Multiple sequence alignment - TraesCS2D01G544700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G544700 chr2D 100.000 4039 0 0 1 4039 621611327 621607289 0.000000e+00 7459.0
1 TraesCS2D01G544700 chr2D 81.378 1074 157 27 1144 2212 621755452 621754417 0.000000e+00 835.0
2 TraesCS2D01G544700 chr2D 79.959 968 165 16 1152 2104 621671391 621670438 0.000000e+00 686.0
3 TraesCS2D01G544700 chr2D 79.464 1008 172 22 1152 2134 621590021 621589024 0.000000e+00 682.0
4 TraesCS2D01G544700 chr2D 78.006 1023 162 29 1148 2134 621841425 621842420 5.820000e-163 584.0
5 TraesCS2D01G544700 chr2D 81.340 209 27 11 2475 2675 338839140 338838936 4.180000e-35 159.0
6 TraesCS2D01G544700 chr2D 73.575 386 92 8 381 762 650649387 650649008 5.440000e-29 139.0
7 TraesCS2D01G544700 chr2D 97.222 72 2 0 2273 2344 621608984 621609055 5.480000e-24 122.0
8 TraesCS2D01G544700 chr2B 94.789 1324 42 10 971 2274 763449806 763448490 0.000000e+00 2037.0
9 TraesCS2D01G544700 chr2B 81.071 1363 188 46 885 2212 763506567 763505240 0.000000e+00 1024.0
10 TraesCS2D01G544700 chr2B 90.040 743 65 6 2353 3092 763447993 763447257 0.000000e+00 953.0
11 TraesCS2D01G544700 chr2B 92.262 504 37 2 2343 2846 763448491 763447990 0.000000e+00 713.0
12 TraesCS2D01G544700 chr2B 79.763 1013 165 23 1147 2139 763493314 763492322 0.000000e+00 699.0
13 TraesCS2D01G544700 chr2B 77.778 639 110 16 1525 2134 762805680 762805045 8.250000e-97 364.0
14 TraesCS2D01G544700 chr2B 83.537 328 48 4 1147 1474 763334870 763334549 6.560000e-78 302.0
15 TraesCS2D01G544700 chr2B 90.148 203 7 2 774 963 763450296 763450094 6.700000e-63 252.0
16 TraesCS2D01G544700 chr2B 86.598 194 24 2 1152 1344 762811694 762811502 3.160000e-51 213.0
17 TraesCS2D01G544700 chr2B 89.809 157 14 2 3329 3483 763447266 763447110 2.460000e-47 200.0
18 TraesCS2D01G544700 chr2B 92.958 71 3 2 1 69 763450342 763450272 7.140000e-18 102.0
19 TraesCS2D01G544700 chr3D 94.803 712 36 1 56 766 410527979 410527268 0.000000e+00 1109.0
20 TraesCS2D01G544700 chr1D 94.737 722 20 2 56 777 463927188 463926485 0.000000e+00 1107.0
21 TraesCS2D01G544700 chr1D 94.388 196 10 1 3135 3329 5353682 5353487 2.360000e-77 300.0
22 TraesCS2D01G544700 chr1D 82.178 202 24 9 2475 2674 495018480 495018289 3.230000e-36 163.0
23 TraesCS2D01G544700 chr1B 94.915 708 32 1 56 763 581421965 581422668 0.000000e+00 1105.0
24 TraesCS2D01G544700 chr1B 94.937 237 10 2 541 777 653821474 653821240 1.770000e-98 370.0
25 TraesCS2D01G544700 chr1B 92.969 128 7 2 3475 3600 338618166 338618039 6.890000e-43 185.0
26 TraesCS2D01G544700 chr1B 89.844 128 11 2 3475 3600 340324488 340324615 3.230000e-36 163.0
27 TraesCS2D01G544700 chr1B 91.566 83 4 2 2266 2345 584135438 584135356 1.190000e-20 111.0
28 TraesCS2D01G544700 chr2A 81.918 907 134 13 1221 2111 753464740 753463848 0.000000e+00 739.0
29 TraesCS2D01G544700 chr2A 87.823 271 14 8 3082 3333 758501343 758501073 2.360000e-77 300.0
30 TraesCS2D01G544700 chr2A 92.347 196 13 2 3137 3330 424635230 424635425 1.110000e-70 278.0
31 TraesCS2D01G544700 chr2A 88.800 125 12 2 3477 3600 576447049 576447172 6.990000e-33 152.0
32 TraesCS2D01G544700 chr2A 92.593 81 2 2 2269 2345 419030203 419030123 3.300000e-21 113.0
33 TraesCS2D01G544700 chr5B 94.231 364 20 1 412 775 520072578 520072940 4.560000e-154 555.0
34 TraesCS2D01G544700 chr5B 93.089 246 15 2 532 777 591573983 591574226 3.840000e-95 359.0
35 TraesCS2D01G544700 chr7D 95.470 287 13 0 3753 4039 629620867 629621153 3.680000e-125 459.0
36 TraesCS2D01G544700 chr7D 90.789 304 14 5 3477 3766 629624021 629623718 1.050000e-105 394.0
37 TraesCS2D01G544700 chr7D 82.178 202 24 10 2479 2674 536651750 536651945 3.230000e-36 163.0
38 TraesCS2D01G544700 chr1A 93.089 246 14 3 532 777 360989148 360989390 1.380000e-94 357.0
39 TraesCS2D01G544700 chr1A 91.919 198 14 2 3135 3330 592130599 592130402 3.980000e-70 276.0
40 TraesCS2D01G544700 chr1A 90.431 209 18 2 3130 3337 487088143 487088350 1.430000e-69 274.0
41 TraesCS2D01G544700 chr1A 98.305 59 1 0 3078 3136 200379586 200379528 1.990000e-18 104.0
42 TraesCS2D01G544700 chr1A 98.276 58 1 0 3079 3136 487088051 487088108 7.140000e-18 102.0
43 TraesCS2D01G544700 chr7B 87.456 287 18 5 3753 4039 304433179 304433447 8.430000e-82 315.0
44 TraesCS2D01G544700 chr7B 94.388 196 10 1 3135 3329 405652781 405652586 2.360000e-77 300.0
45 TraesCS2D01G544700 chr7B 86.063 287 25 7 3476 3748 304431940 304432225 1.100000e-75 294.0
46 TraesCS2D01G544700 chr7B 89.796 98 10 0 3753 3850 720530296 720530393 4.240000e-25 126.0
47 TraesCS2D01G544700 chr7A 94.359 195 7 4 3135 3327 522970669 522970861 3.050000e-76 296.0
48 TraesCS2D01G544700 chr7A 89.773 88 9 0 3395 3482 649466225 649466312 3.300000e-21 113.0
49 TraesCS2D01G544700 chr7A 83.193 119 20 0 294 412 726914133 726914015 4.270000e-20 110.0
50 TraesCS2D01G544700 chr7A 92.424 66 3 1 3073 3136 448193120 448193185 4.300000e-15 93.5
51 TraesCS2D01G544700 chr4A 93.367 196 11 2 3137 3330 117703306 117703111 5.110000e-74 289.0
52 TraesCS2D01G544700 chr4A 88.976 127 12 2 3476 3600 171200515 171200641 5.410000e-34 156.0
53 TraesCS2D01G544700 chr4A 88.421 95 6 3 2254 2344 615196344 615196437 4.270000e-20 110.0
54 TraesCS2D01G544700 chr4A 93.548 62 3 1 3078 3139 498169827 498169887 1.550000e-14 91.6
55 TraesCS2D01G544700 chr4A 82.759 87 10 2 3632 3718 171200707 171200788 5.600000e-09 73.1
56 TraesCS2D01G544700 chr3A 92.386 197 13 2 3137 3331 449125257 449125453 3.070000e-71 279.0
57 TraesCS2D01G544700 chr3A 87.302 126 14 2 3476 3600 14967520 14967644 4.210000e-30 143.0
58 TraesCS2D01G544700 chr6B 84.556 259 26 6 3477 3721 332877411 332877153 1.120000e-60 244.0
59 TraesCS2D01G544700 chr6B 81.250 208 26 10 2473 2677 655841498 655841695 5.410000e-34 156.0
60 TraesCS2D01G544700 chr6B 82.911 158 25 2 602 758 720416136 720415980 1.510000e-29 141.0
61 TraesCS2D01G544700 chr6B 91.011 89 2 4 2273 2355 561275760 561275672 9.170000e-22 115.0
62 TraesCS2D01G544700 chr6B 92.771 83 0 5 2271 2347 561275681 561275763 9.170000e-22 115.0
63 TraesCS2D01G544700 chr4D 82.843 204 33 2 2478 2681 473807021 473806820 8.920000e-42 182.0
64 TraesCS2D01G544700 chr4D 81.068 206 27 9 2477 2680 385630113 385629918 1.940000e-33 154.0
65 TraesCS2D01G544700 chr4D 90.411 73 5 2 3064 3136 125232670 125232600 1.200000e-15 95.3
66 TraesCS2D01G544700 chr6A 90.476 126 10 2 3477 3600 312078197 312078072 8.980000e-37 165.0
67 TraesCS2D01G544700 chr6A 88.800 125 12 2 3477 3600 107465833 107465710 6.990000e-33 152.0
68 TraesCS2D01G544700 chr6A 98.246 57 1 0 3080 3136 606850864 606850920 2.570000e-17 100.0
69 TraesCS2D01G544700 chr6D 80.583 206 32 5 2475 2680 199698976 199698779 6.990000e-33 152.0
70 TraesCS2D01G544700 chr6D 96.104 77 0 2 2271 2345 294774846 294774921 5.480000e-24 122.0
71 TraesCS2D01G544700 chr6D 93.827 81 2 3 2273 2351 294774920 294774841 7.090000e-23 119.0
72 TraesCS2D01G544700 chr5D 93.421 76 3 1 2269 2344 298964089 298964162 1.190000e-20 111.0
73 TraesCS2D01G544700 chr5D 98.214 56 1 0 3081 3136 381723801 381723746 9.240000e-17 99.0
74 TraesCS2D01G544700 chr5A 98.276 58 1 0 3079 3136 396299135 396299192 7.140000e-18 102.0
75 TraesCS2D01G544700 chr4B 94.118 68 2 2 3069 3136 109075191 109075126 7.140000e-18 102.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G544700 chr2D 621607289 621611327 4038 True 7459.0 7459 100.000000 1 4039 1 chr2D.!!$R3 4038
1 TraesCS2D01G544700 chr2D 621754417 621755452 1035 True 835.0 835 81.378000 1144 2212 1 chr2D.!!$R5 1068
2 TraesCS2D01G544700 chr2D 621670438 621671391 953 True 686.0 686 79.959000 1152 2104 1 chr2D.!!$R4 952
3 TraesCS2D01G544700 chr2D 621589024 621590021 997 True 682.0 682 79.464000 1152 2134 1 chr2D.!!$R2 982
4 TraesCS2D01G544700 chr2D 621841425 621842420 995 False 584.0 584 78.006000 1148 2134 1 chr2D.!!$F2 986
5 TraesCS2D01G544700 chr2B 763505240 763506567 1327 True 1024.0 1024 81.071000 885 2212 1 chr2B.!!$R5 1327
6 TraesCS2D01G544700 chr2B 763447110 763450342 3232 True 709.5 2037 91.667667 1 3483 6 chr2B.!!$R6 3482
7 TraesCS2D01G544700 chr2B 763492322 763493314 992 True 699.0 699 79.763000 1147 2139 1 chr2B.!!$R4 992
8 TraesCS2D01G544700 chr2B 762805045 762805680 635 True 364.0 364 77.778000 1525 2134 1 chr2B.!!$R1 609
9 TraesCS2D01G544700 chr3D 410527268 410527979 711 True 1109.0 1109 94.803000 56 766 1 chr3D.!!$R1 710
10 TraesCS2D01G544700 chr1D 463926485 463927188 703 True 1107.0 1107 94.737000 56 777 1 chr1D.!!$R2 721
11 TraesCS2D01G544700 chr1B 581421965 581422668 703 False 1105.0 1105 94.915000 56 763 1 chr1B.!!$F2 707
12 TraesCS2D01G544700 chr2A 753463848 753464740 892 True 739.0 739 81.918000 1221 2111 1 chr2A.!!$R2 890
13 TraesCS2D01G544700 chr7B 304431940 304433447 1507 False 304.5 315 86.759500 3476 4039 2 chr7B.!!$F2 563

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
128 129 1.709578 TGGTTTTTATGGTGGCAGCA 58.290 45.000 22.88 22.88 0.0 4.41 F
832 834 1.821136 ACCTAAGCCTACACGTACACC 59.179 52.381 0.00 0.00 0.0 4.16 F
2288 2694 0.042131 TTGTACTCCCTCCGTCCCAT 59.958 55.000 0.00 0.00 0.0 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1129 1433 0.249868 GTCTGCGGTGCTGCCATATA 60.250 55.0 0.0 0.0 36.97 0.86 R
2328 2734 0.106167 CATCTACTCCCTCCGTCCCA 60.106 60.0 0.0 0.0 0.00 4.37 R
3310 4203 0.107848 AACTAGGTGATTTCCCCGCG 60.108 55.0 0.0 0.0 0.00 6.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
128 129 1.709578 TGGTTTTTATGGTGGCAGCA 58.290 45.000 22.88 22.88 0.00 4.41
292 294 4.704540 CCTATGGCATGGTGAAAGTTAACA 59.295 41.667 10.98 0.00 0.00 2.41
301 303 4.699735 TGGTGAAAGTTAACATCGATGCAT 59.300 37.500 25.11 16.37 0.00 3.96
359 361 3.653344 CTGTTGTTCGAGATGACAAGGA 58.347 45.455 0.71 0.00 0.00 3.36
696 698 5.044179 TCCTGGTTCTTGGGATGATGTAATT 60.044 40.000 0.00 0.00 0.00 1.40
831 833 3.582714 AACCTAAGCCTACACGTACAC 57.417 47.619 0.00 0.00 0.00 2.90
832 834 1.821136 ACCTAAGCCTACACGTACACC 59.179 52.381 0.00 0.00 0.00 4.16
848 850 4.556501 CGTACACCAAACCTACTACGACAA 60.557 45.833 0.00 0.00 30.86 3.18
996 1296 5.310451 ACACGATGTACACCACCTTTAAAT 58.690 37.500 0.00 0.00 0.00 1.40
1299 1622 1.068083 CGACTGGTGCATCCGCTAT 59.932 57.895 0.00 0.00 39.64 2.97
1507 1848 0.106569 CATGCATGTCAAGGGGGCTA 60.107 55.000 18.91 0.00 0.00 3.93
1508 1849 0.184451 ATGCATGTCAAGGGGGCTAG 59.816 55.000 0.00 0.00 0.00 3.42
1510 1851 1.918253 CATGTCAAGGGGGCTAGCT 59.082 57.895 15.72 0.00 0.00 3.32
1533 1874 1.107114 TCATGAAGACGGAGCTCCTC 58.893 55.000 29.73 23.65 0.00 3.71
1598 1939 2.332104 CGACATGACTGTTGTCCTCAG 58.668 52.381 0.00 0.00 42.28 3.35
1715 2068 2.275318 GAAGAAAGGAGCGGATGTGAG 58.725 52.381 0.00 0.00 0.00 3.51
1914 2299 2.194212 GCCAGCTGCCATGGATGAG 61.194 63.158 18.40 8.74 40.51 2.90
2034 2427 1.069765 CAAGAGTGTCGTGGCCACT 59.930 57.895 32.28 14.61 45.52 4.00
2124 2523 9.761504 ATCTTCAACTAGAACAGATGATATGTG 57.238 33.333 0.00 0.00 36.11 3.21
2126 2525 6.877236 TCAACTAGAACAGATGATATGTGCA 58.123 36.000 0.44 0.00 31.59 4.57
2144 2543 1.520120 ATGATCGCAGGCAGTGTCG 60.520 57.895 0.00 0.00 0.00 4.35
2164 2563 4.010349 TCGTCTCTGATTGCTTGACTAGA 58.990 43.478 0.00 0.00 0.00 2.43
2165 2564 4.095632 TCGTCTCTGATTGCTTGACTAGAG 59.904 45.833 0.00 0.00 34.46 2.43
2236 2635 5.766670 ACATGAAAGAGTCTGATTGCTTCAA 59.233 36.000 0.00 0.00 32.78 2.69
2237 2636 6.433404 ACATGAAAGAGTCTGATTGCTTCAAT 59.567 34.615 0.00 0.00 36.72 2.57
2241 2640 7.548427 TGAAAGAGTCTGATTGCTTCAATAGAG 59.452 37.037 0.00 0.00 33.90 2.43
2259 2665 2.135933 GAGCGTGTACTGCTGTCTTTT 58.864 47.619 16.29 0.00 44.18 2.27
2283 2689 9.592196 TTTATATATAGTTTGTACTCCCTCCGT 57.408 33.333 0.00 0.00 35.78 4.69
2284 2690 7.700022 ATATATAGTTTGTACTCCCTCCGTC 57.300 40.000 0.00 0.00 35.78 4.79
2285 2691 1.264295 AGTTTGTACTCCCTCCGTCC 58.736 55.000 0.00 0.00 0.00 4.79
2286 2692 0.248565 GTTTGTACTCCCTCCGTCCC 59.751 60.000 0.00 0.00 0.00 4.46
2287 2693 0.178926 TTTGTACTCCCTCCGTCCCA 60.179 55.000 0.00 0.00 0.00 4.37
2288 2694 0.042131 TTGTACTCCCTCCGTCCCAT 59.958 55.000 0.00 0.00 0.00 4.00
2289 2695 0.928505 TGTACTCCCTCCGTCCCATA 59.071 55.000 0.00 0.00 0.00 2.74
2290 2696 1.288633 TGTACTCCCTCCGTCCCATAA 59.711 52.381 0.00 0.00 0.00 1.90
2291 2697 2.090943 TGTACTCCCTCCGTCCCATAAT 60.091 50.000 0.00 0.00 0.00 1.28
2292 2698 3.140707 TGTACTCCCTCCGTCCCATAATA 59.859 47.826 0.00 0.00 0.00 0.98
2293 2699 3.562108 ACTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
2294 2700 4.687262 ACTCCCTCCGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
2295 2701 5.019657 ACTCCCTCCGTCCCATAATATAA 57.980 43.478 0.00 0.00 0.00 0.98
2296 2702 5.024118 ACTCCCTCCGTCCCATAATATAAG 58.976 45.833 0.00 0.00 0.00 1.73
2297 2703 5.222484 ACTCCCTCCGTCCCATAATATAAGA 60.222 44.000 0.00 0.00 0.00 2.10
2298 2704 5.657446 TCCCTCCGTCCCATAATATAAGAA 58.343 41.667 0.00 0.00 0.00 2.52
2299 2705 5.482878 TCCCTCCGTCCCATAATATAAGAAC 59.517 44.000 0.00 0.00 0.00 3.01
2300 2706 5.408356 CCTCCGTCCCATAATATAAGAACG 58.592 45.833 0.00 0.00 0.00 3.95
2301 2707 5.047519 CCTCCGTCCCATAATATAAGAACGT 60.048 44.000 0.00 0.00 0.00 3.99
2302 2708 6.409524 TCCGTCCCATAATATAAGAACGTT 57.590 37.500 0.00 0.00 0.00 3.99
2303 2709 6.819284 TCCGTCCCATAATATAAGAACGTTT 58.181 36.000 0.46 0.00 0.00 3.60
2304 2710 7.274447 TCCGTCCCATAATATAAGAACGTTTT 58.726 34.615 0.46 0.00 0.00 2.43
2305 2711 7.769970 TCCGTCCCATAATATAAGAACGTTTTT 59.230 33.333 9.22 9.22 0.00 1.94
2306 2712 8.066000 CCGTCCCATAATATAAGAACGTTTTTC 58.934 37.037 7.42 0.00 0.00 2.29
2307 2713 8.605746 CGTCCCATAATATAAGAACGTTTTTCA 58.394 33.333 7.42 0.00 0.00 2.69
2335 2741 7.486802 AAAACGTTCTTATATTATGGGACGG 57.513 36.000 0.00 1.76 0.00 4.79
2336 2742 6.409524 AACGTTCTTATATTATGGGACGGA 57.590 37.500 0.00 0.00 0.00 4.69
2337 2743 6.022163 ACGTTCTTATATTATGGGACGGAG 57.978 41.667 13.18 0.00 0.00 4.63
2338 2744 5.047519 ACGTTCTTATATTATGGGACGGAGG 60.048 44.000 13.18 0.00 0.00 4.30
2339 2745 5.623824 CGTTCTTATATTATGGGACGGAGGG 60.624 48.000 0.00 0.00 0.00 4.30
2340 2746 5.279562 TCTTATATTATGGGACGGAGGGA 57.720 43.478 0.00 0.00 0.00 4.20
2341 2747 5.269991 TCTTATATTATGGGACGGAGGGAG 58.730 45.833 0.00 0.00 0.00 4.30
2354 2760 4.082845 ACGGAGGGAGTAGATGATATGTG 58.917 47.826 0.00 0.00 0.00 3.21
2363 2769 6.365970 AGTAGATGATATGTGGATGAACCC 57.634 41.667 0.00 0.00 38.00 4.11
2395 2801 0.103937 CAGCTTCAGAGTCCGGATCC 59.896 60.000 7.81 0.00 0.00 3.36
2398 2804 0.818296 CTTCAGAGTCCGGATCCGTT 59.182 55.000 31.22 17.16 37.81 4.44
2444 2850 7.741027 TTTTTGATCATTTGCATTTTGCCTA 57.259 28.000 0.00 0.00 44.23 3.93
2545 2951 2.812011 AGTGACCCACGTGAAAAATAGC 59.188 45.455 19.30 0.00 39.64 2.97
2548 2954 3.003897 TGACCCACGTGAAAAATAGCAAC 59.996 43.478 19.30 0.00 0.00 4.17
2570 2976 7.332430 GCAACTGGTGGTTTTAAAAGTTTAGTT 59.668 33.333 0.00 6.35 35.74 2.24
2579 2985 6.718522 TTTAAAAGTTTAGTTCCACCCCTG 57.281 37.500 0.00 0.00 0.00 4.45
2583 2989 3.053826 AGTTTAGTTCCACCCCTGAAGT 58.946 45.455 0.00 0.00 0.00 3.01
2594 3000 1.763770 CCTGAAGTTGAGGGGCTGT 59.236 57.895 0.00 0.00 0.00 4.40
2634 3040 2.028020 GGGTTCTCTCCACCACACTAAG 60.028 54.545 0.00 0.00 35.80 2.18
2663 3069 9.995003 ATATGTTGATGAGAGAAATAGAAGACC 57.005 33.333 0.00 0.00 0.00 3.85
2664 3070 7.244886 TGTTGATGAGAGAAATAGAAGACCA 57.755 36.000 0.00 0.00 0.00 4.02
2665 3071 7.099764 TGTTGATGAGAGAAATAGAAGACCAC 58.900 38.462 0.00 0.00 0.00 4.16
2666 3072 6.857437 TGATGAGAGAAATAGAAGACCACA 57.143 37.500 0.00 0.00 0.00 4.17
2667 3073 6.634805 TGATGAGAGAAATAGAAGACCACAC 58.365 40.000 0.00 0.00 0.00 3.82
2668 3074 6.211384 TGATGAGAGAAATAGAAGACCACACA 59.789 38.462 0.00 0.00 0.00 3.72
2669 3075 5.784177 TGAGAGAAATAGAAGACCACACAC 58.216 41.667 0.00 0.00 0.00 3.82
2732 3138 6.778559 ACCTTCACTAGTAGGAAATAGCCTAG 59.221 42.308 17.09 0.00 41.05 3.02
2765 3171 3.190327 CCGAAATTGTGTGATTACTGGCA 59.810 43.478 0.00 0.00 0.00 4.92
2767 3173 3.829886 AATTGTGTGATTACTGGCACG 57.170 42.857 0.00 0.00 37.83 5.34
2785 3191 2.435693 GGAGTGGAGGCGCTGGTAT 61.436 63.158 7.64 0.00 0.00 2.73
2792 3198 2.288579 TGGAGGCGCTGGTATTATAACG 60.289 50.000 7.64 0.00 0.00 3.18
2830 3236 3.333189 CAGCATCGACATCCGCCG 61.333 66.667 0.00 0.00 38.37 6.46
2877 3769 3.060000 GGGGCCCAACGTTAGTGC 61.060 66.667 26.86 3.76 0.00 4.40
2897 3789 7.526142 AGTGCTATAGTTATTACTGCTAGCA 57.474 36.000 18.22 18.22 45.12 3.49
2901 3793 7.230712 TGCTATAGTTATTACTGCTAGCACTGA 59.769 37.037 14.93 1.89 43.93 3.41
2902 3794 8.082852 GCTATAGTTATTACTGCTAGCACTGAA 58.917 37.037 14.93 8.45 41.64 3.02
2913 3805 2.555547 GCACTGAAGCCCAAACGCT 61.556 57.895 0.00 0.00 42.22 5.07
2939 3832 2.212812 TGTAACATGCATTGGGCTCA 57.787 45.000 0.00 0.00 45.15 4.26
2941 3834 1.105457 TAACATGCATTGGGCTCAGC 58.895 50.000 0.00 0.00 45.15 4.26
2942 3835 0.613853 AACATGCATTGGGCTCAGCT 60.614 50.000 0.00 0.00 45.15 4.24
2972 3865 2.102070 TGATGTATGCCGACGGTTTT 57.898 45.000 16.73 3.18 0.00 2.43
3084 3977 9.797642 TTATGCATCCACATCAATTAGTAATCT 57.202 29.630 0.19 0.00 0.00 2.40
3086 3979 9.970553 ATGCATCCACATCAATTAGTAATCTAT 57.029 29.630 0.00 0.00 0.00 1.98
3115 4008 8.102484 ACATAAATAGTTGATCCCCACTAAGT 57.898 34.615 0.00 0.00 0.00 2.24
3116 4009 8.211629 ACATAAATAGTTGATCCCCACTAAGTC 58.788 37.037 0.00 0.00 0.00 3.01
3117 4010 6.893020 AAATAGTTGATCCCCACTAAGTCT 57.107 37.500 0.00 0.00 0.00 3.24
3118 4011 7.989947 AAATAGTTGATCCCCACTAAGTCTA 57.010 36.000 0.00 0.00 0.00 2.59
3119 4012 7.989947 AATAGTTGATCCCCACTAAGTCTAA 57.010 36.000 0.00 0.00 0.00 2.10
3120 4013 8.568617 AATAGTTGATCCCCACTAAGTCTAAT 57.431 34.615 0.00 0.00 0.00 1.73
3121 4014 6.893020 AGTTGATCCCCACTAAGTCTAATT 57.107 37.500 0.00 0.00 0.00 1.40
3122 4015 6.890293 AGTTGATCCCCACTAAGTCTAATTC 58.110 40.000 0.00 0.00 0.00 2.17
3123 4016 6.674419 AGTTGATCCCCACTAAGTCTAATTCT 59.326 38.462 0.00 0.00 0.00 2.40
3124 4017 7.182930 AGTTGATCCCCACTAAGTCTAATTCTT 59.817 37.037 0.00 0.00 0.00 2.52
3125 4018 7.510675 TGATCCCCACTAAGTCTAATTCTTT 57.489 36.000 0.00 0.00 0.00 2.52
3126 4019 7.565680 TGATCCCCACTAAGTCTAATTCTTTC 58.434 38.462 0.00 0.00 0.00 2.62
3127 4020 6.945636 TCCCCACTAAGTCTAATTCTTTCA 57.054 37.500 0.00 0.00 0.00 2.69
3128 4021 7.324388 TCCCCACTAAGTCTAATTCTTTCAA 57.676 36.000 0.00 0.00 0.00 2.69
3129 4022 7.166167 TCCCCACTAAGTCTAATTCTTTCAAC 58.834 38.462 0.00 0.00 0.00 3.18
3130 4023 6.940298 CCCCACTAAGTCTAATTCTTTCAACA 59.060 38.462 0.00 0.00 0.00 3.33
3131 4024 7.611855 CCCCACTAAGTCTAATTCTTTCAACAT 59.388 37.037 0.00 0.00 0.00 2.71
3132 4025 8.454106 CCCACTAAGTCTAATTCTTTCAACATG 58.546 37.037 0.00 0.00 0.00 3.21
3133 4026 7.965107 CCACTAAGTCTAATTCTTTCAACATGC 59.035 37.037 0.00 0.00 0.00 4.06
3134 4027 8.506437 CACTAAGTCTAATTCTTTCAACATGCA 58.494 33.333 0.00 0.00 0.00 3.96
3135 4028 8.725148 ACTAAGTCTAATTCTTTCAACATGCAG 58.275 33.333 0.00 0.00 0.00 4.41
3136 4029 7.750229 AAGTCTAATTCTTTCAACATGCAGA 57.250 32.000 0.00 0.00 0.00 4.26
3137 4030 7.750229 AGTCTAATTCTTTCAACATGCAGAA 57.250 32.000 0.00 0.00 0.00 3.02
3138 4031 7.588512 AGTCTAATTCTTTCAACATGCAGAAC 58.411 34.615 0.00 0.00 0.00 3.01
3139 4032 7.446625 AGTCTAATTCTTTCAACATGCAGAACT 59.553 33.333 0.00 0.00 0.00 3.01
3140 4033 8.721478 GTCTAATTCTTTCAACATGCAGAACTA 58.279 33.333 0.00 0.00 0.00 2.24
3141 4034 9.453572 TCTAATTCTTTCAACATGCAGAACTAT 57.546 29.630 0.00 0.00 0.00 2.12
3144 4037 9.768662 AATTCTTTCAACATGCAGAACTATTTT 57.231 25.926 0.00 0.00 0.00 1.82
3145 4038 8.578308 TTCTTTCAACATGCAGAACTATTTTG 57.422 30.769 0.00 0.00 0.00 2.44
3146 4039 7.715657 TCTTTCAACATGCAGAACTATTTTGT 58.284 30.769 0.00 0.00 0.00 2.83
3147 4040 8.845227 TCTTTCAACATGCAGAACTATTTTGTA 58.155 29.630 0.00 0.00 0.00 2.41
3148 4041 9.121517 CTTTCAACATGCAGAACTATTTTGTAG 57.878 33.333 0.00 0.00 0.00 2.74
3149 4042 6.611381 TCAACATGCAGAACTATTTTGTAGC 58.389 36.000 0.00 0.00 0.00 3.58
3150 4043 6.206438 TCAACATGCAGAACTATTTTGTAGCA 59.794 34.615 0.00 0.00 35.03 3.49
3151 4044 5.942872 ACATGCAGAACTATTTTGTAGCAC 58.057 37.500 0.00 0.00 33.18 4.40
3152 4045 5.473162 ACATGCAGAACTATTTTGTAGCACA 59.527 36.000 0.00 0.00 33.18 4.57
3153 4046 6.151648 ACATGCAGAACTATTTTGTAGCACAT 59.848 34.615 0.00 0.00 33.18 3.21
3154 4047 5.941733 TGCAGAACTATTTTGTAGCACATG 58.058 37.500 0.00 0.00 0.00 3.21
3155 4048 4.795278 GCAGAACTATTTTGTAGCACATGC 59.205 41.667 0.00 0.00 42.49 4.06
3156 4049 5.619757 GCAGAACTATTTTGTAGCACATGCA 60.620 40.000 6.64 0.00 45.16 3.96
3157 4050 6.558009 CAGAACTATTTTGTAGCACATGCAT 58.442 36.000 6.64 0.00 45.16 3.96
3158 4051 7.679400 GCAGAACTATTTTGTAGCACATGCATA 60.679 37.037 6.64 0.00 45.16 3.14
3159 4052 7.641411 CAGAACTATTTTGTAGCACATGCATAC 59.359 37.037 6.64 6.59 45.16 2.39
3160 4053 6.377327 ACTATTTTGTAGCACATGCATACC 57.623 37.500 6.64 0.00 45.16 2.73
3161 4054 4.654091 ATTTTGTAGCACATGCATACCC 57.346 40.909 6.64 0.00 45.16 3.69
3162 4055 2.797177 TTGTAGCACATGCATACCCA 57.203 45.000 6.64 0.00 45.16 4.51
3163 4056 2.797177 TGTAGCACATGCATACCCAA 57.203 45.000 6.64 0.00 45.16 4.12
3164 4057 3.295585 TGTAGCACATGCATACCCAAT 57.704 42.857 6.64 0.00 45.16 3.16
3165 4058 3.630168 TGTAGCACATGCATACCCAATT 58.370 40.909 6.64 0.00 45.16 2.32
3166 4059 4.022603 TGTAGCACATGCATACCCAATTT 58.977 39.130 6.64 0.00 45.16 1.82
3167 4060 5.196695 TGTAGCACATGCATACCCAATTTA 58.803 37.500 6.64 0.00 45.16 1.40
3168 4061 5.654209 TGTAGCACATGCATACCCAATTTAA 59.346 36.000 6.64 0.00 45.16 1.52
3169 4062 5.874897 AGCACATGCATACCCAATTTAAT 57.125 34.783 6.64 0.00 45.16 1.40
3170 4063 6.237887 AGCACATGCATACCCAATTTAATT 57.762 33.333 6.64 0.00 45.16 1.40
3171 4064 6.050432 AGCACATGCATACCCAATTTAATTG 58.950 36.000 10.46 10.46 45.16 2.32
3172 4065 5.816777 GCACATGCATACCCAATTTAATTGT 59.183 36.000 15.40 2.09 41.59 2.71
3173 4066 6.315891 GCACATGCATACCCAATTTAATTGTT 59.684 34.615 15.40 5.78 41.59 2.83
3174 4067 7.465781 GCACATGCATACCCAATTTAATTGTTC 60.466 37.037 15.40 0.00 41.59 3.18
3175 4068 7.011295 CACATGCATACCCAATTTAATTGTTCC 59.989 37.037 15.40 0.68 38.59 3.62
3176 4069 6.611613 TGCATACCCAATTTAATTGTTCCA 57.388 33.333 15.40 2.87 38.59 3.53
3177 4070 7.192852 TGCATACCCAATTTAATTGTTCCAT 57.807 32.000 15.40 2.30 38.59 3.41
3178 4071 7.271511 TGCATACCCAATTTAATTGTTCCATC 58.728 34.615 15.40 3.09 38.59 3.51
3179 4072 7.125507 TGCATACCCAATTTAATTGTTCCATCT 59.874 33.333 15.40 0.00 38.59 2.90
3180 4073 7.653311 GCATACCCAATTTAATTGTTCCATCTC 59.347 37.037 15.40 0.00 38.59 2.75
3181 4074 6.544928 ACCCAATTTAATTGTTCCATCTCC 57.455 37.500 15.40 0.00 38.59 3.71
3182 4075 6.022315 ACCCAATTTAATTGTTCCATCTCCA 58.978 36.000 15.40 0.00 38.59 3.86
3183 4076 6.500049 ACCCAATTTAATTGTTCCATCTCCAA 59.500 34.615 15.40 0.00 38.59 3.53
3184 4077 7.182568 ACCCAATTTAATTGTTCCATCTCCAAT 59.817 33.333 15.40 0.00 38.59 3.16
3185 4078 8.703743 CCCAATTTAATTGTTCCATCTCCAATA 58.296 33.333 15.40 0.00 38.59 1.90
3186 4079 9.754382 CCAATTTAATTGTTCCATCTCCAATAG 57.246 33.333 15.40 0.00 38.59 1.73
3189 4082 8.519799 TTTAATTGTTCCATCTCCAATAGTCC 57.480 34.615 0.00 0.00 0.00 3.85
3190 4083 5.715439 ATTGTTCCATCTCCAATAGTCCA 57.285 39.130 0.00 0.00 0.00 4.02
3191 4084 5.512942 TTGTTCCATCTCCAATAGTCCAA 57.487 39.130 0.00 0.00 0.00 3.53
3192 4085 4.843728 TGTTCCATCTCCAATAGTCCAAC 58.156 43.478 0.00 0.00 0.00 3.77
3193 4086 3.819564 TCCATCTCCAATAGTCCAACG 57.180 47.619 0.00 0.00 0.00 4.10
3194 4087 3.104512 TCCATCTCCAATAGTCCAACGT 58.895 45.455 0.00 0.00 0.00 3.99
3195 4088 4.283337 TCCATCTCCAATAGTCCAACGTA 58.717 43.478 0.00 0.00 0.00 3.57
3196 4089 4.098960 TCCATCTCCAATAGTCCAACGTAC 59.901 45.833 0.00 0.00 0.00 3.67
3197 4090 4.142026 CCATCTCCAATAGTCCAACGTACA 60.142 45.833 0.00 0.00 0.00 2.90
3198 4091 5.453339 CCATCTCCAATAGTCCAACGTACAT 60.453 44.000 0.00 0.00 0.00 2.29
3199 4092 5.006153 TCTCCAATAGTCCAACGTACATG 57.994 43.478 0.00 0.00 0.00 3.21
3200 4093 3.527533 TCCAATAGTCCAACGTACATGC 58.472 45.455 0.00 0.00 0.00 4.06
3201 4094 3.055747 TCCAATAGTCCAACGTACATGCA 60.056 43.478 0.00 0.00 0.00 3.96
3202 4095 3.876914 CCAATAGTCCAACGTACATGCAT 59.123 43.478 0.00 0.00 0.00 3.96
3203 4096 5.053811 CCAATAGTCCAACGTACATGCATA 58.946 41.667 0.00 0.00 0.00 3.14
3204 4097 5.050363 CCAATAGTCCAACGTACATGCATAC 60.050 44.000 0.00 0.00 0.00 2.39
3205 4098 3.887621 AGTCCAACGTACATGCATACT 57.112 42.857 0.00 0.00 0.00 2.12
3206 4099 3.782046 AGTCCAACGTACATGCATACTC 58.218 45.455 0.00 0.00 0.00 2.59
3207 4100 3.447586 AGTCCAACGTACATGCATACTCT 59.552 43.478 0.00 0.00 0.00 3.24
3208 4101 4.081642 AGTCCAACGTACATGCATACTCTT 60.082 41.667 0.00 0.00 0.00 2.85
3209 4102 4.630069 GTCCAACGTACATGCATACTCTTT 59.370 41.667 0.00 0.00 0.00 2.52
3210 4103 4.629634 TCCAACGTACATGCATACTCTTTG 59.370 41.667 0.00 0.75 0.00 2.77
3211 4104 4.391830 CCAACGTACATGCATACTCTTTGT 59.608 41.667 0.00 0.00 0.00 2.83
3212 4105 5.106712 CCAACGTACATGCATACTCTTTGTT 60.107 40.000 0.00 0.00 0.00 2.83
3213 4106 5.779806 ACGTACATGCATACTCTTTGTTC 57.220 39.130 0.00 0.00 0.00 3.18
3214 4107 5.234752 ACGTACATGCATACTCTTTGTTCA 58.765 37.500 0.00 0.00 0.00 3.18
3215 4108 5.120208 ACGTACATGCATACTCTTTGTTCAC 59.880 40.000 0.00 0.00 0.00 3.18
3216 4109 5.120053 CGTACATGCATACTCTTTGTTCACA 59.880 40.000 0.00 0.00 0.00 3.58
3217 4110 6.183360 CGTACATGCATACTCTTTGTTCACAT 60.183 38.462 0.00 0.00 0.00 3.21
3218 4111 7.010091 CGTACATGCATACTCTTTGTTCACATA 59.990 37.037 0.00 0.00 0.00 2.29
3219 4112 7.870509 ACATGCATACTCTTTGTTCACATAT 57.129 32.000 0.00 0.00 0.00 1.78
3220 4113 8.962884 ACATGCATACTCTTTGTTCACATATA 57.037 30.769 0.00 0.00 0.00 0.86
3221 4114 9.394767 ACATGCATACTCTTTGTTCACATATAA 57.605 29.630 0.00 0.00 0.00 0.98
3302 4195 7.969314 TGCAAAATTAATCTTTAAAATCCCGC 58.031 30.769 0.00 0.00 0.00 6.13
3303 4196 7.604164 TGCAAAATTAATCTTTAAAATCCCGCA 59.396 29.630 0.00 0.00 0.00 5.69
3304 4197 8.116136 GCAAAATTAATCTTTAAAATCCCGCAG 58.884 33.333 0.00 0.00 0.00 5.18
3305 4198 7.770801 AAATTAATCTTTAAAATCCCGCAGC 57.229 32.000 0.00 0.00 0.00 5.25
3306 4199 5.906113 TTAATCTTTAAAATCCCGCAGCA 57.094 34.783 0.00 0.00 0.00 4.41
3307 4200 4.799564 AATCTTTAAAATCCCGCAGCAA 57.200 36.364 0.00 0.00 0.00 3.91
3308 4201 3.569250 TCTTTAAAATCCCGCAGCAAC 57.431 42.857 0.00 0.00 0.00 4.17
3309 4202 2.095466 TCTTTAAAATCCCGCAGCAACG 60.095 45.455 0.00 0.00 0.00 4.10
3310 4203 0.109504 TTAAAATCCCGCAGCAACGC 60.110 50.000 0.00 0.00 0.00 4.84
3321 4214 4.829518 GCAACGCGCGGGGAAATC 62.830 66.667 35.22 11.46 0.00 2.17
3322 4215 3.427425 CAACGCGCGGGGAAATCA 61.427 61.111 35.22 0.00 0.00 2.57
3323 4216 3.428282 AACGCGCGGGGAAATCAC 61.428 61.111 35.22 0.00 0.00 3.06
3326 4219 2.188469 GCGCGGGGAAATCACCTA 59.812 61.111 8.83 0.00 37.25 3.08
3327 4220 1.887707 GCGCGGGGAAATCACCTAG 60.888 63.158 8.83 0.00 37.25 3.02
3363 4256 9.535270 CGAGTAGTACTTGTTACTAACAACTAC 57.465 37.037 21.92 21.92 45.79 2.73
3375 4268 5.422145 ACTAACAACTACAAAGACAACGGT 58.578 37.500 0.00 0.00 0.00 4.83
3389 4282 4.959399 CGGTATACCCCCGCAAAA 57.041 55.556 16.47 0.00 38.85 2.44
3390 4283 3.407443 CGGTATACCCCCGCAAAAT 57.593 52.632 16.47 0.00 38.85 1.82
3392 4285 2.145536 CGGTATACCCCCGCAAAATAC 58.854 52.381 16.47 0.00 38.85 1.89
3395 4288 3.952967 GGTATACCCCCGCAAAATACAAA 59.047 43.478 11.17 0.00 0.00 2.83
3397 4290 4.729227 ATACCCCCGCAAAATACAAAAG 57.271 40.909 0.00 0.00 0.00 2.27
3398 4291 2.599677 ACCCCCGCAAAATACAAAAGA 58.400 42.857 0.00 0.00 0.00 2.52
3399 4292 2.297880 ACCCCCGCAAAATACAAAAGAC 59.702 45.455 0.00 0.00 0.00 3.01
3400 4293 2.297597 CCCCCGCAAAATACAAAAGACA 59.702 45.455 0.00 0.00 0.00 3.41
3402 4295 3.738791 CCCCGCAAAATACAAAAGACAAC 59.261 43.478 0.00 0.00 0.00 3.32
3403 4296 4.363999 CCCGCAAAATACAAAAGACAACA 58.636 39.130 0.00 0.00 0.00 3.33
3405 4298 5.040635 CCGCAAAATACAAAAGACAACAGT 58.959 37.500 0.00 0.00 0.00 3.55
3406 4299 6.202937 CCGCAAAATACAAAAGACAACAGTA 58.797 36.000 0.00 0.00 0.00 2.74
3407 4300 6.861055 CCGCAAAATACAAAAGACAACAGTAT 59.139 34.615 0.00 0.00 0.00 2.12
3408 4301 7.148983 CCGCAAAATACAAAAGACAACAGTATG 60.149 37.037 0.00 0.00 46.00 2.39
3424 4319 8.156820 ACAACAGTATGCAATCCAGCTAATATA 58.843 33.333 0.00 0.00 42.53 0.86
3425 4320 9.002600 CAACAGTATGCAATCCAGCTAATATAA 57.997 33.333 0.00 0.00 42.53 0.98
3493 4388 8.918116 TGCTTATGCATCCTATATACCTAAGAG 58.082 37.037 0.19 0.00 45.31 2.85
3508 4403 5.731924 ACCTAAGAGATTCATCCCCACTAT 58.268 41.667 0.00 0.00 0.00 2.12
3526 4421 7.826252 CCCCACTATCTAATTTATCTCCACATG 59.174 40.741 0.00 0.00 0.00 3.21
3529 4424 9.276590 CACTATCTAATTTATCTCCACATGCAA 57.723 33.333 0.00 0.00 0.00 4.08
3562 4457 2.782222 CCATGCAGCCACATCAGCC 61.782 63.158 0.00 0.00 0.00 4.85
3578 4474 2.916934 TCAGCCCACCTATAGTTTTGGT 59.083 45.455 10.06 0.00 33.87 3.67
3591 4487 1.068541 GTTTTGGTTCGAGGTCCATGC 60.069 52.381 6.84 0.00 33.50 4.06
3593 4489 0.605319 TTGGTTCGAGGTCCATGCAC 60.605 55.000 0.00 0.00 33.50 4.57
3597 4493 0.324614 TTCGAGGTCCATGCACACAT 59.675 50.000 0.00 0.00 36.79 3.21
3600 4496 1.376543 GAGGTCCATGCACACATCAG 58.623 55.000 0.00 0.00 32.87 2.90
3601 4497 0.694771 AGGTCCATGCACACATCAGT 59.305 50.000 0.00 0.00 32.87 3.41
3602 4498 1.074405 AGGTCCATGCACACATCAGTT 59.926 47.619 0.00 0.00 32.87 3.16
3603 4499 1.888512 GGTCCATGCACACATCAGTTT 59.111 47.619 0.00 0.00 32.87 2.66
3604 4500 2.095059 GGTCCATGCACACATCAGTTTC 60.095 50.000 0.00 0.00 32.87 2.78
3607 4516 2.592194 CATGCACACATCAGTTTCTGC 58.408 47.619 0.00 0.00 32.87 4.26
3610 4519 2.807967 TGCACACATCAGTTTCTGCTAC 59.192 45.455 0.00 0.00 0.00 3.58
3611 4520 2.159787 GCACACATCAGTTTCTGCTACG 60.160 50.000 0.00 0.00 0.00 3.51
3630 4539 0.179156 GCATGGGTTGTGCGAATCTG 60.179 55.000 0.00 0.00 32.29 2.90
3633 4542 1.675641 GGGTTGTGCGAATCTGGCT 60.676 57.895 0.00 0.00 0.00 4.75
3636 4545 2.017049 GGTTGTGCGAATCTGGCTAAT 58.983 47.619 0.00 0.00 0.00 1.73
3640 4549 5.392595 GGTTGTGCGAATCTGGCTAATTAAA 60.393 40.000 0.00 0.00 0.00 1.52
3667 4576 9.140874 TGCCCATCAATTAATTTATGTATGTCA 57.859 29.630 17.14 7.75 0.00 3.58
3690 4599 7.226325 GTCAAATCCTATTCATCTTCTCCACTG 59.774 40.741 0.00 0.00 0.00 3.66
3703 4612 2.019984 CTCCACTGAATAAAGGCAGCC 58.980 52.381 1.84 1.84 35.57 4.85
3704 4613 1.106285 CCACTGAATAAAGGCAGCCC 58.894 55.000 8.22 0.00 35.57 5.19
3727 4636 7.219917 GCCCTTTTGTTTTATTTTTCAGCAAAC 59.780 33.333 0.00 0.00 0.00 2.93
3748 4657 9.678260 GCAAACTATATGATTTCTCTCCCATAT 57.322 33.333 0.00 0.00 36.51 1.78
3758 5616 4.613925 TCTCTCCCATATGCAGATGTTC 57.386 45.455 19.36 0.00 0.00 3.18
3768 5626 6.258727 CCATATGCAGATGTTCGTCTTTTACT 59.741 38.462 19.36 0.00 0.00 2.24
3814 5672 3.411351 TTCGCCGAAACGAGCAGC 61.411 61.111 0.00 0.00 44.00 5.25
3817 5675 2.508891 CGCCGAAACGAGCAGCTAG 61.509 63.158 0.00 0.00 34.06 3.42
3895 5753 9.878599 AATTATACAAAGTTTTGAGTGTTCTCG 57.121 29.630 11.29 0.00 43.09 4.04
3896 5754 8.651391 TTATACAAAGTTTTGAGTGTTCTCGA 57.349 30.769 11.29 0.00 43.09 4.04
3897 5755 5.217895 ACAAAGTTTTGAGTGTTCTCGAC 57.782 39.130 11.29 0.00 43.09 4.20
3919 5777 0.107508 ATCTGATGCAAGGGACGTGG 60.108 55.000 0.00 0.00 38.52 4.94
3939 5797 0.461548 TGTCTGCAGCTAAGGATCGG 59.538 55.000 9.47 0.00 0.00 4.18
3942 5800 0.179062 CTGCAGCTAAGGATCGGCTT 60.179 55.000 0.00 0.00 33.74 4.35
3943 5801 0.253044 TGCAGCTAAGGATCGGCTTT 59.747 50.000 0.00 0.00 33.74 3.51
3944 5802 0.940833 GCAGCTAAGGATCGGCTTTC 59.059 55.000 0.00 0.00 33.74 2.62
3945 5803 1.587547 CAGCTAAGGATCGGCTTTCC 58.412 55.000 0.00 0.00 33.74 3.13
3946 5804 1.139853 CAGCTAAGGATCGGCTTTCCT 59.860 52.381 0.00 0.00 45.70 3.36
3947 5805 1.139853 AGCTAAGGATCGGCTTTCCTG 59.860 52.381 5.93 0.00 42.90 3.86
3948 5806 1.134371 GCTAAGGATCGGCTTTCCTGT 60.134 52.381 5.93 0.97 42.90 4.00
3949 5807 2.555199 CTAAGGATCGGCTTTCCTGTG 58.445 52.381 5.93 0.00 42.90 3.66
3950 5808 0.984230 AAGGATCGGCTTTCCTGTGA 59.016 50.000 5.93 0.00 42.90 3.58
3951 5809 0.984230 AGGATCGGCTTTCCTGTGAA 59.016 50.000 4.48 0.00 42.11 3.18
3952 5810 1.065854 AGGATCGGCTTTCCTGTGAAG 60.066 52.381 4.48 0.00 42.11 3.02
3953 5811 1.066143 GGATCGGCTTTCCTGTGAAGA 60.066 52.381 0.00 0.00 0.00 2.87
3954 5812 2.003301 GATCGGCTTTCCTGTGAAGAC 58.997 52.381 0.00 0.00 0.00 3.01
3955 5813 0.756294 TCGGCTTTCCTGTGAAGACA 59.244 50.000 0.00 0.00 31.40 3.41
3959 5817 1.200948 GCTTTCCTGTGAAGACATGCC 59.799 52.381 0.00 0.00 0.00 4.40
4012 5870 2.903784 TGTGTACTACTTGGGTGCATCT 59.096 45.455 0.00 0.00 32.58 2.90
4013 5871 3.056107 TGTGTACTACTTGGGTGCATCTC 60.056 47.826 0.00 0.00 32.58 2.75
4017 5875 0.616395 TACTTGGGTGCATCTCGGGA 60.616 55.000 0.00 0.00 0.00 5.14
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 3.686916 AGACTTGTTTAGCTGGTCCTC 57.313 47.619 0.00 0.00 0.00 3.71
46 47 7.323420 TCTGTTGTCGAATTCAGAGTCATATT 58.677 34.615 6.22 0.00 33.77 1.28
47 48 6.867550 TCTGTTGTCGAATTCAGAGTCATAT 58.132 36.000 6.22 0.00 33.77 1.78
48 49 6.267496 TCTGTTGTCGAATTCAGAGTCATA 57.733 37.500 6.22 0.00 33.77 2.15
49 50 5.139435 TCTGTTGTCGAATTCAGAGTCAT 57.861 39.130 6.22 0.00 33.77 3.06
50 51 4.584327 TCTGTTGTCGAATTCAGAGTCA 57.416 40.909 6.22 0.00 33.77 3.41
51 52 4.328440 CCATCTGTTGTCGAATTCAGAGTC 59.672 45.833 15.94 0.00 39.69 3.36
52 53 4.248859 CCATCTGTTGTCGAATTCAGAGT 58.751 43.478 15.94 6.21 39.69 3.24
53 54 3.063180 GCCATCTGTTGTCGAATTCAGAG 59.937 47.826 15.94 8.07 39.69 3.35
54 55 3.002791 GCCATCTGTTGTCGAATTCAGA 58.997 45.455 14.07 14.07 40.43 3.27
63 64 0.955428 TCGGCAAGCCATCTGTTGTC 60.955 55.000 12.19 0.00 35.37 3.18
128 129 3.323403 CACTCCTTTAGCTAGCTGCCTAT 59.677 47.826 27.68 1.87 44.23 2.57
301 303 4.060900 GAGAGTGTGTCTGCATGAAAAGA 58.939 43.478 0.00 0.00 34.71 2.52
359 361 1.180029 AGCCGCAGCAATGAAATCTT 58.820 45.000 0.00 0.00 43.56 2.40
564 566 1.885233 TCGATGGACAATTGCTTGCAA 59.115 42.857 10.57 10.57 35.69 4.08
696 698 4.962995 AGGAGATGAGAAATAAAGTCCGGA 59.037 41.667 0.00 0.00 0.00 5.14
772 774 7.502561 GGTTGCTGGTAAATAGGAGTCATATTT 59.497 37.037 22.33 22.33 36.87 1.40
786 788 1.810151 GCGATCAAGGTTGCTGGTAAA 59.190 47.619 0.00 0.00 0.00 2.01
791 793 2.642139 AATTGCGATCAAGGTTGCTG 57.358 45.000 0.00 0.00 35.37 4.41
831 833 7.148523 GGTTATTTCTTGTCGTAGTAGGTTTGG 60.149 40.741 0.00 0.00 0.00 3.28
832 834 7.385752 TGGTTATTTCTTGTCGTAGTAGGTTTG 59.614 37.037 0.00 0.00 0.00 2.93
848 850 8.556213 TTAATTAGTCAGCGTTGGTTATTTCT 57.444 30.769 0.00 0.00 0.00 2.52
996 1296 8.939201 TTGCTTTTCAATCAACTTAATTGTCA 57.061 26.923 0.00 0.00 39.54 3.58
1038 1338 1.305219 TGCAAGATGCCCAAGTACGC 61.305 55.000 0.00 0.00 44.23 4.42
1127 1431 1.899142 TCTGCGGTGCTGCCATATATA 59.101 47.619 0.00 0.00 36.97 0.86
1128 1432 0.686789 TCTGCGGTGCTGCCATATAT 59.313 50.000 0.00 0.00 36.97 0.86
1129 1433 0.249868 GTCTGCGGTGCTGCCATATA 60.250 55.000 0.00 0.00 36.97 0.86
1299 1622 1.105457 CACTGTATCCGTCGGGGTAA 58.895 55.000 12.29 0.00 37.00 2.85
1364 1690 1.749258 GCCCTGACCACGGATTTCC 60.749 63.158 0.00 0.00 0.00 3.13
1507 1848 0.976641 TCCGTCTTCATGAACCAGCT 59.023 50.000 3.38 0.00 0.00 4.24
1508 1849 1.363744 CTCCGTCTTCATGAACCAGC 58.636 55.000 3.38 0.00 0.00 4.85
1510 1851 0.976641 AGCTCCGTCTTCATGAACCA 59.023 50.000 3.38 0.00 0.00 3.67
1598 1939 1.080025 GCGACGGCAGGTATATCCC 60.080 63.158 0.00 0.00 39.62 3.85
1715 2068 0.524862 CTGCCCACTGACTTTGATGC 59.475 55.000 0.00 0.00 0.00 3.91
1833 2194 1.431488 CGGGTTGCATGTCCTCGATG 61.431 60.000 0.00 0.00 0.00 3.84
1914 2299 2.941720 GTGCCTCATCATCTCCTTGTTC 59.058 50.000 0.00 0.00 0.00 3.18
2006 2391 0.460987 GACACTCTTGGCATCGAGGG 60.461 60.000 13.19 13.19 36.74 4.30
2034 2427 3.569194 TGTTGGTCAACTAGAGCCAAA 57.431 42.857 13.96 0.00 44.10 3.28
2124 2523 2.044832 GACACTGCCTGCGATCATGC 62.045 60.000 0.00 0.00 34.90 4.06
2126 2525 1.520120 CGACACTGCCTGCGATCAT 60.520 57.895 0.00 0.00 0.00 2.45
2144 2543 5.574891 TCTCTAGTCAAGCAATCAGAGAC 57.425 43.478 0.00 0.00 34.96 3.36
2164 2563 6.886459 ACAATAAAGACACCAATACATGCTCT 59.114 34.615 0.00 0.00 0.00 4.09
2165 2564 7.088589 ACAATAAAGACACCAATACATGCTC 57.911 36.000 0.00 0.00 0.00 4.26
2206 2605 6.746364 GCAATCAGACTCTTTCATGTTTCATC 59.254 38.462 0.00 0.00 0.00 2.92
2236 2635 2.370349 AGACAGCAGTACACGCTCTAT 58.630 47.619 6.83 0.00 37.72 1.98
2237 2636 1.822506 AGACAGCAGTACACGCTCTA 58.177 50.000 6.83 0.00 37.72 2.43
2241 2640 5.968387 ATATAAAAGACAGCAGTACACGC 57.032 39.130 0.00 0.00 0.00 5.34
2259 2665 7.831193 GGACGGAGGGAGTACAAACTATATATA 59.169 40.741 0.00 0.00 35.56 0.86
2271 2677 2.077687 TTATGGGACGGAGGGAGTAC 57.922 55.000 0.00 0.00 0.00 2.73
2272 2678 4.687262 ATATTATGGGACGGAGGGAGTA 57.313 45.455 0.00 0.00 0.00 2.59
2273 2679 3.562108 ATATTATGGGACGGAGGGAGT 57.438 47.619 0.00 0.00 0.00 3.85
2274 2680 5.269991 TCTTATATTATGGGACGGAGGGAG 58.730 45.833 0.00 0.00 0.00 4.30
2275 2681 5.279562 TCTTATATTATGGGACGGAGGGA 57.720 43.478 0.00 0.00 0.00 4.20
2276 2682 5.623824 CGTTCTTATATTATGGGACGGAGGG 60.624 48.000 0.00 0.00 0.00 4.30
2277 2683 5.047519 ACGTTCTTATATTATGGGACGGAGG 60.048 44.000 13.18 0.00 0.00 4.30
2278 2684 6.022163 ACGTTCTTATATTATGGGACGGAG 57.978 41.667 13.18 0.00 0.00 4.63
2279 2685 6.409524 AACGTTCTTATATTATGGGACGGA 57.590 37.500 0.00 0.00 0.00 4.69
2280 2686 7.486802 AAAACGTTCTTATATTATGGGACGG 57.513 36.000 0.00 1.76 0.00 4.79
2281 2687 8.605746 TGAAAAACGTTCTTATATTATGGGACG 58.394 33.333 0.00 9.33 0.00 4.79
2309 2715 9.044150 CCGTCCCATAATATAAGAACGTTTTTA 57.956 33.333 13.02 13.02 0.00 1.52
2310 2716 7.769970 TCCGTCCCATAATATAAGAACGTTTTT 59.230 33.333 9.22 9.22 0.00 1.94
2311 2717 7.274447 TCCGTCCCATAATATAAGAACGTTTT 58.726 34.615 0.46 0.00 0.00 2.43
2312 2718 6.819284 TCCGTCCCATAATATAAGAACGTTT 58.181 36.000 0.46 0.00 0.00 3.60
2313 2719 6.409524 TCCGTCCCATAATATAAGAACGTT 57.590 37.500 0.00 0.00 0.00 3.99
2314 2720 5.047519 CCTCCGTCCCATAATATAAGAACGT 60.048 44.000 0.00 0.00 0.00 3.99
2315 2721 5.408356 CCTCCGTCCCATAATATAAGAACG 58.592 45.833 0.00 0.00 0.00 3.95
2316 2722 5.482878 TCCCTCCGTCCCATAATATAAGAAC 59.517 44.000 0.00 0.00 0.00 3.01
2317 2723 5.657446 TCCCTCCGTCCCATAATATAAGAA 58.343 41.667 0.00 0.00 0.00 2.52
2318 2724 5.222484 ACTCCCTCCGTCCCATAATATAAGA 60.222 44.000 0.00 0.00 0.00 2.10
2319 2725 5.024118 ACTCCCTCCGTCCCATAATATAAG 58.976 45.833 0.00 0.00 0.00 1.73
2320 2726 5.019657 ACTCCCTCCGTCCCATAATATAA 57.980 43.478 0.00 0.00 0.00 0.98
2321 2727 4.687262 ACTCCCTCCGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
2322 2728 3.562108 ACTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
2323 2729 3.659195 TCTACTCCCTCCGTCCCATAATA 59.341 47.826 0.00 0.00 0.00 0.98
2324 2730 2.449730 TCTACTCCCTCCGTCCCATAAT 59.550 50.000 0.00 0.00 0.00 1.28
2325 2731 1.854939 TCTACTCCCTCCGTCCCATAA 59.145 52.381 0.00 0.00 0.00 1.90
2326 2732 1.526315 TCTACTCCCTCCGTCCCATA 58.474 55.000 0.00 0.00 0.00 2.74
2327 2733 0.861155 ATCTACTCCCTCCGTCCCAT 59.139 55.000 0.00 0.00 0.00 4.00
2328 2734 0.106167 CATCTACTCCCTCCGTCCCA 60.106 60.000 0.00 0.00 0.00 4.37
2329 2735 0.185416 TCATCTACTCCCTCCGTCCC 59.815 60.000 0.00 0.00 0.00 4.46
2330 2736 2.296073 ATCATCTACTCCCTCCGTCC 57.704 55.000 0.00 0.00 0.00 4.79
2331 2737 4.156922 CACATATCATCTACTCCCTCCGTC 59.843 50.000 0.00 0.00 0.00 4.79
2332 2738 4.082845 CACATATCATCTACTCCCTCCGT 58.917 47.826 0.00 0.00 0.00 4.69
2333 2739 3.445450 CCACATATCATCTACTCCCTCCG 59.555 52.174 0.00 0.00 0.00 4.63
2334 2740 4.678256 TCCACATATCATCTACTCCCTCC 58.322 47.826 0.00 0.00 0.00 4.30
2335 2741 5.954752 TCATCCACATATCATCTACTCCCTC 59.045 44.000 0.00 0.00 0.00 4.30
2336 2742 5.908590 TCATCCACATATCATCTACTCCCT 58.091 41.667 0.00 0.00 0.00 4.20
2337 2743 6.402222 GTTCATCCACATATCATCTACTCCC 58.598 44.000 0.00 0.00 0.00 4.30
2338 2744 6.402222 GGTTCATCCACATATCATCTACTCC 58.598 44.000 0.00 0.00 35.97 3.85
2339 2745 6.014242 TGGGTTCATCCACATATCATCTACTC 60.014 42.308 0.00 0.00 38.11 2.59
2340 2746 5.846164 TGGGTTCATCCACATATCATCTACT 59.154 40.000 0.00 0.00 38.11 2.57
2341 2747 6.114187 TGGGTTCATCCACATATCATCTAC 57.886 41.667 0.00 0.00 38.11 2.59
2354 2760 5.495640 TGGCAAAATTAATTGGGTTCATCC 58.504 37.500 0.39 0.00 0.00 3.51
2363 2769 6.161381 ACTCTGAAGCTGGCAAAATTAATTG 58.839 36.000 0.39 0.00 0.00 2.32
2373 2779 2.659016 CGGACTCTGAAGCTGGCA 59.341 61.111 0.00 0.00 0.00 4.92
2395 2801 8.609478 AACTAAATGTTTACAAGTCAACAACG 57.391 30.769 4.31 0.00 36.50 4.10
2433 2839 3.448660 ACAATCCCTCTTAGGCAAAATGC 59.551 43.478 0.00 0.00 44.08 3.56
2441 2847 6.460676 GCAAATGATCAACAATCCCTCTTAGG 60.461 42.308 0.00 0.00 33.01 2.69
2442 2848 6.095860 TGCAAATGATCAACAATCCCTCTTAG 59.904 38.462 0.00 0.00 33.01 2.18
2444 2850 4.773674 TGCAAATGATCAACAATCCCTCTT 59.226 37.500 0.00 0.00 33.01 2.85
2545 2951 8.766000 AACTAAACTTTTAAAACCACCAGTTG 57.234 30.769 0.00 0.00 39.19 3.16
2548 2954 7.490079 GTGGAACTAAACTTTTAAAACCACCAG 59.510 37.037 16.52 2.37 35.45 4.00
2570 2976 1.133809 CCCTCAACTTCAGGGGTGGA 61.134 60.000 0.00 0.00 46.54 4.02
2579 2985 0.687354 TCTCACAGCCCCTCAACTTC 59.313 55.000 0.00 0.00 0.00 3.01
2583 2989 1.067295 AATGTCTCACAGCCCCTCAA 58.933 50.000 0.00 0.00 0.00 3.02
2594 3000 9.832445 GAGAACCCACTATATAAAAATGTCTCA 57.168 33.333 0.00 0.00 0.00 3.27
2657 3063 4.059459 CGCGCGTGTGTGGTCTTC 62.059 66.667 24.19 0.00 0.00 2.87
2681 3087 1.099879 GCCCTAGCCATGCTGAACAG 61.100 60.000 0.00 0.00 40.10 3.16
2685 3091 4.552365 GCGCCCTAGCCATGCTGA 62.552 66.667 0.00 0.00 40.10 4.26
2696 3102 0.978146 AGTGAAGGTAGATGCGCCCT 60.978 55.000 4.18 4.56 0.00 5.19
2740 3146 5.390613 CCAGTAATCACACAATTTCGGAAC 58.609 41.667 0.00 0.00 0.00 3.62
2749 3155 1.070914 TCCGTGCCAGTAATCACACAA 59.929 47.619 0.00 0.00 33.03 3.33
2750 3156 0.682292 TCCGTGCCAGTAATCACACA 59.318 50.000 0.00 0.00 33.03 3.72
2751 3157 1.337823 ACTCCGTGCCAGTAATCACAC 60.338 52.381 0.00 0.00 33.03 3.82
2767 3173 1.972660 AATACCAGCGCCTCCACTCC 61.973 60.000 2.29 0.00 0.00 3.85
2780 3186 8.372459 AGATTTATCACTGGCGTTATAATACCA 58.628 33.333 8.62 8.62 0.00 3.25
2785 3191 7.709269 GTGAGATTTATCACTGGCGTTATAA 57.291 36.000 0.00 0.00 45.03 0.98
2870 3762 9.344309 GCTAGCAGTAATAACTATAGCACTAAC 57.656 37.037 10.63 0.00 43.34 2.34
2877 3769 9.619316 CTTCAGTGCTAGCAGTAATAACTATAG 57.381 37.037 24.34 8.59 33.48 1.31
2897 3789 1.071699 TCTTAGCGTTTGGGCTTCAGT 59.928 47.619 0.00 0.00 41.39 3.41
2901 3793 3.886123 ACATATCTTAGCGTTTGGGCTT 58.114 40.909 0.00 0.00 41.39 4.35
2902 3794 3.560636 ACATATCTTAGCGTTTGGGCT 57.439 42.857 0.00 0.00 46.88 5.19
2913 3805 6.306199 AGCCCAATGCATGTTACATATCTTA 58.694 36.000 0.00 0.00 44.83 2.10
3089 3982 9.220906 ACTTAGTGGGGATCAACTATTTATGTA 57.779 33.333 0.00 0.00 0.00 2.29
3090 3983 8.102484 ACTTAGTGGGGATCAACTATTTATGT 57.898 34.615 0.00 0.00 0.00 2.29
3091 3984 8.432805 AGACTTAGTGGGGATCAACTATTTATG 58.567 37.037 0.00 0.00 0.00 1.90
3092 3985 8.568617 AGACTTAGTGGGGATCAACTATTTAT 57.431 34.615 0.00 0.00 0.00 1.40
3093 3986 7.989947 AGACTTAGTGGGGATCAACTATTTA 57.010 36.000 0.00 0.00 0.00 1.40
3094 3987 6.893020 AGACTTAGTGGGGATCAACTATTT 57.107 37.500 0.00 0.00 0.00 1.40
3095 3988 7.989947 TTAGACTTAGTGGGGATCAACTATT 57.010 36.000 0.00 0.00 0.00 1.73
3096 3989 8.568617 AATTAGACTTAGTGGGGATCAACTAT 57.431 34.615 0.00 0.00 0.00 2.12
3097 3990 7.844779 AGAATTAGACTTAGTGGGGATCAACTA 59.155 37.037 0.00 0.00 0.00 2.24
3098 3991 6.674419 AGAATTAGACTTAGTGGGGATCAACT 59.326 38.462 0.00 0.00 0.00 3.16
3099 3992 6.890293 AGAATTAGACTTAGTGGGGATCAAC 58.110 40.000 0.00 0.00 0.00 3.18
3100 3993 7.510675 AAGAATTAGACTTAGTGGGGATCAA 57.489 36.000 0.00 0.00 0.00 2.57
3101 3994 7.182026 TGAAAGAATTAGACTTAGTGGGGATCA 59.818 37.037 0.00 0.00 0.00 2.92
3102 3995 7.565680 TGAAAGAATTAGACTTAGTGGGGATC 58.434 38.462 0.00 0.00 0.00 3.36
3103 3996 7.510675 TGAAAGAATTAGACTTAGTGGGGAT 57.489 36.000 0.00 0.00 0.00 3.85
3104 3997 6.945636 TGAAAGAATTAGACTTAGTGGGGA 57.054 37.500 0.00 0.00 0.00 4.81
3105 3998 6.940298 TGTTGAAAGAATTAGACTTAGTGGGG 59.060 38.462 0.00 0.00 0.00 4.96
3106 3999 7.979444 TGTTGAAAGAATTAGACTTAGTGGG 57.021 36.000 0.00 0.00 0.00 4.61
3107 4000 7.965107 GCATGTTGAAAGAATTAGACTTAGTGG 59.035 37.037 0.00 0.00 0.00 4.00
3108 4001 8.506437 TGCATGTTGAAAGAATTAGACTTAGTG 58.494 33.333 0.00 0.00 0.00 2.74
3109 4002 8.621532 TGCATGTTGAAAGAATTAGACTTAGT 57.378 30.769 0.00 0.00 0.00 2.24
3110 4003 8.939929 TCTGCATGTTGAAAGAATTAGACTTAG 58.060 33.333 0.00 0.00 0.00 2.18
3111 4004 8.846943 TCTGCATGTTGAAAGAATTAGACTTA 57.153 30.769 0.00 0.00 0.00 2.24
3112 4005 7.750229 TCTGCATGTTGAAAGAATTAGACTT 57.250 32.000 0.00 0.00 0.00 3.01
3113 4006 7.446625 AGTTCTGCATGTTGAAAGAATTAGACT 59.553 33.333 0.00 0.00 31.73 3.24
3114 4007 7.588512 AGTTCTGCATGTTGAAAGAATTAGAC 58.411 34.615 0.00 0.00 31.73 2.59
3115 4008 7.750229 AGTTCTGCATGTTGAAAGAATTAGA 57.250 32.000 0.00 0.00 31.73 2.10
3118 4011 9.768662 AAAATAGTTCTGCATGTTGAAAGAATT 57.231 25.926 0.00 0.00 31.73 2.17
3119 4012 9.199982 CAAAATAGTTCTGCATGTTGAAAGAAT 57.800 29.630 0.00 0.00 31.73 2.40
3120 4013 8.196771 ACAAAATAGTTCTGCATGTTGAAAGAA 58.803 29.630 0.00 0.00 0.00 2.52
3121 4014 7.715657 ACAAAATAGTTCTGCATGTTGAAAGA 58.284 30.769 0.00 0.00 0.00 2.52
3122 4015 7.935338 ACAAAATAGTTCTGCATGTTGAAAG 57.065 32.000 0.00 0.00 0.00 2.62
3123 4016 7.594758 GCTACAAAATAGTTCTGCATGTTGAAA 59.405 33.333 0.00 0.00 0.00 2.69
3124 4017 7.083858 GCTACAAAATAGTTCTGCATGTTGAA 58.916 34.615 0.00 0.00 0.00 2.69
3125 4018 6.206438 TGCTACAAAATAGTTCTGCATGTTGA 59.794 34.615 0.00 0.00 0.00 3.18
3126 4019 6.306356 GTGCTACAAAATAGTTCTGCATGTTG 59.694 38.462 0.00 0.00 0.00 3.33
3127 4020 6.016360 TGTGCTACAAAATAGTTCTGCATGTT 60.016 34.615 0.00 0.00 0.00 2.71
3128 4021 5.473162 TGTGCTACAAAATAGTTCTGCATGT 59.527 36.000 0.00 0.00 0.00 3.21
3129 4022 5.941733 TGTGCTACAAAATAGTTCTGCATG 58.058 37.500 0.00 0.00 0.00 4.06
3130 4023 6.558009 CATGTGCTACAAAATAGTTCTGCAT 58.442 36.000 0.00 0.00 0.00 3.96
3131 4024 5.619757 GCATGTGCTACAAAATAGTTCTGCA 60.620 40.000 0.00 0.00 38.21 4.41
3132 4025 4.795278 GCATGTGCTACAAAATAGTTCTGC 59.205 41.667 0.00 0.00 38.21 4.26
3133 4026 5.941733 TGCATGTGCTACAAAATAGTTCTG 58.058 37.500 6.55 0.00 42.66 3.02
3134 4027 6.764308 ATGCATGTGCTACAAAATAGTTCT 57.236 33.333 0.00 0.00 42.66 3.01
3135 4028 6.912591 GGTATGCATGTGCTACAAAATAGTTC 59.087 38.462 10.16 0.00 42.66 3.01
3136 4029 6.183360 GGGTATGCATGTGCTACAAAATAGTT 60.183 38.462 10.16 0.00 42.66 2.24
3137 4030 5.299279 GGGTATGCATGTGCTACAAAATAGT 59.701 40.000 10.16 0.00 42.66 2.12
3138 4031 5.299028 TGGGTATGCATGTGCTACAAAATAG 59.701 40.000 10.16 0.00 42.66 1.73
3139 4032 5.196695 TGGGTATGCATGTGCTACAAAATA 58.803 37.500 10.16 0.00 42.66 1.40
3140 4033 4.022603 TGGGTATGCATGTGCTACAAAAT 58.977 39.130 10.16 0.00 42.66 1.82
3141 4034 3.425659 TGGGTATGCATGTGCTACAAAA 58.574 40.909 10.16 0.00 42.66 2.44
3142 4035 3.078891 TGGGTATGCATGTGCTACAAA 57.921 42.857 10.16 0.00 42.66 2.83
3143 4036 2.797177 TGGGTATGCATGTGCTACAA 57.203 45.000 10.16 0.00 42.66 2.41
3144 4037 2.797177 TTGGGTATGCATGTGCTACA 57.203 45.000 10.16 0.00 42.66 2.74
3145 4038 4.654091 AAATTGGGTATGCATGTGCTAC 57.346 40.909 10.16 0.00 42.66 3.58
3146 4039 6.975196 ATTAAATTGGGTATGCATGTGCTA 57.025 33.333 10.16 0.00 42.66 3.49
3147 4040 5.874897 ATTAAATTGGGTATGCATGTGCT 57.125 34.783 10.16 0.00 42.66 4.40
3148 4041 5.816777 ACAATTAAATTGGGTATGCATGTGC 59.183 36.000 10.16 0.00 44.42 4.57
3149 4042 7.011295 GGAACAATTAAATTGGGTATGCATGTG 59.989 37.037 10.16 0.00 44.42 3.21
3150 4043 7.047271 GGAACAATTAAATTGGGTATGCATGT 58.953 34.615 10.16 0.00 44.42 3.21
3151 4044 7.046652 TGGAACAATTAAATTGGGTATGCATG 58.953 34.615 10.16 0.00 44.42 4.06
3152 4045 7.192852 TGGAACAATTAAATTGGGTATGCAT 57.807 32.000 3.79 3.79 44.42 3.96
3153 4046 6.611613 TGGAACAATTAAATTGGGTATGCA 57.388 33.333 0.00 0.00 44.42 3.96
3171 4064 3.871594 CGTTGGACTATTGGAGATGGAAC 59.128 47.826 0.00 0.00 0.00 3.62
3172 4065 3.517901 ACGTTGGACTATTGGAGATGGAA 59.482 43.478 0.00 0.00 0.00 3.53
3173 4066 3.104512 ACGTTGGACTATTGGAGATGGA 58.895 45.455 0.00 0.00 0.00 3.41
3174 4067 3.543680 ACGTTGGACTATTGGAGATGG 57.456 47.619 0.00 0.00 0.00 3.51
3175 4068 5.006153 TGTACGTTGGACTATTGGAGATG 57.994 43.478 0.00 0.00 0.00 2.90
3176 4069 5.601662 CATGTACGTTGGACTATTGGAGAT 58.398 41.667 0.00 0.00 0.00 2.75
3177 4070 4.679639 GCATGTACGTTGGACTATTGGAGA 60.680 45.833 0.00 0.00 0.00 3.71
3178 4071 3.555956 GCATGTACGTTGGACTATTGGAG 59.444 47.826 0.00 0.00 0.00 3.86
3179 4072 3.055747 TGCATGTACGTTGGACTATTGGA 60.056 43.478 0.00 0.00 0.00 3.53
3180 4073 3.266636 TGCATGTACGTTGGACTATTGG 58.733 45.455 0.00 0.00 0.00 3.16
3181 4074 5.753438 AGTATGCATGTACGTTGGACTATTG 59.247 40.000 10.16 0.00 0.00 1.90
3182 4075 5.914033 AGTATGCATGTACGTTGGACTATT 58.086 37.500 10.16 0.00 0.00 1.73
3183 4076 5.302059 AGAGTATGCATGTACGTTGGACTAT 59.698 40.000 10.16 0.00 0.00 2.12
3184 4077 4.643334 AGAGTATGCATGTACGTTGGACTA 59.357 41.667 10.16 0.00 0.00 2.59
3185 4078 3.447586 AGAGTATGCATGTACGTTGGACT 59.552 43.478 10.16 0.44 0.00 3.85
3186 4079 3.782046 AGAGTATGCATGTACGTTGGAC 58.218 45.455 10.16 0.00 0.00 4.02
3187 4080 4.465632 AAGAGTATGCATGTACGTTGGA 57.534 40.909 10.16 0.00 0.00 3.53
3188 4081 4.391830 ACAAAGAGTATGCATGTACGTTGG 59.608 41.667 10.16 0.55 0.00 3.77
3189 4082 5.530519 ACAAAGAGTATGCATGTACGTTG 57.469 39.130 10.16 15.34 0.00 4.10
3190 4083 5.699001 TGAACAAAGAGTATGCATGTACGTT 59.301 36.000 10.16 3.57 0.00 3.99
3191 4084 5.120208 GTGAACAAAGAGTATGCATGTACGT 59.880 40.000 10.16 0.00 0.00 3.57
3192 4085 5.120053 TGTGAACAAAGAGTATGCATGTACG 59.880 40.000 10.16 0.00 0.00 3.67
3193 4086 6.480524 TGTGAACAAAGAGTATGCATGTAC 57.519 37.500 10.16 0.00 0.00 2.90
3194 4087 8.962884 ATATGTGAACAAAGAGTATGCATGTA 57.037 30.769 10.16 0.00 0.00 2.29
3195 4088 7.870509 ATATGTGAACAAAGAGTATGCATGT 57.129 32.000 10.16 0.00 0.00 3.21
3276 4169 8.611757 GCGGGATTTTAAAGATTAATTTTGCAT 58.388 29.630 0.00 0.00 0.00 3.96
3277 4170 7.604164 TGCGGGATTTTAAAGATTAATTTTGCA 59.396 29.630 0.00 0.00 0.00 4.08
3278 4171 7.969314 TGCGGGATTTTAAAGATTAATTTTGC 58.031 30.769 0.00 0.00 0.00 3.68
3279 4172 8.116136 GCTGCGGGATTTTAAAGATTAATTTTG 58.884 33.333 0.00 0.00 0.00 2.44
3280 4173 7.821846 TGCTGCGGGATTTTAAAGATTAATTTT 59.178 29.630 0.00 0.00 0.00 1.82
3281 4174 7.327214 TGCTGCGGGATTTTAAAGATTAATTT 58.673 30.769 0.00 0.00 0.00 1.82
3282 4175 6.872920 TGCTGCGGGATTTTAAAGATTAATT 58.127 32.000 0.00 0.00 0.00 1.40
3283 4176 6.463995 TGCTGCGGGATTTTAAAGATTAAT 57.536 33.333 0.00 0.00 0.00 1.40
3284 4177 5.906113 TGCTGCGGGATTTTAAAGATTAA 57.094 34.783 0.00 0.00 0.00 1.40
3285 4178 5.646606 GTTGCTGCGGGATTTTAAAGATTA 58.353 37.500 0.00 0.00 0.00 1.75
3286 4179 4.494484 GTTGCTGCGGGATTTTAAAGATT 58.506 39.130 0.00 0.00 0.00 2.40
3287 4180 3.427503 CGTTGCTGCGGGATTTTAAAGAT 60.428 43.478 0.00 0.00 0.00 2.40
3288 4181 2.095466 CGTTGCTGCGGGATTTTAAAGA 60.095 45.455 0.00 0.00 0.00 2.52
3289 4182 2.250188 CGTTGCTGCGGGATTTTAAAG 58.750 47.619 0.00 0.00 0.00 1.85
3290 4183 1.667467 GCGTTGCTGCGGGATTTTAAA 60.667 47.619 0.00 0.00 0.00 1.52
3291 4184 0.109504 GCGTTGCTGCGGGATTTTAA 60.110 50.000 0.00 0.00 0.00 1.52
3292 4185 1.504446 GCGTTGCTGCGGGATTTTA 59.496 52.632 0.00 0.00 0.00 1.52
3293 4186 2.258286 GCGTTGCTGCGGGATTTT 59.742 55.556 0.00 0.00 0.00 1.82
3304 4197 4.829518 GATTTCCCCGCGCGTTGC 62.830 66.667 29.95 6.67 41.47 4.17
3305 4198 3.427425 TGATTTCCCCGCGCGTTG 61.427 61.111 29.95 19.04 0.00 4.10
3306 4199 3.428282 GTGATTTCCCCGCGCGTT 61.428 61.111 29.95 5.66 0.00 4.84
3308 4201 3.726595 TAGGTGATTTCCCCGCGCG 62.727 63.158 25.67 25.67 0.00 6.86
3309 4202 1.887707 CTAGGTGATTTCCCCGCGC 60.888 63.158 0.00 0.00 0.00 6.86
3310 4203 0.107848 AACTAGGTGATTTCCCCGCG 60.108 55.000 0.00 0.00 0.00 6.46
3311 4204 1.065709 TGAACTAGGTGATTTCCCCGC 60.066 52.381 0.00 0.00 0.00 6.13
3312 4205 3.560636 ATGAACTAGGTGATTTCCCCG 57.439 47.619 0.00 0.00 0.00 5.73
3313 4206 6.649557 CGTAATATGAACTAGGTGATTTCCCC 59.350 42.308 0.00 0.00 0.00 4.81
3314 4207 7.439381 TCGTAATATGAACTAGGTGATTTCCC 58.561 38.462 0.00 0.00 0.00 3.97
3315 4208 8.142551 ACTCGTAATATGAACTAGGTGATTTCC 58.857 37.037 0.00 0.00 0.00 3.13
3318 4211 9.352191 ACTACTCGTAATATGAACTAGGTGATT 57.648 33.333 0.00 0.00 0.00 2.57
3319 4212 8.921353 ACTACTCGTAATATGAACTAGGTGAT 57.079 34.615 0.00 0.00 0.00 3.06
3320 4213 9.265901 GTACTACTCGTAATATGAACTAGGTGA 57.734 37.037 0.00 0.00 0.00 4.02
3321 4214 9.270640 AGTACTACTCGTAATATGAACTAGGTG 57.729 37.037 0.00 0.00 0.00 4.00
3322 4215 9.844257 AAGTACTACTCGTAATATGAACTAGGT 57.156 33.333 0.00 0.00 0.00 3.08
3354 4247 7.598493 GGTATACCGTTGTCTTTGTAGTTGTTA 59.402 37.037 6.06 0.00 0.00 2.41
3363 4256 2.635714 GGGGGTATACCGTTGTCTTTG 58.364 52.381 15.80 0.00 41.60 2.77
3375 4268 5.357596 GTCTTTTGTATTTTGCGGGGGTATA 59.642 40.000 0.00 0.00 0.00 1.47
3386 4279 9.762933 ATTGCATACTGTTGTCTTTTGTATTTT 57.237 25.926 0.00 0.00 0.00 1.82
3389 4282 7.176515 TGGATTGCATACTGTTGTCTTTTGTAT 59.823 33.333 0.00 0.00 0.00 2.29
3390 4283 6.488344 TGGATTGCATACTGTTGTCTTTTGTA 59.512 34.615 0.00 0.00 0.00 2.41
3392 4285 5.771469 TGGATTGCATACTGTTGTCTTTTG 58.229 37.500 0.00 0.00 0.00 2.44
3395 4288 3.441572 GCTGGATTGCATACTGTTGTCTT 59.558 43.478 0.00 0.00 0.00 3.01
3397 4290 3.012518 AGCTGGATTGCATACTGTTGTC 58.987 45.455 0.00 0.00 34.99 3.18
3398 4291 3.077484 AGCTGGATTGCATACTGTTGT 57.923 42.857 0.00 0.00 34.99 3.32
3399 4292 5.762825 ATTAGCTGGATTGCATACTGTTG 57.237 39.130 0.00 0.00 34.99 3.33
3400 4293 9.573166 TTTATATTAGCTGGATTGCATACTGTT 57.427 29.630 0.00 0.00 34.99 3.16
3406 4299 9.533253 GTTGTTTTTATATTAGCTGGATTGCAT 57.467 29.630 0.00 0.00 34.99 3.96
3407 4300 8.526978 TGTTGTTTTTATATTAGCTGGATTGCA 58.473 29.630 0.00 0.00 34.99 4.08
3408 4301 8.807581 GTGTTGTTTTTATATTAGCTGGATTGC 58.192 33.333 0.00 0.00 0.00 3.56
3424 4319 7.496747 ACACCATGCTATTAAGTGTTGTTTTT 58.503 30.769 0.00 0.00 38.47 1.94
3425 4320 7.049799 ACACCATGCTATTAAGTGTTGTTTT 57.950 32.000 0.00 0.00 38.47 2.43
3497 4392 8.043710 GTGGAGATAAATTAGATAGTGGGGATG 58.956 40.741 0.00 0.00 0.00 3.51
3508 4403 6.359804 AGCTTGCATGTGGAGATAAATTAGA 58.640 36.000 1.14 0.00 0.00 2.10
3526 4421 0.817229 GGCTGAGGTGGATAGCTTGC 60.817 60.000 0.00 0.00 37.58 4.01
3529 4424 0.763652 CATGGCTGAGGTGGATAGCT 59.236 55.000 0.00 0.00 37.58 3.32
3562 4457 4.189231 CCTCGAACCAAAACTATAGGTGG 58.811 47.826 14.58 14.58 35.42 4.61
3578 4474 0.324614 ATGTGTGCATGGACCTCGAA 59.675 50.000 15.34 0.00 33.37 3.71
3591 4487 3.712162 CGTAGCAGAAACTGATGTGTG 57.288 47.619 2.81 0.00 32.44 3.82
3611 4520 0.179156 CAGATTCGCACAACCCATGC 60.179 55.000 0.00 0.00 39.81 4.06
3630 4539 9.506018 AATTAATTGATGGGCATTTAATTAGCC 57.494 29.630 0.00 5.80 43.80 3.93
3667 4576 7.443302 TCAGTGGAGAAGATGAATAGGATTT 57.557 36.000 0.00 0.00 0.00 2.17
3677 4586 5.188434 TGCCTTTATTCAGTGGAGAAGATG 58.812 41.667 0.00 0.00 0.00 2.90
3690 4599 3.961480 ACAAAAGGGCTGCCTTTATTC 57.039 42.857 16.93 0.00 38.84 1.75
3727 4636 8.702819 TCTGCATATGGGAGAGAAATCATATAG 58.297 37.037 4.56 0.00 39.28 1.31
3748 4657 4.213270 CCAAGTAAAAGACGAACATCTGCA 59.787 41.667 0.00 0.00 0.00 4.41
3749 4658 4.213482 ACCAAGTAAAAGACGAACATCTGC 59.787 41.667 0.00 0.00 0.00 4.26
3788 5646 1.661617 CGTTTCGGCGAACATAATGGA 59.338 47.619 23.64 1.46 0.00 3.41
3800 5658 2.803713 GCTAGCTGCTCGTTTCGGC 61.804 63.158 4.91 0.00 38.95 5.54
3814 5672 3.127895 GTCACTGAGACACCAGTAGCTAG 59.872 52.174 0.00 0.00 44.87 3.42
3817 5675 2.355717 GTCACTGAGACACCAGTAGC 57.644 55.000 0.15 0.00 44.87 3.58
3885 5743 4.350346 CATCAGATGAGTCGAGAACACTC 58.650 47.826 4.11 0.00 40.75 3.51
3894 5752 1.137675 TCCCTTGCATCAGATGAGTCG 59.862 52.381 15.12 0.00 0.00 4.18
3895 5753 2.559440 GTCCCTTGCATCAGATGAGTC 58.441 52.381 15.12 0.00 0.00 3.36
3896 5754 1.134580 CGTCCCTTGCATCAGATGAGT 60.135 52.381 15.12 0.00 0.00 3.41
3897 5755 1.134580 ACGTCCCTTGCATCAGATGAG 60.135 52.381 15.12 3.42 0.00 2.90
3919 5777 1.565305 CGATCCTTAGCTGCAGACAC 58.435 55.000 20.43 0.00 0.00 3.67
3928 5786 1.134371 ACAGGAAAGCCGATCCTTAGC 60.134 52.381 0.00 0.00 45.06 3.09
3939 5797 1.200948 GGCATGTCTTCACAGGAAAGC 59.799 52.381 0.00 0.00 36.34 3.51
3942 5800 1.421268 ACAGGCATGTCTTCACAGGAA 59.579 47.619 0.00 0.00 36.34 3.36
3943 5801 1.059098 ACAGGCATGTCTTCACAGGA 58.941 50.000 0.00 0.00 36.34 3.86
3944 5802 1.162698 CACAGGCATGTCTTCACAGG 58.837 55.000 0.00 0.00 37.65 4.00
3945 5803 2.174363 TCACAGGCATGTCTTCACAG 57.826 50.000 0.00 0.00 37.65 3.66
3946 5804 2.104622 TCTTCACAGGCATGTCTTCACA 59.895 45.455 0.00 0.00 37.65 3.58
3947 5805 2.481952 GTCTTCACAGGCATGTCTTCAC 59.518 50.000 0.00 0.00 37.65 3.18
3948 5806 2.104622 TGTCTTCACAGGCATGTCTTCA 59.895 45.455 0.00 0.00 37.65 3.02
3949 5807 2.771089 TGTCTTCACAGGCATGTCTTC 58.229 47.619 0.00 0.00 37.65 2.87
3950 5808 2.880890 GTTGTCTTCACAGGCATGTCTT 59.119 45.455 0.00 0.00 37.65 3.01
3951 5809 2.158769 TGTTGTCTTCACAGGCATGTCT 60.159 45.455 0.00 0.00 37.65 3.41
3952 5810 2.031682 GTGTTGTCTTCACAGGCATGTC 60.032 50.000 0.00 0.00 37.65 3.06
3953 5811 1.949525 GTGTTGTCTTCACAGGCATGT 59.050 47.619 0.00 0.00 41.57 3.21
3954 5812 1.948834 TGTGTTGTCTTCACAGGCATG 59.051 47.619 0.00 0.00 40.26 4.06
3955 5813 2.346766 TGTGTTGTCTTCACAGGCAT 57.653 45.000 0.00 0.00 40.26 4.40
3988 5846 4.893829 TGCACCCAAGTAGTACACAATA 57.106 40.909 2.52 0.00 0.00 1.90
3990 5848 3.326588 AGATGCACCCAAGTAGTACACAA 59.673 43.478 2.52 0.00 0.00 3.33
3997 5855 0.179073 CCCGAGATGCACCCAAGTAG 60.179 60.000 0.00 0.00 0.00 2.57
4013 5871 6.943006 TGTAAGCTAGATTACTCGGTTCCCG 61.943 48.000 26.38 0.00 39.54 5.14


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.