TTCTTGCTGTCCGTCTCACC 59.966 55.0 0.0 0.0 0.0 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 35 1.344438 TCATGTCGACAAGAGCAAGGT 59.656 47.619 24.13 0.00 0.00 3.50
51 53 5.308825 CAAGGTAATGAGAACAGGTGAACT 58.691 41.667 0.00 0.00 0.00 3.01
65 67 2.349817 GGTGAACTGAACACAAGCATCG 60.350 50.000 0.00 0.00 39.65 3.84
78 80 0.826715 AGCATCGTCATGTACCTGCT 59.173 50.000 8.92 8.92 38.26 4.24
82 84 2.941453 TCGTCATGTACCTGCTCTTC 57.059 50.000 0.00 0.00 0.00 2.87
88 90 1.342074 TGTACCTGCTCTTCTGCTGT 58.658 50.000 0.00 0.00 0.00 4.40
90 92 2.289072 TGTACCTGCTCTTCTGCTGTTC 60.289 50.000 0.00 0.00 0.00 3.18
103 105 2.481952 CTGCTGTTCTTGTGCTTAGACC 59.518 50.000 0.00 0.00 0.00 3.85
109 111 3.678056 TCTTGTGCTTAGACCGATTGT 57.322 42.857 0.00 0.00 0.00 2.71
153 155 1.377725 CTGCCGTCATTGCCTTCCT 60.378 57.895 0.00 0.00 0.00 3.36
213 215 9.950680 AAAACTATTTGACTAAACTGACACATG 57.049 29.630 0.00 0.00 0.00 3.21
215 217 6.710295 ACTATTTGACTAAACTGACACATGCA 59.290 34.615 0.00 0.00 0.00 3.96
217 219 5.826601 TTGACTAAACTGACACATGCAAA 57.173 34.783 0.00 0.00 0.00 3.68
218 220 6.389830 TTGACTAAACTGACACATGCAAAT 57.610 33.333 0.00 0.00 0.00 2.32
221 223 6.149308 TGACTAAACTGACACATGCAAATAGG 59.851 38.462 0.00 0.00 0.00 2.57
233 235 2.739913 TGCAAATAGGCAACACGTACTC 59.260 45.455 0.00 0.00 41.65 2.59
234 236 2.095372 GCAAATAGGCAACACGTACTCC 59.905 50.000 0.00 0.00 41.41 3.85
235 237 2.676342 CAAATAGGCAACACGTACTCCC 59.324 50.000 0.00 0.00 41.41 4.30
236 238 1.861982 ATAGGCAACACGTACTCCCT 58.138 50.000 0.00 0.00 41.41 4.20
237 239 1.180029 TAGGCAACACGTACTCCCTC 58.820 55.000 0.00 0.00 41.41 4.30
238 240 1.079336 GGCAACACGTACTCCCTCC 60.079 63.158 0.00 0.00 0.00 4.30
239 241 1.669440 GCAACACGTACTCCCTCCA 59.331 57.895 0.00 0.00 0.00 3.86
240 242 0.249398 GCAACACGTACTCCCTCCAT 59.751 55.000 0.00 0.00 0.00 3.41
241 243 1.338769 GCAACACGTACTCCCTCCATT 60.339 52.381 0.00 0.00 0.00 3.16
242 244 2.874457 GCAACACGTACTCCCTCCATTT 60.874 50.000 0.00 0.00 0.00 2.32
243 245 3.000727 CAACACGTACTCCCTCCATTTC 58.999 50.000 0.00 0.00 0.00 2.17
244 246 2.537143 ACACGTACTCCCTCCATTTCT 58.463 47.619 0.00 0.00 0.00 2.52
245 247 2.904434 ACACGTACTCCCTCCATTTCTT 59.096 45.455 0.00 0.00 0.00 2.52
246 248 3.326880 ACACGTACTCCCTCCATTTCTTT 59.673 43.478 0.00 0.00 0.00 2.52
248 250 3.838903 ACGTACTCCCTCCATTTCTTTCT 59.161 43.478 0.00 0.00 0.00 2.52
249 251 5.021458 ACGTACTCCCTCCATTTCTTTCTA 58.979 41.667 0.00 0.00 0.00 2.10
250 252 5.105432 ACGTACTCCCTCCATTTCTTTCTAC 60.105 44.000 0.00 0.00 0.00 2.59
251 253 5.127356 CGTACTCCCTCCATTTCTTTCTACT 59.873 44.000 0.00 0.00 0.00 2.57
252 254 5.685520 ACTCCCTCCATTTCTTTCTACTC 57.314 43.478 0.00 0.00 0.00 2.59
253 255 4.471747 ACTCCCTCCATTTCTTTCTACTCC 59.528 45.833 0.00 0.00 0.00 3.85
254 256 3.451178 TCCCTCCATTTCTTTCTACTCCG 59.549 47.826 0.00 0.00 0.00 4.63
255 257 3.198872 CCTCCATTTCTTTCTACTCCGC 58.801 50.000 0.00 0.00 0.00 5.54
256 258 2.860735 CTCCATTTCTTTCTACTCCGCG 59.139 50.000 0.00 0.00 0.00 6.46
258 260 3.444742 TCCATTTCTTTCTACTCCGCGTA 59.555 43.478 4.92 0.00 0.00 4.42
259 261 4.098960 TCCATTTCTTTCTACTCCGCGTAT 59.901 41.667 4.92 0.00 0.00 3.06
260 262 5.300034 TCCATTTCTTTCTACTCCGCGTATA 59.700 40.000 4.92 0.00 0.00 1.47
261 263 5.981315 CCATTTCTTTCTACTCCGCGTATAA 59.019 40.000 4.92 0.00 0.00 0.98
262 264 6.144080 CCATTTCTTTCTACTCCGCGTATAAG 59.856 42.308 4.92 0.00 0.00 1.73
263 265 6.441093 TTTCTTTCTACTCCGCGTATAAGA 57.559 37.500 4.92 0.00 31.90 2.10
264 266 6.630444 TTCTTTCTACTCCGCGTATAAGAT 57.370 37.500 4.92 0.00 32.94 2.40
267 269 7.486647 TCTTTCTACTCCGCGTATAAGATTTT 58.513 34.615 4.92 0.00 30.27 1.82
268 270 7.434307 TCTTTCTACTCCGCGTATAAGATTTTG 59.566 37.037 4.92 0.00 30.27 2.44
269 271 6.140303 TCTACTCCGCGTATAAGATTTTGT 57.860 37.500 4.92 0.00 0.00 2.83
270 272 6.567050 TCTACTCCGCGTATAAGATTTTGTT 58.433 36.000 4.92 0.00 0.00 2.83
271 273 5.464965 ACTCCGCGTATAAGATTTTGTTG 57.535 39.130 4.92 0.00 0.00 3.33
272 274 5.172934 ACTCCGCGTATAAGATTTTGTTGA 58.827 37.500 4.92 0.00 0.00 3.18
273 275 5.640357 ACTCCGCGTATAAGATTTTGTTGAA 59.360 36.000 4.92 0.00 0.00 2.69
274 276 6.102006 TCCGCGTATAAGATTTTGTTGAAG 57.898 37.500 4.92 0.00 0.00 3.02
275 277 5.640357 TCCGCGTATAAGATTTTGTTGAAGT 59.360 36.000 4.92 0.00 0.00 3.01
276 278 5.957796 CCGCGTATAAGATTTTGTTGAAGTC 59.042 40.000 4.92 0.00 0.00 3.01
277 279 6.401688 CCGCGTATAAGATTTTGTTGAAGTCA 60.402 38.462 4.92 0.00 0.00 3.41
278 280 7.012943 CGCGTATAAGATTTTGTTGAAGTCAA 58.987 34.615 0.00 0.00 0.00 3.18
279 281 7.532546 CGCGTATAAGATTTTGTTGAAGTCAAA 59.467 33.333 0.00 0.00 37.63 2.69
280 282 8.627428 GCGTATAAGATTTTGTTGAAGTCAAAC 58.373 33.333 0.00 0.00 37.63 2.93
281 283 9.658475 CGTATAAGATTTTGTTGAAGTCAAACA 57.342 29.630 0.00 0.00 37.63 2.83
368 383 8.415192 GAAAATAAATTTCATGCTGCATCTGA 57.585 30.769 13.10 7.03 45.58 3.27
369 384 8.958119 AAAATAAATTTCATGCTGCATCTGAT 57.042 26.923 13.10 3.87 0.00 2.90
376 391 9.639601 AATTTCATGCTGCATCTGATAATATTG 57.360 29.630 13.10 0.00 0.00 1.90
378 393 7.373778 TCATGCTGCATCTGATAATATTGAC 57.626 36.000 13.10 0.00 0.00 3.18
379 394 7.166167 TCATGCTGCATCTGATAATATTGACT 58.834 34.615 13.10 0.00 0.00 3.41
380 395 7.664318 TCATGCTGCATCTGATAATATTGACTT 59.336 33.333 13.10 0.00 0.00 3.01
381 396 7.430992 TGCTGCATCTGATAATATTGACTTC 57.569 36.000 0.00 0.00 0.00 3.01
383 398 7.664318 TGCTGCATCTGATAATATTGACTTCAT 59.336 33.333 0.00 0.00 0.00 2.57
384 399 9.159364 GCTGCATCTGATAATATTGACTTCATA 57.841 33.333 0.00 0.00 0.00 2.15
390 2794 9.927668 TCTGATAATATTGACTTCATATTGCGA 57.072 29.630 0.00 0.00 0.00 5.10
394 2798 9.778993 ATAATATTGACTTCATATTGCGAATGC 57.221 29.630 0.00 0.00 43.20 3.56
399 2803 5.104562 ACTTCATATTGCGAATGCTGATG 57.895 39.130 0.00 0.00 43.34 3.07
437 2841 7.158099 AGTTAGCCAAACTTTATAAAGCTGG 57.842 36.000 27.64 27.64 46.61 4.85
438 2842 6.946009 AGTTAGCCAAACTTTATAAAGCTGGA 59.054 34.615 32.15 19.37 46.61 3.86
439 2843 5.644977 AGCCAAACTTTATAAAGCTGGAC 57.355 39.130 32.15 25.63 41.43 4.02
440 2844 5.325239 AGCCAAACTTTATAAAGCTGGACT 58.675 37.500 32.15 26.70 41.43 3.85
441 2845 5.416013 AGCCAAACTTTATAAAGCTGGACTC 59.584 40.000 32.15 21.67 41.43 3.36
442 2846 5.416013 GCCAAACTTTATAAAGCTGGACTCT 59.584 40.000 32.15 11.24 41.43 3.24
443 2847 6.623767 GCCAAACTTTATAAAGCTGGACTCTG 60.624 42.308 32.15 15.33 41.43 3.35
444 2848 6.655003 CCAAACTTTATAAAGCTGGACTCTGA 59.345 38.462 27.84 0.00 41.43 3.27
445 2849 7.361286 CCAAACTTTATAAAGCTGGACTCTGAC 60.361 40.741 27.84 0.00 41.43 3.51
446 2850 5.735766 ACTTTATAAAGCTGGACTCTGACC 58.264 41.667 22.45 0.00 39.63 4.02
447 2851 5.248477 ACTTTATAAAGCTGGACTCTGACCA 59.752 40.000 22.45 0.00 39.63 4.02
448 2852 5.755409 TTATAAAGCTGGACTCTGACCAA 57.245 39.130 0.00 0.00 36.95 3.67
450 2854 3.515602 AAAGCTGGACTCTGACCAAAT 57.484 42.857 0.00 0.00 36.95 2.32
451 2855 3.515602 AAGCTGGACTCTGACCAAATT 57.484 42.857 0.00 0.00 36.95 1.82
452 2856 3.515602 AGCTGGACTCTGACCAAATTT 57.484 42.857 0.00 0.00 36.95 1.82
453 2857 3.837355 AGCTGGACTCTGACCAAATTTT 58.163 40.909 0.00 0.00 36.95 1.82
455 2859 5.385198 AGCTGGACTCTGACCAAATTTTAA 58.615 37.500 0.00 0.00 36.95 1.52
457 2861 7.175104 AGCTGGACTCTGACCAAATTTTAATA 58.825 34.615 0.00 0.00 36.95 0.98
458 2862 7.836183 AGCTGGACTCTGACCAAATTTTAATAT 59.164 33.333 0.00 0.00 36.95 1.28
460 2864 9.177608 CTGGACTCTGACCAAATTTTAATATGA 57.822 33.333 0.00 0.00 36.95 2.15
494 2898 7.674471 AATTTTACAAAGCTAGACTCTGACC 57.326 36.000 0.00 0.00 0.00 4.02
495 2899 5.801531 TTTACAAAGCTAGACTCTGACCA 57.198 39.130 0.00 0.00 0.00 4.02
496 2900 5.801531 TTACAAAGCTAGACTCTGACCAA 57.198 39.130 0.00 0.00 0.00 3.67
497 2901 4.689612 ACAAAGCTAGACTCTGACCAAA 57.310 40.909 0.00 0.00 0.00 3.28
498 2902 5.234466 ACAAAGCTAGACTCTGACCAAAT 57.766 39.130 0.00 0.00 0.00 2.32
499 2903 5.625150 ACAAAGCTAGACTCTGACCAAATT 58.375 37.500 0.00 0.00 0.00 1.82
500 2904 6.064717 ACAAAGCTAGACTCTGACCAAATTT 58.935 36.000 0.00 0.00 0.00 1.82
501 2905 6.547510 ACAAAGCTAGACTCTGACCAAATTTT 59.452 34.615 0.00 0.00 0.00 1.82
502 2906 7.719633 ACAAAGCTAGACTCTGACCAAATTTTA 59.280 33.333 0.00 0.00 0.00 1.52
506 2910 9.553064 AGCTAGACTCTGACCAAATTTTATATG 57.447 33.333 0.00 0.00 0.00 1.78
509 2913 8.970859 AGACTCTGACCAAATTTTATATGGAG 57.029 34.615 0.04 2.26 37.66 3.86
511 2915 8.738645 ACTCTGACCAAATTTTATATGGAGAC 57.261 34.615 0.04 0.00 37.66 3.36
532 2936 9.317936 GGAGACTAGAAAGAACTAGACTAGTAC 57.682 40.741 15.51 5.79 42.18 2.73
536 2940 9.822185 ACTAGAAAGAACTAGACTAGTACTAGC 57.178 37.037 26.54 19.29 40.88 3.42
629 3033 1.927174 CGGGACTTGAATCATCACGAC 59.073 52.381 2.60 0.00 34.61 4.34
632 3036 1.927174 GACTTGAATCATCACGACGGG 59.073 52.381 0.00 0.00 34.61 5.28
642 3046 3.998672 ACGACGGGGATTGCACGT 61.999 61.111 4.73 4.73 44.35 4.49
678 3083 0.249073 CGTGAGACCACCATCGGATC 60.249 60.000 0.00 0.00 40.12 3.36
679 3084 0.824109 GTGAGACCACCATCGGATCA 59.176 55.000 0.00 0.00 37.33 2.92
737 3153 0.750546 TCACGCTGCCGGAGTAGTAT 60.751 55.000 5.05 0.00 39.22 2.12
738 3154 0.317938 CACGCTGCCGGAGTAGTATC 60.318 60.000 5.05 0.00 39.22 2.24
739 3155 1.082038 CGCTGCCGGAGTAGTATCG 60.082 63.158 5.05 0.00 0.00 2.92
740 3156 1.504647 CGCTGCCGGAGTAGTATCGA 61.505 60.000 5.05 0.00 0.00 3.59
741 3157 0.882474 GCTGCCGGAGTAGTATCGAT 59.118 55.000 5.05 2.16 0.00 3.59
789 3222 3.642503 CCGCCAACCCCACTACCA 61.643 66.667 0.00 0.00 0.00 3.25
877 3314 2.760374 CTTGTCCTCCACTTGTGTCTC 58.240 52.381 0.00 0.00 0.00 3.36
884 3350 2.491693 CTCCACTTGTGTCTCTCTCTCC 59.508 54.545 0.00 0.00 0.00 3.71
937 3403 4.194720 CGAGAACGGGAGCGGAGG 62.195 72.222 0.00 0.00 35.72 4.30
938 3404 4.516195 GAGAACGGGAGCGGAGGC 62.516 72.222 0.00 0.00 40.37 4.70
960 3426 3.792047 CGCCGGTGTGTCATGCTG 61.792 66.667 6.91 0.00 0.00 4.41
961 3427 2.669569 GCCGGTGTGTCATGCTGT 60.670 61.111 1.90 0.00 0.00 4.40
963 3429 1.301637 CCGGTGTGTCATGCTGTGA 60.302 57.895 0.00 0.00 0.00 3.58
965 3431 0.601046 CGGTGTGTCATGCTGTGAGT 60.601 55.000 0.00 0.00 37.56 3.41
967 3433 1.541015 GGTGTGTCATGCTGTGAGTGA 60.541 52.381 0.00 0.00 37.56 3.41
977 3443 2.158769 TGCTGTGAGTGACCAAGTGATT 60.159 45.455 0.00 0.00 0.00 2.57
979 3445 2.221169 TGTGAGTGACCAAGTGATTGC 58.779 47.619 0.00 0.00 0.00 3.56
981 3447 1.142667 TGAGTGACCAAGTGATTGCCA 59.857 47.619 0.00 0.00 0.00 4.92
988 3454 0.998226 CAAGTGATTGCCAACGTGCG 60.998 55.000 0.00 0.00 0.00 5.34
989 3455 2.731587 AAGTGATTGCCAACGTGCGC 62.732 55.000 0.00 0.00 0.00 6.09
990 3456 3.282920 TGATTGCCAACGTGCGCA 61.283 55.556 5.66 5.66 0.00 6.09
992 3458 2.354539 ATTGCCAACGTGCGCAAC 60.355 55.556 20.90 5.69 46.96 4.17
993 3459 2.997621 GATTGCCAACGTGCGCAACA 62.998 55.000 20.90 0.41 46.96 3.33
994 3460 2.619840 ATTGCCAACGTGCGCAACAA 62.620 50.000 20.90 10.56 46.96 2.83
995 3461 2.580867 GCCAACGTGCGCAACAAA 60.581 55.556 14.00 0.00 0.00 2.83
996 3462 1.948635 GCCAACGTGCGCAACAAAT 60.949 52.632 14.00 0.00 0.00 2.32
997 3463 0.661780 GCCAACGTGCGCAACAAATA 60.662 50.000 14.00 0.00 0.00 1.40
998 3464 1.049251 CCAACGTGCGCAACAAATAC 58.951 50.000 14.00 0.00 0.00 1.89
999 3465 1.598183 CCAACGTGCGCAACAAATACA 60.598 47.619 14.00 0.00 0.00 2.29
1000 3466 2.112522 CAACGTGCGCAACAAATACAA 58.887 42.857 14.00 0.00 0.00 2.41
1001 3467 2.697431 ACGTGCGCAACAAATACAAT 57.303 40.000 14.00 0.00 0.00 2.71
1003 3469 1.057566 CGTGCGCAACAAATACAATGC 59.942 47.619 14.00 0.00 35.49 3.56
1004 3470 1.389784 GTGCGCAACAAATACAATGCC 59.610 47.619 14.00 0.00 35.41 4.40
1005 3471 0.639756 GCGCAACAAATACAATGCCG 59.360 50.000 0.30 0.00 35.41 5.69
1006 3472 0.639756 CGCAACAAATACAATGCCGC 59.360 50.000 0.00 0.00 35.41 6.53
1007 3473 0.998669 GCAACAAATACAATGCCGCC 59.001 50.000 0.00 0.00 32.73 6.13
1008 3474 1.639280 CAACAAATACAATGCCGCCC 58.361 50.000 0.00 0.00 0.00 6.13
1009 3475 0.172352 AACAAATACAATGCCGCCCG 59.828 50.000 0.00 0.00 0.00 6.13
1010 3476 1.588667 CAAATACAATGCCGCCCGC 60.589 57.895 0.00 0.00 38.31 6.13
1011 3477 1.752694 AAATACAATGCCGCCCGCT 60.753 52.632 0.00 0.00 38.78 5.52
1012 3478 2.003658 AAATACAATGCCGCCCGCTG 62.004 55.000 0.00 0.00 38.78 5.18
1013 3479 3.697439 ATACAATGCCGCCCGCTGT 62.697 57.895 0.00 0.00 38.78 4.40
1014 3480 2.318519 ATACAATGCCGCCCGCTGTA 62.319 55.000 0.00 0.00 38.78 2.74
1015 3481 3.876198 CAATGCCGCCCGCTGTAC 61.876 66.667 0.00 0.00 38.78 2.90
1016 3482 4.096003 AATGCCGCCCGCTGTACT 62.096 61.111 0.00 0.00 38.78 2.73
1017 3483 3.622060 AATGCCGCCCGCTGTACTT 62.622 57.895 0.00 0.00 38.78 2.24
1018 3484 4.752879 TGCCGCCCGCTGTACTTC 62.753 66.667 0.00 0.00 38.78 3.01
1020 3486 4.124351 CCGCCCGCTGTACTTCGA 62.124 66.667 8.52 0.00 0.00 3.71
1021 3487 2.579787 CGCCCGCTGTACTTCGAG 60.580 66.667 8.52 0.00 0.00 4.04
1022 3488 2.886124 GCCCGCTGTACTTCGAGC 60.886 66.667 8.52 3.98 0.00 5.03
1026 3492 2.126071 GCTGTACTTCGAGCGGCA 60.126 61.111 1.45 0.00 34.85 5.69
1103 3569 3.680786 CGTGGTGAGTGCCTCCGA 61.681 66.667 0.50 0.00 0.00 4.55
1107 3573 2.649034 GTGAGTGCCTCCGACGAA 59.351 61.111 0.00 0.00 0.00 3.85
1108 3574 1.733399 GTGAGTGCCTCCGACGAAC 60.733 63.158 0.00 0.00 0.00 3.95
1109 3575 2.504244 GAGTGCCTCCGACGAACG 60.504 66.667 0.00 0.00 42.18 3.95
1119 3609 2.028043 GACGAACGGACCAACGGT 59.972 61.111 0.00 0.00 39.44 4.83
1150 3640 4.760047 CGTTGAGGGCCGGTGAGG 62.760 72.222 1.90 0.00 44.97 3.86
1166 3656 1.690985 AGGAGGGCAGGGAGTTAGC 60.691 63.158 0.00 0.00 0.00 3.09
1169 3659 2.124529 GGGCAGGGAGTTAGCTGC 60.125 66.667 0.00 0.00 41.60 5.25
1315 3811 2.347490 CTTCACCTCCACCACCGG 59.653 66.667 0.00 0.00 0.00 5.28
1436 3950 3.454375 TCGAAAACGAGAAGTTGAAGCT 58.546 40.909 0.00 0.00 43.37 3.74
1485 3999 2.994995 ACCATCACGAGCGACCCA 60.995 61.111 0.00 0.00 0.00 4.51
1488 4002 1.517257 CATCACGAGCGACCCACTC 60.517 63.158 0.00 0.00 0.00 3.51
1503 4017 2.354188 CTCAACGTGACGGCGACA 60.354 61.111 16.62 12.05 35.59 4.35
1536 4050 0.175302 AGATCTGCGACAGCTCCAAG 59.825 55.000 0.00 0.00 45.42 3.61
1572 4086 1.805945 GGGCTTCTACTGCGACACG 60.806 63.158 0.00 0.00 0.00 4.49
1671 4185 0.810031 CCGGATTCATCGACGCCTTT 60.810 55.000 0.00 0.00 0.00 3.11
1833 4350 3.905678 CGCCTCGCCTTCCTCGAT 61.906 66.667 0.00 0.00 35.25 3.59
1916 4439 1.264288 GCTCTTCCTCAACAACAACGG 59.736 52.381 0.00 0.00 0.00 4.44
1989 4512 4.364409 GTCGTCGCCAACAACCGC 62.364 66.667 0.00 0.00 0.00 5.68
2094 4617 1.604023 CCTCCCCTACGAGATCGGG 60.604 68.421 7.22 0.00 44.95 5.14
2112 4635 2.608988 CTGGTGGAGGGGCTCACT 60.609 66.667 0.00 0.00 31.08 3.41
2334 4868 4.154347 GAGCTGGTGAGGAGCCGG 62.154 72.222 0.00 0.00 37.12 6.13
2448 4982 2.180204 CCCGTTCATCCCGCACATC 61.180 63.158 0.00 0.00 0.00 3.06
2478 5012 2.746277 CCGGGGTTCAAGCCGAAG 60.746 66.667 0.00 0.00 36.39 3.79
2479 5013 2.345991 CGGGGTTCAAGCCGAAGA 59.654 61.111 0.00 0.00 36.39 2.87
2480 5014 2.033194 CGGGGTTCAAGCCGAAGAC 61.033 63.158 0.00 0.00 36.39 3.01
2481 5015 2.033194 GGGGTTCAAGCCGAAGACG 61.033 63.158 0.00 0.00 36.39 4.18
2482 5016 1.005394 GGGTTCAAGCCGAAGACGA 60.005 57.895 0.00 0.00 42.66 4.20
2483 5017 1.289800 GGGTTCAAGCCGAAGACGAC 61.290 60.000 0.00 0.00 42.66 4.34
2484 5018 1.615107 GGTTCAAGCCGAAGACGACG 61.615 60.000 0.00 0.00 42.66 5.12
2517 5051 4.974438 TTGCCGGTGGGGGAGAGT 62.974 66.667 1.90 0.00 37.48 3.24
2583 5122 1.336125 GACGTCGGGATAGGTGGTTAG 59.664 57.143 0.00 0.00 0.00 2.34
2584 5123 0.672342 CGTCGGGATAGGTGGTTAGG 59.328 60.000 0.00 0.00 0.00 2.69
2591 5141 2.361438 GGATAGGTGGTTAGGTGAGACG 59.639 54.545 0.00 0.00 0.00 4.18
2598 5148 0.601558 GTTAGGTGAGACGGACAGCA 59.398 55.000 0.00 0.00 38.08 4.41
2599 5149 1.000506 GTTAGGTGAGACGGACAGCAA 59.999 52.381 0.00 0.00 38.08 3.91
2600 5150 0.888619 TAGGTGAGACGGACAGCAAG 59.111 55.000 0.00 0.00 38.08 4.01
2617 5170 5.181009 CAGCAAGAAAGGTGACAGATATGA 58.819 41.667 0.00 0.00 39.26 2.15
2628 5181 5.006746 GGTGACAGATATGAATCGTTTGGTC 59.993 44.000 0.00 0.00 37.19 4.02
2630 5183 4.755411 ACAGATATGAATCGTTTGGTCGT 58.245 39.130 0.00 0.00 37.19 4.34
2631 5184 4.804139 ACAGATATGAATCGTTTGGTCGTC 59.196 41.667 0.00 0.00 37.19 4.20
2634 5192 6.640907 CAGATATGAATCGTTTGGTCGTCATA 59.359 38.462 0.00 0.00 37.19 2.15
2666 5224 7.892778 TTTAAGTGTTGTATAGCATGTCGAA 57.107 32.000 0.00 0.00 0.00 3.71
2688 5246 3.003378 ACTGATCGCATGAAGCATGATTG 59.997 43.478 0.00 0.00 43.81 2.67
2718 5276 5.049267 TGTTACCGGCAAATAAGTTCAACTC 60.049 40.000 0.00 0.00 0.00 3.01
2719 5277 3.751518 ACCGGCAAATAAGTTCAACTCT 58.248 40.909 0.00 0.00 0.00 3.24
2720 5278 4.142038 ACCGGCAAATAAGTTCAACTCTT 58.858 39.130 0.00 0.00 0.00 2.85
2721 5279 5.310451 ACCGGCAAATAAGTTCAACTCTTA 58.690 37.500 0.00 0.00 32.96 2.10
2722 5280 5.180680 ACCGGCAAATAAGTTCAACTCTTAC 59.819 40.000 0.00 0.00 31.53 2.34
2723 5281 5.411669 CCGGCAAATAAGTTCAACTCTTACT 59.588 40.000 0.00 0.00 31.53 2.24
2724 5282 6.307155 CGGCAAATAAGTTCAACTCTTACTG 58.693 40.000 0.00 0.00 31.53 2.74
2725 5283 6.086871 GGCAAATAAGTTCAACTCTTACTGC 58.913 40.000 0.00 0.00 38.02 4.40
2726 5284 6.072452 GGCAAATAAGTTCAACTCTTACTGCT 60.072 38.462 14.94 0.00 38.37 4.24
2727 5285 7.363431 GCAAATAAGTTCAACTCTTACTGCTT 58.637 34.615 0.00 0.00 37.03 3.91
2728 5286 7.535599 GCAAATAAGTTCAACTCTTACTGCTTC 59.464 37.037 0.00 0.00 37.03 3.86
2729 5287 7.674471 AATAAGTTCAACTCTTACTGCTTCC 57.326 36.000 0.00 0.00 31.53 3.46
2730 5288 4.965200 AGTTCAACTCTTACTGCTTCCT 57.035 40.909 0.00 0.00 0.00 3.36
2731 5289 4.888917 AGTTCAACTCTTACTGCTTCCTC 58.111 43.478 0.00 0.00 0.00 3.71
2732 5290 3.963428 TCAACTCTTACTGCTTCCTCC 57.037 47.619 0.00 0.00 0.00 4.30
2733 5291 3.239449 TCAACTCTTACTGCTTCCTCCA 58.761 45.455 0.00 0.00 0.00 3.86
2734 5292 3.840666 TCAACTCTTACTGCTTCCTCCAT 59.159 43.478 0.00 0.00 0.00 3.41
2735 5293 4.287067 TCAACTCTTACTGCTTCCTCCATT 59.713 41.667 0.00 0.00 0.00 3.16
2736 5294 4.479786 ACTCTTACTGCTTCCTCCATTC 57.520 45.455 0.00 0.00 0.00 2.67
2737 5295 3.198853 ACTCTTACTGCTTCCTCCATTCC 59.801 47.826 0.00 0.00 0.00 3.01
2738 5296 3.181329 TCTTACTGCTTCCTCCATTCCA 58.819 45.455 0.00 0.00 0.00 3.53
2739 5297 3.055094 TCTTACTGCTTCCTCCATTCCAC 60.055 47.826 0.00 0.00 0.00 4.02
2740 5298 0.036010 ACTGCTTCCTCCATTCCACG 60.036 55.000 0.00 0.00 0.00 4.94
2741 5299 0.250234 CTGCTTCCTCCATTCCACGA 59.750 55.000 0.00 0.00 0.00 4.35
2742 5300 0.911769 TGCTTCCTCCATTCCACGAT 59.088 50.000 0.00 0.00 0.00 3.73
2743 5301 2.103094 CTGCTTCCTCCATTCCACGATA 59.897 50.000 0.00 0.00 0.00 2.92
2744 5302 2.705658 TGCTTCCTCCATTCCACGATAT 59.294 45.455 0.00 0.00 0.00 1.63
2745 5303 3.901222 TGCTTCCTCCATTCCACGATATA 59.099 43.478 0.00 0.00 0.00 0.86
2746 5304 4.346709 TGCTTCCTCCATTCCACGATATAA 59.653 41.667 0.00 0.00 0.00 0.98
2747 5305 4.932200 GCTTCCTCCATTCCACGATATAAG 59.068 45.833 0.00 0.00 0.00 1.73
2748 5306 5.482908 CTTCCTCCATTCCACGATATAAGG 58.517 45.833 0.00 0.00 0.00 2.69
2749 5307 4.489737 TCCTCCATTCCACGATATAAGGT 58.510 43.478 0.00 0.00 0.00 3.50
2750 5308 4.283467 TCCTCCATTCCACGATATAAGGTG 59.717 45.833 0.00 0.74 0.00 4.00
2751 5309 4.040461 CCTCCATTCCACGATATAAGGTGT 59.960 45.833 0.00 0.00 32.30 4.16
2752 5310 5.245301 CCTCCATTCCACGATATAAGGTGTA 59.755 44.000 0.00 0.00 32.30 2.90
2753 5311 6.070767 CCTCCATTCCACGATATAAGGTGTAT 60.071 42.308 0.00 0.00 32.30 2.29
2754 5312 6.931838 TCCATTCCACGATATAAGGTGTATC 58.068 40.000 0.00 0.00 32.30 2.24
2755 5313 6.495526 TCCATTCCACGATATAAGGTGTATCA 59.504 38.462 0.00 0.00 32.30 2.15
2756 5314 7.015779 TCCATTCCACGATATAAGGTGTATCAA 59.984 37.037 0.00 0.00 32.30 2.57
2757 5315 7.824289 CCATTCCACGATATAAGGTGTATCAAT 59.176 37.037 0.00 0.00 32.30 2.57
2758 5316 9.219603 CATTCCACGATATAAGGTGTATCAATT 57.780 33.333 0.00 0.00 32.30 2.32
2759 5317 9.793259 ATTCCACGATATAAGGTGTATCAATTT 57.207 29.630 0.00 0.00 32.30 1.82
2760 5318 9.621629 TTCCACGATATAAGGTGTATCAATTTT 57.378 29.630 0.00 0.00 32.30 1.82
2761 5319 9.621629 TCCACGATATAAGGTGTATCAATTTTT 57.378 29.630 0.00 0.00 32.30 1.94
2762 5320 9.663904 CCACGATATAAGGTGTATCAATTTTTG 57.336 33.333 0.00 0.00 32.30 2.44
2765 5323 9.169468 CGATATAAGGTGTATCAATTTTTGTGC 57.831 33.333 0.00 0.00 0.00 4.57
2768 5326 8.761575 ATAAGGTGTATCAATTTTTGTGCAAG 57.238 30.769 0.00 0.00 0.00 4.01
2769 5327 6.160576 AGGTGTATCAATTTTTGTGCAAGT 57.839 33.333 0.00 0.00 0.00 3.16
2770 5328 6.215845 AGGTGTATCAATTTTTGTGCAAGTC 58.784 36.000 0.00 0.00 0.00 3.01
2771 5329 5.982516 GGTGTATCAATTTTTGTGCAAGTCA 59.017 36.000 0.00 0.00 0.00 3.41
2772 5330 6.478344 GGTGTATCAATTTTTGTGCAAGTCAA 59.522 34.615 0.00 0.00 0.00 3.18
2773 5331 7.010923 GGTGTATCAATTTTTGTGCAAGTCAAA 59.989 33.333 0.00 0.00 33.76 2.69
2774 5332 7.845622 GTGTATCAATTTTTGTGCAAGTCAAAC 59.154 33.333 0.78 0.00 35.05 2.93
2775 5333 6.981762 ATCAATTTTTGTGCAAGTCAAACA 57.018 29.167 0.78 0.00 35.05 2.83
2776 5334 6.981762 TCAATTTTTGTGCAAGTCAAACAT 57.018 29.167 0.78 0.00 35.05 2.71
2777 5335 6.773080 TCAATTTTTGTGCAAGTCAAACATG 58.227 32.000 0.78 0.00 35.05 3.21
2778 5336 6.370994 TCAATTTTTGTGCAAGTCAAACATGT 59.629 30.769 0.00 0.00 35.05 3.21
2779 5337 5.527511 TTTTTGTGCAAGTCAAACATGTG 57.472 34.783 0.00 0.00 35.05 3.21
2780 5338 3.865011 TTGTGCAAGTCAAACATGTGT 57.135 38.095 0.00 0.00 0.00 3.72
2781 5339 4.972514 TTGTGCAAGTCAAACATGTGTA 57.027 36.364 0.00 0.00 0.00 2.90
2782 5340 5.512753 TTGTGCAAGTCAAACATGTGTAT 57.487 34.783 0.00 0.00 0.00 2.29
2783 5341 4.857799 TGTGCAAGTCAAACATGTGTATG 58.142 39.130 0.00 0.00 40.24 2.39
2858 5416 3.877559 CACTTCCTAGTGCATCCAATGA 58.122 45.455 0.00 0.00 44.81 2.57
2859 5417 4.458397 CACTTCCTAGTGCATCCAATGAT 58.542 43.478 0.00 0.00 44.81 2.45
2860 5418 5.614308 CACTTCCTAGTGCATCCAATGATA 58.386 41.667 0.00 0.00 44.81 2.15
2861 5419 5.468072 CACTTCCTAGTGCATCCAATGATAC 59.532 44.000 0.00 0.00 44.81 2.24
2862 5420 4.257267 TCCTAGTGCATCCAATGATACG 57.743 45.455 0.00 0.00 0.00 3.06
2863 5421 3.895041 TCCTAGTGCATCCAATGATACGA 59.105 43.478 0.00 0.00 0.00 3.43
2864 5422 4.343814 TCCTAGTGCATCCAATGATACGAA 59.656 41.667 0.00 0.00 0.00 3.85
2865 5423 4.449068 CCTAGTGCATCCAATGATACGAAC 59.551 45.833 0.00 0.00 0.00 3.95
2866 5424 4.142609 AGTGCATCCAATGATACGAACT 57.857 40.909 0.00 0.00 0.00 3.01
2867 5425 4.517285 AGTGCATCCAATGATACGAACTT 58.483 39.130 0.00 0.00 0.00 2.66
2868 5426 4.333649 AGTGCATCCAATGATACGAACTTG 59.666 41.667 0.00 0.00 0.00 3.16
2869 5427 3.627123 TGCATCCAATGATACGAACTTGG 59.373 43.478 0.00 0.00 39.60 3.61
2870 5428 3.627577 GCATCCAATGATACGAACTTGGT 59.372 43.478 0.00 0.00 39.33 3.67
2871 5429 4.814234 GCATCCAATGATACGAACTTGGTA 59.186 41.667 0.00 0.00 39.33 3.25
2872 5430 5.470098 GCATCCAATGATACGAACTTGGTAT 59.530 40.000 0.00 0.00 39.33 2.73
2873 5431 6.017109 GCATCCAATGATACGAACTTGGTATT 60.017 38.462 0.00 0.00 39.33 1.89
2874 5432 6.918892 TCCAATGATACGAACTTGGTATTG 57.081 37.500 0.00 0.00 39.33 1.90
2875 5433 6.411376 TCCAATGATACGAACTTGGTATTGT 58.589 36.000 0.00 0.00 39.33 2.71
2876 5434 7.557724 TCCAATGATACGAACTTGGTATTGTA 58.442 34.615 0.00 0.00 39.33 2.41
2877 5435 7.709182 TCCAATGATACGAACTTGGTATTGTAG 59.291 37.037 0.00 0.00 39.33 2.74
2878 5436 7.709182 CCAATGATACGAACTTGGTATTGTAGA 59.291 37.037 0.00 0.00 34.69 2.59
2879 5437 9.261180 CAATGATACGAACTTGGTATTGTAGAT 57.739 33.333 0.00 0.00 31.01 1.98
2881 5439 9.909644 ATGATACGAACTTGGTATTGTAGATAC 57.090 33.333 0.00 0.00 31.01 2.24
2882 5440 9.128404 TGATACGAACTTGGTATTGTAGATACT 57.872 33.333 0.00 0.00 31.01 2.12
2945 5503 9.302345 ACATCTGTAACTTTATTCATACTCGTG 57.698 33.333 0.00 0.00 0.00 4.35
2969 5527 9.730420 GTGACAATTACAAGTACACTGATTTTT 57.270 29.630 0.00 0.00 0.00 1.94
3039 5600 7.111247 ACAATCAAATCTCTTGAAAACACCA 57.889 32.000 0.00 0.00 31.55 4.17
3053 5614 0.821517 ACACCATCTTCGCGGTATCA 59.178 50.000 6.13 0.00 32.98 2.15
3077 5639 6.463995 AATCTCTGCTCGAAGAAATACTCT 57.536 37.500 0.00 0.00 34.09 3.24
3088 5650 9.627395 CTCGAAGAAATACTCTAAAGACTTTGA 57.373 33.333 10.80 5.50 34.09 2.69
3128 5692 2.163010 CAGGAGCAATGATGTTGTCACC 59.837 50.000 0.00 0.00 40.28 4.02
3176 5740 7.361116 CCAATAATGATTTTTGAAAGCGCCTTT 60.361 33.333 2.29 3.89 36.29 3.11
3197 5761 2.807676 AGTCGCCCATCCAAAAAGATT 58.192 42.857 0.00 0.00 0.00 2.40
3211 5775 6.014413 TCCAAAAAGATTGGAAGCATTGATCA 60.014 34.615 7.43 0.00 44.90 2.92
3237 5801 2.372074 TACTTGGGCCGGGGATGAC 61.372 63.158 2.18 0.00 0.00 3.06
3252 5818 2.389715 GATGACCCCTAGTAGTGCAGT 58.610 52.381 0.00 0.00 0.00 4.40
3272 5838 5.121925 GCAGTCCGTCGAATCACTATATCTA 59.878 44.000 0.00 0.00 0.00 1.98
3295 5862 4.813161 ACACCATGATGTCGATGAAGATTC 59.187 41.667 0.00 0.00 0.00 2.52
3318 5885 2.289694 ACCTCCACAAAGAATCAGACCG 60.290 50.000 0.00 0.00 0.00 4.79
3362 5930 6.045318 ACAACATAAACTCATCAGATCCGAG 58.955 40.000 0.00 0.00 0.00 4.63
3379 5947 2.846039 GAGTACTCGGATTTGCGAGA 57.154 50.000 25.08 8.58 36.26 4.04
3467 6035 4.371855 TGATGATCACTAGACGTTGACC 57.628 45.455 0.00 0.00 0.00 4.02
3468 6036 2.913777 TGATCACTAGACGTTGACCG 57.086 50.000 0.00 0.00 44.03 4.79
3485 6053 5.759506 TGACCGAGAACATAGAGATCTTC 57.240 43.478 0.00 0.00 28.28 2.87
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 3.181516 GCTCTTGTCGACATGATTGGAAC 60.182 47.826 28.10 13.64 31.01 3.62
7 8 3.002791 GCTCTTGTCGACATGATTGGAA 58.997 45.455 28.10 8.18 31.01 3.53
33 35 5.758296 GTGTTCAGTTCACCTGTTCTCATTA 59.242 40.000 0.00 0.00 42.19 1.90
51 53 2.493035 ACATGACGATGCTTGTGTTCA 58.507 42.857 0.00 0.00 32.14 3.18
52 54 3.181520 GGTACATGACGATGCTTGTGTTC 60.182 47.826 0.00 0.00 32.14 3.18
53 55 2.742053 GGTACATGACGATGCTTGTGTT 59.258 45.455 0.00 0.00 32.14 3.32
54 56 2.028112 AGGTACATGACGATGCTTGTGT 60.028 45.455 0.00 0.00 32.14 3.72
55 57 2.349580 CAGGTACATGACGATGCTTGTG 59.650 50.000 0.00 0.00 32.14 3.33
65 67 2.093764 AGCAGAAGAGCAGGTACATGAC 60.094 50.000 12.53 4.41 36.85 3.06
78 80 2.627515 AGCACAAGAACAGCAGAAGA 57.372 45.000 0.00 0.00 0.00 2.87
82 84 2.481952 GGTCTAAGCACAAGAACAGCAG 59.518 50.000 0.00 0.00 30.68 4.24
88 90 3.745975 CACAATCGGTCTAAGCACAAGAA 59.254 43.478 0.00 0.00 0.00 2.52
90 92 3.325870 TCACAATCGGTCTAAGCACAAG 58.674 45.455 0.00 0.00 0.00 3.16
103 105 0.108615 AGGTCGGCTTCTCACAATCG 60.109 55.000 0.00 0.00 0.00 3.34
109 111 1.266178 TTGATCAGGTCGGCTTCTCA 58.734 50.000 0.00 0.00 0.00 3.27
153 155 0.539669 TCGAGCCTCTTGGTCAGTGA 60.540 55.000 0.00 0.00 41.69 3.41
184 186 7.378728 GTGTCAGTTTAGTCAAATAGTTTTGGC 59.621 37.037 0.00 0.00 45.75 4.52
187 189 9.950680 CATGTGTCAGTTTAGTCAAATAGTTTT 57.049 29.630 0.00 0.00 0.00 2.43
202 204 3.156293 TGCCTATTTGCATGTGTCAGTT 58.844 40.909 0.00 0.00 36.04 3.16
203 205 2.794103 TGCCTATTTGCATGTGTCAGT 58.206 42.857 0.00 0.00 36.04 3.41
204 206 3.057386 TGTTGCCTATTTGCATGTGTCAG 60.057 43.478 0.00 0.00 41.70 3.51
205 207 2.889678 TGTTGCCTATTTGCATGTGTCA 59.110 40.909 0.00 0.00 41.70 3.58
206 208 3.244976 GTGTTGCCTATTTGCATGTGTC 58.755 45.455 0.00 0.00 41.70 3.67
207 209 2.351641 CGTGTTGCCTATTTGCATGTGT 60.352 45.455 0.00 0.00 41.70 3.72
208 210 2.252747 CGTGTTGCCTATTTGCATGTG 58.747 47.619 0.00 0.00 41.70 3.21
209 211 1.885887 ACGTGTTGCCTATTTGCATGT 59.114 42.857 0.00 0.00 41.70 3.21
211 213 3.343617 AGTACGTGTTGCCTATTTGCAT 58.656 40.909 0.00 0.00 41.70 3.96
212 214 2.739913 GAGTACGTGTTGCCTATTTGCA 59.260 45.455 0.00 0.00 40.07 4.08
213 215 2.095372 GGAGTACGTGTTGCCTATTTGC 59.905 50.000 0.00 0.00 0.00 3.68
215 217 2.570302 AGGGAGTACGTGTTGCCTATTT 59.430 45.455 11.55 0.00 32.90 1.40
217 219 1.755380 GAGGGAGTACGTGTTGCCTAT 59.245 52.381 12.88 0.00 35.04 2.57
218 220 1.180029 GAGGGAGTACGTGTTGCCTA 58.820 55.000 12.88 0.00 35.04 3.93
221 223 0.249398 ATGGAGGGAGTACGTGTTGC 59.751 55.000 0.00 0.00 0.00 4.17
223 225 2.904434 AGAAATGGAGGGAGTACGTGTT 59.096 45.455 0.00 0.00 0.00 3.32
226 228 3.838903 AGAAAGAAATGGAGGGAGTACGT 59.161 43.478 0.00 0.00 0.00 3.57
227 229 4.473477 AGAAAGAAATGGAGGGAGTACG 57.527 45.455 0.00 0.00 0.00 3.67
230 232 4.471747 GGAGTAGAAAGAAATGGAGGGAGT 59.528 45.833 0.00 0.00 0.00 3.85
231 233 4.442192 CGGAGTAGAAAGAAATGGAGGGAG 60.442 50.000 0.00 0.00 0.00 4.30
233 235 3.798202 CGGAGTAGAAAGAAATGGAGGG 58.202 50.000 0.00 0.00 0.00 4.30
234 236 3.198872 GCGGAGTAGAAAGAAATGGAGG 58.801 50.000 0.00 0.00 0.00 4.30
235 237 2.860735 CGCGGAGTAGAAAGAAATGGAG 59.139 50.000 0.00 0.00 0.00 3.86
236 238 2.232941 ACGCGGAGTAGAAAGAAATGGA 59.767 45.455 12.47 0.00 0.00 3.41
237 239 2.618053 ACGCGGAGTAGAAAGAAATGG 58.382 47.619 12.47 0.00 0.00 3.16
238 240 6.916387 TCTTATACGCGGAGTAGAAAGAAATG 59.084 38.462 12.47 0.00 37.85 2.32
239 241 7.035840 TCTTATACGCGGAGTAGAAAGAAAT 57.964 36.000 12.47 0.00 37.85 2.17
240 242 6.441093 TCTTATACGCGGAGTAGAAAGAAA 57.559 37.500 12.47 0.00 37.85 2.52
241 243 6.630444 ATCTTATACGCGGAGTAGAAAGAA 57.370 37.500 12.47 7.13 41.01 2.52
242 244 6.630444 AATCTTATACGCGGAGTAGAAAGA 57.370 37.500 12.47 16.20 41.45 2.52
243 245 7.222224 ACAAAATCTTATACGCGGAGTAGAAAG 59.778 37.037 12.47 2.41 36.26 2.62
244 246 7.037438 ACAAAATCTTATACGCGGAGTAGAAA 58.963 34.615 12.47 0.00 36.26 2.52
245 247 6.567050 ACAAAATCTTATACGCGGAGTAGAA 58.433 36.000 12.47 0.00 38.94 2.10
246 248 6.140303 ACAAAATCTTATACGCGGAGTAGA 57.860 37.500 12.47 9.55 38.94 2.59
248 250 6.331845 TCAACAAAATCTTATACGCGGAGTA 58.668 36.000 12.47 0.00 40.03 2.59
249 251 5.172934 TCAACAAAATCTTATACGCGGAGT 58.827 37.500 12.47 0.00 0.00 3.85
250 252 5.712217 TCAACAAAATCTTATACGCGGAG 57.288 39.130 12.47 2.64 0.00 4.63
251 253 5.640357 ACTTCAACAAAATCTTATACGCGGA 59.360 36.000 12.47 0.00 0.00 5.54
252 254 5.864986 ACTTCAACAAAATCTTATACGCGG 58.135 37.500 12.47 0.00 0.00 6.46
253 255 6.530567 TGACTTCAACAAAATCTTATACGCG 58.469 36.000 3.53 3.53 0.00 6.01
254 256 8.627428 GTTTGACTTCAACAAAATCTTATACGC 58.373 33.333 0.00 0.00 38.63 4.42
255 257 9.658475 TGTTTGACTTCAACAAAATCTTATACG 57.342 29.630 0.00 0.00 38.63 3.06
258 260 9.868277 TGTTGTTTGACTTCAACAAAATCTTAT 57.132 25.926 8.02 0.00 46.72 1.73
268 270 6.763303 AACTTTGTGTTGTTTGACTTCAAC 57.237 33.333 0.00 0.00 42.62 3.18
352 367 8.294577 GTCAATATTATCAGATGCAGCATGAAA 58.705 33.333 14.22 4.62 39.69 2.69
354 369 7.166167 AGTCAATATTATCAGATGCAGCATGA 58.834 34.615 14.22 6.92 39.69 3.07
355 370 7.379098 AGTCAATATTATCAGATGCAGCATG 57.621 36.000 14.22 0.08 40.87 4.06
357 372 6.993902 TGAAGTCAATATTATCAGATGCAGCA 59.006 34.615 4.07 0.00 0.00 4.41
364 379 9.927668 TCGCAATATGAAGTCAATATTATCAGA 57.072 29.630 0.00 0.00 0.00 3.27
368 383 9.778993 GCATTCGCAATATGAAGTCAATATTAT 57.221 29.630 0.00 0.00 38.36 1.28
369 384 9.002600 AGCATTCGCAATATGAAGTCAATATTA 57.997 29.630 0.00 0.00 42.27 0.98
370 385 7.806487 CAGCATTCGCAATATGAAGTCAATATT 59.194 33.333 0.00 0.00 42.27 1.28
371 386 7.173735 TCAGCATTCGCAATATGAAGTCAATAT 59.826 33.333 0.00 0.00 42.27 1.28
372 387 6.482973 TCAGCATTCGCAATATGAAGTCAATA 59.517 34.615 0.00 0.00 42.27 1.90
373 388 5.297527 TCAGCATTCGCAATATGAAGTCAAT 59.702 36.000 0.00 0.00 42.27 2.57
375 390 4.190772 TCAGCATTCGCAATATGAAGTCA 58.809 39.130 0.00 0.00 42.27 3.41
376 391 4.801147 TCAGCATTCGCAATATGAAGTC 57.199 40.909 0.00 0.00 42.27 3.01
378 393 5.104562 ACATCAGCATTCGCAATATGAAG 57.895 39.130 0.00 0.00 42.27 3.02
379 394 5.503662 AACATCAGCATTCGCAATATGAA 57.496 34.783 0.00 0.00 42.27 2.57
380 395 5.503662 AAACATCAGCATTCGCAATATGA 57.496 34.783 0.00 0.00 42.27 2.15
381 396 6.578020 AAAAACATCAGCATTCGCAATATG 57.422 33.333 0.00 0.00 42.27 1.78
414 2818 7.027760 GTCCAGCTTTATAAAGTTTGGCTAAC 58.972 38.462 28.24 22.12 40.03 2.34
415 2819 6.946009 AGTCCAGCTTTATAAAGTTTGGCTAA 59.054 34.615 28.24 17.88 40.03 3.09
417 2821 5.325239 AGTCCAGCTTTATAAAGTTTGGCT 58.675 37.500 28.24 25.43 40.03 4.75
418 2822 5.416013 AGAGTCCAGCTTTATAAAGTTTGGC 59.584 40.000 28.24 24.40 40.03 4.52
419 2823 6.655003 TCAGAGTCCAGCTTTATAAAGTTTGG 59.345 38.462 27.70 27.70 40.79 3.28
421 2825 6.655425 GGTCAGAGTCCAGCTTTATAAAGTTT 59.345 38.462 22.94 11.52 38.28 2.66
422 2826 6.174049 GGTCAGAGTCCAGCTTTATAAAGTT 58.826 40.000 22.94 16.35 38.28 2.66
424 2828 5.734720 TGGTCAGAGTCCAGCTTTATAAAG 58.265 41.667 19.08 19.08 39.03 1.85
425 2829 5.755409 TGGTCAGAGTCCAGCTTTATAAA 57.245 39.130 0.00 0.00 0.00 1.40
426 2830 5.755409 TTGGTCAGAGTCCAGCTTTATAA 57.245 39.130 0.00 0.00 36.28 0.98
428 2832 4.640771 TTTGGTCAGAGTCCAGCTTTAT 57.359 40.909 0.00 0.00 36.28 1.40
430 2834 3.515602 ATTTGGTCAGAGTCCAGCTTT 57.484 42.857 0.00 0.00 36.28 3.51
431 2835 3.515602 AATTTGGTCAGAGTCCAGCTT 57.484 42.857 0.00 0.00 36.28 3.74
432 2836 3.515602 AAATTTGGTCAGAGTCCAGCT 57.484 42.857 0.00 0.00 36.28 4.24
434 2838 9.177608 TCATATTAAAATTTGGTCAGAGTCCAG 57.822 33.333 0.00 0.00 36.28 3.86
435 2839 9.527157 TTCATATTAAAATTTGGTCAGAGTCCA 57.473 29.630 0.00 0.00 0.00 4.02
469 2873 7.719633 TGGTCAGAGTCTAGCTTTGTAAAATTT 59.280 33.333 0.00 0.00 31.84 1.82
470 2874 7.224297 TGGTCAGAGTCTAGCTTTGTAAAATT 58.776 34.615 0.00 0.00 31.84 1.82
471 2875 6.769512 TGGTCAGAGTCTAGCTTTGTAAAAT 58.230 36.000 0.00 0.00 31.84 1.82
472 2876 6.169557 TGGTCAGAGTCTAGCTTTGTAAAA 57.830 37.500 0.00 0.00 31.84 1.52
473 2877 5.801531 TGGTCAGAGTCTAGCTTTGTAAA 57.198 39.130 0.00 0.00 31.84 2.01
475 2879 5.801531 TTTGGTCAGAGTCTAGCTTTGTA 57.198 39.130 0.00 0.00 31.84 2.41
477 2881 6.566197 AAATTTGGTCAGAGTCTAGCTTTG 57.434 37.500 0.00 0.00 0.00 2.77
478 2882 8.870075 ATAAAATTTGGTCAGAGTCTAGCTTT 57.130 30.769 0.00 0.00 0.00 3.51
480 2884 9.553064 CATATAAAATTTGGTCAGAGTCTAGCT 57.447 33.333 0.00 0.00 0.00 3.32
481 2885 8.778358 CCATATAAAATTTGGTCAGAGTCTAGC 58.222 37.037 0.00 0.00 0.00 3.42
484 2888 8.772250 TCTCCATATAAAATTTGGTCAGAGTCT 58.228 33.333 0.00 0.00 33.68 3.24
485 2889 8.831550 GTCTCCATATAAAATTTGGTCAGAGTC 58.168 37.037 0.00 0.00 33.68 3.36
506 2910 9.317936 GTACTAGTCTAGTTCTTTCTAGTCTCC 57.682 40.741 17.59 0.00 40.73 3.71
514 2918 8.768019 GCTAGCTAGTACTAGTCTAGTTCTTTC 58.232 40.741 33.28 23.29 41.49 2.62
515 2919 8.488668 AGCTAGCTAGTACTAGTCTAGTTCTTT 58.511 37.037 33.28 22.48 41.49 2.52
517 2921 7.607615 AGCTAGCTAGTACTAGTCTAGTTCT 57.392 40.000 33.28 26.89 41.49 3.01
518 2922 7.543520 GCTAGCTAGCTAGTACTAGTCTAGTTC 59.456 44.444 39.05 25.93 45.67 3.01
549 2953 1.430479 TCAAATTTGCGCAATGGCTG 58.570 45.000 25.64 17.90 38.10 4.85
629 3033 2.124736 ATCCACGTGCAATCCCCG 60.125 61.111 10.91 0.00 0.00 5.73
642 3046 0.179076 ACGAATCTCGCATGCATCCA 60.179 50.000 19.57 0.00 45.12 3.41
737 3153 2.423898 GGCGGTGGGAGAAGATCGA 61.424 63.158 0.00 0.00 0.00 3.59
738 3154 2.107141 GGCGGTGGGAGAAGATCG 59.893 66.667 0.00 0.00 0.00 3.69
739 3155 2.107141 CGGCGGTGGGAGAAGATC 59.893 66.667 0.00 0.00 0.00 2.75
740 3156 2.363795 TCGGCGGTGGGAGAAGAT 60.364 61.111 7.21 0.00 0.00 2.40
741 3157 3.379445 GTCGGCGGTGGGAGAAGA 61.379 66.667 7.21 0.00 0.00 2.87
789 3222 2.188817 ACGGAAGCTTAAGTGGGAGAT 58.811 47.619 0.00 0.00 0.00 2.75
877 3314 4.140900 TGGTATAAGAAGGGAGGGAGAGAG 60.141 50.000 0.00 0.00 0.00 3.20
884 3350 1.070289 GCCGTGGTATAAGAAGGGAGG 59.930 57.143 0.00 0.00 0.00 4.30
943 3409 3.792047 CAGCATGACACACCGGCG 61.792 66.667 0.00 0.00 39.69 6.46
944 3410 2.669569 ACAGCATGACACACCGGC 60.670 61.111 0.00 0.00 39.69 6.13
945 3411 1.293963 CTCACAGCATGACACACCGG 61.294 60.000 0.00 0.00 39.69 5.28
946 3412 0.601046 ACTCACAGCATGACACACCG 60.601 55.000 0.00 0.00 39.69 4.94
949 3415 1.541015 GGTCACTCACAGCATGACACA 60.541 52.381 0.00 0.00 43.73 3.72
956 3422 0.829990 TCACTTGGTCACTCACAGCA 59.170 50.000 0.00 0.00 0.00 4.41
959 3425 2.221169 GCAATCACTTGGTCACTCACA 58.779 47.619 0.00 0.00 32.72 3.58
960 3426 1.537202 GGCAATCACTTGGTCACTCAC 59.463 52.381 0.00 0.00 32.72 3.51
961 3427 1.142667 TGGCAATCACTTGGTCACTCA 59.857 47.619 0.00 0.00 32.72 3.41
963 3429 1.956477 GTTGGCAATCACTTGGTCACT 59.044 47.619 1.92 0.00 32.72 3.41
965 3431 0.950836 CGTTGGCAATCACTTGGTCA 59.049 50.000 1.92 0.00 32.72 4.02
967 3433 0.667993 CACGTTGGCAATCACTTGGT 59.332 50.000 1.92 0.00 32.72 3.67
977 3443 2.619840 ATTTGTTGCGCACGTTGGCA 62.620 50.000 11.12 6.20 37.39 4.92
979 3445 1.049251 GTATTTGTTGCGCACGTTGG 58.951 50.000 11.12 0.00 0.00 3.77
981 3447 2.476873 TTGTATTTGTTGCGCACGTT 57.523 40.000 11.12 0.00 0.00 3.99
988 3454 0.998669 GGCGGCATTGTATTTGTTGC 59.001 50.000 3.07 0.00 0.00 4.17
989 3455 1.639280 GGGCGGCATTGTATTTGTTG 58.361 50.000 12.47 0.00 0.00 3.33
990 3456 0.172352 CGGGCGGCATTGTATTTGTT 59.828 50.000 12.47 0.00 0.00 2.83
991 3457 1.806568 CGGGCGGCATTGTATTTGT 59.193 52.632 12.47 0.00 0.00 2.83
992 3458 1.588667 GCGGGCGGCATTGTATTTG 60.589 57.895 12.47 0.00 42.87 2.32
993 3459 2.804856 GCGGGCGGCATTGTATTT 59.195 55.556 12.47 0.00 42.87 1.40
1003 3469 4.124351 TCGAAGTACAGCGGGCGG 62.124 66.667 7.40 0.00 0.00 6.13
1004 3470 2.579787 CTCGAAGTACAGCGGGCG 60.580 66.667 7.40 0.00 0.00 6.13
1009 3475 2.126071 TGCCGCTCGAAGTACAGC 60.126 61.111 0.00 0.00 0.00 4.40
1010 3476 2.161486 GCTGCCGCTCGAAGTACAG 61.161 63.158 0.00 0.00 0.00 2.74
1011 3477 2.126071 GCTGCCGCTCGAAGTACA 60.126 61.111 0.00 0.00 0.00 2.90
1012 3478 2.126071 TGCTGCCGCTCGAAGTAC 60.126 61.111 0.70 0.00 36.97 2.73
1013 3479 2.154798 AACTGCTGCCGCTCGAAGTA 62.155 55.000 0.70 0.00 36.97 2.24
1014 3480 3.521529 AACTGCTGCCGCTCGAAGT 62.522 57.895 0.70 0.00 36.97 3.01
1015 3481 2.734673 GAACTGCTGCCGCTCGAAG 61.735 63.158 0.70 0.00 36.97 3.79
1016 3482 2.738521 GAACTGCTGCCGCTCGAA 60.739 61.111 0.70 0.00 36.97 3.71
1017 3483 4.742201 GGAACTGCTGCCGCTCGA 62.742 66.667 0.70 0.00 36.97 4.04
1050 3516 2.050442 GCAAAAACGAGCCCACGG 60.050 61.111 0.00 0.00 37.61 4.94
1054 3520 1.082104 CGAGTGCAAAAACGAGCCC 60.082 57.895 0.00 0.00 0.00 5.19
1055 3521 1.725973 GCGAGTGCAAAAACGAGCC 60.726 57.895 0.00 0.00 42.15 4.70
1062 3528 1.063327 CACAACCGCGAGTGCAAAA 59.937 52.632 8.23 0.00 42.97 2.44
1103 3569 2.279650 CACCGTTGGTCCGTTCGT 60.280 61.111 0.00 0.00 31.02 3.85
1107 3573 3.485346 ATTGCCACCGTTGGTCCGT 62.485 57.895 0.00 0.00 45.98 4.69
1108 3574 2.671619 ATTGCCACCGTTGGTCCG 60.672 61.111 0.00 0.00 45.98 4.79
1109 3575 2.961768 CATTGCCACCGTTGGTCC 59.038 61.111 0.00 0.00 45.98 4.46
1110 3576 2.258286 GCATTGCCACCGTTGGTC 59.742 61.111 0.00 0.00 45.98 4.02
1111 3577 3.669344 CGCATTGCCACCGTTGGT 61.669 61.111 0.00 0.00 45.98 3.67
1150 3640 1.524482 CAGCTAACTCCCTGCCCTC 59.476 63.158 0.00 0.00 0.00 4.30
1166 3656 2.537560 GGAACATGATCGCGGGCAG 61.538 63.158 6.13 2.09 0.00 4.85
1169 3659 2.967076 CCGGAACATGATCGCGGG 60.967 66.667 18.69 7.99 32.76 6.13
1347 3843 4.394712 GGAGGTGGAGGGCACACG 62.395 72.222 0.00 0.00 39.69 4.49
1348 3844 3.249189 TGGAGGTGGAGGGCACAC 61.249 66.667 0.00 0.00 38.10 3.82
1349 3845 3.249189 GTGGAGGTGGAGGGCACA 61.249 66.667 0.00 0.00 0.00 4.57
1436 3950 1.610967 TGGATCACCGGGTACAGCA 60.611 57.895 6.32 0.00 39.42 4.41
1485 3999 2.354305 GTCGCCGTCACGTTGAGT 60.354 61.111 0.00 0.00 0.00 3.41
1488 4002 2.469847 CATGTCGCCGTCACGTTG 59.530 61.111 0.00 0.00 0.00 4.10
1656 4170 0.810031 CCGGAAAGGCGTCGATGAAT 60.810 55.000 9.31 0.00 0.00 2.57
1916 4439 3.195698 GGATGACGCCGGTGAAGC 61.196 66.667 24.59 12.08 0.00 3.86
1989 4512 4.506255 GGGATGGGGCCGGTGAAG 62.506 72.222 1.90 0.00 0.00 3.02
2094 4617 4.416738 GTGAGCCCCTCCACCAGC 62.417 72.222 0.00 0.00 0.00 4.85
2433 4967 1.823899 GGGGATGTGCGGGATGAAC 60.824 63.158 0.00 0.00 0.00 3.18
2499 5033 3.411517 CTCTCCCCCACCGGCAAT 61.412 66.667 0.00 0.00 0.00 3.56
2583 5122 0.033504 TTCTTGCTGTCCGTCTCACC 59.966 55.000 0.00 0.00 0.00 4.02
2584 5123 1.795286 CTTTCTTGCTGTCCGTCTCAC 59.205 52.381 0.00 0.00 0.00 3.51
2591 5141 1.876156 CTGTCACCTTTCTTGCTGTCC 59.124 52.381 0.00 0.00 0.00 4.02
2598 5148 6.644347 ACGATTCATATCTGTCACCTTTCTT 58.356 36.000 0.00 0.00 0.00 2.52
2599 5149 6.227298 ACGATTCATATCTGTCACCTTTCT 57.773 37.500 0.00 0.00 0.00 2.52
2600 5150 6.910536 AACGATTCATATCTGTCACCTTTC 57.089 37.500 0.00 0.00 0.00 2.62
2617 5170 6.677781 AATTCATATGACGACCAAACGATT 57.322 33.333 4.48 0.00 37.03 3.34
2666 5224 2.320745 TCATGCTTCATGCGATCAGT 57.679 45.000 2.12 0.00 46.63 3.41
2688 5246 2.785713 ATTTGCCGGTAACACAACAC 57.214 45.000 3.74 0.00 32.53 3.32
2718 5276 3.274288 GTGGAATGGAGGAAGCAGTAAG 58.726 50.000 0.00 0.00 0.00 2.34
2719 5277 2.354704 CGTGGAATGGAGGAAGCAGTAA 60.355 50.000 0.00 0.00 0.00 2.24
2720 5278 1.207089 CGTGGAATGGAGGAAGCAGTA 59.793 52.381 0.00 0.00 0.00 2.74
2721 5279 0.036010 CGTGGAATGGAGGAAGCAGT 60.036 55.000 0.00 0.00 0.00 4.40
2722 5280 0.250234 TCGTGGAATGGAGGAAGCAG 59.750 55.000 0.00 0.00 0.00 4.24
2723 5281 0.911769 ATCGTGGAATGGAGGAAGCA 59.088 50.000 0.00 0.00 0.00 3.91
2724 5282 2.910688 TATCGTGGAATGGAGGAAGC 57.089 50.000 0.00 0.00 0.00 3.86
2725 5283 5.012148 ACCTTATATCGTGGAATGGAGGAAG 59.988 44.000 0.00 0.00 0.00 3.46
2726 5284 4.905456 ACCTTATATCGTGGAATGGAGGAA 59.095 41.667 0.00 0.00 0.00 3.36
2727 5285 4.283467 CACCTTATATCGTGGAATGGAGGA 59.717 45.833 0.00 0.00 0.00 3.71
2728 5286 4.040461 ACACCTTATATCGTGGAATGGAGG 59.960 45.833 5.09 0.00 34.18 4.30
2729 5287 5.215252 ACACCTTATATCGTGGAATGGAG 57.785 43.478 5.09 0.00 34.18 3.86
2730 5288 6.495526 TGATACACCTTATATCGTGGAATGGA 59.504 38.462 5.09 0.00 34.18 3.41
2731 5289 6.697395 TGATACACCTTATATCGTGGAATGG 58.303 40.000 5.09 0.00 34.18 3.16
2732 5290 8.777865 ATTGATACACCTTATATCGTGGAATG 57.222 34.615 5.09 0.00 34.18 2.67
2733 5291 9.793259 AAATTGATACACCTTATATCGTGGAAT 57.207 29.630 5.09 0.00 34.18 3.01
2734 5292 9.621629 AAAATTGATACACCTTATATCGTGGAA 57.378 29.630 5.09 0.00 34.18 3.53
2735 5293 9.621629 AAAAATTGATACACCTTATATCGTGGA 57.378 29.630 5.09 0.00 34.18 4.02
2736 5294 9.663904 CAAAAATTGATACACCTTATATCGTGG 57.336 33.333 5.09 0.00 34.18 4.94
2739 5297 9.169468 GCACAAAAATTGATACACCTTATATCG 57.831 33.333 0.00 0.00 32.58 2.92
2742 5300 9.853555 CTTGCACAAAAATTGATACACCTTATA 57.146 29.630 0.00 0.00 0.00 0.98
2743 5301 8.367156 ACTTGCACAAAAATTGATACACCTTAT 58.633 29.630 0.00 0.00 0.00 1.73
2744 5302 7.721402 ACTTGCACAAAAATTGATACACCTTA 58.279 30.769 0.00 0.00 0.00 2.69
2745 5303 6.581712 ACTTGCACAAAAATTGATACACCTT 58.418 32.000 0.00 0.00 0.00 3.50
2746 5304 6.160576 ACTTGCACAAAAATTGATACACCT 57.839 33.333 0.00 0.00 0.00 4.00
2747 5305 5.982516 TGACTTGCACAAAAATTGATACACC 59.017 36.000 0.00 0.00 0.00 4.16
2748 5306 7.462109 TTGACTTGCACAAAAATTGATACAC 57.538 32.000 0.00 0.00 0.00 2.90
2749 5307 7.547019 TGTTTGACTTGCACAAAAATTGATACA 59.453 29.630 2.83 0.00 38.63 2.29
2750 5308 7.904094 TGTTTGACTTGCACAAAAATTGATAC 58.096 30.769 2.83 0.00 38.63 2.24
2751 5309 8.549548 CATGTTTGACTTGCACAAAAATTGATA 58.450 29.630 2.83 0.00 38.63 2.15
2752 5310 6.981762 TGTTTGACTTGCACAAAAATTGAT 57.018 29.167 2.83 0.00 38.63 2.57
2753 5311 6.370994 ACATGTTTGACTTGCACAAAAATTGA 59.629 30.769 2.83 0.00 38.63 2.57
2754 5312 6.466413 CACATGTTTGACTTGCACAAAAATTG 59.534 34.615 0.00 4.46 38.63 2.32
2755 5313 6.149142 ACACATGTTTGACTTGCACAAAAATT 59.851 30.769 0.00 0.00 38.63 1.82
2756 5314 5.642919 ACACATGTTTGACTTGCACAAAAAT 59.357 32.000 0.00 1.05 38.63 1.82
2757 5315 4.993584 ACACATGTTTGACTTGCACAAAAA 59.006 33.333 0.00 0.00 38.63 1.94
2758 5316 4.564041 ACACATGTTTGACTTGCACAAAA 58.436 34.783 0.00 0.00 38.63 2.44
2759 5317 4.185467 ACACATGTTTGACTTGCACAAA 57.815 36.364 0.00 0.00 35.34 2.83
2760 5318 3.865011 ACACATGTTTGACTTGCACAA 57.135 38.095 0.00 0.00 0.00 3.33
2761 5319 4.337836 ACATACACATGTTTGACTTGCACA 59.662 37.500 9.11 0.00 42.98 4.57
2762 5320 4.858935 ACATACACATGTTTGACTTGCAC 58.141 39.130 9.11 0.00 42.98 4.57
2836 5394 5.130975 TATCATTGGATGCACTAGGAAGTGT 59.869 40.000 7.32 0.00 43.45 3.55
2837 5395 5.468072 GTATCATTGGATGCACTAGGAAGTG 59.532 44.000 0.00 1.14 43.88 3.16
2838 5396 4.785346 ATCATTGGATGCACTAGGAAGT 57.215 40.909 0.00 0.00 31.37 3.01
2839 5397 4.687948 CGTATCATTGGATGCACTAGGAAG 59.312 45.833 0.00 0.00 36.07 3.46
2840 5398 4.343814 TCGTATCATTGGATGCACTAGGAA 59.656 41.667 0.00 0.00 36.07 3.36
2841 5399 3.895041 TCGTATCATTGGATGCACTAGGA 59.105 43.478 0.00 0.00 36.07 2.94
2842 5400 4.257267 TCGTATCATTGGATGCACTAGG 57.743 45.455 0.00 0.00 36.07 3.02
2843 5401 5.292765 AGTTCGTATCATTGGATGCACTAG 58.707 41.667 0.00 0.00 36.07 2.57
2844 5402 5.276461 AGTTCGTATCATTGGATGCACTA 57.724 39.130 0.00 0.00 36.07 2.74
2845 5403 4.142609 AGTTCGTATCATTGGATGCACT 57.857 40.909 0.00 0.00 36.07 4.40
2846 5404 4.496341 CCAAGTTCGTATCATTGGATGCAC 60.496 45.833 0.00 0.00 44.04 4.57
2847 5405 3.627123 CCAAGTTCGTATCATTGGATGCA 59.373 43.478 0.00 0.00 44.04 3.96
2848 5406 3.627577 ACCAAGTTCGTATCATTGGATGC 59.372 43.478 9.65 0.00 44.04 3.91
2849 5407 7.012327 ACAATACCAAGTTCGTATCATTGGATG 59.988 37.037 9.65 7.76 44.04 3.51
2850 5408 7.054124 ACAATACCAAGTTCGTATCATTGGAT 58.946 34.615 9.65 0.00 44.04 3.41
2851 5409 6.411376 ACAATACCAAGTTCGTATCATTGGA 58.589 36.000 9.65 0.00 44.04 3.53
2852 5410 6.677781 ACAATACCAAGTTCGTATCATTGG 57.322 37.500 1.38 1.38 46.20 3.16
2853 5411 8.642908 TCTACAATACCAAGTTCGTATCATTG 57.357 34.615 0.00 0.00 0.00 2.82
2855 5413 9.909644 GTATCTACAATACCAAGTTCGTATCAT 57.090 33.333 0.00 0.00 0.00 2.45
2856 5414 9.128404 AGTATCTACAATACCAAGTTCGTATCA 57.872 33.333 0.00 0.00 0.00 2.15
2922 5480 8.517056 TGTCACGAGTATGAATAAAGTTACAGA 58.483 33.333 0.00 0.00 0.00 3.41
2943 5501 9.730420 AAAAATCAGTGTACTTGTAATTGTCAC 57.270 29.630 0.00 0.00 0.00 3.67
3020 5581 6.580041 CGAAGATGGTGTTTTCAAGAGATTTG 59.420 38.462 0.00 0.00 0.00 2.32
3039 5600 4.302455 CAGAGATTTGATACCGCGAAGAT 58.698 43.478 8.23 0.00 0.00 2.40
3053 5614 6.872920 AGAGTATTTCTTCGAGCAGAGATTT 58.127 36.000 0.00 0.00 29.61 2.17
3077 5639 5.312895 TGCAGCCACTTATCAAAGTCTTTA 58.687 37.500 0.00 0.00 44.28 1.85
3088 5650 2.756760 CTGTCCAATTGCAGCCACTTAT 59.243 45.455 0.00 0.00 0.00 1.73
3093 5657 0.609957 CTCCTGTCCAATTGCAGCCA 60.610 55.000 0.00 0.00 0.00 4.75
3128 5692 1.234615 ATGTTCGTGCGGGTGAAAGG 61.235 55.000 0.00 0.00 0.00 3.11
3176 5740 3.644966 ATCTTTTTGGATGGGCGACTA 57.355 42.857 0.00 0.00 0.00 2.59
3197 5761 3.758023 ACGTTCATTGATCAATGCTTCCA 59.242 39.130 34.12 19.55 45.77 3.53
3204 5768 4.096382 GCCCAAGTACGTTCATTGATCAAT 59.904 41.667 15.36 15.36 0.00 2.57
3211 5775 0.675522 CCGGCCCAAGTACGTTCATT 60.676 55.000 0.00 0.00 0.00 2.57
3237 5801 0.683504 ACGGACTGCACTACTAGGGG 60.684 60.000 0.00 0.00 0.00 4.79
3241 5805 1.812235 TTCGACGGACTGCACTACTA 58.188 50.000 0.00 0.00 0.00 1.82
3242 5806 1.132643 GATTCGACGGACTGCACTACT 59.867 52.381 0.00 0.00 0.00 2.57
3243 5807 1.135489 TGATTCGACGGACTGCACTAC 60.135 52.381 0.00 0.00 0.00 2.73
3244 5808 1.135489 GTGATTCGACGGACTGCACTA 60.135 52.381 0.00 0.00 0.00 2.74
3252 5818 5.410746 GGTGTAGATATAGTGATTCGACGGA 59.589 44.000 0.00 0.00 0.00 4.69
3272 5838 3.893326 TCTTCATCGACATCATGGTGT 57.107 42.857 12.48 12.48 34.39 4.16
3295 5862 3.077359 GTCTGATTCTTTGTGGAGGTGG 58.923 50.000 0.00 0.00 0.00 4.61


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.