Multiple sequence alignment - TraesCS2D01G542600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G542600 chr2D 100.000 4477 0 0 1 4477 621067597 621063121 0.000000e+00 8268
1 TraesCS2D01G542600 chr2D 93.571 140 6 3 261 399 507464223 507464086 5.870000e-49 206
2 TraesCS2D01G542600 chr2D 75.618 283 43 11 4180 4451 620922868 620922601 2.830000e-22 117
3 TraesCS2D01G542600 chr2A 91.966 2614 152 35 565 3151 752871550 752868968 0.000000e+00 3611
4 TraesCS2D01G542600 chr2A 91.067 1321 81 13 3183 4477 752868120 752866811 0.000000e+00 1751
5 TraesCS2D01G542600 chr2A 86.047 516 49 8 3977 4477 752864457 752863950 2.370000e-147 532
6 TraesCS2D01G542600 chr2A 85.853 516 49 8 3977 4477 752865887 752865381 1.100000e-145 527
7 TraesCS2D01G542600 chr2A 92.857 140 10 0 260 399 240789783 240789644 2.110000e-48 204
8 TraesCS2D01G542600 chr2A 94.615 130 6 1 396 525 752871803 752871675 2.730000e-47 200
9 TraesCS2D01G542600 chr2B 91.908 1347 70 13 3151 4477 761981773 761980446 0.000000e+00 1847
10 TraesCS2D01G542600 chr2B 94.902 1177 48 7 1978 3151 761990719 761989552 0.000000e+00 1831
11 TraesCS2D01G542600 chr2B 94.461 993 47 6 2159 3146 761982857 761981868 0.000000e+00 1522
12 TraesCS2D01G542600 chr2B 85.980 1291 104 55 739 1979 761992036 761990773 0.000000e+00 1310
13 TraesCS2D01G542600 chr2B 84.107 862 72 32 3151 3987 761989462 761988641 0.000000e+00 773
14 TraesCS2D01G542600 chr2B 83.225 614 49 26 1514 2102 761983440 761982856 8.590000e-142 514
15 TraesCS2D01G542600 chr2B 92.414 145 7 4 257 399 185875589 185875447 2.110000e-48 204
16 TraesCS2D01G542600 chr2B 88.525 122 14 0 3319 3440 761983577 761983456 1.000000e-31 148
17 TraesCS2D01G542600 chr2B 90.323 93 9 0 821 913 46099085 46098993 6.080000e-24 122
18 TraesCS2D01G542600 chr4A 85.714 672 68 19 1823 2477 743678554 743677894 0.000000e+00 684
19 TraesCS2D01G542600 chr4A 95.455 132 6 0 272 403 200095981 200095850 1.260000e-50 211
20 TraesCS2D01G542600 chr5B 81.514 449 58 18 3254 3686 22070484 22070923 3.320000e-91 346
21 TraesCS2D01G542600 chr5A 82.609 391 50 10 3232 3617 6500562 6500939 3.340000e-86 329
22 TraesCS2D01G542600 chr6A 96.850 127 4 0 273 399 457399481 457399355 3.510000e-51 213
23 TraesCS2D01G542600 chr1A 94.815 135 7 0 265 399 407648563 407648697 1.260000e-50 211
24 TraesCS2D01G542600 chr1A 95.385 130 5 1 270 399 562906914 562906786 5.870000e-49 206
25 TraesCS2D01G542600 chrUn 95.420 131 6 0 269 399 108296322 108296192 4.540000e-50 209
26 TraesCS2D01G542600 chr1B 95.420 131 6 0 269 399 646782587 646782457 4.540000e-50 209


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G542600 chr2D 621063121 621067597 4476 True 8268.000000 8268 100.000000 1 4477 1 chr2D.!!$R3 4476
1 TraesCS2D01G542600 chr2A 752863950 752871803 7853 True 1324.200000 3611 89.909600 396 4477 5 chr2A.!!$R2 4081
2 TraesCS2D01G542600 chr2B 761988641 761992036 3395 True 1304.666667 1831 88.329667 739 3987 3 chr2B.!!$R4 3248
3 TraesCS2D01G542600 chr2B 761980446 761983577 3131 True 1007.750000 1847 89.529750 1514 4477 4 chr2B.!!$R3 2963
4 TraesCS2D01G542600 chr4A 743677894 743678554 660 True 684.000000 684 85.714000 1823 2477 1 chr4A.!!$R2 654

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
674 772 0.030638 CTCTTTGCCACAACCCGTTG 59.969 55.0 6.03 6.03 45.58 4.10 F
1450 1632 0.172803 ACGTATTCCTCACGGTGAGC 59.827 55.0 28.50 15.55 42.98 4.26 F
3329 4507 0.615331 CTGCTCACTGCTCCCCTTAA 59.385 55.0 0.00 0.00 43.37 1.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2317 2667 2.041620 TGCCTTACCTCCATTGAGCTTT 59.958 45.455 0.0 0.0 37.29 3.51 R
3416 4594 1.003233 GGAGAACGGAGGGTTTCATGT 59.997 52.381 0.0 0.0 39.50 3.21 R
4288 5512 1.689273 GCCTCTCCGTCAGTTCCATAT 59.311 52.381 0.0 0.0 0.00 1.78 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 0.889186 GCAGAGGCCCTTTCGAACAA 60.889 55.000 0.00 0.00 0.00 2.83
22 23 1.160137 CAGAGGCCCTTTCGAACAAG 58.840 55.000 0.00 0.00 0.00 3.16
23 24 0.036875 AGAGGCCCTTTCGAACAAGG 59.963 55.000 8.67 8.67 42.91 3.61
24 25 1.587043 GAGGCCCTTTCGAACAAGGC 61.587 60.000 19.29 19.29 42.04 4.35
25 26 2.561373 GCCCTTTCGAACAAGGCG 59.439 61.111 14.49 7.85 42.04 5.52
26 27 2.978018 GCCCTTTCGAACAAGGCGG 61.978 63.158 14.49 3.00 42.04 6.13
27 28 2.561373 CCTTTCGAACAAGGCGGC 59.439 61.111 0.00 0.00 37.12 6.53
28 29 2.561373 CTTTCGAACAAGGCGGCC 59.439 61.111 12.11 12.11 0.00 6.13
29 30 1.966451 CTTTCGAACAAGGCGGCCT 60.966 57.895 17.69 17.69 33.87 5.19
30 31 1.912371 CTTTCGAACAAGGCGGCCTC 61.912 60.000 24.08 9.08 30.89 4.70
31 32 2.391724 TTTCGAACAAGGCGGCCTCT 62.392 55.000 24.08 10.09 30.89 3.69
32 33 3.121030 CGAACAAGGCGGCCTCTG 61.121 66.667 24.08 22.58 30.89 3.35
33 34 3.435186 GAACAAGGCGGCCTCTGC 61.435 66.667 24.08 5.37 30.89 4.26
41 42 3.777925 CGGCCTCTGCGAACGTTG 61.778 66.667 5.00 0.00 38.85 4.10
43 44 4.090057 GCCTCTGCGAACGTTGGC 62.090 66.667 26.03 26.03 0.00 4.52
44 45 2.664851 CCTCTGCGAACGTTGGCA 60.665 61.111 31.54 31.54 39.63 4.92
52 53 4.626081 AACGTTGGCAGCGGCTCT 62.626 61.111 26.86 3.60 40.87 4.09
55 56 3.123620 GTTGGCAGCGGCTCTCAG 61.124 66.667 9.17 0.00 40.87 3.35
89 90 3.097461 GCAGGCTGCAGATGATTCT 57.903 52.632 33.33 1.13 44.26 2.40
107 108 6.534059 TGATTCTGATTAGAAAGAAAACGCG 58.466 36.000 3.53 3.53 45.47 6.01
108 109 4.921470 TCTGATTAGAAAGAAAACGCGG 57.079 40.909 12.47 0.00 0.00 6.46
109 110 3.682858 TCTGATTAGAAAGAAAACGCGGG 59.317 43.478 12.47 0.00 0.00 6.13
110 111 2.745281 TGATTAGAAAGAAAACGCGGGG 59.255 45.455 12.47 0.00 0.00 5.73
111 112 2.259266 TTAGAAAGAAAACGCGGGGT 57.741 45.000 12.47 0.00 0.00 4.95
112 113 2.259266 TAGAAAGAAAACGCGGGGTT 57.741 45.000 12.47 4.42 41.76 4.11
120 121 0.752376 AAACGCGGGGTTTTGAAGGA 60.752 50.000 16.35 0.00 46.52 3.36
122 123 0.752376 ACGCGGGGTTTTGAAGGAAA 60.752 50.000 12.47 0.00 0.00 3.13
123 124 0.318360 CGCGGGGTTTTGAAGGAAAC 60.318 55.000 0.00 0.00 38.49 2.78
124 125 0.747852 GCGGGGTTTTGAAGGAAACA 59.252 50.000 3.32 0.00 40.44 2.83
125 126 1.137282 GCGGGGTTTTGAAGGAAACAA 59.863 47.619 3.32 0.00 40.44 2.83
126 127 2.224185 GCGGGGTTTTGAAGGAAACAAT 60.224 45.455 3.32 0.00 40.44 2.71
127 128 3.649073 CGGGGTTTTGAAGGAAACAATC 58.351 45.455 3.32 0.00 40.44 2.67
128 129 3.068873 CGGGGTTTTGAAGGAAACAATCA 59.931 43.478 3.32 0.00 40.44 2.57
129 130 4.262420 CGGGGTTTTGAAGGAAACAATCAT 60.262 41.667 3.32 0.00 40.44 2.45
131 132 5.221621 GGGGTTTTGAAGGAAACAATCATGA 60.222 40.000 0.00 0.00 40.44 3.07
132 133 6.466812 GGGTTTTGAAGGAAACAATCATGAT 58.533 36.000 1.18 1.18 40.44 2.45
134 135 6.930722 GGTTTTGAAGGAAACAATCATGATGT 59.069 34.615 9.46 6.95 40.44 3.06
137 138 4.082081 TGAAGGAAACAATCATGATGTGCC 60.082 41.667 9.46 13.38 0.00 5.01
138 139 3.705051 AGGAAACAATCATGATGTGCCT 58.295 40.909 9.46 15.05 33.83 4.75
139 140 3.446161 AGGAAACAATCATGATGTGCCTG 59.554 43.478 9.46 5.87 35.97 4.85
140 141 3.444742 GGAAACAATCATGATGTGCCTGA 59.555 43.478 9.46 0.00 0.00 3.86
141 142 4.439700 GGAAACAATCATGATGTGCCTGAG 60.440 45.833 9.46 0.00 0.00 3.35
142 143 3.639672 ACAATCATGATGTGCCTGAGA 57.360 42.857 9.46 0.00 0.00 3.27
143 144 3.959293 ACAATCATGATGTGCCTGAGAA 58.041 40.909 9.46 0.00 0.00 2.87
144 145 4.533815 ACAATCATGATGTGCCTGAGAAT 58.466 39.130 9.46 0.00 0.00 2.40
145 146 5.687780 ACAATCATGATGTGCCTGAGAATA 58.312 37.500 9.46 0.00 0.00 1.75
146 147 5.763698 ACAATCATGATGTGCCTGAGAATAG 59.236 40.000 9.46 0.00 0.00 1.73
147 148 5.820404 ATCATGATGTGCCTGAGAATAGA 57.180 39.130 7.59 0.00 0.00 1.98
148 149 5.211174 TCATGATGTGCCTGAGAATAGAG 57.789 43.478 0.00 0.00 0.00 2.43
149 150 4.040095 TCATGATGTGCCTGAGAATAGAGG 59.960 45.833 0.00 0.00 0.00 3.69
150 151 2.702478 TGATGTGCCTGAGAATAGAGGG 59.298 50.000 0.00 0.00 0.00 4.30
151 152 0.833287 TGTGCCTGAGAATAGAGGGC 59.167 55.000 0.00 0.00 42.73 5.19
154 155 2.717639 GCCTGAGAATAGAGGGCAAA 57.282 50.000 0.00 0.00 42.08 3.68
155 156 2.293170 GCCTGAGAATAGAGGGCAAAC 58.707 52.381 0.00 0.00 42.08 2.93
156 157 2.356125 GCCTGAGAATAGAGGGCAAACA 60.356 50.000 0.00 0.00 42.08 2.83
157 158 3.686691 GCCTGAGAATAGAGGGCAAACAT 60.687 47.826 0.00 0.00 42.08 2.71
158 159 3.881688 CCTGAGAATAGAGGGCAAACATG 59.118 47.826 0.00 0.00 0.00 3.21
159 160 3.282021 TGAGAATAGAGGGCAAACATGC 58.718 45.455 0.00 0.00 0.00 4.06
160 161 3.054139 TGAGAATAGAGGGCAAACATGCT 60.054 43.478 0.00 0.00 34.73 3.79
161 162 4.164030 TGAGAATAGAGGGCAAACATGCTA 59.836 41.667 0.00 0.00 34.73 3.49
162 163 5.116084 AGAATAGAGGGCAAACATGCTAA 57.884 39.130 0.00 0.00 34.73 3.09
163 164 5.128919 AGAATAGAGGGCAAACATGCTAAG 58.871 41.667 0.00 0.00 34.73 2.18
164 165 4.778213 ATAGAGGGCAAACATGCTAAGA 57.222 40.909 0.00 0.00 34.73 2.10
165 166 3.659183 AGAGGGCAAACATGCTAAGAT 57.341 42.857 0.00 0.00 34.73 2.40
166 167 3.285484 AGAGGGCAAACATGCTAAGATG 58.715 45.455 0.00 0.00 34.73 2.90
167 168 3.054139 AGAGGGCAAACATGCTAAGATGA 60.054 43.478 0.00 0.00 34.73 2.92
168 169 3.887716 GAGGGCAAACATGCTAAGATGAT 59.112 43.478 0.00 0.00 34.73 2.45
169 170 3.635373 AGGGCAAACATGCTAAGATGATG 59.365 43.478 0.00 0.00 34.73 3.07
170 171 3.382546 GGGCAAACATGCTAAGATGATGT 59.617 43.478 0.00 0.00 34.73 3.06
171 172 4.580167 GGGCAAACATGCTAAGATGATGTA 59.420 41.667 0.00 0.00 34.73 2.29
172 173 5.278169 GGGCAAACATGCTAAGATGATGTAG 60.278 44.000 0.00 0.00 34.73 2.74
173 174 5.210715 GCAAACATGCTAAGATGATGTAGC 58.789 41.667 0.00 0.00 42.56 3.58
174 175 5.008415 GCAAACATGCTAAGATGATGTAGCT 59.992 40.000 0.00 0.00 42.67 3.32
175 176 6.459298 GCAAACATGCTAAGATGATGTAGCTT 60.459 38.462 0.00 0.00 42.67 3.74
176 177 7.254898 GCAAACATGCTAAGATGATGTAGCTTA 60.255 37.037 0.00 0.00 42.67 3.09
177 178 8.781196 CAAACATGCTAAGATGATGTAGCTTAT 58.219 33.333 0.00 0.00 42.67 1.73
178 179 7.902387 ACATGCTAAGATGATGTAGCTTATG 57.098 36.000 0.00 3.65 42.67 1.90
179 180 7.448420 ACATGCTAAGATGATGTAGCTTATGT 58.552 34.615 0.00 4.18 42.67 2.29
180 181 7.387122 ACATGCTAAGATGATGTAGCTTATGTG 59.613 37.037 0.00 0.00 42.67 3.21
181 182 7.054491 TGCTAAGATGATGTAGCTTATGTGA 57.946 36.000 0.00 0.00 42.67 3.58
182 183 7.500141 TGCTAAGATGATGTAGCTTATGTGAA 58.500 34.615 0.00 0.00 42.67 3.18
183 184 7.439356 TGCTAAGATGATGTAGCTTATGTGAAC 59.561 37.037 0.00 0.00 42.67 3.18
184 185 7.655328 GCTAAGATGATGTAGCTTATGTGAACT 59.345 37.037 0.00 0.00 36.73 3.01
185 186 7.783090 AAGATGATGTAGCTTATGTGAACTG 57.217 36.000 0.00 0.00 32.18 3.16
186 187 6.286758 AGATGATGTAGCTTATGTGAACTGG 58.713 40.000 0.00 0.00 0.00 4.00
187 188 4.191544 TGATGTAGCTTATGTGAACTGGC 58.808 43.478 0.00 0.00 0.00 4.85
188 189 3.981071 TGTAGCTTATGTGAACTGGCT 57.019 42.857 0.00 0.00 0.00 4.75
189 190 3.599343 TGTAGCTTATGTGAACTGGCTG 58.401 45.455 0.00 0.00 0.00 4.85
190 191 2.867109 AGCTTATGTGAACTGGCTGT 57.133 45.000 0.00 0.00 0.00 4.40
191 192 2.704572 AGCTTATGTGAACTGGCTGTC 58.295 47.619 0.00 0.00 0.00 3.51
192 193 2.038952 AGCTTATGTGAACTGGCTGTCA 59.961 45.455 0.00 0.00 0.00 3.58
223 224 2.184322 CGGTCTGATCCGGTGGTG 59.816 66.667 0.00 0.00 45.88 4.17
224 225 2.584608 GGTCTGATCCGGTGGTGG 59.415 66.667 0.00 0.00 0.00 4.61
225 226 1.987855 GGTCTGATCCGGTGGTGGA 60.988 63.158 0.00 0.00 43.58 4.02
234 235 3.443145 TCCGGTGGTGGATAATTTTGT 57.557 42.857 0.00 0.00 31.53 2.83
235 236 4.571369 TCCGGTGGTGGATAATTTTGTA 57.429 40.909 0.00 0.00 31.53 2.41
236 237 4.519213 TCCGGTGGTGGATAATTTTGTAG 58.481 43.478 0.00 0.00 31.53 2.74
237 238 3.066203 CCGGTGGTGGATAATTTTGTAGC 59.934 47.826 0.00 0.00 0.00 3.58
238 239 3.242608 CGGTGGTGGATAATTTTGTAGCG 60.243 47.826 0.00 0.00 0.00 4.26
239 240 3.488553 GGTGGTGGATAATTTTGTAGCGC 60.489 47.826 0.00 0.00 0.00 5.92
240 241 3.377172 GTGGTGGATAATTTTGTAGCGCT 59.623 43.478 17.26 17.26 0.00 5.92
241 242 4.573201 GTGGTGGATAATTTTGTAGCGCTA 59.427 41.667 14.45 14.45 0.00 4.26
242 243 4.814234 TGGTGGATAATTTTGTAGCGCTAG 59.186 41.667 19.48 0.00 0.00 3.42
243 244 4.814771 GGTGGATAATTTTGTAGCGCTAGT 59.185 41.667 19.48 0.00 0.00 2.57
244 245 5.277345 GGTGGATAATTTTGTAGCGCTAGTG 60.277 44.000 19.48 0.00 0.00 2.74
245 246 4.814234 TGGATAATTTTGTAGCGCTAGTGG 59.186 41.667 19.48 0.00 0.00 4.00
246 247 4.213482 GGATAATTTTGTAGCGCTAGTGGG 59.787 45.833 19.48 0.00 0.00 4.61
253 254 3.809423 GCGCTAGTGGGCTAAACC 58.191 61.111 0.00 0.00 46.81 3.27
254 255 1.221021 GCGCTAGTGGGCTAAACCT 59.779 57.895 0.00 0.00 46.81 3.50
255 256 1.090052 GCGCTAGTGGGCTAAACCTG 61.090 60.000 0.00 0.00 46.81 4.00
256 257 1.090052 CGCTAGTGGGCTAAACCTGC 61.090 60.000 0.00 0.00 39.10 4.85
257 258 0.253327 GCTAGTGGGCTAAACCTGCT 59.747 55.000 0.00 0.00 39.10 4.24
258 259 2.014068 GCTAGTGGGCTAAACCTGCTG 61.014 57.143 0.00 0.00 39.10 4.41
259 260 0.035439 TAGTGGGCTAAACCTGCTGC 60.035 55.000 0.00 0.00 39.10 5.25
260 261 1.303643 GTGGGCTAAACCTGCTGCT 60.304 57.895 0.00 0.00 39.10 4.24
261 262 0.895559 GTGGGCTAAACCTGCTGCTT 60.896 55.000 0.00 0.00 39.10 3.91
262 263 0.895100 TGGGCTAAACCTGCTGCTTG 60.895 55.000 0.00 0.00 39.10 4.01
263 264 0.609131 GGGCTAAACCTGCTGCTTGA 60.609 55.000 0.00 0.00 39.10 3.02
264 265 1.467920 GGCTAAACCTGCTGCTTGAT 58.532 50.000 0.00 0.00 34.51 2.57
265 266 1.821136 GGCTAAACCTGCTGCTTGATT 59.179 47.619 0.00 0.00 34.51 2.57
266 267 2.416431 GGCTAAACCTGCTGCTTGATTG 60.416 50.000 0.00 0.00 34.51 2.67
267 268 2.489329 GCTAAACCTGCTGCTTGATTGA 59.511 45.455 0.00 0.00 0.00 2.57
268 269 3.129988 GCTAAACCTGCTGCTTGATTGAT 59.870 43.478 0.00 0.00 0.00 2.57
269 270 4.336433 GCTAAACCTGCTGCTTGATTGATA 59.664 41.667 0.00 0.00 0.00 2.15
270 271 5.163622 GCTAAACCTGCTGCTTGATTGATAA 60.164 40.000 0.00 0.00 0.00 1.75
271 272 4.978083 AACCTGCTGCTTGATTGATAAG 57.022 40.909 0.00 0.00 0.00 1.73
272 273 3.960571 ACCTGCTGCTTGATTGATAAGT 58.039 40.909 0.00 0.00 0.00 2.24
273 274 5.102953 ACCTGCTGCTTGATTGATAAGTA 57.897 39.130 0.00 0.00 0.00 2.24
274 275 4.878397 ACCTGCTGCTTGATTGATAAGTAC 59.122 41.667 0.00 0.00 0.00 2.73
275 276 5.121811 CCTGCTGCTTGATTGATAAGTACT 58.878 41.667 0.00 0.00 0.00 2.73
276 277 5.587844 CCTGCTGCTTGATTGATAAGTACTT 59.412 40.000 13.68 13.68 0.00 2.24
277 278 6.238320 CCTGCTGCTTGATTGATAAGTACTTC 60.238 42.308 12.39 0.00 0.00 3.01
278 279 5.586243 TGCTGCTTGATTGATAAGTACTTCC 59.414 40.000 12.39 6.20 0.00 3.46
279 280 5.819901 GCTGCTTGATTGATAAGTACTTCCT 59.180 40.000 12.39 0.34 0.00 3.36
280 281 6.018343 GCTGCTTGATTGATAAGTACTTCCTC 60.018 42.308 12.39 10.87 0.00 3.71
281 282 6.349300 TGCTTGATTGATAAGTACTTCCTCC 58.651 40.000 12.39 0.75 0.00 4.30
282 283 5.463724 GCTTGATTGATAAGTACTTCCTCCG 59.536 44.000 12.39 0.00 0.00 4.63
283 284 6.540438 TTGATTGATAAGTACTTCCTCCGT 57.460 37.500 12.39 2.32 0.00 4.69
284 285 6.145338 TGATTGATAAGTACTTCCTCCGTC 57.855 41.667 12.39 10.81 0.00 4.79
285 286 4.996788 TTGATAAGTACTTCCTCCGTCC 57.003 45.455 12.39 0.00 0.00 4.79
286 287 2.947652 TGATAAGTACTTCCTCCGTCCG 59.052 50.000 12.39 0.00 0.00 4.79
287 288 1.755179 TAAGTACTTCCTCCGTCCGG 58.245 55.000 12.39 0.00 0.00 5.14
288 289 0.038744 AAGTACTTCCTCCGTCCGGA 59.961 55.000 0.00 0.00 42.90 5.14
289 290 0.038744 AGTACTTCCTCCGTCCGGAA 59.961 55.000 5.23 0.00 44.66 4.30
290 291 0.890683 GTACTTCCTCCGTCCGGAAA 59.109 55.000 5.23 1.47 44.66 3.13
291 292 1.479730 GTACTTCCTCCGTCCGGAAAT 59.520 52.381 5.23 0.00 44.66 2.17
292 293 1.856629 ACTTCCTCCGTCCGGAAATA 58.143 50.000 5.23 0.00 44.66 1.40
293 294 1.479730 ACTTCCTCCGTCCGGAAATAC 59.520 52.381 5.23 0.00 44.66 1.89
294 295 1.755380 CTTCCTCCGTCCGGAAATACT 59.245 52.381 5.23 0.00 44.66 2.12
295 296 1.856629 TCCTCCGTCCGGAAATACTT 58.143 50.000 5.23 0.00 44.66 2.24
296 297 1.479323 TCCTCCGTCCGGAAATACTTG 59.521 52.381 5.23 0.00 44.66 3.16
297 298 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
298 299 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
299 300 1.894466 TCCGTCCGGAAATACTTGTCA 59.106 47.619 5.23 0.00 42.05 3.58
300 301 2.498481 TCCGTCCGGAAATACTTGTCAT 59.502 45.455 5.23 0.00 42.05 3.06
301 302 2.864343 CCGTCCGGAAATACTTGTCATC 59.136 50.000 5.23 0.00 37.50 2.92
302 303 3.517602 CGTCCGGAAATACTTGTCATCA 58.482 45.455 5.23 0.00 0.00 3.07
303 304 3.930229 CGTCCGGAAATACTTGTCATCAA 59.070 43.478 5.23 0.00 0.00 2.57
304 305 4.390603 CGTCCGGAAATACTTGTCATCAAA 59.609 41.667 5.23 0.00 32.87 2.69
305 306 5.106869 CGTCCGGAAATACTTGTCATCAAAA 60.107 40.000 5.23 0.00 32.87 2.44
306 307 6.403200 CGTCCGGAAATACTTGTCATCAAAAT 60.403 38.462 5.23 0.00 32.87 1.82
307 308 6.747280 GTCCGGAAATACTTGTCATCAAAATG 59.253 38.462 5.23 0.00 32.87 2.32
308 309 6.035843 CCGGAAATACTTGTCATCAAAATGG 58.964 40.000 0.00 0.00 33.42 3.16
309 310 6.127758 CCGGAAATACTTGTCATCAAAATGGA 60.128 38.462 0.00 0.00 33.42 3.41
310 311 7.416664 CCGGAAATACTTGTCATCAAAATGGAT 60.417 37.037 0.00 0.00 33.42 3.41
311 312 8.620416 CGGAAATACTTGTCATCAAAATGGATA 58.380 33.333 0.00 0.00 33.42 2.59
317 318 8.421249 ACTTGTCATCAAAATGGATAAAAGGA 57.579 30.769 0.00 0.00 33.42 3.36
318 319 8.526147 ACTTGTCATCAAAATGGATAAAAGGAG 58.474 33.333 0.00 0.00 33.42 3.69
319 320 8.648698 TTGTCATCAAAATGGATAAAAGGAGA 57.351 30.769 0.00 0.00 33.42 3.71
320 321 8.827832 TGTCATCAAAATGGATAAAAGGAGAT 57.172 30.769 0.00 0.00 33.42 2.75
321 322 8.689061 TGTCATCAAAATGGATAAAAGGAGATG 58.311 33.333 0.00 0.00 33.42 2.90
322 323 8.689972 GTCATCAAAATGGATAAAAGGAGATGT 58.310 33.333 0.00 0.00 33.42 3.06
323 324 9.919416 TCATCAAAATGGATAAAAGGAGATGTA 57.081 29.630 0.00 0.00 33.42 2.29
332 333 9.607333 TGGATAAAAGGAGATGTATCTAGATGT 57.393 33.333 15.79 1.25 37.25 3.06
381 382 9.829507 TTTTTGTCCATTTTGATGACAAGTATT 57.170 25.926 0.00 0.00 37.13 1.89
382 383 9.829507 TTTTGTCCATTTTGATGACAAGTATTT 57.170 25.926 0.00 0.00 37.13 1.40
383 384 9.829507 TTTGTCCATTTTGATGACAAGTATTTT 57.170 25.926 0.00 0.00 37.13 1.82
384 385 9.474920 TTGTCCATTTTGATGACAAGTATTTTC 57.525 29.630 0.00 0.00 37.32 2.29
385 386 8.087750 TGTCCATTTTGATGACAAGTATTTTCC 58.912 33.333 0.00 0.00 37.32 3.13
386 387 7.273381 GTCCATTTTGATGACAAGTATTTTCCG 59.727 37.037 0.00 0.00 37.32 4.30
387 388 7.175816 TCCATTTTGATGACAAGTATTTTCCGA 59.824 33.333 0.00 0.00 37.32 4.55
388 389 7.273381 CCATTTTGATGACAAGTATTTTCCGAC 59.727 37.037 0.00 0.00 37.32 4.79
389 390 5.524511 TTGATGACAAGTATTTTCCGACG 57.475 39.130 0.00 0.00 0.00 5.12
390 391 3.930229 TGATGACAAGTATTTTCCGACGG 59.070 43.478 7.84 7.84 0.00 4.79
391 392 3.663995 TGACAAGTATTTTCCGACGGA 57.336 42.857 13.88 13.88 0.00 4.69
392 393 3.581755 TGACAAGTATTTTCCGACGGAG 58.418 45.455 17.51 5.32 31.21 4.63
393 394 2.928116 GACAAGTATTTTCCGACGGAGG 59.072 50.000 17.51 3.47 31.21 4.30
394 395 2.277084 CAAGTATTTTCCGACGGAGGG 58.723 52.381 17.51 0.00 31.21 4.30
413 414 0.824759 GAGTAACAGACGGGGCTGAT 59.175 55.000 8.86 0.00 39.20 2.90
435 436 2.738964 GCACCGTAGTCCTGAAATCCTC 60.739 54.545 0.00 0.00 0.00 3.71
464 465 0.384230 GTGTCGTCGCCATGTGTTTG 60.384 55.000 0.00 0.00 0.00 2.93
496 497 1.396996 GCTCGTCGCCATATTTGTGTT 59.603 47.619 0.00 0.00 0.00 3.32
509 510 7.483307 CCATATTTGTGTTTGGATAACTCAGG 58.517 38.462 0.00 0.00 0.00 3.86
525 526 3.134127 GGATGCGGTTGCCTGGTC 61.134 66.667 0.00 0.00 41.78 4.02
539 544 2.819595 GGTCGTGGCATGCGTGAT 60.820 61.111 12.44 0.00 0.00 3.06
540 545 1.520564 GGTCGTGGCATGCGTGATA 60.521 57.895 12.44 0.00 0.00 2.15
541 546 1.636340 GTCGTGGCATGCGTGATAC 59.364 57.895 12.44 6.51 0.00 2.24
542 547 0.806102 GTCGTGGCATGCGTGATACT 60.806 55.000 12.44 0.00 0.00 2.12
555 653 3.250280 GCGTGATACTCTAGTTCCGATGA 59.750 47.826 0.00 0.00 0.00 2.92
556 654 4.611807 GCGTGATACTCTAGTTCCGATGAG 60.612 50.000 0.00 0.00 0.00 2.90
557 655 4.611807 CGTGATACTCTAGTTCCGATGAGC 60.612 50.000 0.00 0.00 0.00 4.26
558 656 3.498777 TGATACTCTAGTTCCGATGAGCG 59.501 47.826 0.00 0.00 40.47 5.03
578 676 2.969238 CCCATGCCGATCGTGCTC 60.969 66.667 22.99 8.12 0.00 4.26
581 679 3.469970 ATGCCGATCGTGCTCCCA 61.470 61.111 22.99 8.75 0.00 4.37
593 691 4.020617 CTCCCAGGCGGCTCACAA 62.021 66.667 9.32 0.00 0.00 3.33
596 694 4.335647 CCAGGCGGCTCACAACCT 62.336 66.667 9.32 0.00 0.00 3.50
597 695 2.743928 CAGGCGGCTCACAACCTC 60.744 66.667 9.32 0.00 0.00 3.85
607 705 2.481952 GCTCACAACCTCACAGATGTTC 59.518 50.000 0.00 0.00 0.00 3.18
618 716 1.078759 CAGATGTTCGAGTCACGGCC 61.079 60.000 0.00 0.00 42.82 6.13
656 754 4.363990 CGTGCGCCACCTCTCACT 62.364 66.667 4.18 0.00 0.00 3.41
659 757 2.210013 TGCGCCACCTCTCACTCTT 61.210 57.895 4.18 0.00 0.00 2.85
664 762 0.397941 CCACCTCTCACTCTTTGCCA 59.602 55.000 0.00 0.00 0.00 4.92
674 772 0.030638 CTCTTTGCCACAACCCGTTG 59.969 55.000 6.03 6.03 45.58 4.10
734 841 0.179137 CACTAGCGATCAACCAGCGA 60.179 55.000 0.00 0.00 35.78 4.93
907 1034 2.807895 CCCGCGCGAATATACCCG 60.808 66.667 34.63 10.97 0.00 5.28
933 1068 1.538135 ACCACTCCCCACTACCCAC 60.538 63.158 0.00 0.00 0.00 4.61
958 1100 4.457496 CCGCGCCCATCTCACACT 62.457 66.667 0.00 0.00 0.00 3.55
959 1101 3.190849 CGCGCCCATCTCACACTG 61.191 66.667 0.00 0.00 0.00 3.66
963 1116 2.042831 GCCCATCTCACACTGCCAC 61.043 63.158 0.00 0.00 0.00 5.01
964 1117 1.742880 CCCATCTCACACTGCCACG 60.743 63.158 0.00 0.00 0.00 4.94
992 1145 3.944087 GAAAATATCCATCCCCTCTCCG 58.056 50.000 0.00 0.00 0.00 4.63
1095 1251 3.684628 TTCCTCCCGCTCCCTCCT 61.685 66.667 0.00 0.00 0.00 3.69
1098 1254 4.824515 CTCCCGCTCCCTCCTCGT 62.825 72.222 0.00 0.00 0.00 4.18
1115 1271 4.838152 TGCTCGCCGCCTCAATCC 62.838 66.667 0.00 0.00 38.05 3.01
1159 1321 2.516460 CTCGACTCGATCCCCCGT 60.516 66.667 0.62 0.00 34.61 5.28
1160 1322 2.515523 TCGACTCGATCCCCCGTC 60.516 66.667 0.00 0.00 0.00 4.79
1161 1323 2.827190 CGACTCGATCCCCCGTCA 60.827 66.667 0.00 0.00 0.00 4.35
1162 1324 2.194212 CGACTCGATCCCCCGTCAT 61.194 63.158 0.00 0.00 0.00 3.06
1163 1325 1.660917 GACTCGATCCCCCGTCATC 59.339 63.158 0.00 0.00 0.00 2.92
1164 1326 0.824182 GACTCGATCCCCCGTCATCT 60.824 60.000 0.00 0.00 0.00 2.90
1165 1327 0.824182 ACTCGATCCCCCGTCATCTC 60.824 60.000 0.00 0.00 0.00 2.75
1166 1328 1.528292 CTCGATCCCCCGTCATCTCC 61.528 65.000 0.00 0.00 0.00 3.71
1167 1329 1.531840 CGATCCCCCGTCATCTCCT 60.532 63.158 0.00 0.00 0.00 3.69
1168 1330 1.115930 CGATCCCCCGTCATCTCCTT 61.116 60.000 0.00 0.00 0.00 3.36
1169 1331 0.682292 GATCCCCCGTCATCTCCTTC 59.318 60.000 0.00 0.00 0.00 3.46
1170 1332 0.764752 ATCCCCCGTCATCTCCTTCC 60.765 60.000 0.00 0.00 0.00 3.46
1171 1333 1.383248 CCCCCGTCATCTCCTTCCT 60.383 63.158 0.00 0.00 0.00 3.36
1172 1334 1.403687 CCCCCGTCATCTCCTTCCTC 61.404 65.000 0.00 0.00 0.00 3.71
1173 1335 1.736586 CCCGTCATCTCCTTCCTCG 59.263 63.158 0.00 0.00 0.00 4.63
1174 1336 1.066587 CCGTCATCTCCTTCCTCGC 59.933 63.158 0.00 0.00 0.00 5.03
1175 1337 1.066587 CGTCATCTCCTTCCTCGCC 59.933 63.158 0.00 0.00 0.00 5.54
1176 1338 1.388065 CGTCATCTCCTTCCTCGCCT 61.388 60.000 0.00 0.00 0.00 5.52
1177 1339 0.387565 GTCATCTCCTTCCTCGCCTC 59.612 60.000 0.00 0.00 0.00 4.70
1178 1340 0.757188 TCATCTCCTTCCTCGCCTCC 60.757 60.000 0.00 0.00 0.00 4.30
1179 1341 0.758685 CATCTCCTTCCTCGCCTCCT 60.759 60.000 0.00 0.00 0.00 3.69
1180 1342 0.469144 ATCTCCTTCCTCGCCTCCTC 60.469 60.000 0.00 0.00 0.00 3.71
1181 1343 2.440430 TCCTTCCTCGCCTCCTCG 60.440 66.667 0.00 0.00 0.00 4.63
1214 1395 0.657368 CGGCTTTGTTGACTTCGTGC 60.657 55.000 0.00 0.00 0.00 5.34
1285 1467 0.546267 AGGAGAAGGAGCAGCAGGAA 60.546 55.000 0.00 0.00 0.00 3.36
1372 1554 0.616679 AGGAAGGGGGATTCGACGAA 60.617 55.000 13.48 13.48 0.00 3.85
1375 1557 1.206371 GAAGGGGGATTCGACGAAGAA 59.794 52.381 16.40 0.00 34.31 2.52
1378 1560 1.641577 GGGGATTCGACGAAGAACTG 58.358 55.000 16.40 0.00 32.39 3.16
1387 1569 1.289066 CGAAGAACTGACCCTCGCA 59.711 57.895 0.00 0.00 0.00 5.10
1450 1632 0.172803 ACGTATTCCTCACGGTGAGC 59.827 55.000 28.50 15.55 42.98 4.26
1466 1648 3.695606 GCGTCTGACTCCAGCCCA 61.696 66.667 6.21 0.00 40.20 5.36
1658 1855 3.055312 TCTCATCTTCATGTCTGCAGCTT 60.055 43.478 9.47 0.00 0.00 3.74
1704 1901 2.166254 GGTTTTGGTATGGTCTGGCATG 59.834 50.000 0.00 0.00 0.00 4.06
1724 1937 6.024049 GCATGCAGTACAAATTTAGTCACTC 58.976 40.000 14.21 0.00 0.00 3.51
1920 2141 9.247126 TGTCTGTTCATTCAATGTTTTTATGTG 57.753 29.630 0.00 0.00 0.00 3.21
1921 2142 9.248291 GTCTGTTCATTCAATGTTTTTATGTGT 57.752 29.630 0.00 0.00 0.00 3.72
2118 2464 7.041576 CGGTTTAGTGCCTTCTTTTACTACTTT 60.042 37.037 0.00 0.00 0.00 2.66
2182 2528 6.497939 GTGAGTGCACATATTACTTCTACG 57.502 41.667 21.04 0.00 44.51 3.51
2183 2529 6.034591 GTGAGTGCACATATTACTTCTACGT 58.965 40.000 21.04 0.00 44.51 3.57
2190 2536 7.381408 TGCACATATTACTTCTACGTATGAAGC 59.619 37.037 23.26 14.53 43.23 3.86
2317 2667 7.764443 GCATACTCAACTTATGACAAGTTCCTA 59.236 37.037 0.00 0.00 38.32 2.94
2386 2736 3.189287 CCTGTTGTGCAAGTTCTGTATCC 59.811 47.826 0.00 0.00 0.00 2.59
2477 2831 6.389906 GTTATCTCTTGTTTCCCATGTTTGG 58.610 40.000 0.00 0.00 43.23 3.28
2542 2896 2.354003 GGTTGAGGGCCAAATCATTGTG 60.354 50.000 6.18 0.00 36.36 3.33
2653 3007 6.084277 GGAAAGCTTAAATCGTACAAACCAG 58.916 40.000 0.00 0.00 0.00 4.00
2712 3066 0.770557 TACCTGGGCACTGGGAAAGT 60.771 55.000 17.16 0.00 40.93 2.66
2754 3108 7.035612 GTGTTCTCCCAATCCAAACATATTTC 58.964 38.462 0.00 0.00 32.95 2.17
2769 3123 9.590451 CAAACATATTTCCTTTGCTGTAATGAT 57.410 29.630 0.00 0.00 0.00 2.45
2782 3136 5.045942 TGCTGTAATGATACTTCCAGTTCCA 60.046 40.000 0.00 0.00 32.98 3.53
2792 3146 9.559732 TGATACTTCCAGTTCCATAATAATGTG 57.440 33.333 0.00 0.00 0.00 3.21
3120 3478 4.724399 TCAGAATGTCAGGGCTTAACAAA 58.276 39.130 0.00 0.00 37.40 2.83
3200 4374 4.769488 TGTTACTTGATCTGCTGACTCTCT 59.231 41.667 0.00 0.00 0.00 3.10
3227 4404 4.080243 TGCCATTCGGATTTTAACCCTCTA 60.080 41.667 0.00 0.00 0.00 2.43
3301 4479 8.579850 TGCTTTGTCCATAAAGATTATGAGTT 57.420 30.769 10.82 0.00 39.46 3.01
3329 4507 0.615331 CTGCTCACTGCTCCCCTTAA 59.385 55.000 0.00 0.00 43.37 1.85
3416 4594 2.622942 GACAATGAAGGCCTGTCAAACA 59.377 45.455 5.69 0.41 39.42 2.83
3456 4634 2.125229 ATGCCGTGCAGAGCTCAG 60.125 61.111 17.77 9.50 43.65 3.35
3524 4702 3.940209 AGATTGACCGGTTGTACGTAA 57.060 42.857 9.42 0.00 0.00 3.18
3718 4913 0.322098 CCGTTGGTCAGGCATTACCA 60.322 55.000 0.00 0.00 43.99 3.25
3755 4950 1.321474 AATCCAGCTGTGTTGTGGTG 58.679 50.000 13.81 0.00 32.73 4.17
4018 5226 5.432645 TCAAAGGTAATGTATCGGCAATGA 58.567 37.500 0.00 0.00 0.00 2.57
4036 5244 6.433766 GCAATGATTATTTCTGCTGGTCTAC 58.566 40.000 0.00 0.00 0.00 2.59
4048 5256 6.878317 TCTGCTGGTCTACATATATAATGGC 58.122 40.000 0.00 0.00 0.00 4.40
4134 5356 8.257602 TCACAGATACCAGGCAAATATAACTA 57.742 34.615 0.00 0.00 0.00 2.24
4164 5386 3.513515 TGACCAAATTTCCCCAAGTATGC 59.486 43.478 0.00 0.00 0.00 3.14
4166 5388 2.495669 CCAAATTTCCCCAAGTATGCGT 59.504 45.455 0.00 0.00 0.00 5.24
4178 5400 6.402875 CCCCAAGTATGCGTTTACTTTTACTC 60.403 42.308 8.77 0.00 39.75 2.59
4219 5441 5.301551 TCTGCAAGCTGAACTTTTATGGAAA 59.698 36.000 0.00 0.00 36.04 3.13
4306 5531 7.873719 ATCTATATATGGAACTGACGGAGAG 57.126 40.000 2.58 0.00 0.00 3.20
4310 5535 1.118965 TGGAACTGACGGAGAGGCAA 61.119 55.000 0.00 0.00 37.47 4.52
4314 5539 0.674895 ACTGACGGAGAGGCAAATGC 60.675 55.000 0.00 0.00 37.47 3.56
4343 5568 8.059798 AGTATTTGACTTGGAAATGGAATCAG 57.940 34.615 0.00 0.00 33.13 2.90
4346 5571 4.335416 TGACTTGGAAATGGAATCAGGAC 58.665 43.478 0.00 0.00 0.00 3.85
4393 5618 4.589374 AGGTGCCTAGTTGATACAGTATCC 59.411 45.833 16.62 3.82 34.26 2.59
4448 5673 3.217626 ACAGCTTCACCTCAAAAGGAAG 58.782 45.455 0.00 0.00 46.67 3.46
4465 5690 3.138468 AGGAAGGGGGAAAATAGAATCCG 59.862 47.826 0.00 0.00 36.54 4.18
4469 5694 4.729868 AGGGGGAAAATAGAATCCGAATG 58.270 43.478 0.00 0.00 36.54 2.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 1.587043 GCCTTGTTCGAAAGGGCCTC 61.587 60.000 19.99 0.00 45.91 4.70
7 8 2.962569 GCCTTGTTCGAAAGGGCC 59.037 61.111 19.99 0.00 45.91 5.80
8 9 2.561373 CGCCTTGTTCGAAAGGGC 59.439 61.111 20.45 20.45 45.91 5.19
9 10 2.978018 GCCGCCTTGTTCGAAAGGG 61.978 63.158 15.95 11.67 45.91 3.95
11 12 1.912371 GAGGCCGCCTTGTTCGAAAG 61.912 60.000 14.70 0.00 31.76 2.62
12 13 1.964373 GAGGCCGCCTTGTTCGAAA 60.964 57.895 14.70 0.00 31.76 3.46
13 14 2.358247 GAGGCCGCCTTGTTCGAA 60.358 61.111 14.70 0.00 31.76 3.71
14 15 3.311110 AGAGGCCGCCTTGTTCGA 61.311 61.111 14.70 0.00 31.76 3.71
15 16 3.121030 CAGAGGCCGCCTTGTTCG 61.121 66.667 14.70 0.00 31.76 3.95
16 17 3.435186 GCAGAGGCCGCCTTGTTC 61.435 66.667 14.70 0.10 31.76 3.18
24 25 3.777925 CAACGTTCGCAGAGGCCG 61.778 66.667 0.00 0.00 38.43 6.13
25 26 3.423154 CCAACGTTCGCAGAGGCC 61.423 66.667 0.00 0.00 38.43 5.19
26 27 4.090057 GCCAACGTTCGCAGAGGC 62.090 66.667 13.25 10.99 38.43 4.70
27 28 2.664851 TGCCAACGTTCGCAGAGG 60.665 61.111 16.85 6.10 38.43 3.69
34 35 4.090057 GAGCCGCTGCCAACGTTC 62.090 66.667 0.00 0.00 38.69 3.95
35 36 4.626081 AGAGCCGCTGCCAACGTT 62.626 61.111 0.00 0.00 38.69 3.99
38 39 3.123620 CTGAGAGCCGCTGCCAAC 61.124 66.667 0.00 0.00 38.69 3.77
49 50 2.820479 GCTGCTGCAGGCTGAGAG 60.820 66.667 29.05 13.91 41.52 3.20
50 51 4.754667 CGCTGCTGCAGGCTGAGA 62.755 66.667 29.05 2.17 40.78 3.27
70 71 0.465824 AGAATCATCTGCAGCCTGCC 60.466 55.000 15.29 0.00 44.23 4.85
71 72 0.663688 CAGAATCATCTGCAGCCTGC 59.336 55.000 10.45 10.45 46.11 4.85
80 81 8.394121 GCGTTTTCTTTCTAATCAGAATCATCT 58.606 33.333 0.00 0.00 40.47 2.90
81 82 7.371875 CGCGTTTTCTTTCTAATCAGAATCATC 59.628 37.037 0.00 0.00 40.47 2.92
82 83 7.182761 CGCGTTTTCTTTCTAATCAGAATCAT 58.817 34.615 0.00 0.00 40.47 2.45
83 84 6.402118 CCGCGTTTTCTTTCTAATCAGAATCA 60.402 38.462 4.92 0.00 40.47 2.57
84 85 5.960105 CCGCGTTTTCTTTCTAATCAGAATC 59.040 40.000 4.92 0.00 40.47 2.52
86 87 4.153475 CCCGCGTTTTCTTTCTAATCAGAA 59.847 41.667 4.92 0.00 39.06 3.02
87 88 3.682858 CCCGCGTTTTCTTTCTAATCAGA 59.317 43.478 4.92 0.00 0.00 3.27
89 90 2.745281 CCCCGCGTTTTCTTTCTAATCA 59.255 45.455 4.92 0.00 0.00 2.57
90 91 2.745821 ACCCCGCGTTTTCTTTCTAATC 59.254 45.455 4.92 0.00 0.00 1.75
91 92 2.786777 ACCCCGCGTTTTCTTTCTAAT 58.213 42.857 4.92 0.00 0.00 1.73
93 94 2.259266 AACCCCGCGTTTTCTTTCTA 57.741 45.000 4.92 0.00 0.00 2.10
95 96 3.951115 AAACCCCGCGTTTTCTTTC 57.049 47.368 4.92 0.00 42.15 2.62
101 102 0.752376 TCCTTCAAAACCCCGCGTTT 60.752 50.000 4.92 0.00 46.92 3.60
102 103 0.752376 TTCCTTCAAAACCCCGCGTT 60.752 50.000 4.92 0.00 35.70 4.84
104 105 0.318360 GTTTCCTTCAAAACCCCGCG 60.318 55.000 0.00 0.00 33.86 6.46
105 106 0.747852 TGTTTCCTTCAAAACCCCGC 59.252 50.000 0.00 0.00 38.16 6.13
107 108 4.681074 TGATTGTTTCCTTCAAAACCCC 57.319 40.909 0.00 0.00 38.16 4.95
108 109 5.852827 TCATGATTGTTTCCTTCAAAACCC 58.147 37.500 0.00 0.00 38.16 4.11
109 110 6.930722 ACATCATGATTGTTTCCTTCAAAACC 59.069 34.615 5.16 0.00 38.16 3.27
110 111 7.569957 GCACATCATGATTGTTTCCTTCAAAAC 60.570 37.037 5.16 0.00 39.16 2.43
111 112 6.424509 GCACATCATGATTGTTTCCTTCAAAA 59.575 34.615 5.16 0.00 0.00 2.44
112 113 5.927689 GCACATCATGATTGTTTCCTTCAAA 59.072 36.000 5.16 0.00 0.00 2.69
115 116 4.159135 AGGCACATCATGATTGTTTCCTTC 59.841 41.667 5.16 0.00 0.00 3.46
116 117 4.081862 CAGGCACATCATGATTGTTTCCTT 60.082 41.667 5.16 1.08 0.00 3.36
117 118 3.446161 CAGGCACATCATGATTGTTTCCT 59.554 43.478 5.16 12.37 0.00 3.36
118 119 3.444742 TCAGGCACATCATGATTGTTTCC 59.555 43.478 5.16 10.62 29.45 3.13
120 121 4.338012 TCTCAGGCACATCATGATTGTTT 58.662 39.130 5.16 0.00 34.70 2.83
122 123 3.639672 TCTCAGGCACATCATGATTGT 57.360 42.857 5.16 5.26 34.70 2.71
123 124 5.995897 TCTATTCTCAGGCACATCATGATTG 59.004 40.000 5.16 9.17 34.70 2.67
124 125 6.183810 TCTATTCTCAGGCACATCATGATT 57.816 37.500 5.16 0.00 34.70 2.57
125 126 5.280062 CCTCTATTCTCAGGCACATCATGAT 60.280 44.000 1.18 1.18 34.70 2.45
126 127 4.040095 CCTCTATTCTCAGGCACATCATGA 59.960 45.833 0.00 0.00 33.99 3.07
127 128 4.316645 CCTCTATTCTCAGGCACATCATG 58.683 47.826 0.00 0.00 0.00 3.07
128 129 3.327172 CCCTCTATTCTCAGGCACATCAT 59.673 47.826 0.00 0.00 0.00 2.45
129 130 2.702478 CCCTCTATTCTCAGGCACATCA 59.298 50.000 0.00 0.00 0.00 3.07
131 132 1.419387 GCCCTCTATTCTCAGGCACAT 59.581 52.381 0.00 0.00 43.32 3.21
132 133 0.833287 GCCCTCTATTCTCAGGCACA 59.167 55.000 0.00 0.00 43.32 4.57
137 138 3.314635 GCATGTTTGCCCTCTATTCTCAG 59.685 47.826 0.00 0.00 43.38 3.35
138 139 3.282021 GCATGTTTGCCCTCTATTCTCA 58.718 45.455 0.00 0.00 43.38 3.27
139 140 3.978718 GCATGTTTGCCCTCTATTCTC 57.021 47.619 0.00 0.00 43.38 2.87
151 152 6.615264 AGCTACATCATCTTAGCATGTTTG 57.385 37.500 3.61 0.00 42.78 2.93
152 153 8.781196 CATAAGCTACATCATCTTAGCATGTTT 58.219 33.333 3.61 0.00 42.78 2.83
153 154 7.935755 ACATAAGCTACATCATCTTAGCATGTT 59.064 33.333 3.61 0.00 42.78 2.71
154 155 7.387122 CACATAAGCTACATCATCTTAGCATGT 59.613 37.037 3.61 2.93 42.78 3.21
155 156 7.601508 TCACATAAGCTACATCATCTTAGCATG 59.398 37.037 3.61 0.00 42.78 4.06
156 157 7.674120 TCACATAAGCTACATCATCTTAGCAT 58.326 34.615 3.61 0.00 42.78 3.79
157 158 7.054491 TCACATAAGCTACATCATCTTAGCA 57.946 36.000 3.61 0.00 42.78 3.49
158 159 7.655328 AGTTCACATAAGCTACATCATCTTAGC 59.345 37.037 0.00 0.00 40.98 3.09
159 160 8.976471 CAGTTCACATAAGCTACATCATCTTAG 58.024 37.037 0.00 0.00 0.00 2.18
160 161 7.928167 CCAGTTCACATAAGCTACATCATCTTA 59.072 37.037 0.00 0.00 0.00 2.10
161 162 6.765036 CCAGTTCACATAAGCTACATCATCTT 59.235 38.462 0.00 0.00 0.00 2.40
162 163 6.286758 CCAGTTCACATAAGCTACATCATCT 58.713 40.000 0.00 0.00 0.00 2.90
163 164 5.049818 GCCAGTTCACATAAGCTACATCATC 60.050 44.000 0.00 0.00 0.00 2.92
164 165 4.818546 GCCAGTTCACATAAGCTACATCAT 59.181 41.667 0.00 0.00 0.00 2.45
165 166 4.080919 AGCCAGTTCACATAAGCTACATCA 60.081 41.667 0.00 0.00 0.00 3.07
166 167 4.272018 CAGCCAGTTCACATAAGCTACATC 59.728 45.833 0.00 0.00 0.00 3.06
167 168 4.194640 CAGCCAGTTCACATAAGCTACAT 58.805 43.478 0.00 0.00 0.00 2.29
168 169 3.007940 ACAGCCAGTTCACATAAGCTACA 59.992 43.478 0.00 0.00 0.00 2.74
169 170 3.600388 ACAGCCAGTTCACATAAGCTAC 58.400 45.455 0.00 0.00 0.00 3.58
170 171 3.260632 TGACAGCCAGTTCACATAAGCTA 59.739 43.478 0.00 0.00 0.00 3.32
171 172 2.038952 TGACAGCCAGTTCACATAAGCT 59.961 45.455 0.00 0.00 0.00 3.74
172 173 2.417933 CTGACAGCCAGTTCACATAAGC 59.582 50.000 0.00 0.00 38.10 3.09
173 174 2.417933 GCTGACAGCCAGTTCACATAAG 59.582 50.000 17.01 0.00 44.71 1.73
174 175 2.426522 GCTGACAGCCAGTTCACATAA 58.573 47.619 17.01 0.00 44.71 1.90
175 176 2.099141 GCTGACAGCCAGTTCACATA 57.901 50.000 17.01 0.00 44.71 2.29
176 177 2.938354 GCTGACAGCCAGTTCACAT 58.062 52.632 17.01 0.00 44.71 3.21
177 178 4.462394 GCTGACAGCCAGTTCACA 57.538 55.556 17.01 0.00 44.71 3.58
207 208 1.338136 ATCCACCACCGGATCAGACC 61.338 60.000 9.46 0.00 42.36 3.85
208 209 1.410004 TATCCACCACCGGATCAGAC 58.590 55.000 9.46 0.00 42.36 3.51
209 210 2.168458 TTATCCACCACCGGATCAGA 57.832 50.000 9.46 0.00 42.36 3.27
210 211 3.492102 AATTATCCACCACCGGATCAG 57.508 47.619 9.46 0.00 42.36 2.90
211 212 3.943671 AAATTATCCACCACCGGATCA 57.056 42.857 9.46 0.00 42.36 2.92
212 213 3.951680 ACAAAATTATCCACCACCGGATC 59.048 43.478 9.46 0.00 42.36 3.36
214 215 3.443145 ACAAAATTATCCACCACCGGA 57.557 42.857 9.46 0.00 40.07 5.14
215 216 3.066203 GCTACAAAATTATCCACCACCGG 59.934 47.826 0.00 0.00 0.00 5.28
216 217 3.242608 CGCTACAAAATTATCCACCACCG 60.243 47.826 0.00 0.00 0.00 4.94
217 218 3.488553 GCGCTACAAAATTATCCACCACC 60.489 47.826 0.00 0.00 0.00 4.61
218 219 3.377172 AGCGCTACAAAATTATCCACCAC 59.623 43.478 8.99 0.00 0.00 4.16
219 220 3.616219 AGCGCTACAAAATTATCCACCA 58.384 40.909 8.99 0.00 0.00 4.17
220 221 4.814771 ACTAGCGCTACAAAATTATCCACC 59.185 41.667 14.45 0.00 0.00 4.61
221 222 5.277345 CCACTAGCGCTACAAAATTATCCAC 60.277 44.000 14.45 0.00 0.00 4.02
222 223 4.814234 CCACTAGCGCTACAAAATTATCCA 59.186 41.667 14.45 0.00 0.00 3.41
223 224 4.213482 CCCACTAGCGCTACAAAATTATCC 59.787 45.833 14.45 0.00 0.00 2.59
224 225 4.319549 GCCCACTAGCGCTACAAAATTATC 60.320 45.833 14.45 0.00 0.00 1.75
225 226 3.564225 GCCCACTAGCGCTACAAAATTAT 59.436 43.478 14.45 0.00 0.00 1.28
226 227 2.940410 GCCCACTAGCGCTACAAAATTA 59.060 45.455 14.45 0.00 0.00 1.40
227 228 1.743394 GCCCACTAGCGCTACAAAATT 59.257 47.619 14.45 0.00 0.00 1.82
228 229 1.065418 AGCCCACTAGCGCTACAAAAT 60.065 47.619 14.45 0.00 38.01 1.82
229 230 0.323629 AGCCCACTAGCGCTACAAAA 59.676 50.000 14.45 0.00 38.01 2.44
230 231 1.187974 TAGCCCACTAGCGCTACAAA 58.812 50.000 14.45 0.00 36.53 2.83
231 232 1.187974 TTAGCCCACTAGCGCTACAA 58.812 50.000 14.45 0.00 37.31 2.41
232 233 1.134907 GTTTAGCCCACTAGCGCTACA 60.135 52.381 14.45 0.00 37.31 2.74
233 234 1.568606 GTTTAGCCCACTAGCGCTAC 58.431 55.000 14.45 3.14 37.31 3.58
234 235 0.462789 GGTTTAGCCCACTAGCGCTA 59.537 55.000 17.75 17.75 36.53 4.26
235 236 1.221021 GGTTTAGCCCACTAGCGCT 59.779 57.895 17.26 17.26 39.17 5.92
236 237 1.090052 CAGGTTTAGCCCACTAGCGC 61.090 60.000 0.00 0.00 38.26 5.92
237 238 1.090052 GCAGGTTTAGCCCACTAGCG 61.090 60.000 0.00 0.00 38.26 4.26
238 239 0.253327 AGCAGGTTTAGCCCACTAGC 59.747 55.000 0.00 0.00 38.26 3.42
239 240 2.014068 GCAGCAGGTTTAGCCCACTAG 61.014 57.143 0.00 0.00 38.26 2.57
240 241 0.035439 GCAGCAGGTTTAGCCCACTA 60.035 55.000 0.00 0.00 38.26 2.74
241 242 1.303643 GCAGCAGGTTTAGCCCACT 60.304 57.895 0.00 0.00 38.26 4.00
242 243 0.895559 AAGCAGCAGGTTTAGCCCAC 60.896 55.000 0.00 0.00 38.26 4.61
243 244 0.895100 CAAGCAGCAGGTTTAGCCCA 60.895 55.000 0.00 0.00 38.26 5.36
244 245 0.609131 TCAAGCAGCAGGTTTAGCCC 60.609 55.000 0.00 0.00 38.26 5.19
245 246 1.467920 ATCAAGCAGCAGGTTTAGCC 58.532 50.000 0.00 0.00 32.07 3.93
246 247 2.489329 TCAATCAAGCAGCAGGTTTAGC 59.511 45.455 0.00 0.00 32.07 3.09
247 248 4.978083 ATCAATCAAGCAGCAGGTTTAG 57.022 40.909 0.00 0.00 32.07 1.85
248 249 5.945784 ACTTATCAATCAAGCAGCAGGTTTA 59.054 36.000 0.00 0.00 32.07 2.01
249 250 4.768968 ACTTATCAATCAAGCAGCAGGTTT 59.231 37.500 0.00 0.00 32.07 3.27
250 251 4.338879 ACTTATCAATCAAGCAGCAGGTT 58.661 39.130 0.00 0.00 35.46 3.50
251 252 3.960571 ACTTATCAATCAAGCAGCAGGT 58.039 40.909 0.00 0.00 0.00 4.00
252 253 5.121811 AGTACTTATCAATCAAGCAGCAGG 58.878 41.667 0.00 0.00 0.00 4.85
253 254 6.238320 GGAAGTACTTATCAATCAAGCAGCAG 60.238 42.308 8.42 0.00 0.00 4.24
254 255 5.586243 GGAAGTACTTATCAATCAAGCAGCA 59.414 40.000 8.42 0.00 0.00 4.41
255 256 5.819901 AGGAAGTACTTATCAATCAAGCAGC 59.180 40.000 8.42 0.00 0.00 5.25
256 257 6.481644 GGAGGAAGTACTTATCAATCAAGCAG 59.518 42.308 8.42 0.00 0.00 4.24
257 258 6.349300 GGAGGAAGTACTTATCAATCAAGCA 58.651 40.000 8.42 0.00 0.00 3.91
258 259 5.463724 CGGAGGAAGTACTTATCAATCAAGC 59.536 44.000 8.42 0.00 0.00 4.01
259 260 6.574350 ACGGAGGAAGTACTTATCAATCAAG 58.426 40.000 8.42 3.91 0.00 3.02
260 261 6.406624 GGACGGAGGAAGTACTTATCAATCAA 60.407 42.308 8.42 0.00 0.00 2.57
261 262 5.068723 GGACGGAGGAAGTACTTATCAATCA 59.931 44.000 8.42 0.00 0.00 2.57
262 263 5.530712 GGACGGAGGAAGTACTTATCAATC 58.469 45.833 8.42 10.28 0.00 2.67
263 264 4.037684 CGGACGGAGGAAGTACTTATCAAT 59.962 45.833 8.42 2.18 0.00 2.57
264 265 3.379372 CGGACGGAGGAAGTACTTATCAA 59.621 47.826 8.42 0.00 0.00 2.57
265 266 2.947652 CGGACGGAGGAAGTACTTATCA 59.052 50.000 8.42 0.00 0.00 2.15
266 267 2.292845 CCGGACGGAGGAAGTACTTATC 59.707 54.545 8.42 9.71 37.50 1.75
267 268 2.092212 TCCGGACGGAGGAAGTACTTAT 60.092 50.000 8.42 0.00 39.76 1.73
268 269 1.281867 TCCGGACGGAGGAAGTACTTA 59.718 52.381 8.42 0.00 39.76 2.24
269 270 0.038744 TCCGGACGGAGGAAGTACTT 59.961 55.000 8.13 8.13 39.76 2.24
270 271 0.038744 TTCCGGACGGAGGAAGTACT 59.961 55.000 13.64 0.00 46.06 2.73
271 272 2.571548 TTCCGGACGGAGGAAGTAC 58.428 57.895 13.64 0.00 46.06 2.73
275 276 1.856629 AGTATTTCCGGACGGAGGAA 58.143 50.000 13.64 6.93 46.06 3.36
276 277 1.479323 CAAGTATTTCCGGACGGAGGA 59.521 52.381 13.64 7.39 46.06 3.71
277 278 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
278 279 2.094390 TGACAAGTATTTCCGGACGGAG 60.094 50.000 13.64 3.15 46.06 4.63
279 280 1.894466 TGACAAGTATTTCCGGACGGA 59.106 47.619 1.83 9.76 43.52 4.69
280 281 2.373540 TGACAAGTATTTCCGGACGG 57.626 50.000 1.83 3.96 0.00 4.79
281 282 3.517602 TGATGACAAGTATTTCCGGACG 58.482 45.455 1.83 0.00 0.00 4.79
282 283 5.873179 TTTGATGACAAGTATTTCCGGAC 57.127 39.130 1.83 0.00 37.32 4.79
283 284 6.127758 CCATTTTGATGACAAGTATTTCCGGA 60.128 38.462 0.00 0.00 37.32 5.14
284 285 6.035843 CCATTTTGATGACAAGTATTTCCGG 58.964 40.000 0.00 0.00 37.32 5.14
285 286 6.851609 TCCATTTTGATGACAAGTATTTCCG 58.148 36.000 0.00 0.00 37.32 4.30
291 292 9.527157 TCCTTTTATCCATTTTGATGACAAGTA 57.473 29.630 0.00 0.00 37.32 2.24
292 293 8.421249 TCCTTTTATCCATTTTGATGACAAGT 57.579 30.769 0.00 0.00 37.32 3.16
293 294 8.742777 TCTCCTTTTATCCATTTTGATGACAAG 58.257 33.333 0.00 0.00 37.32 3.16
294 295 8.648698 TCTCCTTTTATCCATTTTGATGACAA 57.351 30.769 0.00 0.00 0.00 3.18
295 296 8.689061 CATCTCCTTTTATCCATTTTGATGACA 58.311 33.333 0.00 0.00 32.05 3.58
296 297 8.689972 ACATCTCCTTTTATCCATTTTGATGAC 58.310 33.333 0.00 0.00 33.85 3.06
297 298 8.827832 ACATCTCCTTTTATCCATTTTGATGA 57.172 30.769 0.00 0.00 33.85 2.92
306 307 9.607333 ACATCTAGATACATCTCCTTTTATCCA 57.393 33.333 4.54 0.00 38.32 3.41
355 356 9.829507 AATACTTGTCATCAAAATGGACAAAAA 57.170 25.926 7.70 0.55 34.98 1.94
356 357 9.829507 AAATACTTGTCATCAAAATGGACAAAA 57.170 25.926 7.70 0.84 34.98 2.44
357 358 9.829507 AAAATACTTGTCATCAAAATGGACAAA 57.170 25.926 7.70 0.00 34.98 2.83
358 359 9.474920 GAAAATACTTGTCATCAAAATGGACAA 57.525 29.630 0.00 0.00 34.59 3.18
359 360 8.087750 GGAAAATACTTGTCATCAAAATGGACA 58.912 33.333 0.00 0.00 33.42 4.02
360 361 7.273381 CGGAAAATACTTGTCATCAAAATGGAC 59.727 37.037 0.00 0.00 33.42 4.02
361 362 7.175816 TCGGAAAATACTTGTCATCAAAATGGA 59.824 33.333 0.00 0.00 33.42 3.41
362 363 7.273381 GTCGGAAAATACTTGTCATCAAAATGG 59.727 37.037 0.00 0.00 33.42 3.16
363 364 7.007367 CGTCGGAAAATACTTGTCATCAAAATG 59.993 37.037 0.00 0.00 32.87 2.32
364 365 7.021196 CGTCGGAAAATACTTGTCATCAAAAT 58.979 34.615 0.00 0.00 32.87 1.82
365 366 6.367421 CGTCGGAAAATACTTGTCATCAAAA 58.633 36.000 0.00 0.00 32.87 2.44
366 367 5.106869 CCGTCGGAAAATACTTGTCATCAAA 60.107 40.000 4.91 0.00 32.87 2.69
367 368 4.390603 CCGTCGGAAAATACTTGTCATCAA 59.609 41.667 4.91 0.00 0.00 2.57
368 369 3.930229 CCGTCGGAAAATACTTGTCATCA 59.070 43.478 4.91 0.00 0.00 3.07
369 370 4.178540 TCCGTCGGAAAATACTTGTCATC 58.821 43.478 12.68 0.00 0.00 2.92
370 371 4.181578 CTCCGTCGGAAAATACTTGTCAT 58.818 43.478 16.23 0.00 0.00 3.06
371 372 3.581755 CTCCGTCGGAAAATACTTGTCA 58.418 45.455 16.23 0.00 0.00 3.58
372 373 2.928116 CCTCCGTCGGAAAATACTTGTC 59.072 50.000 16.23 0.00 0.00 3.18
373 374 2.354403 CCCTCCGTCGGAAAATACTTGT 60.354 50.000 16.23 0.00 0.00 3.16
374 375 2.093869 TCCCTCCGTCGGAAAATACTTG 60.094 50.000 16.23 0.47 0.00 3.16
375 376 2.167900 CTCCCTCCGTCGGAAAATACTT 59.832 50.000 16.23 0.00 0.00 2.24
376 377 1.755380 CTCCCTCCGTCGGAAAATACT 59.245 52.381 16.23 0.00 0.00 2.12
377 378 1.479730 ACTCCCTCCGTCGGAAAATAC 59.520 52.381 16.23 0.00 0.00 1.89
378 379 1.856629 ACTCCCTCCGTCGGAAAATA 58.143 50.000 16.23 0.42 0.00 1.40
379 380 1.856629 TACTCCCTCCGTCGGAAAAT 58.143 50.000 16.23 2.15 0.00 1.82
380 381 1.273327 GTTACTCCCTCCGTCGGAAAA 59.727 52.381 16.23 2.66 0.00 2.29
381 382 0.890683 GTTACTCCCTCCGTCGGAAA 59.109 55.000 16.23 2.35 0.00 3.13
382 383 0.251297 TGTTACTCCCTCCGTCGGAA 60.251 55.000 16.23 0.00 0.00 4.30
383 384 0.679002 CTGTTACTCCCTCCGTCGGA 60.679 60.000 14.54 14.54 0.00 4.55
384 385 0.679002 TCTGTTACTCCCTCCGTCGG 60.679 60.000 4.39 4.39 0.00 4.79
385 386 0.450983 GTCTGTTACTCCCTCCGTCG 59.549 60.000 0.00 0.00 0.00 5.12
386 387 0.450983 CGTCTGTTACTCCCTCCGTC 59.549 60.000 0.00 0.00 0.00 4.79
387 388 0.964358 CCGTCTGTTACTCCCTCCGT 60.964 60.000 0.00 0.00 0.00 4.69
388 389 1.664321 CCCGTCTGTTACTCCCTCCG 61.664 65.000 0.00 0.00 0.00 4.63
389 390 1.328430 CCCCGTCTGTTACTCCCTCC 61.328 65.000 0.00 0.00 0.00 4.30
390 391 1.957765 GCCCCGTCTGTTACTCCCTC 61.958 65.000 0.00 0.00 0.00 4.30
391 392 1.988406 GCCCCGTCTGTTACTCCCT 60.988 63.158 0.00 0.00 0.00 4.20
392 393 1.988406 AGCCCCGTCTGTTACTCCC 60.988 63.158 0.00 0.00 0.00 4.30
393 394 1.218316 CAGCCCCGTCTGTTACTCC 59.782 63.158 0.00 0.00 0.00 3.85
394 395 0.824759 ATCAGCCCCGTCTGTTACTC 59.175 55.000 0.00 0.00 35.63 2.59
413 414 1.066430 GGATTTCAGGACTACGGTGCA 60.066 52.381 0.00 0.00 36.20 4.57
419 420 1.404391 TCGCGAGGATTTCAGGACTAC 59.596 52.381 3.71 0.00 0.00 2.73
435 436 3.666153 CGACGACACAAATATCGCG 57.334 52.632 0.00 0.00 42.12 5.87
496 497 1.837439 ACCGCATCCTGAGTTATCCAA 59.163 47.619 0.00 0.00 0.00 3.53
509 510 3.499737 CGACCAGGCAACCGCATC 61.500 66.667 0.00 0.00 41.24 3.91
525 526 0.528466 AGAGTATCACGCATGCCACG 60.528 55.000 13.15 0.00 37.82 4.94
535 540 4.611807 CGCTCATCGGAACTAGAGTATCAC 60.612 50.000 0.00 0.00 33.28 3.06
561 659 2.969238 GAGCACGATCGGCATGGG 60.969 66.667 24.07 7.74 0.00 4.00
562 660 2.969238 GGAGCACGATCGGCATGG 60.969 66.667 24.07 9.24 0.00 3.66
563 661 2.969238 GGGAGCACGATCGGCATG 60.969 66.667 24.07 13.91 0.00 4.06
564 662 3.451556 CTGGGAGCACGATCGGCAT 62.452 63.158 24.07 13.04 0.00 4.40
565 663 4.147449 CTGGGAGCACGATCGGCA 62.147 66.667 24.07 8.20 0.00 5.69
566 664 4.899239 CCTGGGAGCACGATCGGC 62.899 72.222 20.98 18.95 0.00 5.54
567 665 4.899239 GCCTGGGAGCACGATCGG 62.899 72.222 20.98 9.59 0.00 4.18
581 679 3.241530 TGAGGTTGTGAGCCGCCT 61.242 61.111 0.00 0.00 0.00 5.52
587 685 2.733552 CGAACATCTGTGAGGTTGTGAG 59.266 50.000 2.32 0.00 36.68 3.51
593 691 2.029828 GTGACTCGAACATCTGTGAGGT 60.030 50.000 0.00 0.00 32.76 3.85
596 694 1.068541 CCGTGACTCGAACATCTGTGA 60.069 52.381 0.00 0.00 42.86 3.58
597 695 1.340658 CCGTGACTCGAACATCTGTG 58.659 55.000 0.00 0.00 42.86 3.66
607 705 0.948623 TCAACATTGGCCGTGACTCG 60.949 55.000 14.26 0.00 39.52 4.18
618 716 1.194547 CCACGAACTCGGTCAACATTG 59.805 52.381 3.88 0.00 44.95 2.82
649 747 1.876156 GGTTGTGGCAAAGAGTGAGAG 59.124 52.381 0.00 0.00 0.00 3.20
650 748 1.476833 GGGTTGTGGCAAAGAGTGAGA 60.477 52.381 0.00 0.00 0.00 3.27
654 752 0.395173 AACGGGTTGTGGCAAAGAGT 60.395 50.000 0.00 0.00 0.00 3.24
656 754 1.388065 CCAACGGGTTGTGGCAAAGA 61.388 55.000 10.37 0.00 38.85 2.52
659 757 2.835431 CCCAACGGGTTGTGGCAA 60.835 61.111 10.37 0.00 38.25 4.52
860 987 1.524165 TGGGGTGTTTTGTCGTCGG 60.524 57.895 0.00 0.00 0.00 4.79
919 1054 2.058595 CGAGGTGGGTAGTGGGGAG 61.059 68.421 0.00 0.00 0.00 4.30
944 1079 2.821366 GGCAGTGTGAGATGGGCG 60.821 66.667 0.00 0.00 0.00 6.13
949 1084 2.046892 GGCGTGGCAGTGTGAGAT 60.047 61.111 0.00 0.00 0.00 2.75
950 1085 4.314440 GGGCGTGGCAGTGTGAGA 62.314 66.667 0.00 0.00 0.00 3.27
959 1101 3.999297 TATTTTCCCGGGGCGTGGC 62.999 63.158 23.50 0.00 0.00 5.01
963 1116 0.251165 ATGGATATTTTCCCGGGGCG 60.251 55.000 23.50 0.00 44.77 6.13
964 1117 1.545841 GATGGATATTTTCCCGGGGC 58.454 55.000 23.50 1.29 44.77 5.80
972 1125 2.040412 GCGGAGAGGGGATGGATATTTT 59.960 50.000 0.00 0.00 0.00 1.82
1108 1264 2.107141 GAGGACGGCCGGATTGAG 59.893 66.667 31.76 0.00 39.96 3.02
1159 1321 0.757188 GGAGGCGAGGAAGGAGATGA 60.757 60.000 0.00 0.00 0.00 2.92
1160 1322 0.758685 AGGAGGCGAGGAAGGAGATG 60.759 60.000 0.00 0.00 0.00 2.90
1161 1323 0.469144 GAGGAGGCGAGGAAGGAGAT 60.469 60.000 0.00 0.00 0.00 2.75
1162 1324 1.076632 GAGGAGGCGAGGAAGGAGA 60.077 63.158 0.00 0.00 0.00 3.71
1163 1325 2.485795 CGAGGAGGCGAGGAAGGAG 61.486 68.421 0.00 0.00 0.00 3.69
1164 1326 2.440430 CGAGGAGGCGAGGAAGGA 60.440 66.667 0.00 0.00 0.00 3.36
1165 1327 4.214327 GCGAGGAGGCGAGGAAGG 62.214 72.222 0.00 0.00 0.00 3.46
1166 1328 4.214327 GGCGAGGAGGCGAGGAAG 62.214 72.222 0.00 0.00 35.04 3.46
1194 1356 0.655733 CACGAAGTCAACAAAGCCGT 59.344 50.000 0.00 0.00 41.61 5.68
1196 1358 0.317854 GGCACGAAGTCAACAAAGCC 60.318 55.000 0.00 0.00 41.61 4.35
1345 1527 4.089757 CCCCCTTCCTCCTCCGGA 62.090 72.222 2.93 2.93 0.00 5.14
1372 1554 2.948720 GCCTGCGAGGGTCAGTTCT 61.949 63.158 4.65 0.00 35.37 3.01
1466 1648 2.588877 CGAATGCGCCGGGAATCT 60.589 61.111 4.18 0.00 0.00 2.40
1658 1855 8.753133 CCATATATGTAGAGGCAGAATTCAGTA 58.247 37.037 11.73 0.00 0.00 2.74
1704 1901 7.171678 ACAAGAGAGTGACTAAATTTGTACTGC 59.828 37.037 0.00 0.00 0.00 4.40
1724 1937 8.092521 ACAATCAATCAGTCAGTTAACAAGAG 57.907 34.615 8.61 0.00 0.00 2.85
2029 2317 8.843262 CAATGCCTGATATGAACAAAGAGATTA 58.157 33.333 0.00 0.00 0.00 1.75
2030 2318 7.201884 CCAATGCCTGATATGAACAAAGAGATT 60.202 37.037 0.00 0.00 0.00 2.40
2031 2319 6.264744 CCAATGCCTGATATGAACAAAGAGAT 59.735 38.462 0.00 0.00 0.00 2.75
2032 2320 5.591472 CCAATGCCTGATATGAACAAAGAGA 59.409 40.000 0.00 0.00 0.00 3.10
2033 2321 5.221185 CCCAATGCCTGATATGAACAAAGAG 60.221 44.000 0.00 0.00 0.00 2.85
2034 2322 4.646040 CCCAATGCCTGATATGAACAAAGA 59.354 41.667 0.00 0.00 0.00 2.52
2035 2323 4.403432 ACCCAATGCCTGATATGAACAAAG 59.597 41.667 0.00 0.00 0.00 2.77
2036 2324 4.160065 CACCCAATGCCTGATATGAACAAA 59.840 41.667 0.00 0.00 0.00 2.83
2037 2325 3.700539 CACCCAATGCCTGATATGAACAA 59.299 43.478 0.00 0.00 0.00 2.83
2038 2326 3.289836 CACCCAATGCCTGATATGAACA 58.710 45.455 0.00 0.00 0.00 3.18
2317 2667 2.041620 TGCCTTACCTCCATTGAGCTTT 59.958 45.455 0.00 0.00 37.29 3.51
2386 2736 6.461509 GGGTGCTGTTATTCCATAAAATCCTG 60.462 42.308 0.00 0.00 0.00 3.86
2477 2831 5.310720 ACAGAAGGTTGTTCACTTCAAAC 57.689 39.130 7.12 0.00 44.20 2.93
2712 3066 6.426937 GGAGAACACATTAACTGAGTTAGCAA 59.573 38.462 5.10 0.00 38.56 3.91
2754 3108 6.369059 CTGGAAGTATCATTACAGCAAAGG 57.631 41.667 0.00 0.00 34.44 3.11
2769 3123 7.715249 GCTCACATTATTATGGAACTGGAAGTA 59.285 37.037 0.00 0.00 40.78 2.24
2792 3146 5.974751 CCTCTGAAATAAGAACGAGTAGCTC 59.025 44.000 0.00 0.00 0.00 4.09
2970 3328 4.500205 GCCATGCAAGCAATAAGCATAGAA 60.500 41.667 7.18 0.00 46.39 2.10
3092 3450 1.200020 GCCCTGACATTCTGAAAACCG 59.800 52.381 0.00 0.00 0.00 4.44
3120 3478 2.603075 TTCCCAAAGCTACAGGCAAT 57.397 45.000 0.00 0.00 44.79 3.56
3200 4374 4.399934 GGGTTAAAATCCGAATGGCAGTAA 59.600 41.667 0.00 0.00 34.14 2.24
3227 4404 9.613428 TTTTTATAGGCGCTATATTATCAGCAT 57.387 29.630 7.64 0.00 37.66 3.79
3329 4507 5.754782 TCATACAAGTTATCTGCAATGGGT 58.245 37.500 0.00 0.00 0.00 4.51
3416 4594 1.003233 GGAGAACGGAGGGTTTCATGT 59.997 52.381 0.00 0.00 39.50 3.21
3456 4634 5.759273 AGAATCATTCTGCATCAGCTTCTAC 59.241 40.000 0.00 0.00 42.74 2.59
3491 4669 3.428045 CGGTCAATCTTCATTTCCAAGGC 60.428 47.826 0.00 0.00 0.00 4.35
3686 4879 1.354337 CCAACGGTGCACATCTCTCG 61.354 60.000 20.43 14.03 0.00 4.04
3718 4913 2.114488 TTACACCGTTCATGGCCCGT 62.114 55.000 0.00 0.00 0.00 5.28
3770 4965 4.998671 TCCTTCAACAAGCATCAAAACA 57.001 36.364 0.00 0.00 0.00 2.83
3957 5165 5.543507 ATCTCCTAGAGCGAATGTTCAAT 57.456 39.130 0.00 0.00 0.00 2.57
4082 5290 6.561737 TTCATTTGCGTTTCTTATACACCA 57.438 33.333 0.00 0.00 0.00 4.17
4164 5386 6.421202 AGAGCACTGAAGAGTAAAAGTAAACG 59.579 38.462 0.00 0.00 0.00 3.60
4166 5388 7.226720 CCAAGAGCACTGAAGAGTAAAAGTAAA 59.773 37.037 0.00 0.00 0.00 2.01
4288 5512 1.689273 GCCTCTCCGTCAGTTCCATAT 59.311 52.381 0.00 0.00 0.00 1.78
4306 5531 3.119495 AGTCAAATACTTCCGCATTTGCC 60.119 43.478 0.00 0.00 40.41 4.52
4310 5535 4.331968 TCCAAGTCAAATACTTCCGCATT 58.668 39.130 0.00 0.00 45.64 3.56
4314 5539 5.414454 TCCATTTCCAAGTCAAATACTTCCG 59.586 40.000 0.00 0.00 45.64 4.30
4328 5553 4.933134 TGATGTCCTGATTCCATTTCCAA 58.067 39.130 0.00 0.00 0.00 3.53
4343 5568 4.091365 GCGGCTGTTTTAAATTTGATGTCC 59.909 41.667 0.00 0.00 0.00 4.02
4346 5571 4.434593 GCTGCGGCTGTTTTAAATTTGATG 60.435 41.667 11.21 0.00 35.22 3.07
4448 5673 3.255888 GCATTCGGATTCTATTTTCCCCC 59.744 47.826 0.00 0.00 0.00 5.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.