Multiple sequence alignment - TraesCS2D01G542700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G542700 chr2D 100.000 5086 0 0 1 5086 621071597 621066512 0.000000e+00 9393.0
1 TraesCS2D01G542700 chr2D 91.906 383 22 6 123 504 621088068 621087694 1.250000e-145 527.0
2 TraesCS2D01G542700 chr2D 88.679 265 16 6 1148 1412 621086934 621086684 1.380000e-80 311.0
3 TraesCS2D01G542700 chr2D 93.220 177 8 4 504 679 509744305 509744478 1.820000e-64 257.0
4 TraesCS2D01G542700 chr2D 91.975 162 10 2 1452 1613 621086386 621086228 1.840000e-54 224.0
5 TraesCS2D01G542700 chr2D 93.571 140 6 3 4261 4399 507464223 507464086 6.670000e-49 206.0
6 TraesCS2D01G542700 chr2A 89.234 2703 178 44 1649 4274 752874470 752871804 0.000000e+00 3275.0
7 TraesCS2D01G542700 chr2A 86.459 901 50 33 736 1613 752875323 752874472 0.000000e+00 922.0
8 TraesCS2D01G542700 chr2A 89.855 414 38 2 32 444 752904309 752903899 3.490000e-146 529.0
9 TraesCS2D01G542700 chr2A 84.259 540 54 17 4565 5086 752871550 752871024 9.830000e-137 497.0
10 TraesCS2D01G542700 chr2A 92.857 140 10 0 4260 4399 240789783 240789644 2.400000e-48 204.0
11 TraesCS2D01G542700 chr2A 94.615 130 6 1 4396 4525 752871803 752871675 3.110000e-47 200.0
12 TraesCS2D01G542700 chr2A 91.489 47 1 3 668 711 752883245 752883199 1.530000e-05 62.1
13 TraesCS2D01G542700 chr2B 92.216 1336 52 21 1649 2955 761995032 761993720 0.000000e+00 1844.0
14 TraesCS2D01G542700 chr2B 87.318 1238 110 24 2957 4176 761993603 761992395 0.000000e+00 1373.0
15 TraesCS2D01G542700 chr2B 92.760 953 35 18 668 1613 761995959 761995034 0.000000e+00 1347.0
16 TraesCS2D01G542700 chr2B 83.437 966 80 43 671 1610 762003271 762002360 0.000000e+00 824.0
17 TraesCS2D01G542700 chr2B 90.506 474 37 3 37 505 762003745 762003275 2.010000e-173 619.0
18 TraesCS2D01G542700 chr2B 91.566 249 20 1 249 496 761996211 761995963 4.880000e-90 342.0
19 TraesCS2D01G542700 chr2B 89.189 222 19 2 37 256 761998440 761998222 6.490000e-69 272.0
20 TraesCS2D01G542700 chr2B 93.642 173 9 2 498 670 548626648 548626818 1.820000e-64 257.0
21 TraesCS2D01G542700 chr2B 90.099 202 14 3 1658 1856 762002353 762002155 1.820000e-64 257.0
22 TraesCS2D01G542700 chr2B 80.381 367 46 23 4739 5086 761992036 761991677 6.530000e-64 255.0
23 TraesCS2D01G542700 chr2B 93.064 173 11 1 500 672 194641140 194640969 8.450000e-63 252.0
24 TraesCS2D01G542700 chr2B 92.414 145 7 4 4257 4399 185875589 185875447 2.400000e-48 204.0
25 TraesCS2D01G542700 chr2B 93.284 134 9 0 3841 3974 46099778 46099645 1.120000e-46 198.0
26 TraesCS2D01G542700 chr2B 90.323 93 9 0 4821 4913 46099085 46098993 6.920000e-24 122.0
27 TraesCS2D01G542700 chr1B 87.945 365 39 5 3841 4200 666189075 666188711 4.710000e-115 425.0
28 TraesCS2D01G542700 chr1B 81.633 539 45 24 1052 1578 97673276 97672780 1.030000e-106 398.0
29 TraesCS2D01G542700 chr1B 95.420 131 6 0 4269 4399 646782587 646782457 5.160000e-50 209.0
30 TraesCS2D01G542700 chr6A 82.996 494 45 15 1134 1607 429226675 429227149 1.320000e-110 411.0
31 TraesCS2D01G542700 chr6A 96.850 127 4 0 4273 4399 457399481 457399355 3.990000e-51 213.0
32 TraesCS2D01G542700 chr4A 87.017 362 41 4 3843 4199 671017938 671017578 2.210000e-108 403.0
33 TraesCS2D01G542700 chr4A 95.455 132 6 0 4272 4403 200095981 200095850 1.430000e-50 211.0
34 TraesCS2D01G542700 chr7D 80.339 590 53 22 1033 1607 569306513 569307054 6.180000e-104 388.0
35 TraesCS2D01G542700 chr6D 79.966 594 61 20 1033 1613 367273319 367272771 7.990000e-103 385.0
36 TraesCS2D01G542700 chr6D 90.761 184 14 3 487 670 31467845 31468025 5.090000e-60 243.0
37 TraesCS2D01G542700 chr5D 80.034 596 58 21 1033 1613 23023642 23023093 7.990000e-103 385.0
38 TraesCS2D01G542700 chr5D 82.759 435 48 17 1196 1613 31939484 31939060 3.740000e-96 363.0
39 TraesCS2D01G542700 chr5D 93.642 173 10 1 498 670 25039974 25040145 1.820000e-64 257.0
40 TraesCS2D01G542700 chr3B 80.230 435 49 19 1196 1613 215400389 215399975 4.980000e-75 292.0
41 TraesCS2D01G542700 chr3B 93.103 174 8 4 498 670 455517914 455518084 8.450000e-63 252.0
42 TraesCS2D01G542700 chr3B 88.764 178 16 2 1165 1342 88358507 88358680 1.110000e-51 215.0
43 TraesCS2D01G542700 chr3B 94.444 90 4 1 1049 1138 88358422 88358510 2.470000e-28 137.0
44 TraesCS2D01G542700 chr3B 89.623 106 8 3 1029 1132 221631973 221631869 1.150000e-26 132.0
45 TraesCS2D01G542700 chr3B 90.323 93 8 1 1029 1120 215293805 215293713 2.490000e-23 121.0
46 TraesCS2D01G542700 chr5B 93.103 174 9 3 504 677 43959396 43959226 8.450000e-63 252.0
47 TraesCS2D01G542700 chr4B 93.064 173 11 1 501 673 15198192 15198021 8.450000e-63 252.0
48 TraesCS2D01G542700 chr1D 89.583 192 18 2 479 670 41493338 41493527 5.090000e-60 243.0
49 TraesCS2D01G542700 chr1D 93.939 132 5 2 1449 1578 12084943 12085073 4.020000e-46 196.0
50 TraesCS2D01G542700 chr6B 90.395 177 13 2 1166 1342 269744298 269744126 3.960000e-56 230.0
51 TraesCS2D01G542700 chr6B 90.722 97 7 2 1049 1144 269744385 269744290 1.490000e-25 128.0
52 TraesCS2D01G542700 chr1A 94.815 135 7 0 4265 4399 407648563 407648697 1.430000e-50 211.0
53 TraesCS2D01G542700 chr1A 95.385 130 5 1 4270 4399 562906914 562906786 6.670000e-49 206.0
54 TraesCS2D01G542700 chrUn 95.420 131 6 0 4269 4399 108296322 108296192 5.160000e-50 209.0
55 TraesCS2D01G542700 chr7A 94.737 95 5 0 2662 2756 85740231 85740137 1.140000e-31 148.0
56 TraesCS2D01G542700 chr7A 92.683 41 1 2 659 698 670957341 670957302 1.980000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G542700 chr2D 621066512 621071597 5085 True 9393.000000 9393 100.000000 1 5086 1 chr2D.!!$R2 5085
1 TraesCS2D01G542700 chr2D 621086228 621088068 1840 True 354.000000 527 90.853333 123 1613 3 chr2D.!!$R3 1490
2 TraesCS2D01G542700 chr2A 752871024 752875323 4299 True 1223.500000 3275 88.641750 736 5086 4 chr2A.!!$R4 4350
3 TraesCS2D01G542700 chr2B 761991677 762003745 12068 True 792.555556 1844 88.608000 37 5086 9 chr2B.!!$R4 5049
4 TraesCS2D01G542700 chr7D 569306513 569307054 541 False 388.000000 388 80.339000 1033 1607 1 chr7D.!!$F1 574
5 TraesCS2D01G542700 chr6D 367272771 367273319 548 True 385.000000 385 79.966000 1033 1613 1 chr6D.!!$R1 580
6 TraesCS2D01G542700 chr5D 23023093 23023642 549 True 385.000000 385 80.034000 1033 1613 1 chr5D.!!$R1 580

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
368 373 1.357761 ACTACCATCCAAACCCCCAAG 59.642 52.381 0.0 0.0 0.00 3.61 F
1344 9053 0.032017 GTTCCCTCCCCTGCTCTCTA 60.032 60.000 0.0 0.0 0.00 2.43 F
1744 9728 0.394565 GGATTCTCTGGTGATCCCCG 59.605 60.000 0.0 0.0 0.00 5.73 F
3540 11689 0.179037 ATCCATCAGTGGGACATGCG 60.179 55.000 0.0 0.0 46.06 4.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1868 9852 0.036306 CAGTACACGAAAAGGGGCCT 59.964 55.000 0.84 0.00 0.00 5.19 R
2250 10237 3.190118 GCCATCTTGAACTTCTGTCAAGG 59.810 47.826 12.79 1.57 40.67 3.61 R
3601 11752 0.468226 AACTGAGGCGTGACAGGAAA 59.532 50.000 0.00 0.00 38.30 3.13 R
4655 12968 0.030638 CAACGGGTTGTGGCAAAGAG 59.969 55.000 3.41 0.00 35.92 2.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 8.947115 ACAGTATCATCTGCATATTGAATGATG 58.053 33.333 6.44 7.95 38.84 3.07
27 28 8.947115 CAGTATCATCTGCATATTGAATGATGT 58.053 33.333 7.82 0.82 34.63 3.06
28 29 8.947115 AGTATCATCTGCATATTGAATGATGTG 58.053 33.333 7.82 0.00 34.63 3.21
29 30 6.009115 TCATCTGCATATTGAATGATGTGC 57.991 37.500 7.82 0.45 42.40 4.57
30 31 5.768164 TCATCTGCATATTGAATGATGTGCT 59.232 36.000 7.82 0.00 42.50 4.40
31 32 6.938030 TCATCTGCATATTGAATGATGTGCTA 59.062 34.615 7.82 0.00 42.50 3.49
32 33 7.610305 TCATCTGCATATTGAATGATGTGCTAT 59.390 33.333 7.82 0.70 42.50 2.97
33 34 7.373778 TCTGCATATTGAATGATGTGCTATC 57.626 36.000 7.83 0.00 42.50 2.08
34 35 6.938030 TCTGCATATTGAATGATGTGCTATCA 59.062 34.615 6.67 6.67 42.50 2.15
35 36 7.610305 TCTGCATATTGAATGATGTGCTATCAT 59.390 33.333 10.12 10.12 42.50 2.45
150 151 6.516739 TGCACTACATAGATAGCATCCTAC 57.483 41.667 0.00 0.00 0.00 3.18
211 212 5.510861 GCGTATCATATTCCCCACTACAAGT 60.511 44.000 0.00 0.00 0.00 3.16
220 225 3.105283 CCCCACTACAAGTAGCCTAACT 58.895 50.000 7.14 0.00 36.66 2.24
287 292 7.118825 ACATCACATATGATCGACAAATCCATC 59.881 37.037 10.38 0.00 44.13 3.51
289 294 5.702209 CACATATGATCGACAAATCCATCCA 59.298 40.000 10.38 0.00 0.00 3.41
330 335 9.458374 GGAAAATCCATACATACATAAAAACCG 57.542 33.333 0.00 0.00 36.28 4.44
368 373 1.357761 ACTACCATCCAAACCCCCAAG 59.642 52.381 0.00 0.00 0.00 3.61
402 407 4.204012 GGATCATTGTACGGATTTTGGGA 58.796 43.478 0.00 0.00 0.00 4.37
410 415 3.732048 ACGGATTTTGGGATTGGTAGT 57.268 42.857 0.00 0.00 0.00 2.73
473 479 9.065798 GTACCTAGTACTCCCTCTGTAAATTAG 57.934 40.741 0.00 0.00 36.25 1.73
512 518 8.658840 AGATCACTAAATCTTATACTCCCTCC 57.341 38.462 0.00 0.00 31.89 4.30
513 519 6.896021 TCACTAAATCTTATACTCCCTCCG 57.104 41.667 0.00 0.00 0.00 4.63
514 520 6.371278 TCACTAAATCTTATACTCCCTCCGT 58.629 40.000 0.00 0.00 0.00 4.69
515 521 6.837568 TCACTAAATCTTATACTCCCTCCGTT 59.162 38.462 0.00 0.00 0.00 4.44
516 522 7.014038 TCACTAAATCTTATACTCCCTCCGTTC 59.986 40.741 0.00 0.00 0.00 3.95
517 523 5.548181 AAATCTTATACTCCCTCCGTTCC 57.452 43.478 0.00 0.00 0.00 3.62
518 524 3.967467 TCTTATACTCCCTCCGTTCCT 57.033 47.619 0.00 0.00 0.00 3.36
519 525 5.595814 ATCTTATACTCCCTCCGTTCCTA 57.404 43.478 0.00 0.00 0.00 2.94
520 526 5.393068 TCTTATACTCCCTCCGTTCCTAA 57.607 43.478 0.00 0.00 0.00 2.69
521 527 5.769835 TCTTATACTCCCTCCGTTCCTAAA 58.230 41.667 0.00 0.00 0.00 1.85
522 528 6.379579 TCTTATACTCCCTCCGTTCCTAAAT 58.620 40.000 0.00 0.00 0.00 1.40
523 529 7.529555 TCTTATACTCCCTCCGTTCCTAAATA 58.470 38.462 0.00 0.00 0.00 1.40
524 530 7.449704 TCTTATACTCCCTCCGTTCCTAAATAC 59.550 40.741 0.00 0.00 0.00 1.89
525 531 3.991683 ACTCCCTCCGTTCCTAAATACT 58.008 45.455 0.00 0.00 0.00 2.12
526 532 4.359996 ACTCCCTCCGTTCCTAAATACTT 58.640 43.478 0.00 0.00 0.00 2.24
527 533 4.161754 ACTCCCTCCGTTCCTAAATACTTG 59.838 45.833 0.00 0.00 0.00 3.16
528 534 4.098894 TCCCTCCGTTCCTAAATACTTGT 58.901 43.478 0.00 0.00 0.00 3.16
529 535 4.161001 TCCCTCCGTTCCTAAATACTTGTC 59.839 45.833 0.00 0.00 0.00 3.18
530 536 4.161754 CCCTCCGTTCCTAAATACTTGTCT 59.838 45.833 0.00 0.00 0.00 3.41
531 537 5.338137 CCCTCCGTTCCTAAATACTTGTCTT 60.338 44.000 0.00 0.00 0.00 3.01
532 538 6.171213 CCTCCGTTCCTAAATACTTGTCTTT 58.829 40.000 0.00 0.00 0.00 2.52
533 539 6.313164 CCTCCGTTCCTAAATACTTGTCTTTC 59.687 42.308 0.00 0.00 0.00 2.62
534 540 7.001099 TCCGTTCCTAAATACTTGTCTTTCT 57.999 36.000 0.00 0.00 0.00 2.52
535 541 8.125978 TCCGTTCCTAAATACTTGTCTTTCTA 57.874 34.615 0.00 0.00 0.00 2.10
536 542 8.248945 TCCGTTCCTAAATACTTGTCTTTCTAG 58.751 37.037 0.00 0.00 0.00 2.43
537 543 8.248945 CCGTTCCTAAATACTTGTCTTTCTAGA 58.751 37.037 0.00 0.00 0.00 2.43
538 544 9.291664 CGTTCCTAAATACTTGTCTTTCTAGAG 57.708 37.037 0.00 0.00 0.00 2.43
572 578 8.942338 AAGTGACTATATACGAAGCAAAATGA 57.058 30.769 0.00 0.00 0.00 2.57
573 579 8.581057 AGTGACTATATACGAAGCAAAATGAG 57.419 34.615 0.00 0.00 0.00 2.90
574 580 8.198109 AGTGACTATATACGAAGCAAAATGAGT 58.802 33.333 0.00 0.00 0.00 3.41
575 581 8.269424 GTGACTATATACGAAGCAAAATGAGTG 58.731 37.037 0.00 0.00 0.00 3.51
576 582 8.194769 TGACTATATACGAAGCAAAATGAGTGA 58.805 33.333 0.00 0.00 0.00 3.41
577 583 8.942338 ACTATATACGAAGCAAAATGAGTGAA 57.058 30.769 0.00 0.00 0.00 3.18
578 584 9.547753 ACTATATACGAAGCAAAATGAGTGAAT 57.452 29.630 0.00 0.00 0.00 2.57
580 586 6.992063 ATACGAAGCAAAATGAGTGAATCT 57.008 33.333 0.00 0.00 0.00 2.40
581 587 9.764363 ATATACGAAGCAAAATGAGTGAATCTA 57.236 29.630 0.00 0.00 0.00 1.98
582 588 6.170675 ACGAAGCAAAATGAGTGAATCTAC 57.829 37.500 0.00 0.00 0.00 2.59
583 589 5.700832 ACGAAGCAAAATGAGTGAATCTACA 59.299 36.000 0.00 0.00 0.00 2.74
584 590 6.204688 ACGAAGCAAAATGAGTGAATCTACAA 59.795 34.615 0.00 0.00 0.00 2.41
585 591 7.094634 ACGAAGCAAAATGAGTGAATCTACAAT 60.095 33.333 0.00 0.00 0.00 2.71
586 592 7.217636 CGAAGCAAAATGAGTGAATCTACAATG 59.782 37.037 0.00 0.00 0.00 2.82
587 593 7.458409 AGCAAAATGAGTGAATCTACAATGT 57.542 32.000 0.00 0.00 0.00 2.71
588 594 8.565896 AGCAAAATGAGTGAATCTACAATGTA 57.434 30.769 0.00 0.00 0.00 2.29
589 595 9.013229 AGCAAAATGAGTGAATCTACAATGTAA 57.987 29.630 0.00 0.00 0.00 2.41
590 596 9.624697 GCAAAATGAGTGAATCTACAATGTAAA 57.375 29.630 0.00 0.00 0.00 2.01
620 626 9.511272 TGTCTATATACATTCGTATGTGGTAGT 57.489 33.333 16.91 2.71 44.56 2.73
621 627 9.985318 GTCTATATACATTCGTATGTGGTAGTC 57.015 37.037 16.91 9.92 44.56 2.59
622 628 9.170734 TCTATATACATTCGTATGTGGTAGTCC 57.829 37.037 16.91 0.00 44.56 3.85
623 629 7.770366 ATATACATTCGTATGTGGTAGTCCA 57.230 36.000 16.91 0.00 44.56 4.02
624 630 6.665992 ATACATTCGTATGTGGTAGTCCAT 57.334 37.500 16.91 0.00 44.56 3.41
625 631 5.353394 ACATTCGTATGTGGTAGTCCATT 57.647 39.130 6.89 0.00 46.20 3.16
626 632 5.741011 ACATTCGTATGTGGTAGTCCATTT 58.259 37.500 6.89 0.00 46.20 2.32
627 633 5.584649 ACATTCGTATGTGGTAGTCCATTTG 59.415 40.000 6.89 0.00 46.20 2.32
628 634 5.408880 TTCGTATGTGGTAGTCCATTTGA 57.591 39.130 0.00 0.00 46.20 2.69
629 635 5.408880 TCGTATGTGGTAGTCCATTTGAA 57.591 39.130 0.00 0.00 46.20 2.69
630 636 5.795972 TCGTATGTGGTAGTCCATTTGAAA 58.204 37.500 0.00 0.00 46.20 2.69
631 637 6.411376 TCGTATGTGGTAGTCCATTTGAAAT 58.589 36.000 0.00 0.00 46.20 2.17
632 638 6.537301 TCGTATGTGGTAGTCCATTTGAAATC 59.463 38.462 0.00 0.00 46.20 2.17
633 639 6.538742 CGTATGTGGTAGTCCATTTGAAATCT 59.461 38.462 0.00 0.00 46.20 2.40
634 640 7.065803 CGTATGTGGTAGTCCATTTGAAATCTT 59.934 37.037 0.00 0.00 46.20 2.40
635 641 7.781324 ATGTGGTAGTCCATTTGAAATCTTT 57.219 32.000 0.00 0.00 46.20 2.52
636 642 8.877864 ATGTGGTAGTCCATTTGAAATCTTTA 57.122 30.769 0.00 0.00 46.20 1.85
637 643 8.335532 TGTGGTAGTCCATTTGAAATCTTTAG 57.664 34.615 0.00 0.00 46.20 1.85
638 644 8.160765 TGTGGTAGTCCATTTGAAATCTTTAGA 58.839 33.333 0.00 0.00 46.20 2.10
639 645 9.010029 GTGGTAGTCCATTTGAAATCTTTAGAA 57.990 33.333 0.00 0.00 46.20 2.10
640 646 9.581289 TGGTAGTCCATTTGAAATCTTTAGAAA 57.419 29.630 0.00 0.00 39.03 2.52
644 650 9.354673 AGTCCATTTGAAATCTTTAGAAAGACA 57.645 29.630 6.85 0.00 46.80 3.41
645 651 9.965824 GTCCATTTGAAATCTTTAGAAAGACAA 57.034 29.630 6.85 4.98 46.80 3.18
663 669 9.937175 GAAAGACAAATATTTAGAAATCGGAGG 57.063 33.333 0.00 0.00 0.00 4.30
664 670 8.451908 AAGACAAATATTTAGAAATCGGAGGG 57.548 34.615 0.00 0.00 0.00 4.30
665 671 7.802117 AGACAAATATTTAGAAATCGGAGGGA 58.198 34.615 0.00 0.00 0.00 4.20
666 672 7.934120 AGACAAATATTTAGAAATCGGAGGGAG 59.066 37.037 0.00 0.00 0.00 4.30
667 673 7.574607 ACAAATATTTAGAAATCGGAGGGAGT 58.425 34.615 0.00 0.00 0.00 3.85
668 674 8.711170 ACAAATATTTAGAAATCGGAGGGAGTA 58.289 33.333 0.00 0.00 0.00 2.59
890 8219 2.341846 TCTTCCTTCGCAAGTTGGTT 57.658 45.000 4.75 0.00 39.48 3.67
901 8230 2.392613 AAGTTGGTTGCGCGCTCAAG 62.393 55.000 33.29 0.00 0.00 3.02
914 8243 1.517832 CTCAAGGGAGCCGAATCGT 59.482 57.895 0.82 0.00 33.67 3.73
960 8659 1.600107 CCCCCGAACGAAATCCTCA 59.400 57.895 0.00 0.00 0.00 3.86
967 8666 4.156008 CCCGAACGAAATCCTCAAGAAAAT 59.844 41.667 0.00 0.00 0.00 1.82
996 8696 3.363844 GAGCGAGCAGAGGACACCC 62.364 68.421 0.00 0.00 0.00 4.61
1121 8821 2.979678 TCTTCTCCACCAAGGTAAGCTT 59.020 45.455 3.48 3.48 39.02 3.74
1123 8823 1.628846 TCTCCACCAAGGTAAGCTTCC 59.371 52.381 0.00 4.39 39.02 3.46
1124 8824 0.696501 TCCACCAAGGTAAGCTTCCC 59.303 55.000 0.00 0.00 39.02 3.97
1125 8825 0.323451 CCACCAAGGTAAGCTTCCCC 60.323 60.000 0.00 4.37 0.00 4.81
1126 8826 0.323451 CACCAAGGTAAGCTTCCCCC 60.323 60.000 0.00 1.43 0.00 5.40
1344 9053 0.032017 GTTCCCTCCCCTGCTCTCTA 60.032 60.000 0.00 0.00 0.00 2.43
1444 9410 7.986085 TCAATCGATGTATCTGACTATCTGA 57.014 36.000 0.00 0.00 0.00 3.27
1445 9411 7.811653 TCAATCGATGTATCTGACTATCTGAC 58.188 38.462 0.00 0.00 0.00 3.51
1579 9548 2.368548 AGTTTTGTTTCAGAATGCCCCC 59.631 45.455 0.00 0.00 34.76 5.40
1607 9576 4.002982 GTGGTGATGACTGAATGCAAGTA 58.997 43.478 0.00 0.00 0.00 2.24
1613 9582 3.069289 TGACTGAATGCAAGTACAGCAG 58.931 45.455 16.45 7.25 46.36 4.24
1614 9583 3.070018 GACTGAATGCAAGTACAGCAGT 58.930 45.455 16.45 14.38 46.36 4.40
1615 9584 4.245660 GACTGAATGCAAGTACAGCAGTA 58.754 43.478 16.45 6.50 46.36 2.74
1616 9585 4.641396 ACTGAATGCAAGTACAGCAGTAA 58.359 39.130 16.45 8.06 46.36 2.24
1617 9586 4.452455 ACTGAATGCAAGTACAGCAGTAAC 59.548 41.667 16.45 6.02 46.36 2.50
1618 9587 4.641396 TGAATGCAAGTACAGCAGTAACT 58.359 39.130 16.45 0.00 46.36 2.24
1619 9588 5.789521 TGAATGCAAGTACAGCAGTAACTA 58.210 37.500 16.45 2.27 46.36 2.24
1620 9589 6.406370 TGAATGCAAGTACAGCAGTAACTAT 58.594 36.000 16.45 0.00 46.36 2.12
1621 9590 6.878923 TGAATGCAAGTACAGCAGTAACTATT 59.121 34.615 16.45 6.11 46.36 1.73
1622 9591 7.390440 TGAATGCAAGTACAGCAGTAACTATTT 59.610 33.333 16.45 5.51 46.36 1.40
1623 9592 6.721571 TGCAAGTACAGCAGTAACTATTTC 57.278 37.500 8.71 0.00 37.02 2.17
1624 9593 6.227522 TGCAAGTACAGCAGTAACTATTTCA 58.772 36.000 8.71 0.00 37.02 2.69
1625 9594 6.147164 TGCAAGTACAGCAGTAACTATTTCAC 59.853 38.462 8.71 0.00 37.02 3.18
1626 9595 6.369065 GCAAGTACAGCAGTAACTATTTCACT 59.631 38.462 5.55 0.00 30.67 3.41
1627 9596 7.095187 GCAAGTACAGCAGTAACTATTTCACTT 60.095 37.037 5.55 0.00 30.67 3.16
1628 9597 8.774586 CAAGTACAGCAGTAACTATTTCACTTT 58.225 33.333 0.00 0.00 30.67 2.66
1629 9598 8.311650 AGTACAGCAGTAACTATTTCACTTTG 57.688 34.615 0.00 0.00 30.67 2.77
1630 9599 7.931948 AGTACAGCAGTAACTATTTCACTTTGT 59.068 33.333 0.00 0.00 30.67 2.83
1631 9600 7.190920 ACAGCAGTAACTATTTCACTTTGTC 57.809 36.000 0.00 0.00 0.00 3.18
1632 9601 6.765989 ACAGCAGTAACTATTTCACTTTGTCA 59.234 34.615 0.00 0.00 0.00 3.58
1633 9602 7.282224 ACAGCAGTAACTATTTCACTTTGTCAA 59.718 33.333 0.00 0.00 0.00 3.18
1634 9603 8.292448 CAGCAGTAACTATTTCACTTTGTCAAT 58.708 33.333 0.00 0.00 0.00 2.57
1635 9604 8.850156 AGCAGTAACTATTTCACTTTGTCAATT 58.150 29.630 0.00 0.00 0.00 2.32
1636 9605 9.118236 GCAGTAACTATTTCACTTTGTCAATTC 57.882 33.333 0.00 0.00 0.00 2.17
1639 9608 9.612620 GTAACTATTTCACTTTGTCAATTCAGG 57.387 33.333 0.00 0.00 0.00 3.86
1640 9609 7.219484 ACTATTTCACTTTGTCAATTCAGGG 57.781 36.000 0.00 0.00 0.00 4.45
1641 9610 4.935352 TTTCACTTTGTCAATTCAGGGG 57.065 40.909 0.00 0.00 0.00 4.79
1642 9611 2.875296 TCACTTTGTCAATTCAGGGGG 58.125 47.619 0.00 0.00 0.00 5.40
1643 9612 2.445145 TCACTTTGTCAATTCAGGGGGA 59.555 45.455 0.00 0.00 0.00 4.81
1644 9613 2.821969 CACTTTGTCAATTCAGGGGGAG 59.178 50.000 0.00 0.00 0.00 4.30
1645 9614 2.716424 ACTTTGTCAATTCAGGGGGAGA 59.284 45.455 0.00 0.00 0.00 3.71
1646 9615 3.140144 ACTTTGTCAATTCAGGGGGAGAA 59.860 43.478 0.00 0.00 0.00 2.87
1647 9616 4.202716 ACTTTGTCAATTCAGGGGGAGAAT 60.203 41.667 0.00 0.00 37.30 2.40
1654 9623 3.713826 TTCAGGGGGAGAATGTTACAC 57.286 47.619 0.00 0.00 0.00 2.90
1690 9660 3.197790 CTCCCCAATCGCTGCACG 61.198 66.667 0.00 2.79 45.62 5.34
1742 9726 2.239654 TGTTGGATTCTCTGGTGATCCC 59.760 50.000 0.00 0.00 0.00 3.85
1744 9728 0.394565 GGATTCTCTGGTGATCCCCG 59.605 60.000 0.00 0.00 0.00 5.73
1821 9805 6.300354 AGTAATTCCAATATGCGTGCTTAC 57.700 37.500 0.00 0.00 0.00 2.34
1825 9809 4.875544 TCCAATATGCGTGCTTACTTTC 57.124 40.909 0.00 0.00 0.00 2.62
1869 9853 8.442632 TTTTTCAACTGATGATAGCCTGATAG 57.557 34.615 0.00 0.00 38.03 2.08
1933 9917 7.462109 TTTATGTGCTGTTTTTGTTCATGTC 57.538 32.000 0.00 0.00 0.00 3.06
2161 10147 6.535508 GGAGAGTCTGTTAATGTCATGGTTAC 59.464 42.308 0.00 0.00 0.00 2.50
2308 10297 3.891049 AGCATAAGACAATCAGAACCCC 58.109 45.455 0.00 0.00 0.00 4.95
2321 10310 0.732571 GAACCCCGTGTGCATATGTG 59.267 55.000 4.29 0.00 0.00 3.21
2367 10356 6.627690 CATGCTTTCATGTTTTCTGATGAC 57.372 37.500 0.00 0.00 43.85 3.06
2462 10461 6.657541 AGTTATGGTGTGTTTATAACAGTGGG 59.342 38.462 0.00 0.00 43.10 4.61
2472 10472 7.013559 GTGTTTATAACAGTGGGGTTTACACTT 59.986 37.037 0.00 0.00 46.38 3.16
2490 10490 4.201910 ACACTTTGATGGTCACAACTTTCG 60.202 41.667 0.00 0.00 0.00 3.46
2543 10543 1.687563 TCATTCTAGACGGCGGATCA 58.312 50.000 13.24 0.00 0.00 2.92
2746 10753 3.003275 CACTGCATTGACAACTACGGTTT 59.997 43.478 0.00 0.00 32.73 3.27
2774 10781 7.998383 TGGGTATGTTCATGCTGTTCTTAATAT 59.002 33.333 0.00 0.00 0.00 1.28
2775 10782 9.502091 GGGTATGTTCATGCTGTTCTTAATATA 57.498 33.333 0.00 0.00 0.00 0.86
2809 10816 8.017418 ACTGTGATCCAAACCTTTTTCAATAA 57.983 30.769 0.00 0.00 0.00 1.40
2955 10962 4.638865 TGCCTCAACTCTCAATCAATCATG 59.361 41.667 0.00 0.00 0.00 3.07
3002 11144 3.927142 GGCTGTAACACTGACATACTGAC 59.073 47.826 0.00 0.00 0.00 3.51
3032 11174 7.702348 GGATGTGAATGCCTATTTACTTTTGTC 59.298 37.037 0.00 0.00 34.77 3.18
3053 11195 6.539324 TGTCTTATTTTATCGGTTGCTTTCG 58.461 36.000 0.00 0.00 0.00 3.46
3067 11209 6.362283 CGGTTGCTTTCGAGTTTATTTTTCAT 59.638 34.615 0.00 0.00 0.00 2.57
3101 11243 9.868277 AGAGATAGTATTTAATATCACAGCTGC 57.132 33.333 15.27 0.00 36.14 5.25
3137 11279 2.027100 GCTCCAACTTAGTGTAGCCCTT 60.027 50.000 3.41 0.00 0.00 3.95
3173 11315 4.487714 TTAGTTGAATACCCTGCTCCAG 57.512 45.455 0.00 0.00 0.00 3.86
3196 11338 4.997395 GCTATACACATTACTGGGACATGG 59.003 45.833 0.00 0.00 38.20 3.66
3202 11344 4.706476 CACATTACTGGGACATGGACAAAT 59.294 41.667 0.00 0.00 38.20 2.32
3203 11345 5.885352 CACATTACTGGGACATGGACAAATA 59.115 40.000 0.00 0.00 38.20 1.40
3216 11358 7.096551 ACATGGACAAATAACATAGTTTTGCC 58.903 34.615 0.00 0.00 34.47 4.52
3219 11361 5.798434 GGACAAATAACATAGTTTTGCCGTC 59.202 40.000 0.00 0.00 34.47 4.79
3226 11368 3.689649 ACATAGTTTTGCCGTCATCTTCC 59.310 43.478 0.00 0.00 0.00 3.46
3227 11369 2.568623 AGTTTTGCCGTCATCTTCCT 57.431 45.000 0.00 0.00 0.00 3.36
3362 11504 5.912955 GGGTTATTTTATCGATTGCTTTCGG 59.087 40.000 1.71 0.00 39.56 4.30
3369 11511 1.735571 TCGATTGCTTTCGGGTTTAGC 59.264 47.619 8.62 0.00 39.56 3.09
3386 11528 7.307692 CGGGTTTAGCTTTAATTTTGTGCAAAT 60.308 33.333 0.00 0.00 36.57 2.32
3388 11530 9.805966 GGTTTAGCTTTAATTTTGTGCAAATAC 57.194 29.630 0.00 0.00 33.60 1.89
3442 11591 1.152777 CCAACTTGGCACCACCTGA 60.153 57.895 0.00 0.00 40.22 3.86
3473 11622 8.244113 GCATAAAGGCAAAATTGTAGTAGTTCT 58.756 33.333 0.00 0.00 0.00 3.01
3474 11623 9.559958 CATAAAGGCAAAATTGTAGTAGTTCTG 57.440 33.333 0.00 0.00 0.00 3.02
3475 11624 7.817418 AAAGGCAAAATTGTAGTAGTTCTGA 57.183 32.000 0.00 0.00 0.00 3.27
3479 11628 6.128254 GGCAAAATTGTAGTAGTTCTGACTCC 60.128 42.308 0.00 0.00 37.33 3.85
3484 11633 4.586884 TGTAGTAGTTCTGACTCCGATGT 58.413 43.478 0.00 0.00 37.33 3.06
3487 11636 2.086054 AGTTCTGACTCCGATGTTGC 57.914 50.000 0.00 0.00 0.00 4.17
3491 11640 2.107366 TCTGACTCCGATGTTGCCATA 58.893 47.619 0.00 0.00 0.00 2.74
3500 11649 7.224297 ACTCCGATGTTGCCATATATTTAGTT 58.776 34.615 0.00 0.00 0.00 2.24
3517 11666 1.850345 AGTTGAACACCCTCCTCCAAA 59.150 47.619 0.00 0.00 0.00 3.28
3520 11669 3.713826 TGAACACCCTCCTCCAAATAC 57.286 47.619 0.00 0.00 0.00 1.89
3523 11672 3.933861 ACACCCTCCTCCAAATACATC 57.066 47.619 0.00 0.00 0.00 3.06
3529 11678 4.506271 CCCTCCTCCAAATACATCCATCAG 60.506 50.000 0.00 0.00 0.00 2.90
3540 11689 0.179037 ATCCATCAGTGGGACATGCG 60.179 55.000 0.00 0.00 46.06 4.73
3569 11718 2.736144 TAGTTTCGCCGTGATTCTGT 57.264 45.000 0.00 0.00 0.00 3.41
3571 11720 3.034721 AGTTTCGCCGTGATTCTGTAA 57.965 42.857 0.00 0.00 0.00 2.41
3574 11723 4.088648 GTTTCGCCGTGATTCTGTAAATG 58.911 43.478 0.00 0.00 0.00 2.32
3601 11752 8.600449 TCCGAATTTTGAAAAACATGCTAAAT 57.400 26.923 0.00 0.00 0.00 1.40
3634 11785 4.437930 CGCCTCAGTTCCTTTGAATCAATC 60.438 45.833 0.00 0.00 31.98 2.67
3692 11843 5.304357 TCTGCCGTGAATCTTAGAATCCATA 59.696 40.000 0.00 0.00 0.00 2.74
3700 11851 8.200792 GTGAATCTTAGAATCCATACTGACACT 58.799 37.037 0.00 0.00 0.00 3.55
3710 11861 3.612860 CCATACTGACACTAACGCTCAAC 59.387 47.826 0.00 0.00 0.00 3.18
3716 11867 5.105716 ACTGACACTAACGCTCAACTATCAT 60.106 40.000 0.00 0.00 0.00 2.45
3719 11870 5.479306 ACACTAACGCTCAACTATCATTGT 58.521 37.500 0.00 0.00 0.00 2.71
3720 11871 5.932303 ACACTAACGCTCAACTATCATTGTT 59.068 36.000 0.00 0.00 0.00 2.83
3721 11872 7.094631 ACACTAACGCTCAACTATCATTGTTA 58.905 34.615 0.00 0.00 0.00 2.41
3722 11873 7.764443 ACACTAACGCTCAACTATCATTGTTAT 59.236 33.333 0.00 0.00 0.00 1.89
3723 11874 9.244799 CACTAACGCTCAACTATCATTGTTATA 57.755 33.333 0.00 0.00 0.00 0.98
3724 11875 9.982651 ACTAACGCTCAACTATCATTGTTATAT 57.017 29.630 0.00 0.00 0.00 0.86
3763 11914 2.158475 TGAAGGATGAAACCTGCCAACT 60.158 45.455 0.00 0.00 40.49 3.16
3911 12062 1.302033 CAGCAAGCTGAGAACCCGT 60.302 57.895 16.75 0.00 46.30 5.28
3944 12095 2.507992 CACGCCTCCAAGAGCTCG 60.508 66.667 8.37 0.00 33.12 5.03
4001 12170 1.079073 AATCAACAAGGGCCAGGGG 59.921 57.895 6.18 0.00 0.00 4.79
4022 12191 1.160137 CAGAGGCCCTTTCGAACAAG 58.840 55.000 0.00 0.00 0.00 3.16
4041 12210 3.777925 CGGCCTCTGCGAACGTTG 61.778 66.667 5.00 0.00 38.85 4.10
4140 12313 3.444742 GGAAACAATCATGATGTGCCTGA 59.555 43.478 9.46 0.00 0.00 3.86
4145 12318 5.687780 ACAATCATGATGTGCCTGAGAATA 58.312 37.500 9.46 0.00 0.00 1.75
4155 12336 2.293170 GCCTGAGAATAGAGGGCAAAC 58.707 52.381 0.00 0.00 42.08 2.93
4173 12354 5.210715 GCAAACATGCTAAGATGATGTAGC 58.789 41.667 0.00 0.00 42.56 3.58
4176 12357 7.254898 GCAAACATGCTAAGATGATGTAGCTTA 60.255 37.037 0.00 0.00 42.67 3.09
4177 12358 8.781196 CAAACATGCTAAGATGATGTAGCTTAT 58.219 33.333 0.00 0.00 42.67 1.73
4181 12365 7.054491 TGCTAAGATGATGTAGCTTATGTGA 57.946 36.000 0.00 0.00 42.67 3.58
4188 12372 3.981071 TGTAGCTTATGTGAACTGGCT 57.019 42.857 0.00 0.00 0.00 4.75
4243 12458 4.814771 GGTGGATAATTTTGTAGCGCTAGT 59.185 41.667 19.48 0.00 0.00 2.57
4244 12459 5.277345 GGTGGATAATTTTGTAGCGCTAGTG 60.277 44.000 19.48 0.00 0.00 2.74
4245 12460 4.814234 TGGATAATTTTGTAGCGCTAGTGG 59.186 41.667 19.48 0.00 0.00 4.00
4246 12461 4.213482 GGATAATTTTGTAGCGCTAGTGGG 59.787 45.833 19.48 0.00 0.00 4.61
4286 12502 2.947652 TGATAAGTACTTCCTCCGTCCG 59.052 50.000 12.39 0.00 0.00 4.79
4292 12508 1.856629 ACTTCCTCCGTCCGGAAATA 58.143 50.000 5.23 0.00 44.66 1.40
4298 12514 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
4299 12515 1.894466 TCCGTCCGGAAATACTTGTCA 59.106 47.619 5.23 0.00 42.05 3.58
4301 12517 2.864343 CCGTCCGGAAATACTTGTCATC 59.136 50.000 5.23 0.00 37.50 2.92
4302 12518 3.517602 CGTCCGGAAATACTTGTCATCA 58.482 45.455 5.23 0.00 0.00 3.07
4304 12520 4.390603 CGTCCGGAAATACTTGTCATCAAA 59.609 41.667 5.23 0.00 32.87 2.69
4305 12521 5.106869 CGTCCGGAAATACTTGTCATCAAAA 60.107 40.000 5.23 0.00 32.87 2.44
4306 12522 6.403200 CGTCCGGAAATACTTGTCATCAAAAT 60.403 38.462 5.23 0.00 32.87 1.82
4308 12524 6.035843 CCGGAAATACTTGTCATCAAAATGG 58.964 40.000 0.00 0.00 33.42 3.16
4309 12525 6.127758 CCGGAAATACTTGTCATCAAAATGGA 60.128 38.462 0.00 0.00 33.42 3.41
4317 12533 8.421249 ACTTGTCATCAAAATGGATAAAAGGA 57.579 30.769 0.00 0.00 33.42 3.36
4381 12597 9.829507 TTTTTGTCCATTTTGATGACAAGTATT 57.170 25.926 0.00 0.00 37.13 1.89
4382 12598 9.829507 TTTTGTCCATTTTGATGACAAGTATTT 57.170 25.926 0.00 0.00 37.13 1.40
4383 12599 9.829507 TTTGTCCATTTTGATGACAAGTATTTT 57.170 25.926 0.00 0.00 37.13 1.82
4384 12600 9.474920 TTGTCCATTTTGATGACAAGTATTTTC 57.525 29.630 0.00 0.00 37.32 2.29
4385 12601 8.087750 TGTCCATTTTGATGACAAGTATTTTCC 58.912 33.333 0.00 0.00 37.32 3.13
4386 12602 7.273381 GTCCATTTTGATGACAAGTATTTTCCG 59.727 37.037 0.00 0.00 37.32 4.30
4387 12603 7.175816 TCCATTTTGATGACAAGTATTTTCCGA 59.824 33.333 0.00 0.00 37.32 4.55
4388 12604 7.273381 CCATTTTGATGACAAGTATTTTCCGAC 59.727 37.037 0.00 0.00 37.32 4.79
4389 12605 5.524511 TTGATGACAAGTATTTTCCGACG 57.475 39.130 0.00 0.00 0.00 5.12
4390 12606 3.930229 TGATGACAAGTATTTTCCGACGG 59.070 43.478 7.84 7.84 0.00 4.79
4391 12607 3.663995 TGACAAGTATTTTCCGACGGA 57.336 42.857 13.88 13.88 0.00 4.69
4392 12608 3.581755 TGACAAGTATTTTCCGACGGAG 58.418 45.455 17.51 5.32 31.21 4.63
4393 12609 2.928116 GACAAGTATTTTCCGACGGAGG 59.072 50.000 17.51 3.47 31.21 4.30
4394 12610 2.277084 CAAGTATTTTCCGACGGAGGG 58.723 52.381 17.51 0.00 31.21 4.30
4413 12629 0.824759 GAGTAACAGACGGGGCTGAT 59.175 55.000 8.86 0.00 39.20 2.90
4435 12651 2.738964 GCACCGTAGTCCTGAAATCCTC 60.739 54.545 0.00 0.00 0.00 3.71
4464 12680 0.384230 GTGTCGTCGCCATGTGTTTG 60.384 55.000 0.00 0.00 0.00 2.93
4496 12712 1.396996 GCTCGTCGCCATATTTGTGTT 59.603 47.619 0.00 0.00 0.00 3.32
4509 12725 7.483307 CCATATTTGTGTTTGGATAACTCAGG 58.517 38.462 0.00 0.00 0.00 3.86
4525 12741 3.134127 GGATGCGGTTGCCTGGTC 61.134 66.667 0.00 0.00 41.78 4.02
4539 12759 2.819595 GGTCGTGGCATGCGTGAT 60.820 61.111 12.44 0.00 0.00 3.06
4540 12760 1.520564 GGTCGTGGCATGCGTGATA 60.521 57.895 12.44 0.00 0.00 2.15
4541 12761 1.636340 GTCGTGGCATGCGTGATAC 59.364 57.895 12.44 6.51 0.00 2.24
4542 12762 0.806102 GTCGTGGCATGCGTGATACT 60.806 55.000 12.44 0.00 0.00 2.12
4555 12868 3.250280 GCGTGATACTCTAGTTCCGATGA 59.750 47.826 0.00 0.00 0.00 2.92
4556 12869 4.611807 GCGTGATACTCTAGTTCCGATGAG 60.612 50.000 0.00 0.00 0.00 2.90
4557 12870 4.611807 CGTGATACTCTAGTTCCGATGAGC 60.612 50.000 0.00 0.00 0.00 4.26
4558 12871 3.498777 TGATACTCTAGTTCCGATGAGCG 59.501 47.826 0.00 0.00 40.47 5.03
4578 12891 2.969238 CCCATGCCGATCGTGCTC 60.969 66.667 22.99 8.12 0.00 4.26
4581 12894 3.469970 ATGCCGATCGTGCTCCCA 61.470 61.111 22.99 8.75 0.00 4.37
4597 12910 2.743928 CAGGCGGCTCACAACCTC 60.744 66.667 9.32 0.00 0.00 3.85
4656 12969 4.363990 CGTGCGCCACCTCTCACT 62.364 66.667 4.18 0.00 0.00 3.41
4659 12972 2.210013 TGCGCCACCTCTCACTCTT 61.210 57.895 4.18 0.00 0.00 2.85
4664 12977 0.397941 CCACCTCTCACTCTTTGCCA 59.602 55.000 0.00 0.00 0.00 4.92
4674 12987 0.030638 CTCTTTGCCACAACCCGTTG 59.969 55.000 6.03 6.03 45.58 4.10
4734 13056 0.179137 CACTAGCGATCAACCAGCGA 60.179 55.000 0.00 0.00 35.78 4.93
4907 13249 2.807895 CCCGCGCGAATATACCCG 60.808 66.667 34.63 10.97 0.00 5.28
4933 13283 1.538135 ACCACTCCCCACTACCCAC 60.538 63.158 0.00 0.00 0.00 4.61
4958 13315 4.457496 CCGCGCCCATCTCACACT 62.457 66.667 0.00 0.00 0.00 3.55
4959 13316 3.190849 CGCGCCCATCTCACACTG 61.191 66.667 0.00 0.00 0.00 3.66
4963 13331 2.042831 GCCCATCTCACACTGCCAC 61.043 63.158 0.00 0.00 0.00 5.01
4964 13332 1.742880 CCCATCTCACACTGCCACG 60.743 63.158 0.00 0.00 0.00 4.94
4992 13360 3.944087 GAAAATATCCATCCCCTCTCCG 58.056 50.000 0.00 0.00 0.00 4.63
4993 13361 1.280457 AATATCCATCCCCTCTCCGC 58.720 55.000 0.00 0.00 0.00 5.54
4994 13362 0.117140 ATATCCATCCCCTCTCCGCA 59.883 55.000 0.00 0.00 0.00 5.69
4995 13363 0.832135 TATCCATCCCCTCTCCGCAC 60.832 60.000 0.00 0.00 0.00 5.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.947115 CATCATTCAATATGCAGATGATACTGT 58.053 33.333 0.00 0.00 39.73 3.55
1 2 8.947115 ACATCATTCAATATGCAGATGATACTG 58.053 33.333 13.39 0.20 37.05 2.74
2 3 8.947115 CACATCATTCAATATGCAGATGATACT 58.053 33.333 13.39 0.00 37.05 2.12
3 4 7.696872 GCACATCATTCAATATGCAGATGATAC 59.303 37.037 13.39 1.66 37.05 2.24
4 5 7.610305 AGCACATCATTCAATATGCAGATGATA 59.390 33.333 13.39 0.00 37.05 2.15
5 6 6.434340 AGCACATCATTCAATATGCAGATGAT 59.566 34.615 13.39 2.50 37.05 2.45
6 7 5.768164 AGCACATCATTCAATATGCAGATGA 59.232 36.000 13.39 5.27 37.05 2.92
7 8 6.013842 AGCACATCATTCAATATGCAGATG 57.986 37.500 0.00 0.43 38.92 2.90
8 9 7.610305 TGATAGCACATCATTCAATATGCAGAT 59.390 33.333 0.00 0.00 35.51 2.90
9 10 6.938030 TGATAGCACATCATTCAATATGCAGA 59.062 34.615 0.00 0.00 35.51 4.26
10 11 7.141100 TGATAGCACATCATTCAATATGCAG 57.859 36.000 0.00 0.00 35.51 4.41
11 12 7.392113 TCATGATAGCACATCATTCAATATGCA 59.608 33.333 10.25 0.00 36.69 3.96
12 13 7.758495 TCATGATAGCACATCATTCAATATGC 58.242 34.615 10.25 0.00 36.69 3.14
13 14 7.910683 GCTCATGATAGCACATCATTCAATATG 59.089 37.037 10.25 1.75 42.30 1.78
14 15 7.986562 GCTCATGATAGCACATCATTCAATAT 58.013 34.615 10.25 0.00 42.30 1.28
15 16 7.373778 GCTCATGATAGCACATCATTCAATA 57.626 36.000 10.25 0.00 42.30 1.90
16 17 6.255596 GCTCATGATAGCACATCATTCAAT 57.744 37.500 10.25 0.00 42.30 2.57
17 18 5.684550 GCTCATGATAGCACATCATTCAA 57.315 39.130 10.25 1.31 42.30 2.69
28 29 4.599047 AGTAGGTCTTGCTCATGATAGC 57.401 45.455 0.00 0.00 43.08 2.97
31 32 9.499479 CATTTATTAGTAGGTCTTGCTCATGAT 57.501 33.333 0.00 0.00 0.00 2.45
32 33 8.704668 TCATTTATTAGTAGGTCTTGCTCATGA 58.295 33.333 0.00 0.00 0.00 3.07
33 34 8.893219 TCATTTATTAGTAGGTCTTGCTCATG 57.107 34.615 0.00 0.00 0.00 3.07
34 35 9.499479 CATCATTTATTAGTAGGTCTTGCTCAT 57.501 33.333 0.00 0.00 0.00 2.90
35 36 8.486210 ACATCATTTATTAGTAGGTCTTGCTCA 58.514 33.333 0.00 0.00 0.00 4.26
150 151 9.490379 ACTAGTATATTTCCGCAGAATAAAAGG 57.510 33.333 0.00 0.00 0.00 3.11
211 212 5.939764 AAGACATCACATCAGTTAGGCTA 57.060 39.130 0.00 0.00 0.00 3.93
220 225 8.620116 TGTATTTTGAGAAAGACATCACATCA 57.380 30.769 0.00 0.00 40.82 3.07
330 335 6.327934 TGGTAGTCGCTCAAGTTTATTACTC 58.672 40.000 0.00 0.00 35.54 2.59
402 407 2.632377 CTCGCCACAATCACTACCAAT 58.368 47.619 0.00 0.00 0.00 3.16
410 415 1.407299 CCATCTTCCTCGCCACAATCA 60.407 52.381 0.00 0.00 0.00 2.57
505 511 4.161754 ACAAGTATTTAGGAACGGAGGGAG 59.838 45.833 0.00 0.00 0.00 4.30
507 513 4.161754 AGACAAGTATTTAGGAACGGAGGG 59.838 45.833 0.00 0.00 0.00 4.30
508 514 5.340439 AGACAAGTATTTAGGAACGGAGG 57.660 43.478 0.00 0.00 0.00 4.30
509 515 7.097834 AGAAAGACAAGTATTTAGGAACGGAG 58.902 38.462 0.00 0.00 0.00 4.63
510 516 7.001099 AGAAAGACAAGTATTTAGGAACGGA 57.999 36.000 0.00 0.00 0.00 4.69
511 517 8.248945 TCTAGAAAGACAAGTATTTAGGAACGG 58.751 37.037 0.00 0.00 0.00 4.44
512 518 9.291664 CTCTAGAAAGACAAGTATTTAGGAACG 57.708 37.037 0.00 0.00 0.00 3.95
547 553 8.942338 TCATTTTGCTTCGTATATAGTCACTT 57.058 30.769 0.00 0.00 0.00 3.16
548 554 8.198109 ACTCATTTTGCTTCGTATATAGTCACT 58.802 33.333 0.00 0.00 0.00 3.41
549 555 8.269424 CACTCATTTTGCTTCGTATATAGTCAC 58.731 37.037 0.00 0.00 0.00 3.67
550 556 8.194769 TCACTCATTTTGCTTCGTATATAGTCA 58.805 33.333 0.00 0.00 0.00 3.41
551 557 8.575565 TCACTCATTTTGCTTCGTATATAGTC 57.424 34.615 0.00 0.00 0.00 2.59
552 558 8.942338 TTCACTCATTTTGCTTCGTATATAGT 57.058 30.769 0.00 0.00 0.00 2.12
554 560 9.764363 AGATTCACTCATTTTGCTTCGTATATA 57.236 29.630 0.00 0.00 0.00 0.86
555 561 8.668510 AGATTCACTCATTTTGCTTCGTATAT 57.331 30.769 0.00 0.00 0.00 0.86
556 562 9.031360 GTAGATTCACTCATTTTGCTTCGTATA 57.969 33.333 0.00 0.00 0.00 1.47
557 563 6.992063 AGATTCACTCATTTTGCTTCGTAT 57.008 33.333 0.00 0.00 0.00 3.06
558 564 6.871492 TGTAGATTCACTCATTTTGCTTCGTA 59.129 34.615 0.00 0.00 0.00 3.43
559 565 5.700832 TGTAGATTCACTCATTTTGCTTCGT 59.299 36.000 0.00 0.00 0.00 3.85
560 566 6.169419 TGTAGATTCACTCATTTTGCTTCG 57.831 37.500 0.00 0.00 0.00 3.79
561 567 8.025445 ACATTGTAGATTCACTCATTTTGCTTC 58.975 33.333 0.00 0.00 0.00 3.86
562 568 7.889469 ACATTGTAGATTCACTCATTTTGCTT 58.111 30.769 0.00 0.00 0.00 3.91
563 569 7.458409 ACATTGTAGATTCACTCATTTTGCT 57.542 32.000 0.00 0.00 0.00 3.91
564 570 9.624697 TTTACATTGTAGATTCACTCATTTTGC 57.375 29.630 0.00 0.00 0.00 3.68
594 600 9.511272 ACTACCACATACGAATGTATATAGACA 57.489 33.333 2.07 2.07 44.70 3.41
595 601 9.985318 GACTACCACATACGAATGTATATAGAC 57.015 37.037 0.00 0.00 44.70 2.59
596 602 9.170734 GGACTACCACATACGAATGTATATAGA 57.829 37.037 0.00 0.00 44.70 1.98
597 603 8.953313 TGGACTACCACATACGAATGTATATAG 58.047 37.037 0.00 0.00 44.70 1.31
598 604 8.866970 TGGACTACCACATACGAATGTATATA 57.133 34.615 0.00 0.00 44.70 0.86
599 605 7.770366 TGGACTACCACATACGAATGTATAT 57.230 36.000 0.00 0.00 44.70 0.86
618 624 9.354673 TGTCTTTCTAAAGATTTCAAATGGACT 57.645 29.630 8.31 0.00 45.83 3.85
619 625 9.965824 TTGTCTTTCTAAAGATTTCAAATGGAC 57.034 29.630 8.31 0.00 45.83 4.02
637 643 9.937175 CCTCCGATTTCTAAATATTTGTCTTTC 57.063 33.333 11.05 2.40 0.00 2.62
638 644 8.903820 CCCTCCGATTTCTAAATATTTGTCTTT 58.096 33.333 11.05 0.00 0.00 2.52
639 645 8.272173 TCCCTCCGATTTCTAAATATTTGTCTT 58.728 33.333 11.05 0.00 0.00 3.01
640 646 7.802117 TCCCTCCGATTTCTAAATATTTGTCT 58.198 34.615 11.05 0.00 0.00 3.41
641 647 7.715686 ACTCCCTCCGATTTCTAAATATTTGTC 59.284 37.037 11.05 1.28 0.00 3.18
642 648 7.574607 ACTCCCTCCGATTTCTAAATATTTGT 58.425 34.615 11.05 0.00 0.00 2.83
643 649 9.726438 ATACTCCCTCCGATTTCTAAATATTTG 57.274 33.333 11.05 1.65 0.00 2.32
647 653 9.597681 ACTAATACTCCCTCCGATTTCTAAATA 57.402 33.333 0.00 0.00 0.00 1.40
648 654 8.493787 ACTAATACTCCCTCCGATTTCTAAAT 57.506 34.615 0.00 0.00 0.00 1.40
649 655 7.909485 ACTAATACTCCCTCCGATTTCTAAA 57.091 36.000 0.00 0.00 0.00 1.85
650 656 7.909485 AACTAATACTCCCTCCGATTTCTAA 57.091 36.000 0.00 0.00 0.00 2.10
651 657 7.909485 AAACTAATACTCCCTCCGATTTCTA 57.091 36.000 0.00 0.00 0.00 2.10
652 658 6.809976 AAACTAATACTCCCTCCGATTTCT 57.190 37.500 0.00 0.00 0.00 2.52
653 659 7.495055 TGTAAACTAATACTCCCTCCGATTTC 58.505 38.462 0.00 0.00 0.00 2.17
654 660 7.427989 TGTAAACTAATACTCCCTCCGATTT 57.572 36.000 0.00 0.00 0.00 2.17
655 661 7.427989 TTGTAAACTAATACTCCCTCCGATT 57.572 36.000 0.00 0.00 0.00 3.34
656 662 7.418712 CCTTTGTAAACTAATACTCCCTCCGAT 60.419 40.741 0.00 0.00 0.00 4.18
657 663 6.127253 CCTTTGTAAACTAATACTCCCTCCGA 60.127 42.308 0.00 0.00 0.00 4.55
658 664 6.047231 CCTTTGTAAACTAATACTCCCTCCG 58.953 44.000 0.00 0.00 0.00 4.63
659 665 6.157471 TCCCTTTGTAAACTAATACTCCCTCC 59.843 42.308 0.00 0.00 0.00 4.30
660 666 7.092979 ACTCCCTTTGTAAACTAATACTCCCTC 60.093 40.741 0.00 0.00 0.00 4.30
661 667 6.734281 ACTCCCTTTGTAAACTAATACTCCCT 59.266 38.462 0.00 0.00 0.00 4.20
662 668 6.955364 ACTCCCTTTGTAAACTAATACTCCC 58.045 40.000 0.00 0.00 0.00 4.30
663 669 8.756927 AGTACTCCCTTTGTAAACTAATACTCC 58.243 37.037 0.00 0.00 0.00 3.85
664 670 9.583765 CAGTACTCCCTTTGTAAACTAATACTC 57.416 37.037 0.00 0.00 0.00 2.59
665 671 9.317827 TCAGTACTCCCTTTGTAAACTAATACT 57.682 33.333 0.00 0.00 0.00 2.12
960 8659 3.377172 CGCTCGGTGGGATTTATTTTCTT 59.623 43.478 0.00 0.00 0.00 2.52
967 8666 1.143183 GCTCGCTCGGTGGGATTTA 59.857 57.895 0.00 0.00 37.01 1.40
1199 8900 1.133025 GGCATCAAAACCAGATCACGG 59.867 52.381 0.00 0.00 0.00 4.94
1322 9025 1.920835 GAGCAGGGGAGGGAACAGT 60.921 63.158 0.00 0.00 0.00 3.55
1444 9410 2.036475 ACAACTGCATCACTCTCTTCGT 59.964 45.455 0.00 0.00 0.00 3.85
1445 9411 2.411069 CACAACTGCATCACTCTCTTCG 59.589 50.000 0.00 0.00 0.00 3.79
1534 9503 2.741486 TAAGTGCAGCCGTGGTTCCC 62.741 60.000 0.00 0.00 0.00 3.97
1551 9520 6.208644 GCATTCTGAAACAAAACTGCTCTAA 58.791 36.000 0.00 0.00 0.00 2.10
1580 9549 3.428452 GCATTCAGTCATCACCACCAATG 60.428 47.826 0.00 0.00 0.00 2.82
1607 9576 6.765989 TGACAAAGTGAAATAGTTACTGCTGT 59.234 34.615 0.66 0.66 0.00 4.40
1613 9582 9.612620 CCTGAATTGACAAAGTGAAATAGTTAC 57.387 33.333 0.00 0.00 0.00 2.50
1614 9583 8.792633 CCCTGAATTGACAAAGTGAAATAGTTA 58.207 33.333 0.00 0.00 0.00 2.24
1615 9584 7.255942 CCCCTGAATTGACAAAGTGAAATAGTT 60.256 37.037 0.00 0.00 0.00 2.24
1616 9585 6.209391 CCCCTGAATTGACAAAGTGAAATAGT 59.791 38.462 0.00 0.00 0.00 2.12
1617 9586 6.350445 CCCCCTGAATTGACAAAGTGAAATAG 60.350 42.308 0.00 0.00 0.00 1.73
1618 9587 5.480073 CCCCCTGAATTGACAAAGTGAAATA 59.520 40.000 0.00 0.00 0.00 1.40
1619 9588 4.284234 CCCCCTGAATTGACAAAGTGAAAT 59.716 41.667 0.00 0.00 0.00 2.17
1620 9589 3.640967 CCCCCTGAATTGACAAAGTGAAA 59.359 43.478 0.00 0.00 0.00 2.69
1621 9590 3.117322 TCCCCCTGAATTGACAAAGTGAA 60.117 43.478 0.00 0.00 0.00 3.18
1622 9591 2.445145 TCCCCCTGAATTGACAAAGTGA 59.555 45.455 0.00 0.00 0.00 3.41
1623 9592 2.821969 CTCCCCCTGAATTGACAAAGTG 59.178 50.000 0.00 0.00 0.00 3.16
1624 9593 2.716424 TCTCCCCCTGAATTGACAAAGT 59.284 45.455 0.00 0.00 0.00 2.66
1625 9594 3.439857 TCTCCCCCTGAATTGACAAAG 57.560 47.619 0.00 0.00 0.00 2.77
1626 9595 3.893753 TTCTCCCCCTGAATTGACAAA 57.106 42.857 0.00 0.00 0.00 2.83
1627 9596 3.075882 ACATTCTCCCCCTGAATTGACAA 59.924 43.478 0.00 0.00 32.47 3.18
1628 9597 2.649312 ACATTCTCCCCCTGAATTGACA 59.351 45.455 0.00 0.00 32.47 3.58
1629 9598 3.372440 ACATTCTCCCCCTGAATTGAC 57.628 47.619 0.00 0.00 32.47 3.18
1630 9599 4.290985 TGTAACATTCTCCCCCTGAATTGA 59.709 41.667 0.00 0.00 32.47 2.57
1631 9600 4.399303 GTGTAACATTCTCCCCCTGAATTG 59.601 45.833 0.00 0.00 36.32 2.32
1632 9601 4.292306 AGTGTAACATTCTCCCCCTGAATT 59.708 41.667 0.00 0.00 41.43 2.17
1633 9602 3.852578 AGTGTAACATTCTCCCCCTGAAT 59.147 43.478 0.00 0.00 41.43 2.57
1634 9603 3.256704 AGTGTAACATTCTCCCCCTGAA 58.743 45.455 0.00 0.00 41.43 3.02
1635 9604 2.838202 GAGTGTAACATTCTCCCCCTGA 59.162 50.000 0.00 0.00 41.43 3.86
1636 9605 2.840651 AGAGTGTAACATTCTCCCCCTG 59.159 50.000 0.00 0.00 41.43 4.45
1637 9606 3.207044 AGAGTGTAACATTCTCCCCCT 57.793 47.619 0.00 0.00 41.43 4.79
1638 9607 5.632034 ATTAGAGTGTAACATTCTCCCCC 57.368 43.478 0.00 0.00 41.43 5.40
1639 9608 6.650120 TCAATTAGAGTGTAACATTCTCCCC 58.350 40.000 0.00 0.00 41.43 4.81
1640 9609 7.987458 TCATCAATTAGAGTGTAACATTCTCCC 59.013 37.037 0.00 0.00 41.43 4.30
1641 9610 8.948631 TCATCAATTAGAGTGTAACATTCTCC 57.051 34.615 0.00 0.00 41.43 3.71
1642 9611 9.593134 ACTCATCAATTAGAGTGTAACATTCTC 57.407 33.333 6.59 0.00 43.09 2.87
1643 9612 9.950496 AACTCATCAATTAGAGTGTAACATTCT 57.050 29.630 7.80 0.00 43.88 2.40
1654 9623 6.886459 TGGGGAGAAAAACTCATCAATTAGAG 59.114 38.462 0.00 0.00 46.54 2.43
1732 9716 0.909623 ACTAAACCGGGGATCACCAG 59.090 55.000 16.00 4.93 42.91 4.00
1742 9726 3.328382 TCCACATCTCAACTAAACCGG 57.672 47.619 0.00 0.00 0.00 5.28
1744 9728 6.465084 AGTAGTTCCACATCTCAACTAAACC 58.535 40.000 0.00 0.00 35.03 3.27
1862 9846 0.546598 ACGAAAAGGGGCCTATCAGG 59.453 55.000 0.84 0.00 38.80 3.86
1863 9847 1.065418 ACACGAAAAGGGGCCTATCAG 60.065 52.381 0.84 0.00 0.00 2.90
1864 9848 0.988832 ACACGAAAAGGGGCCTATCA 59.011 50.000 0.84 0.00 0.00 2.15
1865 9849 2.169978 AGTACACGAAAAGGGGCCTATC 59.830 50.000 0.84 0.00 0.00 2.08
1866 9850 2.093128 CAGTACACGAAAAGGGGCCTAT 60.093 50.000 0.84 0.00 0.00 2.57
1867 9851 1.276989 CAGTACACGAAAAGGGGCCTA 59.723 52.381 0.84 0.00 0.00 3.93
1868 9852 0.036306 CAGTACACGAAAAGGGGCCT 59.964 55.000 0.84 0.00 0.00 5.19
1869 9853 1.583495 GCAGTACACGAAAAGGGGCC 61.583 60.000 0.00 0.00 0.00 5.80
2048 10032 8.195436 TGACGAAGAGAATAACCTATAACAAGG 58.805 37.037 0.00 0.00 42.82 3.61
2250 10237 3.190118 GCCATCTTGAACTTCTGTCAAGG 59.810 47.826 12.79 1.57 40.67 3.61
2308 10297 5.029650 ACAAAGTAACACATATGCACACG 57.970 39.130 1.58 0.00 0.00 4.49
2321 10310 6.033341 TGTTGCACTGAATTGACAAAGTAAC 58.967 36.000 0.00 0.00 0.00 2.50
2462 10461 5.067283 AGTTGTGACCATCAAAGTGTAAACC 59.933 40.000 0.00 0.00 0.00 3.27
2472 10472 4.443621 TGTACGAAAGTTGTGACCATCAA 58.556 39.130 0.00 0.00 46.40 2.57
2490 10490 6.966021 TGGAAGCAAATGTTTCTAACTGTAC 58.034 36.000 9.39 0.00 35.87 2.90
2591 10591 8.868522 AATGTATCAAAGATTGTCCAGAGAAA 57.131 30.769 0.00 0.00 0.00 2.52
2593 10593 8.324306 AGAAATGTATCAAAGATTGTCCAGAGA 58.676 33.333 0.00 0.00 0.00 3.10
2746 10753 4.406456 AGAACAGCATGAACATACCCAAA 58.594 39.130 0.00 0.00 39.69 3.28
3002 11144 8.682936 AAGTAAATAGGCATTCACATCCTAAG 57.317 34.615 0.00 0.00 36.20 2.18
3032 11174 6.772078 ACTCGAAAGCAACCGATAAAATAAG 58.228 36.000 0.00 0.00 34.08 1.73
3053 11195 9.683069 TCTCTGCAGAAAATGAAAAATAAACTC 57.317 29.630 18.85 0.00 0.00 3.01
3101 11243 5.501156 AGTTGGAGCAGGGTAATAGAAAAG 58.499 41.667 0.00 0.00 0.00 2.27
3137 11279 7.822161 ATTCAACTAAATATGTGGCAGCATA 57.178 32.000 10.67 10.67 36.01 3.14
3173 11315 4.997395 CCATGTCCCAGTAATGTGTATAGC 59.003 45.833 0.00 0.00 0.00 2.97
3196 11338 6.375377 TGACGGCAAAACTATGTTATTTGTC 58.625 36.000 0.00 0.00 36.63 3.18
3202 11344 5.353123 GGAAGATGACGGCAAAACTATGTTA 59.647 40.000 0.00 0.00 0.00 2.41
3203 11345 4.156008 GGAAGATGACGGCAAAACTATGTT 59.844 41.667 0.00 0.00 0.00 2.71
3216 11358 7.041780 CCTTTGGAACATATAAGGAAGATGACG 60.042 40.741 0.00 0.00 44.27 4.35
3247 11389 6.591935 ACTTTAGCAGGGATTTCGATTATGA 58.408 36.000 0.00 0.00 0.00 2.15
3350 11492 1.737793 AGCTAAACCCGAAAGCAATCG 59.262 47.619 4.36 4.36 42.37 3.34
3362 11504 9.805966 GTATTTGCACAAAATTAAAGCTAAACC 57.194 29.630 0.00 0.00 39.29 3.27
3400 11549 3.763897 GCAGGGTATTCAAAACCAGATGT 59.236 43.478 0.00 0.00 38.87 3.06
3461 11610 5.008331 ACATCGGAGTCAGAACTACTACAA 58.992 41.667 0.00 0.00 33.77 2.41
3484 11633 7.122715 AGGGTGTTCAACTAAATATATGGCAA 58.877 34.615 0.00 0.00 0.00 4.52
3487 11636 7.518188 AGGAGGGTGTTCAACTAAATATATGG 58.482 38.462 0.00 0.00 0.00 2.74
3491 11640 5.491078 TGGAGGAGGGTGTTCAACTAAATAT 59.509 40.000 0.00 0.00 0.00 1.28
3500 11649 2.983192 TGTATTTGGAGGAGGGTGTTCA 59.017 45.455 0.00 0.00 0.00 3.18
3523 11672 2.475466 GCGCATGTCCCACTGATGG 61.475 63.158 0.30 0.00 46.81 3.51
3529 11678 2.126888 CGTTTGCGCATGTCCCAC 60.127 61.111 12.75 0.42 0.00 4.61
3540 11689 1.785518 CGGCGAAACTATGTCGTTTGC 60.786 52.381 0.00 0.00 40.64 3.68
3569 11718 8.494347 CATGTTTTTCAAAATTCGGAGCATTTA 58.506 29.630 0.00 0.00 0.00 1.40
3571 11720 6.566376 GCATGTTTTTCAAAATTCGGAGCATT 60.566 34.615 0.00 0.00 0.00 3.56
3574 11723 4.448732 AGCATGTTTTTCAAAATTCGGAGC 59.551 37.500 0.00 0.00 0.00 4.70
3601 11752 0.468226 AACTGAGGCGTGACAGGAAA 59.532 50.000 0.00 0.00 38.30 3.13
3634 11785 0.601046 ATGTGCACCACTCACTCGTG 60.601 55.000 15.69 0.00 35.11 4.35
3692 11843 4.217767 TGATAGTTGAGCGTTAGTGTCAGT 59.782 41.667 0.00 0.00 0.00 3.41
3721 11872 9.512588 CCTTCAGGTTTGCAAGATTATAGATAT 57.487 33.333 0.00 0.00 0.00 1.63
3722 11873 8.713971 TCCTTCAGGTTTGCAAGATTATAGATA 58.286 33.333 0.00 0.00 36.34 1.98
3723 11874 7.577303 TCCTTCAGGTTTGCAAGATTATAGAT 58.423 34.615 0.00 0.00 36.34 1.98
3724 11875 6.957631 TCCTTCAGGTTTGCAAGATTATAGA 58.042 36.000 0.00 0.00 36.34 1.98
3729 11880 4.410099 TCATCCTTCAGGTTTGCAAGATT 58.590 39.130 0.00 0.00 36.34 2.40
3746 11897 2.365293 ACAAAGTTGGCAGGTTTCATCC 59.635 45.455 0.00 0.00 0.00 3.51
3763 11914 3.560896 GGCGTACCTGAAAGTAACACAAA 59.439 43.478 0.00 0.00 0.00 2.83
3911 12062 1.896660 GTGCCGGTTGCTCCTGAAA 60.897 57.895 1.90 0.00 42.00 2.69
3983 12134 1.079073 CCCCTGGCCCTTGTTGATT 59.921 57.895 0.00 0.00 0.00 2.57
4004 12173 0.036875 CCTTGTTCGAAAGGGCCTCT 59.963 55.000 6.46 0.00 42.68 3.69
4086 12258 4.153475 CCCGCGTTTTCTTTCTAATCAGAA 59.847 41.667 4.92 0.00 39.06 3.02
4155 12336 7.601508 TCACATAAGCTACATCATCTTAGCATG 59.398 37.037 3.61 0.00 42.78 4.06
4173 12354 2.417933 GCTGACAGCCAGTTCACATAAG 59.582 50.000 17.01 0.00 44.71 1.73
4176 12357 2.938354 GCTGACAGCCAGTTCACAT 58.062 52.632 17.01 0.00 44.71 3.21
4177 12358 4.462394 GCTGACAGCCAGTTCACA 57.538 55.556 17.01 0.00 44.71 3.58
4243 12458 0.895100 CAAGCAGCAGGTTTAGCCCA 60.895 55.000 0.00 0.00 38.26 5.36
4244 12459 0.609131 TCAAGCAGCAGGTTTAGCCC 60.609 55.000 0.00 0.00 38.26 5.19
4245 12460 1.467920 ATCAAGCAGCAGGTTTAGCC 58.532 50.000 0.00 0.00 32.07 3.93
4246 12461 2.489329 TCAATCAAGCAGCAGGTTTAGC 59.511 45.455 0.00 0.00 32.07 3.09
4292 12508 8.421249 TCCTTTTATCCATTTTGATGACAAGT 57.579 30.769 0.00 0.00 37.32 3.16
4306 12522 9.607333 ACATCTAGATACATCTCCTTTTATCCA 57.393 33.333 4.54 0.00 38.32 3.41
4355 12571 9.829507 AATACTTGTCATCAAAATGGACAAAAA 57.170 25.926 7.70 0.55 34.98 1.94
4357 12573 9.829507 AAAATACTTGTCATCAAAATGGACAAA 57.170 25.926 7.70 0.00 34.98 2.83
4358 12574 9.474920 GAAAATACTTGTCATCAAAATGGACAA 57.525 29.630 0.00 0.00 34.59 3.18
4359 12575 8.087750 GGAAAATACTTGTCATCAAAATGGACA 58.912 33.333 0.00 0.00 33.42 4.02
4360 12576 7.273381 CGGAAAATACTTGTCATCAAAATGGAC 59.727 37.037 0.00 0.00 33.42 4.02
4361 12577 7.175816 TCGGAAAATACTTGTCATCAAAATGGA 59.824 33.333 0.00 0.00 33.42 3.41
4362 12578 7.273381 GTCGGAAAATACTTGTCATCAAAATGG 59.727 37.037 0.00 0.00 33.42 3.16
4363 12579 7.007367 CGTCGGAAAATACTTGTCATCAAAATG 59.993 37.037 0.00 0.00 32.87 2.32
4364 12580 7.021196 CGTCGGAAAATACTTGTCATCAAAAT 58.979 34.615 0.00 0.00 32.87 1.82
4365 12581 6.367421 CGTCGGAAAATACTTGTCATCAAAA 58.633 36.000 0.00 0.00 32.87 2.44
4368 12584 3.930229 CCGTCGGAAAATACTTGTCATCA 59.070 43.478 4.91 0.00 0.00 3.07
4369 12585 4.178540 TCCGTCGGAAAATACTTGTCATC 58.821 43.478 12.68 0.00 0.00 2.92
4370 12586 4.181578 CTCCGTCGGAAAATACTTGTCAT 58.818 43.478 16.23 0.00 0.00 3.06
4374 12590 2.093869 TCCCTCCGTCGGAAAATACTTG 60.094 50.000 16.23 0.47 0.00 3.16
4375 12591 2.167900 CTCCCTCCGTCGGAAAATACTT 59.832 50.000 16.23 0.00 0.00 2.24
4376 12592 1.755380 CTCCCTCCGTCGGAAAATACT 59.245 52.381 16.23 0.00 0.00 2.12
4378 12594 1.856629 ACTCCCTCCGTCGGAAAATA 58.143 50.000 16.23 0.42 0.00 1.40
4380 12596 1.273327 GTTACTCCCTCCGTCGGAAAA 59.727 52.381 16.23 2.66 0.00 2.29
4381 12597 0.890683 GTTACTCCCTCCGTCGGAAA 59.109 55.000 16.23 2.35 0.00 3.13
4382 12598 0.251297 TGTTACTCCCTCCGTCGGAA 60.251 55.000 16.23 0.00 0.00 4.30
4383 12599 0.679002 CTGTTACTCCCTCCGTCGGA 60.679 60.000 14.54 14.54 0.00 4.55
4384 12600 0.679002 TCTGTTACTCCCTCCGTCGG 60.679 60.000 4.39 4.39 0.00 4.79
4385 12601 0.450983 GTCTGTTACTCCCTCCGTCG 59.549 60.000 0.00 0.00 0.00 5.12
4386 12602 0.450983 CGTCTGTTACTCCCTCCGTC 59.549 60.000 0.00 0.00 0.00 4.79
4387 12603 0.964358 CCGTCTGTTACTCCCTCCGT 60.964 60.000 0.00 0.00 0.00 4.69
4388 12604 1.664321 CCCGTCTGTTACTCCCTCCG 61.664 65.000 0.00 0.00 0.00 4.63
4389 12605 1.328430 CCCCGTCTGTTACTCCCTCC 61.328 65.000 0.00 0.00 0.00 4.30
4390 12606 1.957765 GCCCCGTCTGTTACTCCCTC 61.958 65.000 0.00 0.00 0.00 4.30
4391 12607 1.988406 GCCCCGTCTGTTACTCCCT 60.988 63.158 0.00 0.00 0.00 4.20
4392 12608 1.988406 AGCCCCGTCTGTTACTCCC 60.988 63.158 0.00 0.00 0.00 4.30
4393 12609 1.218316 CAGCCCCGTCTGTTACTCC 59.782 63.158 0.00 0.00 0.00 3.85
4394 12610 0.824759 ATCAGCCCCGTCTGTTACTC 59.175 55.000 0.00 0.00 35.63 2.59
4413 12629 1.066430 GGATTTCAGGACTACGGTGCA 60.066 52.381 0.00 0.00 36.20 4.57
4419 12635 1.404391 TCGCGAGGATTTCAGGACTAC 59.596 52.381 3.71 0.00 0.00 2.73
4435 12651 3.666153 CGACGACACAAATATCGCG 57.334 52.632 0.00 0.00 42.12 5.87
4496 12712 1.837439 ACCGCATCCTGAGTTATCCAA 59.163 47.619 0.00 0.00 0.00 3.53
4509 12725 3.499737 CGACCAGGCAACCGCATC 61.500 66.667 0.00 0.00 41.24 3.91
4525 12741 0.528466 AGAGTATCACGCATGCCACG 60.528 55.000 13.15 0.00 37.82 4.94
4535 12755 4.611807 CGCTCATCGGAACTAGAGTATCAC 60.612 50.000 0.00 0.00 33.28 3.06
4561 12874 2.969238 GAGCACGATCGGCATGGG 60.969 66.667 24.07 7.74 0.00 4.00
4562 12875 2.969238 GGAGCACGATCGGCATGG 60.969 66.667 24.07 9.24 0.00 3.66
4563 12876 2.969238 GGGAGCACGATCGGCATG 60.969 66.667 24.07 13.91 0.00 4.06
4564 12877 3.451556 CTGGGAGCACGATCGGCAT 62.452 63.158 24.07 13.04 0.00 4.40
4565 12878 4.147449 CTGGGAGCACGATCGGCA 62.147 66.667 24.07 8.20 0.00 5.69
4566 12879 4.899239 CCTGGGAGCACGATCGGC 62.899 72.222 20.98 18.95 0.00 5.54
4567 12880 4.899239 GCCTGGGAGCACGATCGG 62.899 72.222 20.98 9.59 0.00 4.18
4581 12894 3.241530 TGAGGTTGTGAGCCGCCT 61.242 61.111 0.00 0.00 0.00 5.52
4587 12900 2.733552 CGAACATCTGTGAGGTTGTGAG 59.266 50.000 2.32 0.00 36.68 3.51
4597 12910 1.340658 CCGTGACTCGAACATCTGTG 58.659 55.000 0.00 0.00 42.86 3.66
4655 12968 0.030638 CAACGGGTTGTGGCAAAGAG 59.969 55.000 3.41 0.00 35.92 2.85
4656 12969 1.388065 CCAACGGGTTGTGGCAAAGA 61.388 55.000 10.37 0.00 38.85 2.52
4659 12972 2.835431 CCCAACGGGTTGTGGCAA 60.835 61.111 10.37 0.00 38.25 4.52
4860 13202 1.524165 TGGGGTGTTTTGTCGTCGG 60.524 57.895 0.00 0.00 0.00 4.79
4919 13269 2.058595 CGAGGTGGGTAGTGGGGAG 61.059 68.421 0.00 0.00 0.00 4.30
4944 13294 2.821366 GGCAGTGTGAGATGGGCG 60.821 66.667 0.00 0.00 0.00 6.13
4949 13299 2.046892 GGCGTGGCAGTGTGAGAT 60.047 61.111 0.00 0.00 0.00 2.75
4950 13300 4.314440 GGGCGTGGCAGTGTGAGA 62.314 66.667 0.00 0.00 0.00 3.27
4959 13316 3.999297 TATTTTCCCGGGGCGTGGC 62.999 63.158 23.50 0.00 0.00 5.01
4963 13331 0.251165 ATGGATATTTTCCCGGGGCG 60.251 55.000 23.50 0.00 44.77 6.13
4964 13332 1.545841 GATGGATATTTTCCCGGGGC 58.454 55.000 23.50 1.29 44.77 5.80
4972 13340 2.040412 GCGGAGAGGGGATGGATATTTT 59.960 50.000 0.00 0.00 0.00 1.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.