Multiple sequence alignment - TraesCS2D01G544200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G544200 chr2D 100.000 3610 0 0 1 3610 621551066 621547457 0.000000e+00 6667.0
1 TraesCS2D01G544200 chr2D 100.000 700 0 0 3904 4603 621547163 621546464 0.000000e+00 1293.0
2 TraesCS2D01G544200 chr2D 91.262 206 17 1 1 205 499308834 499309039 3.510000e-71 279.0
3 TraesCS2D01G544200 chr2D 90.798 163 14 1 4441 4602 455529333 455529495 2.790000e-52 217.0
4 TraesCS2D01G544200 chr2D 77.591 357 36 20 391 740 499309066 499309385 4.730000e-40 176.0
5 TraesCS2D01G544200 chr2D 87.500 120 13 2 2248 2366 166797522 166797640 2.230000e-28 137.0
6 TraesCS2D01G544200 chr2D 81.481 162 19 6 1908 2067 621548847 621548695 6.250000e-24 122.0
7 TraesCS2D01G544200 chr2D 84.348 115 7 4 1949 2061 166797535 166797640 8.150000e-18 102.0
8 TraesCS2D01G544200 chr2B 91.400 3663 195 56 1 3606 762506888 762503289 0.000000e+00 4909.0
9 TraesCS2D01G544200 chr2B 91.086 359 25 4 3904 4256 762503239 762502882 3.220000e-131 479.0
10 TraesCS2D01G544200 chr2B 86.120 317 22 6 2069 2364 762505001 762504686 5.750000e-84 322.0
11 TraesCS2D01G544200 chr2B 85.449 323 22 11 1898 2218 762504839 762504540 3.460000e-81 313.0
12 TraesCS2D01G544200 chr2B 79.673 428 64 16 1 408 762915672 762915248 2.100000e-73 287.0
13 TraesCS2D01G544200 chr2B 76.481 574 83 32 13 557 762789726 762789176 9.820000e-67 265.0
14 TraesCS2D01G544200 chr2B 77.590 473 66 25 1 439 762885290 762884824 2.750000e-62 250.0
15 TraesCS2D01G544200 chr2B 78.272 405 64 17 1 385 762800602 762800202 5.950000e-59 239.0
16 TraesCS2D01G544200 chr2B 84.549 233 25 6 2 223 762793589 762793357 2.160000e-53 220.0
17 TraesCS2D01G544200 chr2B 88.406 138 16 0 2235 2372 762504974 762504837 2.850000e-37 167.0
18 TraesCS2D01G544200 chr2B 83.721 172 22 6 4263 4432 536644231 536644398 1.710000e-34 158.0
19 TraesCS2D01G544200 chr2B 82.184 174 30 1 4261 4434 541795582 541795754 1.030000e-31 148.0
20 TraesCS2D01G544200 chr2B 81.871 171 26 5 4261 4430 447948800 447948634 6.210000e-29 139.0
21 TraesCS2D01G544200 chr2B 83.333 162 16 6 1908 2067 762504684 762504532 6.210000e-29 139.0
22 TraesCS2D01G544200 chr2B 78.082 146 29 3 4262 4407 358374939 358375081 6.340000e-14 89.8
23 TraesCS2D01G544200 chr2A 91.762 2707 124 32 924 3608 753255163 753252534 0.000000e+00 3672.0
24 TraesCS2D01G544200 chr2A 86.889 778 55 19 1 764 753255937 753255193 0.000000e+00 828.0
25 TraesCS2D01G544200 chr2A 88.587 368 29 5 3904 4260 753252486 753252121 7.070000e-118 435.0
26 TraesCS2D01G544200 chr2A 78.049 451 69 20 1 431 753402703 753402263 1.640000e-64 257.0
27 TraesCS2D01G544200 chr2A 87.903 124 12 3 2097 2218 515483544 515483422 4.800000e-30 143.0
28 TraesCS2D01G544200 chr2A 83.436 163 14 8 2220 2372 753254195 753254036 6.210000e-29 139.0
29 TraesCS2D01G544200 chr2A 82.099 162 18 6 1908 2067 753253883 753253731 1.340000e-25 128.0
30 TraesCS2D01G544200 chr2A 84.496 129 17 3 2243 2369 515483544 515483417 1.740000e-24 124.0
31 TraesCS2D01G544200 chr2A 91.304 69 4 2 1949 2016 515483525 515483458 4.900000e-15 93.5
32 TraesCS2D01G544200 chr4A 89.806 206 20 1 1 205 153777452 153777247 3.530000e-66 263.0
33 TraesCS2D01G544200 chr7D 89.634 164 16 1 4439 4602 204521146 204521308 1.680000e-49 207.0
34 TraesCS2D01G544200 chr7D 89.091 165 17 1 4438 4602 254237497 254237660 2.170000e-48 204.0
35 TraesCS2D01G544200 chr7D 87.500 104 9 4 2273 2375 63466786 63466686 2.910000e-22 117.0
36 TraesCS2D01G544200 chr7D 78.736 174 31 6 4261 4432 204520902 204521071 1.350000e-20 111.0
37 TraesCS2D01G544200 chr7D 84.211 114 16 2 1801 1914 63466920 63466809 4.870000e-20 110.0
38 TraesCS2D01G544200 chr5B 89.091 165 18 0 4439 4603 493331749 493331913 6.040000e-49 206.0
39 TraesCS2D01G544200 chr5A 88.957 163 18 0 4440 4602 608992453 608992615 7.810000e-48 202.0
40 TraesCS2D01G544200 chr4B 88.623 167 17 2 4438 4602 363958932 363959098 7.810000e-48 202.0
41 TraesCS2D01G544200 chr3B 89.024 164 17 1 4439 4602 132644159 132644321 7.810000e-48 202.0
42 TraesCS2D01G544200 chr3B 88.485 165 19 0 4438 4602 382245563 382245399 2.810000e-47 200.0
43 TraesCS2D01G544200 chr3B 89.600 125 11 2 2095 2218 754027332 754027455 1.710000e-34 158.0
44 TraesCS2D01G544200 chr3B 80.226 177 25 7 4261 4432 439106084 439106255 1.740000e-24 124.0
45 TraesCS2D01G544200 chr1D 88.415 164 19 0 4439 4602 312717437 312717600 1.010000e-46 198.0
46 TraesCS2D01G544200 chr1D 86.034 179 20 5 2267 2444 415318184 415318358 2.190000e-43 187.0
47 TraesCS2D01G544200 chr1D 83.721 172 26 2 4261 4432 338806850 338806681 1.330000e-35 161.0
48 TraesCS2D01G544200 chr1D 86.154 65 7 2 1953 2016 415318182 415318245 8.260000e-08 69.4
49 TraesCS2D01G544200 chr1B 82.843 204 28 7 2243 2444 561622882 561623080 4.730000e-40 176.0
50 TraesCS2D01G544200 chr3A 85.366 123 16 2 2097 2218 136519551 136519672 4.830000e-25 126.0
51 TraesCS2D01G544200 chr6D 78.977 176 31 5 4261 4434 307558419 307558590 1.050000e-21 115.0
52 TraesCS2D01G544200 chr1A 87.629 97 10 2 2112 2207 6019624 6019719 1.350000e-20 111.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G544200 chr2D 621546464 621551066 4602 True 2694.000000 6667 93.827000 1 4603 3 chr2D.!!$R1 4602
1 TraesCS2D01G544200 chr2D 499308834 499309385 551 False 227.500000 279 84.426500 1 740 2 chr2D.!!$F3 739
2 TraesCS2D01G544200 chr2B 762502882 762506888 4006 True 1054.833333 4909 87.632333 1 4256 6 chr2B.!!$R5 4255
3 TraesCS2D01G544200 chr2B 762789176 762793589 4413 True 242.500000 265 80.515000 2 557 2 chr2B.!!$R6 555
4 TraesCS2D01G544200 chr2A 753252121 753255937 3816 True 1040.400000 3672 86.554600 1 4260 5 chr2A.!!$R3 4259

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
23 25 1.675720 AACAACAGCCCAGCAACCAC 61.676 55.0 0.00 0.00 0.00 4.16 F
1030 2627 0.243907 CGTCCGCTTTCTCTTCTCCA 59.756 55.0 0.00 0.00 0.00 3.86 F
1563 3729 0.737715 GTTCGCCGCAAGATGAGAGT 60.738 55.0 0.00 0.00 43.02 3.24 F
1827 4295 1.164041 GCGGTGCTGTGTTTAGTGGT 61.164 55.0 0.00 0.00 0.00 4.16 F
3427 5918 1.625511 CCTTCTCCAGGCAAAGCTTT 58.374 50.0 5.69 5.69 35.13 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1300 3155 0.036858 GCTGTGAAGGTGGGAGAGAC 60.037 60.000 0.00 0.0 0.00 3.36 R
2613 5089 0.838554 TGGGAACATTGAGGGTCGGA 60.839 55.000 0.00 0.0 33.40 4.55 R
3388 5879 3.055312 AGGGGAAAACGAGGATGTAGAAC 60.055 47.826 0.00 0.0 0.00 3.01 R
3461 5952 3.243501 GCAGTTGAGAGCTCAGATAGGAG 60.244 52.174 17.77 0.0 41.13 3.69 R
4318 6823 0.036294 AGGCCTCCTTTGTAAGTCGC 60.036 55.000 0.00 0.0 0.00 5.19 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 25 1.675720 AACAACAGCCCAGCAACCAC 61.676 55.000 0.00 0.00 0.00 4.16
84 97 6.072838 TGCAAATGTCTTGTCTCTGAATTCTC 60.073 38.462 7.05 0.00 0.00 2.87
385 432 5.687970 CGTCTAGGGATCTCTCAAGGAACTA 60.688 48.000 0.00 0.00 38.49 2.24
389 436 5.594777 AGGGATCTCTCAAGGAACTAAAGA 58.405 41.667 0.00 0.00 38.49 2.52
396 443 5.248640 TCTCAAGGAACTAAAGATGCAAGG 58.751 41.667 0.00 0.00 38.49 3.61
411 461 1.957668 CAAGGCCATCATCGTCATCA 58.042 50.000 5.01 0.00 0.00 3.07
441 491 4.576873 CACGAAGATCTCCACTAGCTAGAA 59.423 45.833 27.45 10.84 0.00 2.10
447 497 9.509956 GAAGATCTCCACTAGCTAGAATACTTA 57.490 37.037 27.45 6.60 0.00 2.24
452 502 9.422681 TCTCCACTAGCTAGAATACTTAACAAT 57.577 33.333 27.45 0.00 0.00 2.71
479 529 2.103263 GGGTATCACTTCTAGGTGGCAG 59.897 54.545 0.00 0.00 37.75 4.85
480 530 2.766828 GGTATCACTTCTAGGTGGCAGT 59.233 50.000 0.00 0.00 37.75 4.40
481 531 3.958798 GGTATCACTTCTAGGTGGCAGTA 59.041 47.826 0.00 0.00 37.75 2.74
486 536 4.286032 TCACTTCTAGGTGGCAGTACATTT 59.714 41.667 0.00 0.00 37.75 2.32
488 538 3.906720 TCTAGGTGGCAGTACATTTCC 57.093 47.619 0.00 0.00 0.00 3.13
495 551 3.435671 GTGGCAGTACATTTCCACTACAC 59.564 47.826 14.56 0.00 44.09 2.90
496 552 3.007635 GGCAGTACATTTCCACTACACC 58.992 50.000 0.00 0.00 0.00 4.16
511 567 5.344743 ACTACACCAGTGACCTGAATATG 57.655 43.478 4.48 0.00 41.50 1.78
520 577 7.092891 ACCAGTGACCTGAATATGAGTTTATCA 60.093 37.037 0.00 0.00 41.50 2.15
559 618 5.902613 TGGAACATGATCCAATGAAAGAC 57.097 39.130 21.41 0.00 46.36 3.01
564 624 7.543520 GGAACATGATCCAATGAAAGACTTTTC 59.456 37.037 16.67 0.00 39.97 2.29
579 639 8.438676 AAAGACTTTTCTATGATATCCAACGG 57.561 34.615 0.00 0.00 0.00 4.44
589 649 9.046846 TCTATGATATCCAACGGAAGGATTATT 57.953 33.333 10.23 0.00 43.21 1.40
590 650 9.672673 CTATGATATCCAACGGAAGGATTATTT 57.327 33.333 10.23 0.00 43.21 1.40
592 652 8.760980 TGATATCCAACGGAAGGATTATTTTT 57.239 30.769 10.23 0.00 43.21 1.94
593 653 8.629158 TGATATCCAACGGAAGGATTATTTTTG 58.371 33.333 10.23 0.00 43.21 2.44
595 655 6.902771 TCCAACGGAAGGATTATTTTTGAA 57.097 33.333 0.00 0.00 0.00 2.69
596 656 6.919721 TCCAACGGAAGGATTATTTTTGAAG 58.080 36.000 0.00 0.00 0.00 3.02
599 659 6.510879 ACGGAAGGATTATTTTTGAAGGTC 57.489 37.500 0.00 0.00 0.00 3.85
600 660 6.246163 ACGGAAGGATTATTTTTGAAGGTCT 58.754 36.000 0.00 0.00 0.00 3.85
601 661 7.399634 ACGGAAGGATTATTTTTGAAGGTCTA 58.600 34.615 0.00 0.00 0.00 2.59
602 662 7.886446 ACGGAAGGATTATTTTTGAAGGTCTAA 59.114 33.333 0.00 0.00 0.00 2.10
603 663 8.182227 CGGAAGGATTATTTTTGAAGGTCTAAC 58.818 37.037 0.00 0.00 0.00 2.34
604 664 8.182227 GGAAGGATTATTTTTGAAGGTCTAACG 58.818 37.037 0.00 0.00 0.00 3.18
605 665 7.625828 AGGATTATTTTTGAAGGTCTAACGG 57.374 36.000 0.00 0.00 0.00 4.44
606 666 7.399634 AGGATTATTTTTGAAGGTCTAACGGA 58.600 34.615 0.00 0.00 0.00 4.69
607 667 7.886446 AGGATTATTTTTGAAGGTCTAACGGAA 59.114 33.333 0.00 0.00 0.00 4.30
608 668 8.182227 GGATTATTTTTGAAGGTCTAACGGAAG 58.818 37.037 0.00 0.00 0.00 3.46
609 669 5.959618 ATTTTTGAAGGTCTAACGGAAGG 57.040 39.130 0.00 0.00 0.00 3.46
610 670 4.693042 TTTTGAAGGTCTAACGGAAGGA 57.307 40.909 0.00 0.00 0.00 3.36
611 671 4.903045 TTTGAAGGTCTAACGGAAGGAT 57.097 40.909 0.00 0.00 0.00 3.24
612 672 4.903045 TTGAAGGTCTAACGGAAGGATT 57.097 40.909 0.00 0.00 0.00 3.01
613 673 6.363167 TTTGAAGGTCTAACGGAAGGATTA 57.637 37.500 0.00 0.00 0.00 1.75
614 674 6.555463 TTGAAGGTCTAACGGAAGGATTAT 57.445 37.500 0.00 0.00 0.00 1.28
615 675 5.914033 TGAAGGTCTAACGGAAGGATTATG 58.086 41.667 0.00 0.00 0.00 1.90
616 676 5.659525 TGAAGGTCTAACGGAAGGATTATGA 59.340 40.000 0.00 0.00 0.00 2.15
617 677 6.326583 TGAAGGTCTAACGGAAGGATTATGAT 59.673 38.462 0.00 0.00 0.00 2.45
618 678 7.507956 TGAAGGTCTAACGGAAGGATTATGATA 59.492 37.037 0.00 0.00 0.00 2.15
634 694 8.993121 GGATTATGATATACAGTTGACCAGTTG 58.007 37.037 0.00 0.00 0.00 3.16
635 695 7.786178 TTATGATATACAGTTGACCAGTTGC 57.214 36.000 0.00 0.00 0.00 4.17
637 697 6.538945 TGATATACAGTTGACCAGTTGCTA 57.461 37.500 0.00 0.00 0.00 3.49
767 850 3.061403 GTGTTATCTTTGCGATCGTACCG 60.061 47.826 17.81 5.80 33.48 4.02
783 866 7.201679 CGATCGTACCGAGATATTTAACCCTAT 60.202 40.741 7.03 0.00 39.91 2.57
899 2494 6.899393 TTTTTACTTCTGATTGGCAGTGAT 57.101 33.333 0.00 0.00 45.14 3.06
900 2495 6.899393 TTTTACTTCTGATTGGCAGTGATT 57.101 33.333 0.00 0.00 45.14 2.57
901 2496 6.500684 TTTACTTCTGATTGGCAGTGATTC 57.499 37.500 0.00 0.00 45.14 2.52
904 2499 4.699257 ACTTCTGATTGGCAGTGATTCTTC 59.301 41.667 0.00 0.00 45.14 2.87
905 2500 4.564782 TCTGATTGGCAGTGATTCTTCT 57.435 40.909 0.00 0.00 45.14 2.85
906 2501 4.914983 TCTGATTGGCAGTGATTCTTCTT 58.085 39.130 0.00 0.00 45.14 2.52
907 2502 4.940046 TCTGATTGGCAGTGATTCTTCTTC 59.060 41.667 0.00 0.00 45.14 2.87
909 2504 5.319453 TGATTGGCAGTGATTCTTCTTCTT 58.681 37.500 0.00 0.00 0.00 2.52
910 2505 5.771666 TGATTGGCAGTGATTCTTCTTCTTT 59.228 36.000 0.00 0.00 0.00 2.52
911 2506 6.266103 TGATTGGCAGTGATTCTTCTTCTTTT 59.734 34.615 0.00 0.00 0.00 2.27
912 2507 6.469782 TTGGCAGTGATTCTTCTTCTTTTT 57.530 33.333 0.00 0.00 0.00 1.94
1020 2617 1.154073 GAGTAGACGCGTCCGCTTT 60.154 57.895 34.08 18.72 39.32 3.51
1030 2627 0.243907 CGTCCGCTTTCTCTTCTCCA 59.756 55.000 0.00 0.00 0.00 3.86
1298 3153 2.042843 CAGTACGCCTCCCCTCCT 60.043 66.667 0.00 0.00 0.00 3.69
1299 3154 2.128507 CAGTACGCCTCCCCTCCTC 61.129 68.421 0.00 0.00 0.00 3.71
1300 3155 3.217743 GTACGCCTCCCCTCCTCG 61.218 72.222 0.00 0.00 0.00 4.63
1345 3214 1.940613 CGAATTTCGAGGGGAATGGTC 59.059 52.381 13.45 0.00 43.74 4.02
1371 3240 7.362056 CCTTCGCTTCATCTAATTTTGAGGAAA 60.362 37.037 8.75 0.00 34.53 3.13
1429 3342 1.067060 TGGTTCGATATCCACGAGCTG 59.933 52.381 0.00 0.00 40.72 4.24
1563 3729 0.737715 GTTCGCCGCAAGATGAGAGT 60.738 55.000 0.00 0.00 43.02 3.24
1712 4180 8.632679 GTTGGATATATTCTGAAGATGGCAAAA 58.367 33.333 7.73 0.00 0.00 2.44
1715 4183 9.852091 GGATATATTCTGAAGATGGCAAAATTC 57.148 33.333 7.73 0.00 0.00 2.17
1821 4289 2.332312 TAGGTGGCGGTGCTGTGTTT 62.332 55.000 0.00 0.00 0.00 2.83
1827 4295 1.164041 GCGGTGCTGTGTTTAGTGGT 61.164 55.000 0.00 0.00 0.00 4.16
1928 4403 2.194271 CCTTCTCCTTAGTTTAGCGCG 58.806 52.381 0.00 0.00 0.00 6.86
2016 4491 5.003804 AGAGATGTGGTTGGTGATGTTTAC 58.996 41.667 0.00 0.00 0.00 2.01
2051 4527 2.997986 GCCTTGTCATTGCCTTTGAATG 59.002 45.455 0.00 0.00 32.91 2.67
2098 4574 4.932200 CCTTCTCCTTAGTTTAGCACACAG 59.068 45.833 0.00 0.00 0.00 3.66
2294 4770 7.825331 TCATTGGTTGGTATAAACTTGAACA 57.175 32.000 0.00 0.00 0.00 3.18
2522 4998 5.936686 ATAATTCCTGATCAACATGAGCG 57.063 39.130 0.00 0.00 35.14 5.03
2613 5089 5.343307 AACAGCTGAAAGACCAAAATGTT 57.657 34.783 23.35 0.00 34.07 2.71
2618 5094 4.537015 CTGAAAGACCAAAATGTTCCGAC 58.463 43.478 0.00 0.00 34.07 4.79
2683 5159 9.880157 TCAGTTATTTCATAGTTGGTACCTAAC 57.120 33.333 14.36 15.00 0.00 2.34
2786 5270 3.260884 ACATTTAGGAGGAAGAAGCGACA 59.739 43.478 0.00 0.00 0.00 4.35
2789 5273 4.553330 TTAGGAGGAAGAAGCGACATTT 57.447 40.909 0.00 0.00 0.00 2.32
2907 5392 4.151121 TGAACTTTGAAGGATGCCATCAA 58.849 39.130 7.06 0.41 39.08 2.57
2910 5395 3.896888 ACTTTGAAGGATGCCATCAACAA 59.103 39.130 7.06 6.67 40.27 2.83
2913 5398 4.724074 TGAAGGATGCCATCAACAATTC 57.276 40.909 7.06 3.53 27.74 2.17
2919 5404 5.954150 AGGATGCCATCAACAATTCTACTTT 59.046 36.000 7.06 0.00 0.00 2.66
2920 5405 6.038356 GGATGCCATCAACAATTCTACTTTG 58.962 40.000 7.06 0.00 0.00 2.77
2929 5418 8.006298 TCAACAATTCTACTTTGGTGATGTTT 57.994 30.769 0.26 0.00 43.83 2.83
2950 5440 7.632721 TGTTTCTTTCGTATGTAAACCTTCAC 58.367 34.615 0.00 0.00 30.75 3.18
2983 5473 9.409312 GTGAATAATATGATCTCTGACACTCTG 57.591 37.037 0.00 0.00 0.00 3.35
2984 5474 9.140874 TGAATAATATGATCTCTGACACTCTGT 57.859 33.333 0.00 0.00 0.00 3.41
3019 5509 7.636150 ACATTCAGCAATGCTAATAGTCTTT 57.364 32.000 7.70 0.00 43.03 2.52
3133 5624 3.475566 TTAGCCTGATTGATCGAAGGG 57.524 47.619 3.31 0.13 0.00 3.95
3388 5879 7.489113 GGCATCAGTTGTGAATTTAAGGTAATG 59.511 37.037 0.00 0.00 35.88 1.90
3401 5892 8.888579 ATTTAAGGTAATGTTCTACATCCTCG 57.111 34.615 0.00 0.00 37.97 4.63
3427 5918 1.625511 CCTTCTCCAGGCAAAGCTTT 58.374 50.000 5.69 5.69 35.13 3.51
3461 5952 5.890424 TCTTCATACAATTTTCCGGTTCC 57.110 39.130 0.00 0.00 0.00 3.62
3608 6099 5.334569 GCAAGATAAGCAAAGTTAACGTCCA 60.335 40.000 0.00 0.00 0.00 4.02
4039 6541 3.312421 CCAGGAAATTATGTACTGCGGTG 59.688 47.826 8.92 0.00 0.00 4.94
4046 6548 1.225855 ATGTACTGCGGTGTGTTGTG 58.774 50.000 8.92 0.00 0.00 3.33
4048 6550 1.011333 GTACTGCGGTGTGTTGTGTT 58.989 50.000 8.92 0.00 0.00 3.32
4065 6567 6.127842 TGTTGTGTTTTTCTCCTGTAGGTTTC 60.128 38.462 0.00 0.00 36.34 2.78
4068 6570 5.355910 GTGTTTTTCTCCTGTAGGTTTCACA 59.644 40.000 0.00 0.00 36.34 3.58
4092 6594 3.181483 GGTACTACCTGGATACCGTTGTG 60.181 52.174 0.00 0.00 34.73 3.33
4094 6596 0.173935 TACCTGGATACCGTTGTGCG 59.826 55.000 0.00 0.00 40.95 5.34
4112 6616 2.110188 TGCGGGTATCCTCTCCTTAGAT 59.890 50.000 0.00 0.00 0.00 1.98
4114 6618 3.056465 GCGGGTATCCTCTCCTTAGATTG 60.056 52.174 0.00 0.00 0.00 2.67
4119 6623 2.119495 TCCTCTCCTTAGATTGTGCCC 58.881 52.381 0.00 0.00 0.00 5.36
4125 6629 2.705658 TCCTTAGATTGTGCCCATCGAT 59.294 45.455 0.00 0.00 0.00 3.59
4130 6634 1.532868 GATTGTGCCCATCGATACTGC 59.467 52.381 0.00 1.55 0.00 4.40
4162 6667 3.947834 CCTTCAGTTCCACACTTTTCAGT 59.052 43.478 0.00 0.00 30.92 3.41
4191 6696 8.688747 TCATTACATTGGTTGCATATCATACA 57.311 30.769 0.00 0.00 0.00 2.29
4192 6697 9.299465 TCATTACATTGGTTGCATATCATACAT 57.701 29.630 0.00 0.00 0.00 2.29
4234 6739 8.019656 AGTAGAACTTGTCCTTTCTTGTTAGA 57.980 34.615 0.00 0.00 33.96 2.10
4235 6740 8.483758 AGTAGAACTTGTCCTTTCTTGTTAGAA 58.516 33.333 0.00 0.00 38.61 2.10
4247 6752 9.720769 CCTTTCTTGTTAGAAAAGATACCACTA 57.279 33.333 0.00 0.00 46.72 2.74
4260 6765 7.741554 AAGATACCACTAAGATTCTGAACCT 57.258 36.000 0.00 0.00 0.00 3.50
4261 6766 7.118496 AGATACCACTAAGATTCTGAACCTG 57.882 40.000 0.00 0.00 0.00 4.00
4262 6767 6.670027 AGATACCACTAAGATTCTGAACCTGT 59.330 38.462 0.00 0.00 0.00 4.00
4263 6768 5.568620 ACCACTAAGATTCTGAACCTGTT 57.431 39.130 0.00 0.00 0.00 3.16
4264 6769 5.308825 ACCACTAAGATTCTGAACCTGTTG 58.691 41.667 0.00 0.00 0.00 3.33
4265 6770 4.697352 CCACTAAGATTCTGAACCTGTTGG 59.303 45.833 0.00 0.00 39.83 3.77
4266 6771 4.697352 CACTAAGATTCTGAACCTGTTGGG 59.303 45.833 0.00 0.00 41.89 4.12
4267 6772 2.887151 AGATTCTGAACCTGTTGGGG 57.113 50.000 0.00 0.00 40.03 4.96
4268 6773 2.348472 AGATTCTGAACCTGTTGGGGA 58.652 47.619 0.00 0.00 40.03 4.81
4269 6774 2.922283 AGATTCTGAACCTGTTGGGGAT 59.078 45.455 0.00 0.00 40.03 3.85
4270 6775 4.111577 AGATTCTGAACCTGTTGGGGATA 58.888 43.478 0.00 0.00 40.03 2.59
4271 6776 4.728860 AGATTCTGAACCTGTTGGGGATAT 59.271 41.667 0.00 0.00 40.03 1.63
4272 6777 4.946160 TTCTGAACCTGTTGGGGATATT 57.054 40.909 0.00 0.00 40.03 1.28
4273 6778 6.389869 AGATTCTGAACCTGTTGGGGATATTA 59.610 38.462 0.00 0.00 40.03 0.98
4274 6779 5.367945 TCTGAACCTGTTGGGGATATTAC 57.632 43.478 0.00 0.00 40.03 1.89
4275 6780 4.165372 TCTGAACCTGTTGGGGATATTACC 59.835 45.833 0.00 0.00 40.03 2.85
4287 6792 5.104259 GGGATATTACCCCATGATGAGAC 57.896 47.826 0.00 0.00 43.81 3.36
4288 6793 4.080299 GGGATATTACCCCATGATGAGACC 60.080 50.000 0.00 0.00 43.81 3.85
4289 6794 4.080299 GGATATTACCCCATGATGAGACCC 60.080 50.000 0.00 0.00 0.00 4.46
4290 6795 2.278657 TTACCCCATGATGAGACCCA 57.721 50.000 0.00 0.00 0.00 4.51
4291 6796 1.507140 TACCCCATGATGAGACCCAC 58.493 55.000 0.00 0.00 0.00 4.61
4292 6797 1.281925 ACCCCATGATGAGACCCACC 61.282 60.000 0.00 0.00 0.00 4.61
4293 6798 1.281199 CCCCATGATGAGACCCACCA 61.281 60.000 0.00 0.00 0.00 4.17
4294 6799 0.848735 CCCATGATGAGACCCACCAT 59.151 55.000 0.00 0.00 0.00 3.55
4295 6800 1.478105 CCCATGATGAGACCCACCATG 60.478 57.143 0.00 0.00 35.61 3.66
4296 6801 1.213678 CCATGATGAGACCCACCATGT 59.786 52.381 0.00 0.00 34.43 3.21
4297 6802 2.569059 CATGATGAGACCCACCATGTC 58.431 52.381 0.00 0.00 32.34 3.06
4298 6803 1.956869 TGATGAGACCCACCATGTCT 58.043 50.000 0.00 0.00 45.47 3.41
4299 6804 1.556451 TGATGAGACCCACCATGTCTG 59.444 52.381 0.00 0.00 42.94 3.51
4308 6813 4.047125 CCATGTCTGGGCCGGGTT 62.047 66.667 13.58 0.00 39.04 4.11
4309 6814 2.675242 CCATGTCTGGGCCGGGTTA 61.675 63.158 13.58 0.00 39.04 2.85
4310 6815 1.153168 CATGTCTGGGCCGGGTTAG 60.153 63.158 13.58 0.00 0.00 2.34
4311 6816 1.306654 ATGTCTGGGCCGGGTTAGA 60.307 57.895 13.58 0.00 0.00 2.10
4312 6817 1.623542 ATGTCTGGGCCGGGTTAGAC 61.624 60.000 13.58 13.06 39.88 2.59
4313 6818 1.988406 GTCTGGGCCGGGTTAGACT 60.988 63.158 13.58 0.00 37.25 3.24
4314 6819 1.987855 TCTGGGCCGGGTTAGACTG 60.988 63.158 13.58 0.00 0.00 3.51
4315 6820 2.203877 TGGGCCGGGTTAGACTGT 60.204 61.111 2.18 0.00 0.00 3.55
4316 6821 1.838073 CTGGGCCGGGTTAGACTGTT 61.838 60.000 3.77 0.00 0.00 3.16
4317 6822 1.376812 GGGCCGGGTTAGACTGTTG 60.377 63.158 2.18 0.00 0.00 3.33
4318 6823 1.376812 GGCCGGGTTAGACTGTTGG 60.377 63.158 2.18 0.00 0.00 3.77
4319 6824 2.038837 GCCGGGTTAGACTGTTGGC 61.039 63.158 2.18 0.00 0.00 4.52
4320 6825 1.740296 CCGGGTTAGACTGTTGGCG 60.740 63.158 0.00 0.00 0.00 5.69
4321 6826 1.290955 CGGGTTAGACTGTTGGCGA 59.709 57.895 0.00 0.00 0.00 5.54
4322 6827 1.012486 CGGGTTAGACTGTTGGCGAC 61.012 60.000 0.00 0.00 0.00 5.19
4323 6828 0.320697 GGGTTAGACTGTTGGCGACT 59.679 55.000 6.41 0.00 0.00 4.18
4324 6829 1.270678 GGGTTAGACTGTTGGCGACTT 60.271 52.381 6.41 0.00 0.00 3.01
4325 6830 2.028748 GGGTTAGACTGTTGGCGACTTA 60.029 50.000 6.41 0.00 0.00 2.24
4326 6831 2.991866 GGTTAGACTGTTGGCGACTTAC 59.008 50.000 6.41 0.00 0.00 2.34
4327 6832 3.553508 GGTTAGACTGTTGGCGACTTACA 60.554 47.826 6.41 0.00 0.00 2.41
4328 6833 2.902705 AGACTGTTGGCGACTTACAA 57.097 45.000 6.41 0.00 0.00 2.41
4329 6834 3.188159 AGACTGTTGGCGACTTACAAA 57.812 42.857 6.41 0.00 0.00 2.83
4330 6835 3.131396 AGACTGTTGGCGACTTACAAAG 58.869 45.455 6.41 0.00 0.00 2.77
4331 6836 2.218603 ACTGTTGGCGACTTACAAAGG 58.781 47.619 6.41 0.00 0.00 3.11
4332 6837 2.158871 ACTGTTGGCGACTTACAAAGGA 60.159 45.455 6.41 0.00 0.00 3.36
4333 6838 2.480419 CTGTTGGCGACTTACAAAGGAG 59.520 50.000 6.41 0.00 0.00 3.69
4334 6839 1.804748 GTTGGCGACTTACAAAGGAGG 59.195 52.381 0.00 0.00 0.00 4.30
4335 6840 0.321298 TGGCGACTTACAAAGGAGGC 60.321 55.000 0.00 0.00 35.97 4.70
4336 6841 1.025113 GGCGACTTACAAAGGAGGCC 61.025 60.000 0.00 0.00 35.90 5.19
4337 6842 0.036294 GCGACTTACAAAGGAGGCCT 60.036 55.000 3.86 3.86 33.87 5.19
4339 6844 2.354403 GCGACTTACAAAGGAGGCCTTA 60.354 50.000 6.77 0.00 43.92 2.69
4340 6845 3.867216 GCGACTTACAAAGGAGGCCTTAA 60.867 47.826 6.77 0.00 43.92 1.85
4341 6846 3.933332 CGACTTACAAAGGAGGCCTTAAG 59.067 47.826 6.77 12.40 43.92 1.85
4342 6847 4.562963 CGACTTACAAAGGAGGCCTTAAGT 60.563 45.833 20.33 20.33 43.92 2.24
4343 6848 5.337009 CGACTTACAAAGGAGGCCTTAAGTA 60.337 44.000 20.27 11.29 43.92 2.24
4344 6849 6.051179 ACTTACAAAGGAGGCCTTAAGTAG 57.949 41.667 19.28 6.93 43.92 2.57
4345 6850 5.045797 ACTTACAAAGGAGGCCTTAAGTAGG 60.046 44.000 19.28 14.43 43.92 3.18
4346 6851 3.257578 ACAAAGGAGGCCTTAAGTAGGT 58.742 45.455 6.77 0.00 43.92 3.08
4347 6852 3.656264 ACAAAGGAGGCCTTAAGTAGGTT 59.344 43.478 6.77 0.00 43.92 3.50
4348 6853 4.105858 ACAAAGGAGGCCTTAAGTAGGTTT 59.894 41.667 6.77 0.00 43.92 3.27
4349 6854 5.311385 ACAAAGGAGGCCTTAAGTAGGTTTA 59.689 40.000 6.77 0.00 43.92 2.01
4350 6855 5.695424 AAGGAGGCCTTAAGTAGGTTTAG 57.305 43.478 6.77 0.00 46.61 1.85
4351 6856 4.956582 AGGAGGCCTTAAGTAGGTTTAGA 58.043 43.478 6.77 0.00 46.61 2.10
4352 6857 5.347978 AGGAGGCCTTAAGTAGGTTTAGAA 58.652 41.667 6.77 0.00 46.61 2.10
4353 6858 5.425862 AGGAGGCCTTAAGTAGGTTTAGAAG 59.574 44.000 6.77 0.00 46.61 2.85
4354 6859 5.424573 GGAGGCCTTAAGTAGGTTTAGAAGA 59.575 44.000 6.77 0.00 46.61 2.87
4355 6860 6.099990 GGAGGCCTTAAGTAGGTTTAGAAGAT 59.900 42.308 6.77 0.00 46.61 2.40
4356 6861 7.127012 AGGCCTTAAGTAGGTTTAGAAGATC 57.873 40.000 0.00 0.00 46.61 2.75
4357 6862 6.672657 AGGCCTTAAGTAGGTTTAGAAGATCA 59.327 38.462 0.00 0.00 46.61 2.92
4358 6863 7.182206 AGGCCTTAAGTAGGTTTAGAAGATCAA 59.818 37.037 0.00 0.00 46.61 2.57
4359 6864 7.496263 GGCCTTAAGTAGGTTTAGAAGATCAAG 59.504 40.741 0.00 0.00 46.61 3.02
4360 6865 8.258708 GCCTTAAGTAGGTTTAGAAGATCAAGA 58.741 37.037 0.97 0.00 46.61 3.02
4365 6870 8.367660 AGTAGGTTTAGAAGATCAAGATGTGA 57.632 34.615 0.00 0.00 41.67 3.58
4366 6871 8.474025 AGTAGGTTTAGAAGATCAAGATGTGAG 58.526 37.037 0.00 0.00 40.43 3.51
4367 6872 7.487822 AGGTTTAGAAGATCAAGATGTGAGA 57.512 36.000 0.00 0.00 40.43 3.27
4368 6873 7.327214 AGGTTTAGAAGATCAAGATGTGAGAC 58.673 38.462 0.00 0.00 40.43 3.36
4369 6874 6.536941 GGTTTAGAAGATCAAGATGTGAGACC 59.463 42.308 0.00 0.00 40.43 3.85
4370 6875 4.751767 AGAAGATCAAGATGTGAGACCC 57.248 45.455 0.00 0.00 40.43 4.46
4371 6876 3.131933 AGAAGATCAAGATGTGAGACCCG 59.868 47.826 0.00 0.00 40.43 5.28
4372 6877 1.759445 AGATCAAGATGTGAGACCCGG 59.241 52.381 0.00 0.00 40.43 5.73
4373 6878 1.757118 GATCAAGATGTGAGACCCGGA 59.243 52.381 0.73 0.00 40.43 5.14
4374 6879 1.186200 TCAAGATGTGAGACCCGGAG 58.814 55.000 0.73 0.00 0.00 4.63
4375 6880 3.543391 ATCAAGATGTGAGACCCGGAGG 61.543 54.545 0.73 0.00 44.85 4.30
4387 6892 2.202570 CGGAGGGCGACTTACGTG 60.203 66.667 0.00 0.00 44.60 4.49
4388 6893 2.183555 GGAGGGCGACTTACGTGG 59.816 66.667 0.00 0.00 44.60 4.94
4389 6894 2.643232 GGAGGGCGACTTACGTGGT 61.643 63.158 0.00 0.00 44.60 4.16
4390 6895 1.445582 GAGGGCGACTTACGTGGTG 60.446 63.158 0.00 0.00 44.60 4.17
4391 6896 1.870055 GAGGGCGACTTACGTGGTGA 61.870 60.000 0.00 0.00 44.60 4.02
4392 6897 1.445582 GGGCGACTTACGTGGTGAG 60.446 63.158 0.00 0.00 44.60 3.51
4393 6898 2.092882 GGCGACTTACGTGGTGAGC 61.093 63.158 0.00 5.31 44.60 4.26
4394 6899 2.092882 GCGACTTACGTGGTGAGCC 61.093 63.158 0.00 0.00 44.60 4.70
4395 6900 1.287815 CGACTTACGTGGTGAGCCA 59.712 57.895 0.00 0.00 43.73 4.75
4419 6924 3.930504 GCCCAAGCCCAGAAGATG 58.069 61.111 0.00 0.00 0.00 2.90
4436 6941 3.557290 GGTATGAGACCCGGCCCC 61.557 72.222 0.00 0.00 43.25 5.80
4437 6942 2.766651 GTATGAGACCCGGCCCCA 60.767 66.667 0.00 0.00 0.00 4.96
4438 6943 2.147387 GTATGAGACCCGGCCCCAT 61.147 63.158 0.00 0.00 0.00 4.00
4439 6944 2.146724 TATGAGACCCGGCCCCATG 61.147 63.158 0.00 0.00 0.00 3.66
4440 6945 2.613576 TATGAGACCCGGCCCCATGA 62.614 60.000 0.00 0.00 0.00 3.07
4441 6946 3.171388 GAGACCCGGCCCCATGAT 61.171 66.667 0.00 0.00 0.00 2.45
4442 6947 3.171388 AGACCCGGCCCCATGATC 61.171 66.667 0.00 0.00 0.00 2.92
4443 6948 4.271016 GACCCGGCCCCATGATCC 62.271 72.222 0.00 0.00 0.00 3.36
4446 6951 4.626081 CCGGCCCCATGATCCGAC 62.626 72.222 17.72 0.00 45.53 4.79
4447 6952 4.626081 CGGCCCCATGATCCGACC 62.626 72.222 12.79 0.00 45.53 4.79
4448 6953 4.271016 GGCCCCATGATCCGACCC 62.271 72.222 0.00 0.00 0.00 4.46
4449 6954 4.626081 GCCCCATGATCCGACCCG 62.626 72.222 0.00 0.00 0.00 5.28
4461 6966 3.642901 CGACCCGGACTCTTGTATG 57.357 57.895 0.73 0.00 0.00 2.39
4462 6967 0.527817 CGACCCGGACTCTTGTATGC 60.528 60.000 0.73 0.00 0.00 3.14
4463 6968 0.179081 GACCCGGACTCTTGTATGCC 60.179 60.000 0.73 0.00 0.00 4.40
4464 6969 1.146263 CCCGGACTCTTGTATGCCC 59.854 63.158 0.73 0.00 0.00 5.36
4465 6970 1.622607 CCCGGACTCTTGTATGCCCA 61.623 60.000 0.73 0.00 0.00 5.36
4466 6971 0.179073 CCGGACTCTTGTATGCCCAG 60.179 60.000 0.00 0.00 0.00 4.45
4467 6972 0.179073 CGGACTCTTGTATGCCCAGG 60.179 60.000 0.00 0.00 0.00 4.45
4468 6973 0.181350 GGACTCTTGTATGCCCAGGG 59.819 60.000 0.00 0.00 0.00 4.45
4482 6987 2.443781 AGGGCCTCGACCTGTGTA 59.556 61.111 0.00 0.00 41.17 2.90
4483 6988 1.001760 AGGGCCTCGACCTGTGTAT 59.998 57.895 0.00 0.00 41.17 2.29
4484 6989 0.260816 AGGGCCTCGACCTGTGTATA 59.739 55.000 0.00 0.00 41.17 1.47
4485 6990 1.133136 AGGGCCTCGACCTGTGTATAT 60.133 52.381 0.00 0.00 41.17 0.86
4486 6991 2.109480 AGGGCCTCGACCTGTGTATATA 59.891 50.000 0.00 0.00 41.17 0.86
4487 6992 2.895404 GGGCCTCGACCTGTGTATATAA 59.105 50.000 0.84 0.00 0.00 0.98
4488 6993 3.322828 GGGCCTCGACCTGTGTATATAAA 59.677 47.826 0.84 0.00 0.00 1.40
4489 6994 4.557205 GGCCTCGACCTGTGTATATAAAG 58.443 47.826 0.00 0.00 0.00 1.85
4490 6995 4.557205 GCCTCGACCTGTGTATATAAAGG 58.443 47.826 4.18 4.18 35.82 3.11
4491 6996 4.038883 GCCTCGACCTGTGTATATAAAGGT 59.961 45.833 10.99 10.99 45.75 3.50
4492 6997 5.529791 CCTCGACCTGTGTATATAAAGGTG 58.470 45.833 15.68 8.53 43.12 4.00
4493 6998 5.301045 CCTCGACCTGTGTATATAAAGGTGA 59.699 44.000 15.68 11.76 43.12 4.02
4494 6999 6.387041 TCGACCTGTGTATATAAAGGTGAG 57.613 41.667 15.68 9.64 43.12 3.51
4495 7000 6.124340 TCGACCTGTGTATATAAAGGTGAGA 58.876 40.000 15.68 11.57 43.12 3.27
4496 7001 6.039047 TCGACCTGTGTATATAAAGGTGAGAC 59.961 42.308 15.68 1.27 43.12 3.36
4497 7002 6.481434 ACCTGTGTATATAAAGGTGAGACC 57.519 41.667 10.43 0.00 41.52 3.85
4498 7003 5.365895 ACCTGTGTATATAAAGGTGAGACCC 59.634 44.000 10.43 0.00 41.52 4.46
4499 7004 5.602978 CCTGTGTATATAAAGGTGAGACCCT 59.397 44.000 0.00 0.00 39.75 4.34
4500 7005 6.463049 CCTGTGTATATAAAGGTGAGACCCTG 60.463 46.154 0.00 0.00 39.75 4.45
4501 7006 5.163343 TGTGTATATAAAGGTGAGACCCTGC 60.163 44.000 0.00 0.00 39.75 4.85
4502 7007 3.753294 ATATAAAGGTGAGACCCTGCG 57.247 47.619 0.00 0.00 39.75 5.18
4503 7008 0.541863 ATAAAGGTGAGACCCTGCGG 59.458 55.000 0.00 0.00 39.75 5.69
4504 7009 2.180159 TAAAGGTGAGACCCTGCGGC 62.180 60.000 0.00 0.00 39.75 6.53
4532 7037 9.150348 GGTTAACCCAATAAACAATCAATTGAG 57.850 33.333 14.16 3.71 40.14 3.02
4533 7038 9.921637 GTTAACCCAATAAACAATCAATTGAGA 57.078 29.630 14.54 0.00 40.14 3.27
4535 7040 6.633856 ACCCAATAAACAATCAATTGAGAGC 58.366 36.000 14.54 0.00 40.14 4.09
4536 7041 6.438425 ACCCAATAAACAATCAATTGAGAGCT 59.562 34.615 14.54 0.00 40.14 4.09
4537 7042 7.615365 ACCCAATAAACAATCAATTGAGAGCTA 59.385 33.333 14.54 4.92 40.14 3.32
4538 7043 8.133627 CCCAATAAACAATCAATTGAGAGCTAG 58.866 37.037 14.54 2.70 40.14 3.42
4539 7044 8.133627 CCAATAAACAATCAATTGAGAGCTAGG 58.866 37.037 14.54 4.10 40.14 3.02
4540 7045 8.680903 CAATAAACAATCAATTGAGAGCTAGGT 58.319 33.333 14.54 0.00 40.14 3.08
4541 7046 8.814038 ATAAACAATCAATTGAGAGCTAGGTT 57.186 30.769 14.54 7.09 40.14 3.50
4542 7047 9.905713 ATAAACAATCAATTGAGAGCTAGGTTA 57.094 29.630 14.54 8.84 40.14 2.85
4543 7048 8.635765 AAACAATCAATTGAGAGCTAGGTTAA 57.364 30.769 14.54 0.00 40.14 2.01
4544 7049 7.856145 ACAATCAATTGAGAGCTAGGTTAAG 57.144 36.000 14.54 0.00 40.14 1.85
4545 7050 6.317391 ACAATCAATTGAGAGCTAGGTTAAGC 59.683 38.462 14.54 0.00 40.23 3.09
4546 7051 6.510799 CAATCAATTGAGAGCTAGGTTAAGCG 60.511 42.308 14.54 0.00 42.58 4.68
4547 7052 8.584384 CAATCAATTGAGAGCTAGGTTAAGCGA 61.584 40.741 14.54 0.00 42.58 4.93
4555 7060 2.797719 GCTAGGTTAAGCGATTCTGCTC 59.202 50.000 0.00 0.00 46.60 4.26
4556 7061 2.317530 AGGTTAAGCGATTCTGCTCC 57.682 50.000 0.00 2.49 46.60 4.70
4557 7062 1.134371 AGGTTAAGCGATTCTGCTCCC 60.134 52.381 0.00 5.23 46.60 4.30
4558 7063 1.300481 GTTAAGCGATTCTGCTCCCC 58.700 55.000 0.00 0.00 46.60 4.81
4559 7064 1.134371 GTTAAGCGATTCTGCTCCCCT 60.134 52.381 0.00 0.00 46.60 4.79
4560 7065 0.465705 TAAGCGATTCTGCTCCCCTG 59.534 55.000 0.00 0.00 46.60 4.45
4561 7066 1.557269 AAGCGATTCTGCTCCCCTGT 61.557 55.000 4.01 0.00 46.60 4.00
4562 7067 0.687757 AGCGATTCTGCTCCCCTGTA 60.688 55.000 0.00 0.00 42.95 2.74
4563 7068 0.178068 GCGATTCTGCTCCCCTGTAA 59.822 55.000 0.00 0.00 0.00 2.41
4564 7069 1.202698 GCGATTCTGCTCCCCTGTAAT 60.203 52.381 0.00 0.00 0.00 1.89
4565 7070 2.760374 CGATTCTGCTCCCCTGTAATC 58.240 52.381 0.00 0.00 0.00 1.75
4566 7071 2.760374 GATTCTGCTCCCCTGTAATCG 58.240 52.381 0.00 0.00 0.00 3.34
4567 7072 1.860641 TTCTGCTCCCCTGTAATCGA 58.139 50.000 0.00 0.00 0.00 3.59
4568 7073 2.088104 TCTGCTCCCCTGTAATCGAT 57.912 50.000 0.00 0.00 0.00 3.59
4569 7074 3.238788 TCTGCTCCCCTGTAATCGATA 57.761 47.619 0.00 0.00 0.00 2.92
4570 7075 2.891580 TCTGCTCCCCTGTAATCGATAC 59.108 50.000 0.00 0.00 34.92 2.24
4571 7076 1.968493 TGCTCCCCTGTAATCGATACC 59.032 52.381 0.00 0.00 33.27 2.73
4572 7077 1.275573 GCTCCCCTGTAATCGATACCC 59.724 57.143 0.00 0.00 33.27 3.69
4573 7078 2.605257 CTCCCCTGTAATCGATACCCA 58.395 52.381 0.00 0.00 33.27 4.51
4574 7079 2.969950 CTCCCCTGTAATCGATACCCAA 59.030 50.000 0.00 0.00 33.27 4.12
4575 7080 3.583086 CTCCCCTGTAATCGATACCCAAT 59.417 47.826 0.00 0.00 33.27 3.16
4576 7081 3.581332 TCCCCTGTAATCGATACCCAATC 59.419 47.826 0.00 0.00 33.27 2.67
4577 7082 3.326588 CCCCTGTAATCGATACCCAATCA 59.673 47.826 0.00 0.00 33.87 2.57
4578 7083 4.202419 CCCCTGTAATCGATACCCAATCAA 60.202 45.833 0.00 0.00 33.87 2.57
4579 7084 5.514834 CCCCTGTAATCGATACCCAATCAAT 60.515 44.000 0.00 0.00 33.87 2.57
4580 7085 6.296202 CCCCTGTAATCGATACCCAATCAATA 60.296 42.308 0.00 0.00 33.87 1.90
4581 7086 6.594159 CCCTGTAATCGATACCCAATCAATAC 59.406 42.308 0.00 0.00 33.87 1.89
4582 7087 7.158697 CCTGTAATCGATACCCAATCAATACA 58.841 38.462 0.00 0.00 33.87 2.29
4583 7088 7.659799 CCTGTAATCGATACCCAATCAATACAA 59.340 37.037 0.00 0.00 33.87 2.41
4584 7089 8.373048 TGTAATCGATACCCAATCAATACAAC 57.627 34.615 0.00 0.00 33.87 3.32
4585 7090 8.208224 TGTAATCGATACCCAATCAATACAACT 58.792 33.333 0.00 0.00 33.87 3.16
4586 7091 7.730364 AATCGATACCCAATCAATACAACTC 57.270 36.000 0.00 0.00 33.87 3.01
4587 7092 6.228616 TCGATACCCAATCAATACAACTCA 57.771 37.500 0.00 0.00 33.87 3.41
4588 7093 6.645306 TCGATACCCAATCAATACAACTCAA 58.355 36.000 0.00 0.00 33.87 3.02
4589 7094 7.106890 TCGATACCCAATCAATACAACTCAAA 58.893 34.615 0.00 0.00 33.87 2.69
4590 7095 7.608376 TCGATACCCAATCAATACAACTCAAAA 59.392 33.333 0.00 0.00 33.87 2.44
4591 7096 7.696453 CGATACCCAATCAATACAACTCAAAAC 59.304 37.037 0.00 0.00 33.87 2.43
4592 7097 6.723298 ACCCAATCAATACAACTCAAAACA 57.277 33.333 0.00 0.00 0.00 2.83
4593 7098 6.748132 ACCCAATCAATACAACTCAAAACAG 58.252 36.000 0.00 0.00 0.00 3.16
4594 7099 6.158598 CCCAATCAATACAACTCAAAACAGG 58.841 40.000 0.00 0.00 0.00 4.00
4595 7100 6.015519 CCCAATCAATACAACTCAAAACAGGA 60.016 38.462 0.00 0.00 0.00 3.86
4596 7101 6.863126 CCAATCAATACAACTCAAAACAGGAC 59.137 38.462 0.00 0.00 0.00 3.85
4597 7102 5.666969 TCAATACAACTCAAAACAGGACG 57.333 39.130 0.00 0.00 0.00 4.79
4598 7103 5.120399 TCAATACAACTCAAAACAGGACGT 58.880 37.500 0.00 0.00 0.00 4.34
4599 7104 6.282167 TCAATACAACTCAAAACAGGACGTA 58.718 36.000 0.00 0.00 0.00 3.57
4600 7105 6.422701 TCAATACAACTCAAAACAGGACGTAG 59.577 38.462 0.00 0.00 0.00 3.51
4601 7106 3.463944 ACAACTCAAAACAGGACGTAGG 58.536 45.455 0.00 0.00 0.00 3.18
4602 7107 3.118519 ACAACTCAAAACAGGACGTAGGT 60.119 43.478 0.00 0.00 0.00 3.08
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
385 432 1.679680 CGATGATGGCCTTGCATCTTT 59.320 47.619 22.00 4.71 37.00 2.52
389 436 0.107066 TGACGATGATGGCCTTGCAT 60.107 50.000 3.32 4.64 0.00 3.96
396 443 2.070262 TCGATGATGACGATGATGGC 57.930 50.000 0.00 0.00 34.85 4.40
447 497 9.408648 CCTAGAAGTGATACCCATAAAATTGTT 57.591 33.333 0.00 0.00 0.00 2.83
452 502 6.634039 GCCACCTAGAAGTGATACCCATAAAA 60.634 42.308 1.10 0.00 40.34 1.52
466 516 4.192317 GGAAATGTACTGCCACCTAGAAG 58.808 47.826 0.00 0.00 0.00 2.85
495 551 7.275183 TGATAAACTCATATTCAGGTCACTGG 58.725 38.462 0.00 0.00 44.99 4.00
496 552 8.771766 CATGATAAACTCATATTCAGGTCACTG 58.228 37.037 0.00 0.00 42.91 3.66
509 565 3.872696 TCGTGTGGCATGATAAACTCAT 58.127 40.909 0.00 0.00 45.78 2.90
511 567 4.591202 CATTCGTGTGGCATGATAAACTC 58.409 43.478 0.00 0.00 0.00 3.01
520 577 0.244450 CCAAAGCATTCGTGTGGCAT 59.756 50.000 0.00 0.00 0.00 4.40
558 617 6.992715 CCTTCCGTTGGATATCATAGAAAAGT 59.007 38.462 4.83 0.00 0.00 2.66
559 618 7.217200 TCCTTCCGTTGGATATCATAGAAAAG 58.783 38.462 4.83 1.78 0.00 2.27
564 624 9.672673 AAATAATCCTTCCGTTGGATATCATAG 57.327 33.333 4.83 0.00 42.93 2.23
579 639 8.182227 CCGTTAGACCTTCAAAAATAATCCTTC 58.818 37.037 0.00 0.00 0.00 3.46
589 649 4.693042 TCCTTCCGTTAGACCTTCAAAA 57.307 40.909 0.00 0.00 0.00 2.44
590 650 4.903045 ATCCTTCCGTTAGACCTTCAAA 57.097 40.909 0.00 0.00 0.00 2.69
592 652 5.659525 TCATAATCCTTCCGTTAGACCTTCA 59.340 40.000 0.00 0.00 0.00 3.02
593 653 6.158023 TCATAATCCTTCCGTTAGACCTTC 57.842 41.667 0.00 0.00 0.00 3.46
595 655 8.968969 GTATATCATAATCCTTCCGTTAGACCT 58.031 37.037 0.00 0.00 0.00 3.85
596 656 8.746530 TGTATATCATAATCCTTCCGTTAGACC 58.253 37.037 0.00 0.00 0.00 3.85
600 660 9.923143 CAACTGTATATCATAATCCTTCCGTTA 57.077 33.333 0.00 0.00 0.00 3.18
601 661 8.647796 TCAACTGTATATCATAATCCTTCCGTT 58.352 33.333 0.00 0.00 0.00 4.44
602 662 8.088981 GTCAACTGTATATCATAATCCTTCCGT 58.911 37.037 0.00 0.00 0.00 4.69
603 663 7.545965 GGTCAACTGTATATCATAATCCTTCCG 59.454 40.741 0.00 0.00 0.00 4.30
604 664 8.375506 TGGTCAACTGTATATCATAATCCTTCC 58.624 37.037 0.00 0.00 0.00 3.46
605 665 9.429359 CTGGTCAACTGTATATCATAATCCTTC 57.571 37.037 0.00 0.00 0.00 3.46
606 666 8.938883 ACTGGTCAACTGTATATCATAATCCTT 58.061 33.333 0.00 0.00 0.00 3.36
607 667 8.497910 ACTGGTCAACTGTATATCATAATCCT 57.502 34.615 0.00 0.00 0.00 3.24
608 668 8.993121 CAACTGGTCAACTGTATATCATAATCC 58.007 37.037 0.00 0.00 0.00 3.01
609 669 8.499162 GCAACTGGTCAACTGTATATCATAATC 58.501 37.037 0.00 0.00 0.00 1.75
610 670 8.213679 AGCAACTGGTCAACTGTATATCATAAT 58.786 33.333 0.00 0.00 0.00 1.28
611 671 7.564793 AGCAACTGGTCAACTGTATATCATAA 58.435 34.615 0.00 0.00 0.00 1.90
612 672 7.124573 AGCAACTGGTCAACTGTATATCATA 57.875 36.000 0.00 0.00 0.00 2.15
613 673 5.994250 AGCAACTGGTCAACTGTATATCAT 58.006 37.500 0.00 0.00 0.00 2.45
614 674 5.420725 AGCAACTGGTCAACTGTATATCA 57.579 39.130 0.00 0.00 0.00 2.15
615 675 5.463724 GCTAGCAACTGGTCAACTGTATATC 59.536 44.000 10.63 0.00 0.00 1.63
616 676 5.360591 GCTAGCAACTGGTCAACTGTATAT 58.639 41.667 10.63 0.00 0.00 0.86
617 677 4.382685 GGCTAGCAACTGGTCAACTGTATA 60.383 45.833 18.24 0.00 0.00 1.47
618 678 3.600388 GCTAGCAACTGGTCAACTGTAT 58.400 45.455 10.63 0.00 0.00 2.29
634 694 2.286294 CACACGAATTGAGATGGCTAGC 59.714 50.000 6.04 6.04 0.00 3.42
635 695 2.286294 GCACACGAATTGAGATGGCTAG 59.714 50.000 0.00 0.00 0.00 3.42
637 697 1.089920 GCACACGAATTGAGATGGCT 58.910 50.000 0.00 0.00 0.00 4.75
881 2476 4.298103 AGAATCACTGCCAATCAGAAGT 57.702 40.909 0.00 0.00 45.72 3.01
889 2484 6.469782 AAAAAGAAGAAGAATCACTGCCAA 57.530 33.333 0.00 0.00 0.00 4.52
910 2505 2.360844 TCACTGCCGTTGTCTCAAAAA 58.639 42.857 0.00 0.00 0.00 1.94
911 2506 2.031258 TCACTGCCGTTGTCTCAAAA 57.969 45.000 0.00 0.00 0.00 2.44
912 2507 2.254546 ATCACTGCCGTTGTCTCAAA 57.745 45.000 0.00 0.00 0.00 2.69
913 2508 2.143122 GAATCACTGCCGTTGTCTCAA 58.857 47.619 0.00 0.00 0.00 3.02
914 2509 1.344438 AGAATCACTGCCGTTGTCTCA 59.656 47.619 0.00 0.00 0.00 3.27
915 2510 2.086054 AGAATCACTGCCGTTGTCTC 57.914 50.000 0.00 0.00 0.00 3.36
916 2511 2.037772 AGAAGAATCACTGCCGTTGTCT 59.962 45.455 0.00 0.00 0.00 3.41
917 2512 2.417719 AGAAGAATCACTGCCGTTGTC 58.582 47.619 0.00 0.00 0.00 3.18
918 2513 2.550830 AGAAGAATCACTGCCGTTGT 57.449 45.000 0.00 0.00 0.00 3.32
919 2514 2.673368 GGTAGAAGAATCACTGCCGTTG 59.327 50.000 0.00 0.00 0.00 4.10
920 2515 2.301870 TGGTAGAAGAATCACTGCCGTT 59.698 45.455 9.06 0.00 40.77 4.44
1020 2617 2.009424 CTGCGGCGATGGAGAAGAGA 62.009 60.000 12.98 0.00 0.00 3.10
1298 3153 0.178973 TGTGAAGGTGGGAGAGACGA 60.179 55.000 0.00 0.00 0.00 4.20
1299 3154 0.244994 CTGTGAAGGTGGGAGAGACG 59.755 60.000 0.00 0.00 0.00 4.18
1300 3155 0.036858 GCTGTGAAGGTGGGAGAGAC 60.037 60.000 0.00 0.00 0.00 3.36
1345 3214 5.586243 TCCTCAAAATTAGATGAAGCGAAGG 59.414 40.000 0.00 0.00 0.00 3.46
1371 3240 4.260702 CGCCATCTGCAAAAACAACAATTT 60.261 37.500 0.00 0.00 41.33 1.82
1429 3342 2.045536 CTCACAGGGCTCAAGGGC 60.046 66.667 0.00 0.00 40.05 5.19
1563 3729 0.250553 CCACGGCCTTAAGAACACCA 60.251 55.000 3.36 0.00 0.00 4.17
1746 4214 1.202855 AGAGCACCTGCAGTTTGACAT 60.203 47.619 13.81 0.00 45.16 3.06
1815 4283 1.133730 GGGACCCAACCACTAAACACA 60.134 52.381 5.33 0.00 0.00 3.72
1821 4289 0.688487 CGAAAGGGACCCAACCACTA 59.312 55.000 14.60 0.00 0.00 2.74
1928 4403 5.823045 AGCTTACCCAACATCTAGTTATTGC 59.177 40.000 0.00 0.00 38.74 3.56
2016 4491 1.806542 ACAAGGCTGCACATAAAGTCG 59.193 47.619 0.50 0.00 0.00 4.18
2051 4527 9.294614 AGGCATCAAGAGATAAGAAATATTTCC 57.705 33.333 21.86 8.88 33.70 3.13
2294 4770 5.300752 CAACCACATCTCTTGTTGACTAGT 58.699 41.667 0.00 0.00 40.30 2.57
2613 5089 0.838554 TGGGAACATTGAGGGTCGGA 60.839 55.000 0.00 0.00 33.40 4.55
2618 5094 4.888326 TTTCATTTGGGAACATTGAGGG 57.112 40.909 0.00 0.00 42.32 4.30
2683 5159 3.812053 GAGGCAGCACTGGATATTAAGTG 59.188 47.826 12.23 12.23 45.37 3.16
2786 5270 4.172807 TGTACAGTCCTAAGGTGGGAAAT 58.827 43.478 0.00 0.00 34.35 2.17
2789 5273 3.263369 TTGTACAGTCCTAAGGTGGGA 57.737 47.619 0.00 0.00 0.00 4.37
2907 5392 7.823745 AGAAACATCACCAAAGTAGAATTGT 57.176 32.000 0.00 0.00 0.00 2.71
2910 5395 7.228706 ACGAAAGAAACATCACCAAAGTAGAAT 59.771 33.333 0.00 0.00 0.00 2.40
2913 5398 6.300354 ACGAAAGAAACATCACCAAAGTAG 57.700 37.500 0.00 0.00 0.00 2.57
2919 5404 7.308109 GGTTTACATACGAAAGAAACATCACCA 60.308 37.037 0.00 0.00 32.78 4.17
2920 5405 7.019418 GGTTTACATACGAAAGAAACATCACC 58.981 38.462 0.00 0.00 32.78 4.02
2929 5418 5.771469 TCGTGAAGGTTTACATACGAAAGA 58.229 37.500 0.00 0.00 37.58 2.52
2950 5440 8.084684 TCAGAGATCATATTATTCACAGGTTCG 58.915 37.037 0.00 0.00 0.00 3.95
2963 5453 9.593134 GTTAAACAGAGTGTCAGAGATCATATT 57.407 33.333 0.00 0.00 0.00 1.28
2983 5473 8.190784 AGCATTGCTGAATGTAATAGGTTAAAC 58.809 33.333 11.09 0.00 41.09 2.01
2984 5474 8.292444 AGCATTGCTGAATGTAATAGGTTAAA 57.708 30.769 11.09 0.00 41.09 1.52
3019 5509 6.761242 AGTCAACGCTATATGATTTTACTGCA 59.239 34.615 0.00 0.00 0.00 4.41
3388 5879 3.055312 AGGGGAAAACGAGGATGTAGAAC 60.055 47.826 0.00 0.00 0.00 3.01
3460 5951 3.318839 CAGTTGAGAGCTCAGATAGGAGG 59.681 52.174 17.77 0.00 41.13 4.30
3461 5952 3.243501 GCAGTTGAGAGCTCAGATAGGAG 60.244 52.174 17.77 0.00 41.13 3.69
4014 6516 4.638421 CCGCAGTACATAATTTCCTGGAAA 59.362 41.667 23.08 23.08 35.94 3.13
4039 6541 4.638865 ACCTACAGGAGAAAAACACAACAC 59.361 41.667 1.29 0.00 38.94 3.32
4046 6548 6.438763 CATGTGAAACCTACAGGAGAAAAAC 58.561 40.000 1.29 0.00 38.94 2.43
4048 6550 5.070001 CCATGTGAAACCTACAGGAGAAAA 58.930 41.667 1.29 0.00 38.94 2.29
4065 6567 3.005472 CGGTATCCAGGTAGTACCATGTG 59.995 52.174 21.49 10.70 41.95 3.21
4068 6570 3.607490 ACGGTATCCAGGTAGTACCAT 57.393 47.619 21.49 8.79 41.95 3.55
4092 6594 2.289592 TCTAAGGAGAGGATACCCGC 57.710 55.000 0.00 0.00 37.58 6.13
4094 6596 4.262678 GCACAATCTAAGGAGAGGATACCC 60.263 50.000 0.00 0.00 34.35 3.69
4112 6616 0.463654 GGCAGTATCGATGGGCACAA 60.464 55.000 8.54 0.00 0.00 3.33
4114 6618 1.598130 GGGCAGTATCGATGGGCAC 60.598 63.158 8.54 6.21 0.00 5.01
4119 6623 1.875514 CCACAATGGGCAGTATCGATG 59.124 52.381 8.54 0.00 32.67 3.84
4130 6634 0.890683 GAACTGAAGGCCACAATGGG 59.109 55.000 5.01 0.00 38.19 4.00
4141 6645 4.913376 CACTGAAAAGTGTGGAACTGAAG 58.087 43.478 0.00 0.00 39.81 3.02
4162 6667 8.688747 TGATATGCAACCAATGTAATGATACA 57.311 30.769 0.00 0.00 45.67 2.29
4175 6680 6.489361 TGCATACAATGTATGATATGCAACCA 59.511 34.615 30.92 15.96 45.39 3.67
4234 6739 8.606830 AGGTTCAGAATCTTAGTGGTATCTTTT 58.393 33.333 0.00 0.00 0.00 2.27
4235 6740 8.043710 CAGGTTCAGAATCTTAGTGGTATCTTT 58.956 37.037 0.00 0.00 0.00 2.52
4247 6752 2.716424 TCCCCAACAGGTTCAGAATCTT 59.284 45.455 0.00 0.00 0.00 2.40
4248 6753 2.348472 TCCCCAACAGGTTCAGAATCT 58.652 47.619 0.00 0.00 0.00 2.40
4265 6770 4.080299 GGTCTCATCATGGGGTAATATCCC 60.080 50.000 0.46 0.46 46.31 3.85
4266 6771 4.080299 GGGTCTCATCATGGGGTAATATCC 60.080 50.000 0.00 0.00 0.00 2.59
4267 6772 4.536090 TGGGTCTCATCATGGGGTAATATC 59.464 45.833 0.00 0.00 0.00 1.63
4268 6773 4.289672 GTGGGTCTCATCATGGGGTAATAT 59.710 45.833 0.00 0.00 0.00 1.28
4269 6774 3.650942 GTGGGTCTCATCATGGGGTAATA 59.349 47.826 0.00 0.00 0.00 0.98
4270 6775 2.443255 GTGGGTCTCATCATGGGGTAAT 59.557 50.000 0.00 0.00 0.00 1.89
4271 6776 1.843851 GTGGGTCTCATCATGGGGTAA 59.156 52.381 0.00 0.00 0.00 2.85
4272 6777 1.507140 GTGGGTCTCATCATGGGGTA 58.493 55.000 0.00 0.00 0.00 3.69
4273 6778 1.281925 GGTGGGTCTCATCATGGGGT 61.282 60.000 0.00 0.00 0.00 4.95
4274 6779 1.281199 TGGTGGGTCTCATCATGGGG 61.281 60.000 0.00 0.00 30.22 4.96
4275 6780 0.848735 ATGGTGGGTCTCATCATGGG 59.151 55.000 0.00 0.00 44.92 4.00
4279 6784 1.556451 CAGACATGGTGGGTCTCATCA 59.444 52.381 0.00 0.00 43.47 3.07
4280 6785 1.134280 CCAGACATGGTGGGTCTCATC 60.134 57.143 8.23 0.00 43.47 2.92
4281 6786 0.914644 CCAGACATGGTGGGTCTCAT 59.085 55.000 8.23 0.00 43.47 2.90
4282 6787 2.376063 CCAGACATGGTGGGTCTCA 58.624 57.895 8.23 0.00 43.47 3.27
4288 6793 4.802051 CCGGCCCAGACATGGTGG 62.802 72.222 9.01 9.01 46.10 4.61
4289 6794 4.802051 CCCGGCCCAGACATGGTG 62.802 72.222 0.00 0.00 46.10 4.17
4292 6797 1.153168 CTAACCCGGCCCAGACATG 60.153 63.158 0.00 0.00 0.00 3.21
4293 6798 1.306654 TCTAACCCGGCCCAGACAT 60.307 57.895 0.00 0.00 0.00 3.06
4294 6799 2.120940 TCTAACCCGGCCCAGACA 59.879 61.111 0.00 0.00 0.00 3.41
4295 6800 1.988406 AGTCTAACCCGGCCCAGAC 60.988 63.158 15.83 15.83 38.13 3.51
4296 6801 1.987855 CAGTCTAACCCGGCCCAGA 60.988 63.158 0.00 0.00 0.00 3.86
4297 6802 1.838073 AACAGTCTAACCCGGCCCAG 61.838 60.000 0.00 0.00 0.00 4.45
4298 6803 1.844289 AACAGTCTAACCCGGCCCA 60.844 57.895 0.00 0.00 0.00 5.36
4299 6804 1.376812 CAACAGTCTAACCCGGCCC 60.377 63.158 0.00 0.00 0.00 5.80
4300 6805 1.376812 CCAACAGTCTAACCCGGCC 60.377 63.158 0.00 0.00 0.00 6.13
4301 6806 2.038837 GCCAACAGTCTAACCCGGC 61.039 63.158 0.00 0.00 0.00 6.13
4302 6807 1.740296 CGCCAACAGTCTAACCCGG 60.740 63.158 0.00 0.00 0.00 5.73
4303 6808 1.012486 GTCGCCAACAGTCTAACCCG 61.012 60.000 0.00 0.00 0.00 5.28
4304 6809 0.320697 AGTCGCCAACAGTCTAACCC 59.679 55.000 0.00 0.00 0.00 4.11
4305 6810 2.165319 AAGTCGCCAACAGTCTAACC 57.835 50.000 0.00 0.00 0.00 2.85
4306 6811 3.645884 TGTAAGTCGCCAACAGTCTAAC 58.354 45.455 0.00 0.00 0.00 2.34
4307 6812 4.325028 TTGTAAGTCGCCAACAGTCTAA 57.675 40.909 0.00 0.00 0.00 2.10
4308 6813 4.304110 CTTTGTAAGTCGCCAACAGTCTA 58.696 43.478 0.00 0.00 0.00 2.59
4309 6814 2.902705 TTGTAAGTCGCCAACAGTCT 57.097 45.000 0.00 0.00 0.00 3.24
4310 6815 2.223377 CCTTTGTAAGTCGCCAACAGTC 59.777 50.000 0.00 0.00 0.00 3.51
4311 6816 2.158871 TCCTTTGTAAGTCGCCAACAGT 60.159 45.455 0.00 0.00 0.00 3.55
4312 6817 2.480419 CTCCTTTGTAAGTCGCCAACAG 59.520 50.000 0.00 0.00 0.00 3.16
4313 6818 2.489971 CTCCTTTGTAAGTCGCCAACA 58.510 47.619 0.00 0.00 0.00 3.33
4314 6819 1.804748 CCTCCTTTGTAAGTCGCCAAC 59.195 52.381 0.00 0.00 0.00 3.77
4315 6820 1.880646 GCCTCCTTTGTAAGTCGCCAA 60.881 52.381 0.00 0.00 0.00 4.52
4316 6821 0.321298 GCCTCCTTTGTAAGTCGCCA 60.321 55.000 0.00 0.00 0.00 5.69
4317 6822 1.025113 GGCCTCCTTTGTAAGTCGCC 61.025 60.000 0.00 0.00 0.00 5.54
4318 6823 0.036294 AGGCCTCCTTTGTAAGTCGC 60.036 55.000 0.00 0.00 0.00 5.19
4319 6824 2.474410 AAGGCCTCCTTTGTAAGTCG 57.526 50.000 5.23 0.00 41.69 4.18
4320 6825 4.907809 ACTTAAGGCCTCCTTTGTAAGTC 58.092 43.478 16.30 0.00 41.69 3.01
4321 6826 4.995624 ACTTAAGGCCTCCTTTGTAAGT 57.004 40.909 16.30 16.30 41.69 2.24
4322 6827 5.429130 CCTACTTAAGGCCTCCTTTGTAAG 58.571 45.833 5.23 11.97 41.69 2.34
4323 6828 5.431179 CCTACTTAAGGCCTCCTTTGTAA 57.569 43.478 5.23 0.00 41.69 2.41
4339 6844 8.816894 TCACATCTTGATCTTCTAAACCTACTT 58.183 33.333 0.00 0.00 0.00 2.24
4340 6845 8.367660 TCACATCTTGATCTTCTAAACCTACT 57.632 34.615 0.00 0.00 0.00 2.57
4341 6846 8.470805 TCTCACATCTTGATCTTCTAAACCTAC 58.529 37.037 0.00 0.00 32.17 3.18
4342 6847 8.470805 GTCTCACATCTTGATCTTCTAAACCTA 58.529 37.037 0.00 0.00 32.17 3.08
4343 6848 7.327214 GTCTCACATCTTGATCTTCTAAACCT 58.673 38.462 0.00 0.00 32.17 3.50
4344 6849 6.536941 GGTCTCACATCTTGATCTTCTAAACC 59.463 42.308 0.00 0.00 32.17 3.27
4345 6850 6.536941 GGGTCTCACATCTTGATCTTCTAAAC 59.463 42.308 0.00 0.00 32.17 2.01
4346 6851 6.628175 CGGGTCTCACATCTTGATCTTCTAAA 60.628 42.308 0.00 0.00 32.17 1.85
4347 6852 5.163509 CGGGTCTCACATCTTGATCTTCTAA 60.164 44.000 0.00 0.00 32.17 2.10
4348 6853 4.339530 CGGGTCTCACATCTTGATCTTCTA 59.660 45.833 0.00 0.00 32.17 2.10
4349 6854 3.131933 CGGGTCTCACATCTTGATCTTCT 59.868 47.826 0.00 0.00 32.17 2.85
4350 6855 3.452474 CGGGTCTCACATCTTGATCTTC 58.548 50.000 0.00 0.00 32.17 2.87
4351 6856 2.169352 CCGGGTCTCACATCTTGATCTT 59.831 50.000 0.00 0.00 32.17 2.40
4352 6857 1.759445 CCGGGTCTCACATCTTGATCT 59.241 52.381 0.00 0.00 32.17 2.75
4353 6858 1.757118 TCCGGGTCTCACATCTTGATC 59.243 52.381 0.00 0.00 32.17 2.92
4354 6859 1.759445 CTCCGGGTCTCACATCTTGAT 59.241 52.381 0.00 0.00 32.17 2.57
4355 6860 1.186200 CTCCGGGTCTCACATCTTGA 58.814 55.000 0.00 0.00 0.00 3.02
4356 6861 0.176680 CCTCCGGGTCTCACATCTTG 59.823 60.000 0.00 0.00 0.00 3.02
4357 6862 0.978146 CCCTCCGGGTCTCACATCTT 60.978 60.000 0.00 0.00 38.25 2.40
4358 6863 1.381872 CCCTCCGGGTCTCACATCT 60.382 63.158 0.00 0.00 38.25 2.90
4359 6864 3.095347 GCCCTCCGGGTCTCACATC 62.095 68.421 0.00 0.00 46.51 3.06
4360 6865 3.083997 GCCCTCCGGGTCTCACAT 61.084 66.667 0.00 0.00 46.51 3.21
4365 6870 3.292481 TAAGTCGCCCTCCGGGTCT 62.292 63.158 0.00 0.00 46.51 3.85
4366 6871 2.757099 TAAGTCGCCCTCCGGGTC 60.757 66.667 0.00 0.00 46.51 4.46
4367 6872 3.073101 GTAAGTCGCCCTCCGGGT 61.073 66.667 0.00 0.00 46.51 5.28
4402 6907 1.755783 CCATCTTCTGGGCTTGGGC 60.756 63.158 0.00 0.00 41.82 5.36
4403 6908 4.672251 CCATCTTCTGGGCTTGGG 57.328 61.111 0.00 0.00 41.82 4.12
4420 6925 2.147387 ATGGGGCCGGGTCTCATAC 61.147 63.158 13.48 0.00 0.00 2.39
4421 6926 2.146724 CATGGGGCCGGGTCTCATA 61.147 63.158 14.84 0.00 0.00 2.15
4422 6927 3.492353 CATGGGGCCGGGTCTCAT 61.492 66.667 8.55 8.55 0.00 2.90
4423 6928 4.731853 TCATGGGGCCGGGTCTCA 62.732 66.667 2.37 2.37 0.00 3.27
4424 6929 3.171388 ATCATGGGGCCGGGTCTC 61.171 66.667 2.18 0.00 0.00 3.36
4425 6930 3.171388 GATCATGGGGCCGGGTCT 61.171 66.667 2.18 0.00 0.00 3.85
4426 6931 4.271016 GGATCATGGGGCCGGGTC 62.271 72.222 2.18 0.00 0.00 4.46
4429 6934 4.626081 GTCGGATCATGGGGCCGG 62.626 72.222 17.47 0.00 44.87 6.13
4430 6935 4.626081 GGTCGGATCATGGGGCCG 62.626 72.222 13.33 13.33 46.08 6.13
4431 6936 4.271016 GGGTCGGATCATGGGGCC 62.271 72.222 0.00 0.00 0.00 5.80
4432 6937 4.626081 CGGGTCGGATCATGGGGC 62.626 72.222 0.00 0.00 0.00 5.80
4443 6948 0.527817 GCATACAAGAGTCCGGGTCG 60.528 60.000 0.00 0.00 0.00 4.79
4444 6949 0.179081 GGCATACAAGAGTCCGGGTC 60.179 60.000 0.00 0.00 0.00 4.46
4445 6950 1.623542 GGGCATACAAGAGTCCGGGT 61.624 60.000 0.00 0.00 0.00 5.28
4446 6951 1.146263 GGGCATACAAGAGTCCGGG 59.854 63.158 0.00 0.00 0.00 5.73
4447 6952 0.179073 CTGGGCATACAAGAGTCCGG 60.179 60.000 0.00 0.00 0.00 5.14
4448 6953 0.179073 CCTGGGCATACAAGAGTCCG 60.179 60.000 0.00 0.00 0.00 4.79
4449 6954 0.181350 CCCTGGGCATACAAGAGTCC 59.819 60.000 0.00 0.00 0.00 3.85
4450 6955 3.788672 CCCTGGGCATACAAGAGTC 57.211 57.895 0.00 0.00 0.00 3.36
4465 6970 0.260816 TATACACAGGTCGAGGCCCT 59.739 55.000 0.00 0.00 0.00 5.19
4466 6971 1.339097 ATATACACAGGTCGAGGCCC 58.661 55.000 0.00 0.00 0.00 5.80
4467 6972 4.557205 CTTTATATACACAGGTCGAGGCC 58.443 47.826 0.00 0.00 0.00 5.19
4468 6973 4.038883 ACCTTTATATACACAGGTCGAGGC 59.961 45.833 0.00 0.00 34.27 4.70
4469 6974 5.301045 TCACCTTTATATACACAGGTCGAGG 59.699 44.000 4.95 0.00 37.56 4.63
4470 6975 6.262496 TCTCACCTTTATATACACAGGTCGAG 59.738 42.308 16.78 16.78 37.56 4.04
4471 6976 6.039047 GTCTCACCTTTATATACACAGGTCGA 59.961 42.308 4.95 6.03 37.56 4.20
4472 6977 6.207213 GTCTCACCTTTATATACACAGGTCG 58.793 44.000 4.95 3.07 37.56 4.79
4473 6978 6.462628 GGGTCTCACCTTTATATACACAGGTC 60.463 46.154 4.95 0.00 37.56 3.85
4474 6979 5.365895 GGGTCTCACCTTTATATACACAGGT 59.634 44.000 2.70 2.70 40.50 4.00
4475 6980 5.602978 AGGGTCTCACCTTTATATACACAGG 59.397 44.000 0.00 1.66 37.69 4.00
4476 6981 6.516718 CAGGGTCTCACCTTTATATACACAG 58.483 44.000 0.00 0.00 39.34 3.66
4477 6982 5.163343 GCAGGGTCTCACCTTTATATACACA 60.163 44.000 0.00 0.00 39.34 3.72
4478 6983 5.298347 GCAGGGTCTCACCTTTATATACAC 58.702 45.833 0.00 0.00 39.34 2.90
4479 6984 4.038763 CGCAGGGTCTCACCTTTATATACA 59.961 45.833 0.00 0.00 39.34 2.29
4480 6985 4.557205 CGCAGGGTCTCACCTTTATATAC 58.443 47.826 0.00 0.00 39.34 1.47
4481 6986 4.866508 CGCAGGGTCTCACCTTTATATA 57.133 45.455 0.00 0.00 39.34 0.86
4482 6987 3.753294 CGCAGGGTCTCACCTTTATAT 57.247 47.619 0.00 0.00 39.34 0.86
4504 7009 7.064016 CAATTGATTGTTTATTGGGTTAACCCG 59.936 37.037 33.46 12.89 44.61 5.28
4505 7010 8.097662 TCAATTGATTGTTTATTGGGTTAACCC 58.902 33.333 33.38 33.38 45.82 4.11
4506 7011 9.150348 CTCAATTGATTGTTTATTGGGTTAACC 57.850 33.333 16.85 16.85 38.84 2.85
4507 7012 9.921637 TCTCAATTGATTGTTTATTGGGTTAAC 57.078 29.630 8.96 0.00 38.84 2.01
4509 7014 8.250332 GCTCTCAATTGATTGTTTATTGGGTTA 58.750 33.333 8.96 0.00 38.84 2.85
4510 7015 7.038799 AGCTCTCAATTGATTGTTTATTGGGTT 60.039 33.333 8.96 0.00 38.84 4.11
4511 7016 6.438425 AGCTCTCAATTGATTGTTTATTGGGT 59.562 34.615 8.96 0.00 38.84 4.51
4512 7017 6.870769 AGCTCTCAATTGATTGTTTATTGGG 58.129 36.000 8.96 0.00 38.84 4.12
4513 7018 8.133627 CCTAGCTCTCAATTGATTGTTTATTGG 58.866 37.037 8.96 0.58 38.84 3.16
4514 7019 8.680903 ACCTAGCTCTCAATTGATTGTTTATTG 58.319 33.333 8.96 0.00 38.84 1.90
4515 7020 8.814038 ACCTAGCTCTCAATTGATTGTTTATT 57.186 30.769 8.96 0.00 38.84 1.40
4516 7021 8.814038 AACCTAGCTCTCAATTGATTGTTTAT 57.186 30.769 8.96 0.00 38.84 1.40
4517 7022 9.733556 TTAACCTAGCTCTCAATTGATTGTTTA 57.266 29.630 8.96 0.00 38.84 2.01
4518 7023 8.635765 TTAACCTAGCTCTCAATTGATTGTTT 57.364 30.769 8.96 0.00 38.84 2.83
4519 7024 7.148171 GCTTAACCTAGCTCTCAATTGATTGTT 60.148 37.037 8.96 5.61 37.33 2.83
4520 7025 6.317391 GCTTAACCTAGCTCTCAATTGATTGT 59.683 38.462 8.96 0.00 37.33 2.71
4521 7026 6.510799 CGCTTAACCTAGCTCTCAATTGATTG 60.511 42.308 8.96 6.06 39.03 2.67
4522 7027 5.525378 CGCTTAACCTAGCTCTCAATTGATT 59.475 40.000 8.96 0.24 39.03 2.57
4523 7028 5.053145 CGCTTAACCTAGCTCTCAATTGAT 58.947 41.667 8.96 0.00 39.03 2.57
4524 7029 4.159693 TCGCTTAACCTAGCTCTCAATTGA 59.840 41.667 8.12 8.12 39.03 2.57
4525 7030 4.433615 TCGCTTAACCTAGCTCTCAATTG 58.566 43.478 0.00 0.00 39.03 2.32
4526 7031 4.737855 TCGCTTAACCTAGCTCTCAATT 57.262 40.909 0.00 0.00 39.03 2.32
4527 7032 4.946478 ATCGCTTAACCTAGCTCTCAAT 57.054 40.909 0.00 0.00 39.03 2.57
4528 7033 4.402793 AGAATCGCTTAACCTAGCTCTCAA 59.597 41.667 0.00 0.00 39.03 3.02
4529 7034 3.954904 AGAATCGCTTAACCTAGCTCTCA 59.045 43.478 0.00 0.00 39.03 3.27
4530 7035 4.295051 CAGAATCGCTTAACCTAGCTCTC 58.705 47.826 0.00 0.00 39.03 3.20
4531 7036 3.491792 GCAGAATCGCTTAACCTAGCTCT 60.492 47.826 0.00 0.00 39.03 4.09
4532 7037 2.797719 GCAGAATCGCTTAACCTAGCTC 59.202 50.000 0.00 0.00 39.03 4.09
4533 7038 2.432510 AGCAGAATCGCTTAACCTAGCT 59.567 45.455 0.00 0.00 39.99 3.32
4534 7039 2.797719 GAGCAGAATCGCTTAACCTAGC 59.202 50.000 1.67 0.00 44.01 3.42
4535 7040 3.385577 GGAGCAGAATCGCTTAACCTAG 58.614 50.000 1.67 0.00 44.01 3.02
4536 7041 2.102588 GGGAGCAGAATCGCTTAACCTA 59.897 50.000 1.67 0.00 44.01 3.08
4537 7042 1.134371 GGGAGCAGAATCGCTTAACCT 60.134 52.381 1.67 0.00 44.01 3.50
4538 7043 1.300481 GGGAGCAGAATCGCTTAACC 58.700 55.000 1.67 2.35 44.01 2.85
4539 7044 1.134371 AGGGGAGCAGAATCGCTTAAC 60.134 52.381 1.67 0.00 44.01 2.01
4540 7045 1.134401 CAGGGGAGCAGAATCGCTTAA 60.134 52.381 1.67 0.00 44.01 1.85
4541 7046 0.465705 CAGGGGAGCAGAATCGCTTA 59.534 55.000 1.67 0.00 44.01 3.09
4542 7047 1.222936 CAGGGGAGCAGAATCGCTT 59.777 57.895 1.67 0.00 44.01 4.68
4544 7049 0.178068 TTACAGGGGAGCAGAATCGC 59.822 55.000 0.00 0.00 0.00 4.58
4545 7050 2.760374 GATTACAGGGGAGCAGAATCG 58.240 52.381 0.00 0.00 0.00 3.34
4546 7051 2.365617 TCGATTACAGGGGAGCAGAATC 59.634 50.000 0.00 0.00 0.00 2.52
4547 7052 2.398588 TCGATTACAGGGGAGCAGAAT 58.601 47.619 0.00 0.00 0.00 2.40
4548 7053 1.860641 TCGATTACAGGGGAGCAGAA 58.139 50.000 0.00 0.00 0.00 3.02
4549 7054 2.088104 ATCGATTACAGGGGAGCAGA 57.912 50.000 0.00 0.00 0.00 4.26
4550 7055 2.028930 GGTATCGATTACAGGGGAGCAG 60.029 54.545 1.71 0.00 31.99 4.24
4551 7056 1.968493 GGTATCGATTACAGGGGAGCA 59.032 52.381 1.71 0.00 31.99 4.26
4552 7057 1.275573 GGGTATCGATTACAGGGGAGC 59.724 57.143 1.71 0.00 31.99 4.70
4553 7058 2.605257 TGGGTATCGATTACAGGGGAG 58.395 52.381 1.71 0.00 31.99 4.30
4554 7059 2.779429 TGGGTATCGATTACAGGGGA 57.221 50.000 1.71 0.00 31.99 4.81
4555 7060 3.326588 TGATTGGGTATCGATTACAGGGG 59.673 47.826 1.71 0.00 35.94 4.79
4556 7061 4.617253 TGATTGGGTATCGATTACAGGG 57.383 45.455 1.71 0.00 35.94 4.45
4557 7062 7.158697 TGTATTGATTGGGTATCGATTACAGG 58.841 38.462 1.71 0.00 38.20 4.00
4558 7063 8.495949 GTTGTATTGATTGGGTATCGATTACAG 58.504 37.037 1.71 0.00 38.20 2.74
4559 7064 8.208224 AGTTGTATTGATTGGGTATCGATTACA 58.792 33.333 1.71 0.00 38.20 2.41
4560 7065 8.603242 AGTTGTATTGATTGGGTATCGATTAC 57.397 34.615 1.71 0.00 38.20 1.89
4561 7066 8.425703 TGAGTTGTATTGATTGGGTATCGATTA 58.574 33.333 1.71 0.00 38.20 1.75
4562 7067 7.279615 TGAGTTGTATTGATTGGGTATCGATT 58.720 34.615 1.71 0.00 38.20 3.34
4563 7068 6.826668 TGAGTTGTATTGATTGGGTATCGAT 58.173 36.000 2.16 2.16 40.01 3.59
4564 7069 6.228616 TGAGTTGTATTGATTGGGTATCGA 57.771 37.500 0.00 0.00 35.94 3.59
4565 7070 6.918892 TTGAGTTGTATTGATTGGGTATCG 57.081 37.500 0.00 0.00 35.94 2.92
4566 7071 8.519526 TGTTTTGAGTTGTATTGATTGGGTATC 58.480 33.333 0.00 0.00 0.00 2.24
4567 7072 8.415950 TGTTTTGAGTTGTATTGATTGGGTAT 57.584 30.769 0.00 0.00 0.00 2.73
4568 7073 7.040062 CCTGTTTTGAGTTGTATTGATTGGGTA 60.040 37.037 0.00 0.00 0.00 3.69
4569 7074 6.239289 CCTGTTTTGAGTTGTATTGATTGGGT 60.239 38.462 0.00 0.00 0.00 4.51
4570 7075 6.015519 TCCTGTTTTGAGTTGTATTGATTGGG 60.016 38.462 0.00 0.00 0.00 4.12
4571 7076 6.863126 GTCCTGTTTTGAGTTGTATTGATTGG 59.137 38.462 0.00 0.00 0.00 3.16
4572 7077 6.578545 CGTCCTGTTTTGAGTTGTATTGATTG 59.421 38.462 0.00 0.00 0.00 2.67
4573 7078 6.262273 ACGTCCTGTTTTGAGTTGTATTGATT 59.738 34.615 0.00 0.00 0.00 2.57
4574 7079 5.763204 ACGTCCTGTTTTGAGTTGTATTGAT 59.237 36.000 0.00 0.00 0.00 2.57
4575 7080 5.120399 ACGTCCTGTTTTGAGTTGTATTGA 58.880 37.500 0.00 0.00 0.00 2.57
4576 7081 5.418310 ACGTCCTGTTTTGAGTTGTATTG 57.582 39.130 0.00 0.00 0.00 1.90
4577 7082 5.699458 CCTACGTCCTGTTTTGAGTTGTATT 59.301 40.000 0.00 0.00 0.00 1.89
4578 7083 5.221581 ACCTACGTCCTGTTTTGAGTTGTAT 60.222 40.000 0.00 0.00 0.00 2.29
4579 7084 4.099881 ACCTACGTCCTGTTTTGAGTTGTA 59.900 41.667 0.00 0.00 0.00 2.41
4580 7085 3.118519 ACCTACGTCCTGTTTTGAGTTGT 60.119 43.478 0.00 0.00 0.00 3.32
4581 7086 3.463944 ACCTACGTCCTGTTTTGAGTTG 58.536 45.455 0.00 0.00 0.00 3.16
4582 7087 3.832615 ACCTACGTCCTGTTTTGAGTT 57.167 42.857 0.00 0.00 0.00 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.