Multiple sequence alignment - TraesCS2D01G542100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G542100 chr2D 100.000 3776 0 0 1 3776 620687402 620683627 0.000000e+00 6974.0
1 TraesCS2D01G542100 chr2D 95.286 297 13 1 2113 2408 42069855 42070151 1.590000e-128 470.0
2 TraesCS2D01G542100 chr2D 98.171 164 3 0 1 164 619908852 619909015 1.720000e-73 287.0
3 TraesCS2D01G542100 chr2A 95.391 1497 45 9 629 2113 752338294 752336810 0.000000e+00 2361.0
4 TraesCS2D01G542100 chr2A 95.935 1353 50 3 2426 3776 752336811 752335462 0.000000e+00 2189.0
5 TraesCS2D01G542100 chr2A 92.975 242 17 0 268 509 752338544 752338303 1.670000e-93 353.0
6 TraesCS2D01G542100 chr2B 84.120 1102 103 29 700 1760 761329481 761328411 0.000000e+00 1000.0
7 TraesCS2D01G542100 chr2B 87.689 528 54 8 2426 2947 761328184 761327662 4.170000e-169 604.0
8 TraesCS2D01G542100 chr2B 89.139 267 20 6 1855 2113 761328448 761328183 1.310000e-84 324.0
9 TraesCS2D01G542100 chr2B 81.641 256 47 0 2438 2693 761323051 761322796 2.950000e-51 213.0
10 TraesCS2D01G542100 chr7D 95.652 299 10 3 2113 2408 201830248 201830546 9.490000e-131 477.0
11 TraesCS2D01G542100 chr7D 95.578 294 12 1 2116 2408 185552143 185551850 1.590000e-128 470.0
12 TraesCS2D01G542100 chr6D 94.737 304 14 2 2124 2425 49118695 49118998 4.410000e-129 472.0
13 TraesCS2D01G542100 chr4D 94.949 297 13 2 2113 2408 133139558 133139853 7.390000e-127 464.0
14 TraesCS2D01G542100 chr4D 93.333 315 19 2 2113 2425 220005743 220005429 7.390000e-127 464.0
15 TraesCS2D01G542100 chr6B 92.381 315 23 1 2113 2426 588827584 588827898 7.440000e-122 448.0
16 TraesCS2D01G542100 chr4B 92.138 318 23 2 2113 2429 575600690 575601006 7.440000e-122 448.0
17 TraesCS2D01G542100 chr4B 92.089 316 23 2 2113 2426 624511398 624511713 9.620000e-121 444.0
18 TraesCS2D01G542100 chr1A 91.971 274 21 1 2134 2406 93404740 93405013 2.130000e-102 383.0
19 TraesCS2D01G542100 chr1A 98.171 164 3 0 1 164 252085653 252085816 1.720000e-73 287.0
20 TraesCS2D01G542100 chr7B 98.171 164 3 0 1 164 87984955 87984792 1.720000e-73 287.0
21 TraesCS2D01G542100 chr6A 98.171 164 3 0 1 164 4028767 4028930 1.720000e-73 287.0
22 TraesCS2D01G542100 chr6A 98.171 164 3 0 1 164 499926210 499926047 1.720000e-73 287.0
23 TraesCS2D01G542100 chr6A 98.171 164 3 0 1 164 546447738 546447575 1.720000e-73 287.0
24 TraesCS2D01G542100 chr4A 98.171 164 3 0 1 164 151406147 151405984 1.720000e-73 287.0
25 TraesCS2D01G542100 chr4A 94.872 39 2 0 3258 3296 720018495 720018457 1.130000e-05 62.1
26 TraesCS2D01G542100 chr4A 97.143 35 1 0 2398 2432 38733089 38733055 4.070000e-05 60.2
27 TraesCS2D01G542100 chr1D 98.171 164 3 0 1 164 326759546 326759383 1.720000e-73 287.0
28 TraesCS2D01G542100 chr1B 98.171 164 3 0 1 164 145488493 145488330 1.720000e-73 287.0
29 TraesCS2D01G542100 chr3D 83.077 260 38 2 2451 2707 82413112 82413368 8.160000e-57 231.0
30 TraesCS2D01G542100 chr3B 82.308 260 40 2 2451 2707 128949523 128949779 1.770000e-53 220.0
31 TraesCS2D01G542100 chr3A 81.538 260 42 2 2451 2707 97974205 97974461 3.820000e-50 209.0
32 TraesCS2D01G542100 chr3A 80.000 275 45 8 3037 3303 707987628 707987900 1.070000e-45 195.0
33 TraesCS2D01G542100 chr7A 78.986 138 27 2 3160 3296 730564900 730564764 4.020000e-15 93.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G542100 chr2D 620683627 620687402 3775 True 6974.000000 6974 100.000000 1 3776 1 chr2D.!!$R1 3775
1 TraesCS2D01G542100 chr2A 752335462 752338544 3082 True 1634.333333 2361 94.767000 268 3776 3 chr2A.!!$R1 3508
2 TraesCS2D01G542100 chr2B 761327662 761329481 1819 True 642.666667 1000 86.982667 700 2947 3 chr2B.!!$R2 2247

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
293 294 0.035439 ATGACGACCAACACATCCCC 60.035 55.0 0.0 0.0 0.00 4.81 F
1905 1957 0.255890 AGCCTTACATGCCGTCCATT 59.744 50.0 0.0 0.0 29.71 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2292 2351 0.105408 CTTGGGCTTGGCATATTGGC 59.895 55.0 0.0 0.0 44.03 4.52 R
3011 3075 0.307760 GGAATTTATCGCCGCCAGTG 59.692 55.0 0.0 0.0 0.00 3.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 9.561069 GCTACTGAAAATTATTATGAGGAAGGA 57.439 33.333 0.00 0.00 0.00 3.36
29 30 9.753674 ACTGAAAATTATTATGAGGAAGGAACA 57.246 29.630 0.00 0.00 0.00 3.18
41 42 7.009179 TGAGGAAGGAACATATGCTTATAGG 57.991 40.000 1.58 0.00 40.16 2.57
42 43 6.787458 TGAGGAAGGAACATATGCTTATAGGA 59.213 38.462 1.58 0.00 40.16 2.94
43 44 7.292356 TGAGGAAGGAACATATGCTTATAGGAA 59.708 37.037 1.58 0.00 40.16 3.36
44 45 8.224620 AGGAAGGAACATATGCTTATAGGAAT 57.775 34.615 1.58 0.00 40.16 3.01
45 46 8.673251 AGGAAGGAACATATGCTTATAGGAATT 58.327 33.333 1.58 0.00 40.16 2.17
46 47 8.734386 GGAAGGAACATATGCTTATAGGAATTG 58.266 37.037 1.58 0.00 40.16 2.32
47 48 7.693969 AGGAACATATGCTTATAGGAATTGC 57.306 36.000 1.58 0.00 0.00 3.56
48 49 7.233632 AGGAACATATGCTTATAGGAATTGCA 58.766 34.615 1.58 0.00 38.05 4.08
49 50 7.725397 AGGAACATATGCTTATAGGAATTGCAA 59.275 33.333 0.00 0.00 37.20 4.08
50 51 8.526147 GGAACATATGCTTATAGGAATTGCAAT 58.474 33.333 5.99 5.99 37.20 3.56
65 66 9.205513 AGGAATTGCAATAATATCAAGTTTCCT 57.794 29.630 13.39 13.76 35.78 3.36
66 67 9.468532 GGAATTGCAATAATATCAAGTTTCCTC 57.531 33.333 13.39 0.24 31.31 3.71
69 70 9.638176 ATTGCAATAATATCAAGTTTCCTCTCT 57.362 29.630 11.02 0.00 0.00 3.10
75 76 3.914426 TCAAGTTTCCTCTCTATGGGC 57.086 47.619 0.00 0.00 0.00 5.36
76 77 3.454858 TCAAGTTTCCTCTCTATGGGCT 58.545 45.455 0.00 0.00 0.00 5.19
77 78 3.846588 TCAAGTTTCCTCTCTATGGGCTT 59.153 43.478 0.00 0.00 0.00 4.35
78 79 5.030147 TCAAGTTTCCTCTCTATGGGCTTA 58.970 41.667 0.00 0.00 0.00 3.09
79 80 5.487488 TCAAGTTTCCTCTCTATGGGCTTAA 59.513 40.000 0.00 0.00 0.00 1.85
80 81 6.012858 TCAAGTTTCCTCTCTATGGGCTTAAA 60.013 38.462 0.00 0.00 0.00 1.52
81 82 5.995446 AGTTTCCTCTCTATGGGCTTAAAG 58.005 41.667 0.00 0.00 0.00 1.85
82 83 5.489278 AGTTTCCTCTCTATGGGCTTAAAGT 59.511 40.000 0.00 0.00 0.00 2.66
83 84 6.012421 AGTTTCCTCTCTATGGGCTTAAAGTT 60.012 38.462 0.00 0.00 0.00 2.66
84 85 6.388619 TTCCTCTCTATGGGCTTAAAGTTT 57.611 37.500 0.00 0.00 0.00 2.66
85 86 6.388619 TCCTCTCTATGGGCTTAAAGTTTT 57.611 37.500 0.00 0.00 0.00 2.43
86 87 6.180472 TCCTCTCTATGGGCTTAAAGTTTTG 58.820 40.000 0.00 0.00 0.00 2.44
87 88 6.012858 TCCTCTCTATGGGCTTAAAGTTTTGA 60.013 38.462 0.00 0.00 0.00 2.69
88 89 6.659242 CCTCTCTATGGGCTTAAAGTTTTGAA 59.341 38.462 0.00 0.00 0.00 2.69
89 90 7.148171 CCTCTCTATGGGCTTAAAGTTTTGAAG 60.148 40.741 0.00 0.00 0.00 3.02
90 91 7.231467 TCTCTATGGGCTTAAAGTTTTGAAGT 58.769 34.615 0.00 0.00 0.00 3.01
91 92 7.724061 TCTCTATGGGCTTAAAGTTTTGAAGTT 59.276 33.333 0.00 0.00 0.00 2.66
92 93 8.927675 TCTATGGGCTTAAAGTTTTGAAGTTA 57.072 30.769 0.00 0.00 0.00 2.24
93 94 9.528489 TCTATGGGCTTAAAGTTTTGAAGTTAT 57.472 29.630 0.00 0.00 0.00 1.89
94 95 9.573133 CTATGGGCTTAAAGTTTTGAAGTTATG 57.427 33.333 0.00 0.00 0.00 1.90
95 96 6.220201 TGGGCTTAAAGTTTTGAAGTTATGC 58.780 36.000 0.00 0.00 0.00 3.14
96 97 6.041523 TGGGCTTAAAGTTTTGAAGTTATGCT 59.958 34.615 0.00 0.00 0.00 3.79
97 98 6.929049 GGGCTTAAAGTTTTGAAGTTATGCTT 59.071 34.615 0.00 0.00 40.76 3.91
98 99 7.095649 GGGCTTAAAGTTTTGAAGTTATGCTTG 60.096 37.037 0.00 0.00 37.59 4.01
99 100 7.438160 GGCTTAAAGTTTTGAAGTTATGCTTGT 59.562 33.333 0.00 0.00 37.59 3.16
100 101 8.817100 GCTTAAAGTTTTGAAGTTATGCTTGTT 58.183 29.630 0.00 0.00 37.59 2.83
105 106 8.642908 AGTTTTGAAGTTATGCTTGTTTTACC 57.357 30.769 0.00 0.00 37.59 2.85
106 107 8.474831 AGTTTTGAAGTTATGCTTGTTTTACCT 58.525 29.630 0.00 0.00 37.59 3.08
107 108 9.093970 GTTTTGAAGTTATGCTTGTTTTACCTT 57.906 29.630 0.00 0.00 37.59 3.50
108 109 8.865590 TTTGAAGTTATGCTTGTTTTACCTTC 57.134 30.769 0.00 0.00 37.59 3.46
109 110 6.977213 TGAAGTTATGCTTGTTTTACCTTCC 58.023 36.000 0.00 0.00 37.59 3.46
110 111 6.775629 TGAAGTTATGCTTGTTTTACCTTCCT 59.224 34.615 0.00 0.00 37.59 3.36
111 112 7.940137 TGAAGTTATGCTTGTTTTACCTTCCTA 59.060 33.333 0.00 0.00 37.59 2.94
112 113 8.879427 AAGTTATGCTTGTTTTACCTTCCTAT 57.121 30.769 0.00 0.00 35.80 2.57
113 114 8.281212 AGTTATGCTTGTTTTACCTTCCTATG 57.719 34.615 0.00 0.00 0.00 2.23
114 115 5.582689 ATGCTTGTTTTACCTTCCTATGC 57.417 39.130 0.00 0.00 0.00 3.14
115 116 4.402829 TGCTTGTTTTACCTTCCTATGCA 58.597 39.130 0.00 0.00 0.00 3.96
116 117 4.830046 TGCTTGTTTTACCTTCCTATGCAA 59.170 37.500 0.00 0.00 0.00 4.08
117 118 5.048083 TGCTTGTTTTACCTTCCTATGCAAG 60.048 40.000 0.00 0.00 35.35 4.01
118 119 5.048013 GCTTGTTTTACCTTCCTATGCAAGT 60.048 40.000 0.00 0.00 34.89 3.16
119 120 6.516693 GCTTGTTTTACCTTCCTATGCAAGTT 60.517 38.462 0.00 0.00 34.89 2.66
120 121 6.325919 TGTTTTACCTTCCTATGCAAGTTG 57.674 37.500 0.00 0.00 0.00 3.16
121 122 6.065374 TGTTTTACCTTCCTATGCAAGTTGA 58.935 36.000 7.16 0.00 0.00 3.18
122 123 6.719370 TGTTTTACCTTCCTATGCAAGTTGAT 59.281 34.615 7.16 0.20 0.00 2.57
123 124 7.232534 TGTTTTACCTTCCTATGCAAGTTGATT 59.767 33.333 7.16 0.00 0.00 2.57
124 125 7.391148 TTTACCTTCCTATGCAAGTTGATTC 57.609 36.000 7.16 0.00 0.00 2.52
125 126 5.184892 ACCTTCCTATGCAAGTTGATTCT 57.815 39.130 7.16 0.00 0.00 2.40
126 127 5.574188 ACCTTCCTATGCAAGTTGATTCTT 58.426 37.500 7.16 0.00 0.00 2.52
127 128 5.416952 ACCTTCCTATGCAAGTTGATTCTTG 59.583 40.000 7.16 2.58 45.09 3.02
128 129 5.416952 CCTTCCTATGCAAGTTGATTCTTGT 59.583 40.000 7.16 0.00 44.41 3.16
129 130 6.071728 CCTTCCTATGCAAGTTGATTCTTGTT 60.072 38.462 7.16 0.69 44.41 2.83
130 131 6.500684 TCCTATGCAAGTTGATTCTTGTTC 57.499 37.500 7.16 0.00 44.41 3.18
131 132 5.415701 TCCTATGCAAGTTGATTCTTGTTCC 59.584 40.000 7.16 0.00 44.41 3.62
132 133 4.525912 ATGCAAGTTGATTCTTGTTCCC 57.474 40.909 7.16 0.00 44.41 3.97
133 134 3.295093 TGCAAGTTGATTCTTGTTCCCA 58.705 40.909 7.16 0.00 44.41 4.37
134 135 3.896888 TGCAAGTTGATTCTTGTTCCCAT 59.103 39.130 7.16 0.00 44.41 4.00
135 136 5.076182 TGCAAGTTGATTCTTGTTCCCATA 58.924 37.500 7.16 0.00 44.41 2.74
136 137 5.538053 TGCAAGTTGATTCTTGTTCCCATAA 59.462 36.000 7.16 0.00 44.41 1.90
137 138 6.095377 GCAAGTTGATTCTTGTTCCCATAAG 58.905 40.000 7.16 0.00 44.41 1.73
138 139 6.294731 GCAAGTTGATTCTTGTTCCCATAAGT 60.295 38.462 7.16 0.00 44.41 2.24
139 140 7.661040 CAAGTTGATTCTTGTTCCCATAAGTT 58.339 34.615 0.00 0.00 39.66 2.66
140 141 7.219484 AGTTGATTCTTGTTCCCATAAGTTG 57.781 36.000 0.00 0.00 0.00 3.16
141 142 6.777580 AGTTGATTCTTGTTCCCATAAGTTGT 59.222 34.615 0.00 0.00 0.00 3.32
142 143 7.287696 AGTTGATTCTTGTTCCCATAAGTTGTT 59.712 33.333 0.00 0.00 0.00 2.83
143 144 7.595819 TGATTCTTGTTCCCATAAGTTGTTT 57.404 32.000 0.00 0.00 0.00 2.83
144 145 7.432869 TGATTCTTGTTCCCATAAGTTGTTTG 58.567 34.615 0.00 0.00 0.00 2.93
145 146 5.195001 TCTTGTTCCCATAAGTTGTTTGC 57.805 39.130 0.00 0.00 0.00 3.68
146 147 4.892934 TCTTGTTCCCATAAGTTGTTTGCT 59.107 37.500 0.00 0.00 0.00 3.91
147 148 4.846779 TGTTCCCATAAGTTGTTTGCTC 57.153 40.909 0.00 0.00 0.00 4.26
148 149 4.211125 TGTTCCCATAAGTTGTTTGCTCA 58.789 39.130 0.00 0.00 0.00 4.26
149 150 4.037446 TGTTCCCATAAGTTGTTTGCTCAC 59.963 41.667 0.00 0.00 0.00 3.51
150 151 3.826524 TCCCATAAGTTGTTTGCTCACA 58.173 40.909 0.00 0.00 0.00 3.58
151 152 4.211125 TCCCATAAGTTGTTTGCTCACAA 58.789 39.130 0.00 0.00 34.15 3.33
152 153 4.646945 TCCCATAAGTTGTTTGCTCACAAA 59.353 37.500 3.21 0.00 43.45 2.83
153 154 5.127845 TCCCATAAGTTGTTTGCTCACAAAA 59.872 36.000 3.21 0.00 46.94 2.44
154 155 5.990996 CCCATAAGTTGTTTGCTCACAAAAT 59.009 36.000 3.21 0.00 46.94 1.82
155 156 6.146021 CCCATAAGTTGTTTGCTCACAAAATC 59.854 38.462 3.21 0.00 46.94 2.17
156 157 6.146021 CCATAAGTTGTTTGCTCACAAAATCC 59.854 38.462 3.21 0.00 46.94 3.01
157 158 4.058721 AGTTGTTTGCTCACAAAATCCC 57.941 40.909 3.21 0.00 46.94 3.85
158 159 3.706086 AGTTGTTTGCTCACAAAATCCCT 59.294 39.130 3.21 0.00 46.94 4.20
159 160 4.892934 AGTTGTTTGCTCACAAAATCCCTA 59.107 37.500 3.21 0.00 46.94 3.53
160 161 5.539955 AGTTGTTTGCTCACAAAATCCCTAT 59.460 36.000 3.21 0.00 46.94 2.57
161 162 5.389859 TGTTTGCTCACAAAATCCCTATG 57.610 39.130 0.00 0.00 46.94 2.23
162 163 4.176271 GTTTGCTCACAAAATCCCTATGC 58.824 43.478 0.00 0.00 46.94 3.14
163 164 3.084536 TGCTCACAAAATCCCTATGCA 57.915 42.857 0.00 0.00 0.00 3.96
164 165 3.018856 TGCTCACAAAATCCCTATGCAG 58.981 45.455 0.00 0.00 0.00 4.41
165 166 2.360165 GCTCACAAAATCCCTATGCAGG 59.640 50.000 0.00 0.00 42.22 4.85
166 167 2.360165 CTCACAAAATCCCTATGCAGGC 59.640 50.000 0.00 0.00 41.08 4.85
167 168 1.410153 CACAAAATCCCTATGCAGGCC 59.590 52.381 0.00 0.00 41.08 5.19
168 169 1.043022 CAAAATCCCTATGCAGGCCC 58.957 55.000 0.00 0.00 41.08 5.80
169 170 0.636101 AAAATCCCTATGCAGGCCCA 59.364 50.000 0.00 0.00 41.08 5.36
170 171 0.106015 AAATCCCTATGCAGGCCCAC 60.106 55.000 0.00 0.00 41.08 4.61
171 172 2.011617 AATCCCTATGCAGGCCCACC 62.012 60.000 0.00 0.00 41.08 4.61
172 173 4.209866 CCCTATGCAGGCCCACCC 62.210 72.222 0.00 0.00 41.08 4.61
174 175 1.770110 CCTATGCAGGCCCACCCTA 60.770 63.158 0.00 0.00 44.09 3.53
175 176 1.352622 CCTATGCAGGCCCACCCTAA 61.353 60.000 0.00 0.00 44.09 2.69
176 177 0.109342 CTATGCAGGCCCACCCTAAG 59.891 60.000 0.00 0.00 44.09 2.18
177 178 1.994885 TATGCAGGCCCACCCTAAGC 61.995 60.000 0.00 0.00 44.09 3.09
178 179 4.822628 GCAGGCCCACCCTAAGCC 62.823 72.222 0.00 0.00 44.09 4.35
181 182 3.429580 GGCCCACCCTAAGCCCAT 61.430 66.667 0.00 0.00 41.00 4.00
182 183 2.082414 GGCCCACCCTAAGCCCATA 61.082 63.158 0.00 0.00 41.00 2.74
183 184 1.150764 GCCCACCCTAAGCCCATAC 59.849 63.158 0.00 0.00 0.00 2.39
184 185 1.641552 GCCCACCCTAAGCCCATACA 61.642 60.000 0.00 0.00 0.00 2.29
185 186 1.149101 CCCACCCTAAGCCCATACAT 58.851 55.000 0.00 0.00 0.00 2.29
186 187 2.344592 CCCACCCTAAGCCCATACATA 58.655 52.381 0.00 0.00 0.00 2.29
187 188 2.919602 CCCACCCTAAGCCCATACATAT 59.080 50.000 0.00 0.00 0.00 1.78
188 189 3.333680 CCCACCCTAAGCCCATACATATT 59.666 47.826 0.00 0.00 0.00 1.28
189 190 4.567747 CCCACCCTAAGCCCATACATATTC 60.568 50.000 0.00 0.00 0.00 1.75
190 191 4.042809 CCACCCTAAGCCCATACATATTCA 59.957 45.833 0.00 0.00 0.00 2.57
191 192 5.281193 CCACCCTAAGCCCATACATATTCAT 60.281 44.000 0.00 0.00 0.00 2.57
192 193 5.882557 CACCCTAAGCCCATACATATTCATC 59.117 44.000 0.00 0.00 0.00 2.92
193 194 5.044846 ACCCTAAGCCCATACATATTCATCC 60.045 44.000 0.00 0.00 0.00 3.51
194 195 5.192522 CCCTAAGCCCATACATATTCATCCT 59.807 44.000 0.00 0.00 0.00 3.24
195 196 6.352516 CCTAAGCCCATACATATTCATCCTC 58.647 44.000 0.00 0.00 0.00 3.71
196 197 5.848286 AAGCCCATACATATTCATCCTCA 57.152 39.130 0.00 0.00 0.00 3.86
197 198 6.398655 AAGCCCATACATATTCATCCTCAT 57.601 37.500 0.00 0.00 0.00 2.90
198 199 5.999044 AGCCCATACATATTCATCCTCATC 58.001 41.667 0.00 0.00 0.00 2.92
199 200 5.104193 AGCCCATACATATTCATCCTCATCC 60.104 44.000 0.00 0.00 0.00 3.51
200 201 5.363101 CCCATACATATTCATCCTCATCCG 58.637 45.833 0.00 0.00 0.00 4.18
201 202 4.813161 CCATACATATTCATCCTCATCCGC 59.187 45.833 0.00 0.00 0.00 5.54
202 203 5.422145 CATACATATTCATCCTCATCCGCA 58.578 41.667 0.00 0.00 0.00 5.69
203 204 4.564782 ACATATTCATCCTCATCCGCAT 57.435 40.909 0.00 0.00 0.00 4.73
204 205 4.511527 ACATATTCATCCTCATCCGCATC 58.488 43.478 0.00 0.00 0.00 3.91
205 206 2.486472 ATTCATCCTCATCCGCATCC 57.514 50.000 0.00 0.00 0.00 3.51
206 207 0.397941 TTCATCCTCATCCGCATCCC 59.602 55.000 0.00 0.00 0.00 3.85
207 208 0.763986 TCATCCTCATCCGCATCCCA 60.764 55.000 0.00 0.00 0.00 4.37
208 209 0.321387 CATCCTCATCCGCATCCCAG 60.321 60.000 0.00 0.00 0.00 4.45
209 210 0.472543 ATCCTCATCCGCATCCCAGA 60.473 55.000 0.00 0.00 0.00 3.86
210 211 1.070445 CCTCATCCGCATCCCAGAC 59.930 63.158 0.00 0.00 0.00 3.51
211 212 1.070445 CTCATCCGCATCCCAGACC 59.930 63.158 0.00 0.00 0.00 3.85
212 213 1.688884 TCATCCGCATCCCAGACCA 60.689 57.895 0.00 0.00 0.00 4.02
213 214 1.224315 CATCCGCATCCCAGACCAA 59.776 57.895 0.00 0.00 0.00 3.67
214 215 0.394216 CATCCGCATCCCAGACCAAA 60.394 55.000 0.00 0.00 0.00 3.28
215 216 0.394352 ATCCGCATCCCAGACCAAAC 60.394 55.000 0.00 0.00 0.00 2.93
216 217 2.046285 CCGCATCCCAGACCAAACC 61.046 63.158 0.00 0.00 0.00 3.27
217 218 2.046285 CGCATCCCAGACCAAACCC 61.046 63.158 0.00 0.00 0.00 4.11
218 219 1.384191 GCATCCCAGACCAAACCCT 59.616 57.895 0.00 0.00 0.00 4.34
219 220 0.623723 GCATCCCAGACCAAACCCTA 59.376 55.000 0.00 0.00 0.00 3.53
220 221 1.408822 GCATCCCAGACCAAACCCTAG 60.409 57.143 0.00 0.00 0.00 3.02
221 222 1.916181 CATCCCAGACCAAACCCTAGT 59.084 52.381 0.00 0.00 0.00 2.57
222 223 1.652947 TCCCAGACCAAACCCTAGTC 58.347 55.000 0.00 0.00 0.00 2.59
223 224 1.132657 TCCCAGACCAAACCCTAGTCA 60.133 52.381 0.00 0.00 32.82 3.41
224 225 1.003233 CCCAGACCAAACCCTAGTCAC 59.997 57.143 0.00 0.00 32.82 3.67
225 226 1.978580 CCAGACCAAACCCTAGTCACT 59.021 52.381 0.00 0.00 32.82 3.41
226 227 2.028020 CCAGACCAAACCCTAGTCACTC 60.028 54.545 0.00 0.00 32.82 3.51
227 228 2.028020 CAGACCAAACCCTAGTCACTCC 60.028 54.545 0.00 0.00 32.82 3.85
228 229 1.975680 GACCAAACCCTAGTCACTCCA 59.024 52.381 0.00 0.00 0.00 3.86
229 230 2.572104 GACCAAACCCTAGTCACTCCAT 59.428 50.000 0.00 0.00 0.00 3.41
230 231 2.986728 ACCAAACCCTAGTCACTCCATT 59.013 45.455 0.00 0.00 0.00 3.16
231 232 3.009143 ACCAAACCCTAGTCACTCCATTC 59.991 47.826 0.00 0.00 0.00 2.67
232 233 3.610911 CAAACCCTAGTCACTCCATTCC 58.389 50.000 0.00 0.00 0.00 3.01
233 234 1.486211 ACCCTAGTCACTCCATTCCG 58.514 55.000 0.00 0.00 0.00 4.30
234 235 1.273098 ACCCTAGTCACTCCATTCCGT 60.273 52.381 0.00 0.00 0.00 4.69
235 236 1.409427 CCCTAGTCACTCCATTCCGTC 59.591 57.143 0.00 0.00 0.00 4.79
236 237 1.409427 CCTAGTCACTCCATTCCGTCC 59.591 57.143 0.00 0.00 0.00 4.79
237 238 2.100197 CTAGTCACTCCATTCCGTCCA 58.900 52.381 0.00 0.00 0.00 4.02
238 239 0.608640 AGTCACTCCATTCCGTCCAC 59.391 55.000 0.00 0.00 0.00 4.02
239 240 0.320374 GTCACTCCATTCCGTCCACA 59.680 55.000 0.00 0.00 0.00 4.17
240 241 1.052617 TCACTCCATTCCGTCCACAA 58.947 50.000 0.00 0.00 0.00 3.33
241 242 1.418264 TCACTCCATTCCGTCCACAAA 59.582 47.619 0.00 0.00 0.00 2.83
242 243 1.535462 CACTCCATTCCGTCCACAAAC 59.465 52.381 0.00 0.00 0.00 2.93
243 244 1.420138 ACTCCATTCCGTCCACAAACT 59.580 47.619 0.00 0.00 0.00 2.66
244 245 2.076863 CTCCATTCCGTCCACAAACTC 58.923 52.381 0.00 0.00 0.00 3.01
245 246 1.165270 CCATTCCGTCCACAAACTCC 58.835 55.000 0.00 0.00 0.00 3.85
246 247 0.796312 CATTCCGTCCACAAACTCCG 59.204 55.000 0.00 0.00 0.00 4.63
247 248 0.395312 ATTCCGTCCACAAACTCCGT 59.605 50.000 0.00 0.00 0.00 4.69
248 249 0.178533 TTCCGTCCACAAACTCCGTT 59.821 50.000 0.00 0.00 0.00 4.44
249 250 0.249573 TCCGTCCACAAACTCCGTTC 60.250 55.000 0.00 0.00 0.00 3.95
250 251 1.226030 CCGTCCACAAACTCCGTTCC 61.226 60.000 0.00 0.00 0.00 3.62
251 252 1.554042 CGTCCACAAACTCCGTTCCG 61.554 60.000 0.00 0.00 0.00 4.30
252 253 0.249573 GTCCACAAACTCCGTTCCGA 60.250 55.000 0.00 0.00 0.00 4.55
253 254 0.249573 TCCACAAACTCCGTTCCGAC 60.250 55.000 0.00 0.00 0.00 4.79
254 255 0.531090 CCACAAACTCCGTTCCGACA 60.531 55.000 0.00 0.00 0.00 4.35
255 256 1.292061 CACAAACTCCGTTCCGACAA 58.708 50.000 0.00 0.00 0.00 3.18
256 257 1.871039 CACAAACTCCGTTCCGACAAT 59.129 47.619 0.00 0.00 0.00 2.71
257 258 2.096417 CACAAACTCCGTTCCGACAATC 60.096 50.000 0.00 0.00 0.00 2.67
258 259 2.224209 ACAAACTCCGTTCCGACAATCT 60.224 45.455 0.00 0.00 0.00 2.40
259 260 2.365408 AACTCCGTTCCGACAATCTC 57.635 50.000 0.00 0.00 0.00 2.75
260 261 0.531200 ACTCCGTTCCGACAATCTCC 59.469 55.000 0.00 0.00 0.00 3.71
261 262 0.530744 CTCCGTTCCGACAATCTCCA 59.469 55.000 0.00 0.00 0.00 3.86
262 263 0.530744 TCCGTTCCGACAATCTCCAG 59.469 55.000 0.00 0.00 0.00 3.86
263 264 1.084370 CCGTTCCGACAATCTCCAGC 61.084 60.000 0.00 0.00 0.00 4.85
264 265 1.084370 CGTTCCGACAATCTCCAGCC 61.084 60.000 0.00 0.00 0.00 4.85
265 266 0.250513 GTTCCGACAATCTCCAGCCT 59.749 55.000 0.00 0.00 0.00 4.58
266 267 0.984230 TTCCGACAATCTCCAGCCTT 59.016 50.000 0.00 0.00 0.00 4.35
270 271 1.472376 CGACAATCTCCAGCCTTCTCC 60.472 57.143 0.00 0.00 0.00 3.71
287 288 2.677003 CCGGCATGACGACCAACAC 61.677 63.158 25.84 0.00 35.47 3.32
293 294 0.035439 ATGACGACCAACACATCCCC 60.035 55.000 0.00 0.00 0.00 4.81
296 297 2.033448 GACCAACACATCCCCGCA 59.967 61.111 0.00 0.00 0.00 5.69
347 348 3.929417 ATAGCTCGTCTCGTATATCGC 57.071 47.619 0.00 0.00 39.67 4.58
357 358 5.562998 CGTCTCGTATATCGCGTCTATTTTT 59.437 40.000 5.77 0.00 39.67 1.94
363 364 8.925700 TCGTATATCGCGTCTATTTTTAGTCTA 58.074 33.333 5.77 0.00 39.67 2.59
441 442 7.448469 AGGAAATATCGATGTTTATCCAAAGGG 59.552 37.037 21.01 0.00 0.00 3.95
516 517 9.314321 ACATAATAAAGTATACATAGGCGCATC 57.686 33.333 10.83 0.00 0.00 3.91
517 518 8.765219 CATAATAAAGTATACATAGGCGCATCC 58.235 37.037 10.83 0.00 0.00 3.51
573 574 5.861222 ATATATGTGTGTGTGTGTGTGTG 57.139 39.130 0.00 0.00 0.00 3.82
574 575 1.819928 ATGTGTGTGTGTGTGTGTGT 58.180 45.000 0.00 0.00 0.00 3.72
575 576 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
576 577 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
577 578 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
578 579 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
579 580 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
580 581 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
581 582 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
582 583 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
583 584 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
584 585 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
585 586 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
586 587 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
587 588 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
588 589 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
589 590 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
590 591 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
591 592 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
592 593 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
593 594 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
594 595 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
595 596 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
596 597 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
597 598 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
598 599 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
599 600 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
600 601 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
601 602 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
602 603 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
603 604 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
604 605 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
605 606 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
606 607 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
607 608 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
608 609 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
609 610 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
610 611 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
611 612 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
612 613 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
613 614 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
614 615 0.454285 GTGTGTGTGTGTGTGTGTGC 60.454 55.000 0.00 0.00 0.00 4.57
615 616 1.225991 GTGTGTGTGTGTGTGTGCG 60.226 57.895 0.00 0.00 0.00 5.34
616 617 1.669437 TGTGTGTGTGTGTGTGCGT 60.669 52.632 0.00 0.00 0.00 5.24
617 618 1.225991 GTGTGTGTGTGTGTGCGTG 60.226 57.895 0.00 0.00 0.00 5.34
618 619 1.669437 TGTGTGTGTGTGTGCGTGT 60.669 52.632 0.00 0.00 0.00 4.49
619 620 1.225991 GTGTGTGTGTGTGCGTGTG 60.226 57.895 0.00 0.00 0.00 3.82
620 621 1.669437 TGTGTGTGTGTGCGTGTGT 60.669 52.632 0.00 0.00 0.00 3.72
621 622 1.225991 GTGTGTGTGTGCGTGTGTG 60.226 57.895 0.00 0.00 0.00 3.82
622 623 1.669437 TGTGTGTGTGCGTGTGTGT 60.669 52.632 0.00 0.00 0.00 3.72
623 624 1.225991 GTGTGTGTGCGTGTGTGTG 60.226 57.895 0.00 0.00 0.00 3.82
624 625 1.669437 TGTGTGTGCGTGTGTGTGT 60.669 52.632 0.00 0.00 0.00 3.72
625 626 1.225991 GTGTGTGCGTGTGTGTGTG 60.226 57.895 0.00 0.00 0.00 3.82
626 627 1.669437 TGTGTGCGTGTGTGTGTGT 60.669 52.632 0.00 0.00 0.00 3.72
627 628 1.225991 GTGTGCGTGTGTGTGTGTG 60.226 57.895 0.00 0.00 0.00 3.82
628 629 1.669437 TGTGCGTGTGTGTGTGTGT 60.669 52.632 0.00 0.00 0.00 3.72
629 630 1.225991 GTGCGTGTGTGTGTGTGTG 60.226 57.895 0.00 0.00 0.00 3.82
630 631 1.669437 TGCGTGTGTGTGTGTGTGT 60.669 52.632 0.00 0.00 0.00 3.72
631 632 1.225991 GCGTGTGTGTGTGTGTGTG 60.226 57.895 0.00 0.00 0.00 3.82
642 643 5.039984 GTGTGTGTGTGTGCAATGATAAAA 58.960 37.500 0.00 0.00 0.00 1.52
738 742 0.963962 CTTGGGCACAGCTGTTGATT 59.036 50.000 18.94 0.00 0.00 2.57
957 983 3.059733 CCACGCTTACTACTAGCTACTCG 60.060 52.174 0.00 0.00 36.49 4.18
973 999 5.642063 AGCTACTCGATCTAGCTAGTGATTC 59.358 44.000 20.10 11.76 44.24 2.52
984 1010 3.327757 AGCTAGTGATTCTTGTGGTTCCA 59.672 43.478 0.00 0.00 0.00 3.53
1390 1416 0.391263 CTACTTCCCCAAGACCACGC 60.391 60.000 0.00 0.00 33.34 5.34
1446 1472 3.267860 GCCGAGCTCCGCAAGATG 61.268 66.667 20.25 0.00 43.02 2.90
1607 1642 1.375908 GTTCCACAGGCAGATGCGA 60.376 57.895 0.00 0.00 43.26 5.10
1608 1643 1.375908 TTCCACAGGCAGATGCGAC 60.376 57.895 0.00 0.00 43.26 5.19
1609 1644 1.830587 TTCCACAGGCAGATGCGACT 61.831 55.000 0.00 0.00 43.26 4.18
1610 1645 1.376424 CCACAGGCAGATGCGACTT 60.376 57.895 0.00 0.00 43.26 3.01
1611 1646 1.642037 CCACAGGCAGATGCGACTTG 61.642 60.000 0.00 0.00 43.26 3.16
1612 1647 2.037136 ACAGGCAGATGCGACTTGC 61.037 57.895 0.00 0.00 46.70 4.01
1695 1745 4.427394 GAGCGCAAGATCGTGGAT 57.573 55.556 11.47 0.00 45.81 3.41
1723 1773 1.741770 GAGACCGTGACCATGCACC 60.742 63.158 0.00 0.00 35.37 5.01
1753 1803 3.182341 ACGTAGTACACAACTGGCAAA 57.818 42.857 0.38 0.00 41.94 3.68
1757 1807 2.028876 AGTACACAACTGGCAAAACCC 58.971 47.619 0.00 0.00 36.93 4.11
1901 1953 0.447801 CAACAGCCTTACATGCCGTC 59.552 55.000 0.00 0.00 0.00 4.79
1904 1956 0.464373 CAGCCTTACATGCCGTCCAT 60.464 55.000 0.00 0.00 33.39 3.41
1905 1957 0.255890 AGCCTTACATGCCGTCCATT 59.744 50.000 0.00 0.00 29.71 3.16
2002 2061 3.579302 CCCAAGTGCCCTGACCCA 61.579 66.667 0.00 0.00 0.00 4.51
2111 2170 4.256180 GCGGGCCAGATAGGTGGG 62.256 72.222 7.23 0.00 40.61 4.61
2112 2171 2.768344 CGGGCCAGATAGGTGGGT 60.768 66.667 4.39 0.00 40.61 4.51
2113 2172 1.458777 CGGGCCAGATAGGTGGGTA 60.459 63.158 4.39 0.00 40.61 3.69
2114 2173 1.755393 CGGGCCAGATAGGTGGGTAC 61.755 65.000 4.39 0.00 40.61 3.34
2148 2207 2.677172 CCGGGCCGGCCTTAAAAA 60.677 61.111 42.70 0.00 41.17 1.94
2149 2208 2.706834 CCGGGCCGGCCTTAAAAAG 61.707 63.158 42.70 23.72 41.17 2.27
2150 2209 2.577059 GGGCCGGCCTTAAAAAGC 59.423 61.111 42.70 21.56 36.10 3.51
2151 2210 2.577059 GGCCGGCCTTAAAAAGCC 59.423 61.111 38.76 7.31 46.17 4.35
2156 2215 1.589630 GGCCTTAAAAAGCCCACGG 59.410 57.895 0.00 0.00 43.76 4.94
2172 2231 3.062466 GGCAGAAAACCGAGGCCC 61.062 66.667 0.00 0.00 38.70 5.80
2173 2232 2.282180 GCAGAAAACCGAGGCCCA 60.282 61.111 0.00 0.00 0.00 5.36
2174 2233 2.335712 GCAGAAAACCGAGGCCCAG 61.336 63.158 0.00 0.00 0.00 4.45
2175 2234 1.675641 CAGAAAACCGAGGCCCAGG 60.676 63.158 12.20 12.20 0.00 4.45
2176 2235 3.062466 GAAAACCGAGGCCCAGGC 61.062 66.667 13.56 0.00 41.06 4.85
2193 2252 4.431524 CCCTCCCAGGCCCTACCA 62.432 72.222 0.00 0.00 43.14 3.25
2194 2253 2.039405 CCTCCCAGGCCCTACCAT 60.039 66.667 0.00 0.00 43.14 3.55
2195 2254 2.150051 CCTCCCAGGCCCTACCATC 61.150 68.421 0.00 0.00 43.14 3.51
2196 2255 1.384502 CTCCCAGGCCCTACCATCA 60.385 63.158 0.00 0.00 43.14 3.07
2197 2256 1.384502 TCCCAGGCCCTACCATCAG 60.385 63.158 0.00 0.00 43.14 2.90
2198 2257 2.455565 CCCAGGCCCTACCATCAGG 61.456 68.421 0.00 0.00 43.14 3.86
2199 2258 2.512896 CAGGCCCTACCATCAGGC 59.487 66.667 0.00 0.00 46.37 4.85
2202 2261 4.313523 GCCCTACCATCAGGCCTA 57.686 61.111 3.98 0.00 41.00 3.93
2203 2262 1.755384 GCCCTACCATCAGGCCTAC 59.245 63.158 3.98 0.00 41.00 3.18
2204 2263 0.764752 GCCCTACCATCAGGCCTACT 60.765 60.000 3.98 0.00 41.00 2.57
2205 2264 1.807814 CCCTACCATCAGGCCTACTT 58.192 55.000 3.98 0.00 39.06 2.24
2206 2265 2.127708 CCCTACCATCAGGCCTACTTT 58.872 52.381 3.98 0.00 39.06 2.66
2207 2266 2.509964 CCCTACCATCAGGCCTACTTTT 59.490 50.000 3.98 0.00 39.06 2.27
2208 2267 3.433740 CCCTACCATCAGGCCTACTTTTC 60.434 52.174 3.98 0.00 39.06 2.29
2209 2268 3.199946 CCTACCATCAGGCCTACTTTTCA 59.800 47.826 3.98 0.00 39.06 2.69
2210 2269 3.806949 ACCATCAGGCCTACTTTTCAA 57.193 42.857 3.98 0.00 39.06 2.69
2211 2270 3.690460 ACCATCAGGCCTACTTTTCAAG 58.310 45.455 3.98 0.00 39.06 3.02
2212 2271 3.074538 ACCATCAGGCCTACTTTTCAAGT 59.925 43.478 3.98 0.00 41.40 3.16
2213 2272 3.691609 CCATCAGGCCTACTTTTCAAGTC 59.308 47.826 3.98 0.00 41.77 3.01
2214 2273 3.418684 TCAGGCCTACTTTTCAAGTCC 57.581 47.619 3.98 0.00 41.77 3.85
2215 2274 2.708861 TCAGGCCTACTTTTCAAGTCCA 59.291 45.455 3.98 0.00 41.77 4.02
2216 2275 3.137544 TCAGGCCTACTTTTCAAGTCCAA 59.862 43.478 3.98 0.00 41.77 3.53
2217 2276 3.503748 CAGGCCTACTTTTCAAGTCCAAG 59.496 47.826 3.98 0.00 41.77 3.61
2218 2277 2.229062 GGCCTACTTTTCAAGTCCAAGC 59.771 50.000 0.00 0.00 41.77 4.01
2219 2278 2.229062 GCCTACTTTTCAAGTCCAAGCC 59.771 50.000 0.00 0.00 41.77 4.35
2220 2279 2.484264 CCTACTTTTCAAGTCCAAGCCG 59.516 50.000 0.00 0.00 41.77 5.52
2221 2280 1.318576 ACTTTTCAAGTCCAAGCCGG 58.681 50.000 0.00 0.00 37.02 6.13
2222 2281 0.598065 CTTTTCAAGTCCAAGCCGGG 59.402 55.000 2.18 0.00 34.36 5.73
2223 2282 1.460273 TTTTCAAGTCCAAGCCGGGC 61.460 55.000 12.11 12.11 41.10 6.13
2224 2283 3.860930 TTCAAGTCCAAGCCGGGCC 62.861 63.158 17.02 0.00 42.15 5.80
2233 2292 4.815973 AGCCGGGCCCATCTGGTA 62.816 66.667 24.92 0.00 35.63 3.25
2234 2293 3.804329 GCCGGGCCCATCTGGTAA 61.804 66.667 24.92 0.00 35.63 2.85
2235 2294 3.003230 CCGGGCCCATCTGGTAAA 58.997 61.111 24.92 0.00 36.04 2.01
2236 2295 1.304952 CCGGGCCCATCTGGTAAAA 59.695 57.895 24.92 0.00 36.04 1.52
2237 2296 0.323908 CCGGGCCCATCTGGTAAAAA 60.324 55.000 24.92 0.00 36.04 1.94
2255 2314 4.955811 AAAAACCCTGAAAAGCCCTTAG 57.044 40.909 0.00 0.00 0.00 2.18
2256 2315 2.604912 AACCCTGAAAAGCCCTTAGG 57.395 50.000 0.00 0.00 0.00 2.69
2287 2346 3.087906 GGCCGGGCCTCTTCCTTA 61.088 66.667 30.86 0.00 46.69 2.69
2288 2347 2.676265 GGCCGGGCCTCTTCCTTAA 61.676 63.158 30.86 0.00 46.69 1.85
2289 2348 1.301954 GCCGGGCCTCTTCCTTAAA 59.698 57.895 8.12 0.00 0.00 1.52
2290 2349 0.323087 GCCGGGCCTCTTCCTTAAAA 60.323 55.000 8.12 0.00 0.00 1.52
2291 2350 1.685180 GCCGGGCCTCTTCCTTAAAAT 60.685 52.381 8.12 0.00 0.00 1.82
2292 2351 2.024414 CCGGGCCTCTTCCTTAAAATG 58.976 52.381 0.84 0.00 0.00 2.32
2293 2352 1.405463 CGGGCCTCTTCCTTAAAATGC 59.595 52.381 0.84 0.00 0.00 3.56
2294 2353 1.757118 GGGCCTCTTCCTTAAAATGCC 59.243 52.381 0.84 0.00 36.92 4.40
2295 2354 2.456577 GGCCTCTTCCTTAAAATGCCA 58.543 47.619 0.00 0.00 37.58 4.92
2296 2355 2.831526 GGCCTCTTCCTTAAAATGCCAA 59.168 45.455 0.00 0.00 37.58 4.52
2297 2356 3.452264 GGCCTCTTCCTTAAAATGCCAAT 59.548 43.478 0.00 0.00 37.58 3.16
2298 2357 4.649218 GGCCTCTTCCTTAAAATGCCAATA 59.351 41.667 0.00 0.00 37.58 1.90
2299 2358 5.305386 GGCCTCTTCCTTAAAATGCCAATAT 59.695 40.000 0.00 0.00 37.58 1.28
2300 2359 6.218746 GCCTCTTCCTTAAAATGCCAATATG 58.781 40.000 0.00 0.00 0.00 1.78
2301 2360 6.218746 CCTCTTCCTTAAAATGCCAATATGC 58.781 40.000 0.00 0.00 0.00 3.14
2302 2361 6.160576 TCTTCCTTAAAATGCCAATATGCC 57.839 37.500 0.00 0.00 0.00 4.40
2303 2362 5.660417 TCTTCCTTAAAATGCCAATATGCCA 59.340 36.000 0.00 0.00 0.00 4.92
2304 2363 5.946942 TCCTTAAAATGCCAATATGCCAA 57.053 34.783 0.00 0.00 0.00 4.52
2305 2364 5.916318 TCCTTAAAATGCCAATATGCCAAG 58.084 37.500 0.00 0.00 0.00 3.61
2306 2365 4.512571 CCTTAAAATGCCAATATGCCAAGC 59.487 41.667 0.00 0.00 0.00 4.01
2307 2366 2.625695 AAATGCCAATATGCCAAGCC 57.374 45.000 0.00 0.00 0.00 4.35
2308 2367 0.760572 AATGCCAATATGCCAAGCCC 59.239 50.000 0.00 0.00 0.00 5.19
2309 2368 0.398806 ATGCCAATATGCCAAGCCCA 60.399 50.000 0.00 0.00 0.00 5.36
2310 2369 0.616964 TGCCAATATGCCAAGCCCAA 60.617 50.000 0.00 0.00 0.00 4.12
2311 2370 0.105408 GCCAATATGCCAAGCCCAAG 59.895 55.000 0.00 0.00 0.00 3.61
2312 2371 0.105408 CCAATATGCCAAGCCCAAGC 59.895 55.000 0.00 0.00 40.32 4.01
2313 2372 0.105408 CAATATGCCAAGCCCAAGCC 59.895 55.000 0.00 0.00 41.25 4.35
2314 2373 1.050421 AATATGCCAAGCCCAAGCCC 61.050 55.000 0.00 0.00 41.25 5.19
2315 2374 2.241043 ATATGCCAAGCCCAAGCCCA 62.241 55.000 0.00 0.00 41.25 5.36
2316 2375 2.241043 TATGCCAAGCCCAAGCCCAT 62.241 55.000 0.00 0.00 41.25 4.00
2317 2376 3.464494 GCCAAGCCCAAGCCCATC 61.464 66.667 0.00 0.00 41.25 3.51
2318 2377 2.761213 CCAAGCCCAAGCCCATCC 60.761 66.667 0.00 0.00 41.25 3.51
2319 2378 2.037687 CAAGCCCAAGCCCATCCA 59.962 61.111 0.00 0.00 41.25 3.41
2320 2379 2.056223 CAAGCCCAAGCCCATCCAG 61.056 63.158 0.00 0.00 41.25 3.86
2321 2380 3.307089 AAGCCCAAGCCCATCCAGG 62.307 63.158 0.00 0.00 41.25 4.45
2329 2388 4.517934 CCCATCCAGGCCCTGCTG 62.518 72.222 4.81 4.88 35.39 4.41
2330 2389 4.517934 CCATCCAGGCCCTGCTGG 62.518 72.222 14.11 14.11 41.85 4.85
2331 2390 3.736224 CATCCAGGCCCTGCTGGT 61.736 66.667 4.81 0.00 41.28 4.00
2332 2391 3.736224 ATCCAGGCCCTGCTGGTG 61.736 66.667 4.81 0.37 41.28 4.17
2339 2398 3.970410 CCCTGCTGGTGGGCTCAA 61.970 66.667 9.00 0.00 37.99 3.02
2340 2399 2.115910 CCTGCTGGTGGGCTCAAA 59.884 61.111 0.51 0.00 0.00 2.69
2341 2400 1.531365 CCTGCTGGTGGGCTCAAAA 60.531 57.895 0.51 0.00 0.00 2.44
2342 2401 1.662044 CTGCTGGTGGGCTCAAAAC 59.338 57.895 0.00 0.00 0.00 2.43
2343 2402 0.825010 CTGCTGGTGGGCTCAAAACT 60.825 55.000 0.00 0.00 0.00 2.66
2344 2403 0.823356 TGCTGGTGGGCTCAAAACTC 60.823 55.000 0.00 0.00 0.00 3.01
2345 2404 0.823356 GCTGGTGGGCTCAAAACTCA 60.823 55.000 0.00 0.00 0.00 3.41
2346 2405 1.242076 CTGGTGGGCTCAAAACTCAG 58.758 55.000 0.00 0.00 0.00 3.35
2347 2406 0.178992 TGGTGGGCTCAAAACTCAGG 60.179 55.000 0.00 0.00 0.00 3.86
2348 2407 1.527433 GGTGGGCTCAAAACTCAGGC 61.527 60.000 0.00 0.00 34.44 4.85
2350 2409 3.686760 GGCTCAAAACTCAGGCCC 58.313 61.111 0.00 0.00 37.12 5.80
2351 2410 1.228552 GGCTCAAAACTCAGGCCCA 60.229 57.895 0.00 0.00 37.12 5.36
2352 2411 0.827507 GGCTCAAAACTCAGGCCCAA 60.828 55.000 0.00 0.00 37.12 4.12
2353 2412 0.600057 GCTCAAAACTCAGGCCCAAG 59.400 55.000 0.00 0.00 0.00 3.61
2354 2413 0.600057 CTCAAAACTCAGGCCCAAGC 59.400 55.000 0.00 0.00 38.76 4.01
2398 2457 2.278332 GCCTAGGCCCTGGATTTTAG 57.722 55.000 24.19 0.33 34.56 1.85
2399 2458 1.202940 GCCTAGGCCCTGGATTTTAGG 60.203 57.143 24.19 10.45 34.56 2.69
2404 2463 4.579127 CCTGGATTTTAGGGCCGG 57.421 61.111 0.00 0.00 0.00 6.13
2405 2464 1.152756 CCTGGATTTTAGGGCCGGG 60.153 63.158 2.18 0.00 41.55 5.73
2406 2465 1.828224 CTGGATTTTAGGGCCGGGC 60.828 63.158 22.00 22.00 0.00 6.13
2423 2482 2.765807 CCGGAGATGGCCAGGACT 60.766 66.667 13.05 10.74 0.00 3.85
2424 2483 1.457643 CCGGAGATGGCCAGGACTA 60.458 63.158 13.05 0.00 0.00 2.59
2433 2492 0.619543 GGCCAGGACTAGTTGGGGTA 60.620 60.000 14.19 0.00 34.96 3.69
2461 2520 1.675714 GGGCACTCATCGTCAACATCA 60.676 52.381 0.00 0.00 0.00 3.07
2497 2556 3.883744 CTCACCAACGGCCGCTTCT 62.884 63.158 28.58 1.31 0.00 2.85
2568 2627 3.161450 GCCTACCATCTCGGCCCA 61.161 66.667 0.00 0.00 39.03 5.36
2610 2669 4.101448 CTCAGGGAAGCCGTGGGG 62.101 72.222 6.34 0.00 39.55 4.96
2611 2670 4.974438 TCAGGGAAGCCGTGGGGT 62.974 66.667 6.34 0.00 39.55 4.95
2890 2953 8.806146 TATATGATCATATATCCCATGTGGACG 58.194 37.037 25.21 0.00 39.25 4.79
2928 2991 5.474876 AGACATCTGTGGAAGGTGAAAATTC 59.525 40.000 0.00 0.00 39.66 2.17
3011 3075 7.254556 CCTCTTGTTGATTTCCTTTTCAAAAGC 60.255 37.037 4.15 0.00 33.90 3.51
3035 3099 0.788391 GCGGCGATAAATTCCTACGG 59.212 55.000 12.98 0.00 0.00 4.02
3111 3175 1.043816 AGAATGGATGGATCGCGTCT 58.956 50.000 5.77 0.00 0.00 4.18
3133 3197 5.544176 TCTGGTCAGGAGAAGAAAATACAGT 59.456 40.000 0.00 0.00 0.00 3.55
3141 3205 6.486993 AGGAGAAGAAAATACAGTGGTTTCAC 59.513 38.462 14.75 9.98 43.93 3.18
3232 3296 7.335627 TGTTGATTTGGTCTAGTAGTATTGGG 58.664 38.462 0.00 0.00 0.00 4.12
3288 3352 6.034591 CGGCTCCTATTATTTAGATGTACCG 58.965 44.000 0.00 0.00 0.00 4.02
3395 3459 6.368243 GCACACATATTATGATGACTCCTGAG 59.632 42.308 10.62 0.00 0.00 3.35
3411 3475 0.968405 TGAGCATTTGTTGGAAGGCC 59.032 50.000 0.00 0.00 37.03 5.19
3438 3502 2.635915 AGTTGGACCGAAACCATACAGA 59.364 45.455 0.00 0.00 37.26 3.41
3599 3663 3.496160 GCTGGAACTAGAAAGGTTGGACA 60.496 47.826 0.00 0.00 0.00 4.02
3602 3666 5.070001 TGGAACTAGAAAGGTTGGACAATG 58.930 41.667 0.00 0.00 0.00 2.82
3603 3667 5.163141 TGGAACTAGAAAGGTTGGACAATGA 60.163 40.000 0.00 0.00 0.00 2.57
3604 3668 5.946377 GGAACTAGAAAGGTTGGACAATGAT 59.054 40.000 0.00 0.00 0.00 2.45
3605 3669 6.094186 GGAACTAGAAAGGTTGGACAATGATC 59.906 42.308 0.00 0.00 0.00 2.92
3606 3670 5.501156 ACTAGAAAGGTTGGACAATGATCC 58.499 41.667 0.00 0.00 39.45 3.36
3622 3686 2.029380 TGATCCAATGCGTATAGGTCCG 60.029 50.000 0.00 0.00 0.00 4.79
3651 3715 7.439955 TCATGCAGAGTTAAAAGTTAACGAGAA 59.560 33.333 0.00 0.00 33.00 2.87
3668 3732 4.272748 ACGAGAAGCTTGTTGAACTTTACC 59.727 41.667 17.37 0.00 0.00 2.85
3711 3775 2.740981 GGCAGCATTCGAGGATCTATTG 59.259 50.000 0.00 0.00 0.00 1.90
3759 3823 4.191544 TGATTTTTCCATCTCCGTGCTAG 58.808 43.478 0.00 0.00 0.00 3.42
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 9.753674 TGTTCCTTCCTCATAATAATTTTCAGT 57.246 29.630 0.00 0.00 0.00 3.41
15 16 8.762645 CCTATAAGCATATGTTCCTTCCTCATA 58.237 37.037 4.29 0.00 0.00 2.15
16 17 7.459125 TCCTATAAGCATATGTTCCTTCCTCAT 59.541 37.037 4.29 0.00 0.00 2.90
17 18 6.787458 TCCTATAAGCATATGTTCCTTCCTCA 59.213 38.462 4.29 0.00 0.00 3.86
18 19 7.246171 TCCTATAAGCATATGTTCCTTCCTC 57.754 40.000 4.29 0.00 0.00 3.71
19 20 7.633018 TTCCTATAAGCATATGTTCCTTCCT 57.367 36.000 4.29 0.00 0.00 3.36
20 21 8.734386 CAATTCCTATAAGCATATGTTCCTTCC 58.266 37.037 4.29 0.00 0.00 3.46
21 22 8.239998 GCAATTCCTATAAGCATATGTTCCTTC 58.760 37.037 4.29 0.00 0.00 3.46
22 23 7.725397 TGCAATTCCTATAAGCATATGTTCCTT 59.275 33.333 4.29 2.17 0.00 3.36
23 24 7.233632 TGCAATTCCTATAAGCATATGTTCCT 58.766 34.615 4.29 0.00 0.00 3.36
24 25 7.452880 TGCAATTCCTATAAGCATATGTTCC 57.547 36.000 4.29 0.00 0.00 3.62
39 40 9.205513 AGGAAACTTGATATTATTGCAATTCCT 57.794 29.630 18.75 15.84 36.73 3.36
40 41 9.468532 GAGGAAACTTGATATTATTGCAATTCC 57.531 33.333 18.75 13.84 44.43 3.01
43 44 9.638176 AGAGAGGAAACTTGATATTATTGCAAT 57.362 29.630 17.56 17.56 44.43 3.56
49 50 8.325046 GCCCATAGAGAGGAAACTTGATATTAT 58.675 37.037 0.00 0.00 44.43 1.28
50 51 7.514127 AGCCCATAGAGAGGAAACTTGATATTA 59.486 37.037 0.00 0.00 44.43 0.98
51 52 6.331307 AGCCCATAGAGAGGAAACTTGATATT 59.669 38.462 0.00 0.00 44.43 1.28
52 53 5.848921 AGCCCATAGAGAGGAAACTTGATAT 59.151 40.000 0.00 0.00 44.43 1.63
53 54 5.219739 AGCCCATAGAGAGGAAACTTGATA 58.780 41.667 0.00 0.00 44.43 2.15
54 55 4.043596 AGCCCATAGAGAGGAAACTTGAT 58.956 43.478 0.00 0.00 44.43 2.57
55 56 3.454858 AGCCCATAGAGAGGAAACTTGA 58.545 45.455 0.00 0.00 44.43 3.02
56 57 3.922171 AGCCCATAGAGAGGAAACTTG 57.078 47.619 0.00 0.00 44.43 3.16
57 58 6.012421 ACTTTAAGCCCATAGAGAGGAAACTT 60.012 38.462 0.00 0.00 44.43 2.66
59 60 5.746284 ACTTTAAGCCCATAGAGAGGAAAC 58.254 41.667 0.00 0.00 0.00 2.78
60 61 6.388619 AACTTTAAGCCCATAGAGAGGAAA 57.611 37.500 0.00 0.00 0.00 3.13
61 62 6.388619 AAACTTTAAGCCCATAGAGAGGAA 57.611 37.500 0.00 0.00 0.00 3.36
62 63 6.012858 TCAAAACTTTAAGCCCATAGAGAGGA 60.013 38.462 0.00 0.00 0.00 3.71
63 64 6.180472 TCAAAACTTTAAGCCCATAGAGAGG 58.820 40.000 0.00 0.00 0.00 3.69
64 65 7.391833 ACTTCAAAACTTTAAGCCCATAGAGAG 59.608 37.037 0.00 0.00 0.00 3.20
65 66 7.231467 ACTTCAAAACTTTAAGCCCATAGAGA 58.769 34.615 0.00 0.00 0.00 3.10
66 67 7.454260 ACTTCAAAACTTTAAGCCCATAGAG 57.546 36.000 0.00 0.00 0.00 2.43
67 68 7.833285 AACTTCAAAACTTTAAGCCCATAGA 57.167 32.000 0.00 0.00 0.00 1.98
68 69 9.573133 CATAACTTCAAAACTTTAAGCCCATAG 57.427 33.333 0.00 0.00 0.00 2.23
69 70 8.032451 GCATAACTTCAAAACTTTAAGCCCATA 58.968 33.333 0.00 0.00 0.00 2.74
70 71 6.873605 GCATAACTTCAAAACTTTAAGCCCAT 59.126 34.615 0.00 0.00 0.00 4.00
71 72 6.041523 AGCATAACTTCAAAACTTTAAGCCCA 59.958 34.615 0.00 0.00 0.00 5.36
72 73 6.455647 AGCATAACTTCAAAACTTTAAGCCC 58.544 36.000 0.00 0.00 0.00 5.19
73 74 7.438160 ACAAGCATAACTTCAAAACTTTAAGCC 59.562 33.333 0.00 0.00 36.04 4.35
74 75 8.352752 ACAAGCATAACTTCAAAACTTTAAGC 57.647 30.769 0.00 0.00 36.04 3.09
79 80 9.093970 GGTAAAACAAGCATAACTTCAAAACTT 57.906 29.630 0.00 0.00 36.04 2.66
80 81 8.474831 AGGTAAAACAAGCATAACTTCAAAACT 58.525 29.630 0.00 0.00 36.04 2.66
81 82 8.642908 AGGTAAAACAAGCATAACTTCAAAAC 57.357 30.769 0.00 0.00 36.04 2.43
82 83 9.308318 GAAGGTAAAACAAGCATAACTTCAAAA 57.692 29.630 5.24 0.00 41.09 2.44
83 84 7.923878 GGAAGGTAAAACAAGCATAACTTCAAA 59.076 33.333 10.83 0.00 42.48 2.69
84 85 7.286775 AGGAAGGTAAAACAAGCATAACTTCAA 59.713 33.333 10.83 0.00 42.48 2.69
85 86 6.775629 AGGAAGGTAAAACAAGCATAACTTCA 59.224 34.615 10.83 0.00 42.48 3.02
86 87 7.215719 AGGAAGGTAAAACAAGCATAACTTC 57.784 36.000 2.06 2.06 40.83 3.01
87 88 8.739972 CATAGGAAGGTAAAACAAGCATAACTT 58.260 33.333 0.00 0.00 40.05 2.66
88 89 7.148069 GCATAGGAAGGTAAAACAAGCATAACT 60.148 37.037 0.00 0.00 0.00 2.24
89 90 6.972901 GCATAGGAAGGTAAAACAAGCATAAC 59.027 38.462 0.00 0.00 0.00 1.89
90 91 6.661377 TGCATAGGAAGGTAAAACAAGCATAA 59.339 34.615 0.00 0.00 0.00 1.90
91 92 6.184068 TGCATAGGAAGGTAAAACAAGCATA 58.816 36.000 0.00 0.00 0.00 3.14
92 93 5.016173 TGCATAGGAAGGTAAAACAAGCAT 58.984 37.500 0.00 0.00 0.00 3.79
93 94 4.402829 TGCATAGGAAGGTAAAACAAGCA 58.597 39.130 0.00 0.00 0.00 3.91
94 95 5.048013 ACTTGCATAGGAAGGTAAAACAAGC 60.048 40.000 3.40 0.00 36.36 4.01
95 96 6.575162 ACTTGCATAGGAAGGTAAAACAAG 57.425 37.500 3.40 0.00 38.31 3.16
96 97 6.547880 TCAACTTGCATAGGAAGGTAAAACAA 59.452 34.615 3.40 0.00 0.00 2.83
97 98 6.065374 TCAACTTGCATAGGAAGGTAAAACA 58.935 36.000 3.40 0.00 0.00 2.83
98 99 6.569179 TCAACTTGCATAGGAAGGTAAAAC 57.431 37.500 3.40 0.00 0.00 2.43
99 100 7.669722 AGAATCAACTTGCATAGGAAGGTAAAA 59.330 33.333 3.40 0.00 0.00 1.52
100 101 7.175104 AGAATCAACTTGCATAGGAAGGTAAA 58.825 34.615 3.40 0.00 0.00 2.01
101 102 6.721318 AGAATCAACTTGCATAGGAAGGTAA 58.279 36.000 3.40 0.00 0.00 2.85
102 103 6.313519 AGAATCAACTTGCATAGGAAGGTA 57.686 37.500 3.40 0.00 0.00 3.08
103 104 5.184892 AGAATCAACTTGCATAGGAAGGT 57.815 39.130 3.40 0.00 0.00 3.50
104 105 5.888105 CAAGAATCAACTTGCATAGGAAGG 58.112 41.667 3.40 0.00 40.24 3.46
125 126 9.195075 TTGTGAGCAAACAACTTATGGGAACAA 62.195 37.037 0.47 0.00 38.43 2.83
126 127 7.805557 TTGTGAGCAAACAACTTATGGGAACA 61.806 38.462 0.47 0.00 38.98 3.18
127 128 4.037446 TGTGAGCAAACAACTTATGGGAAC 59.963 41.667 0.00 0.00 0.00 3.62
128 129 4.211125 TGTGAGCAAACAACTTATGGGAA 58.789 39.130 0.00 0.00 0.00 3.97
129 130 3.826524 TGTGAGCAAACAACTTATGGGA 58.173 40.909 0.00 0.00 0.00 4.37
130 131 4.582701 TTGTGAGCAAACAACTTATGGG 57.417 40.909 0.47 0.00 35.16 4.00
131 132 6.146021 GGATTTTGTGAGCAAACAACTTATGG 59.854 38.462 3.91 0.00 43.47 2.74
132 133 6.146021 GGGATTTTGTGAGCAAACAACTTATG 59.854 38.462 3.91 0.00 43.47 1.90
133 134 6.041979 AGGGATTTTGTGAGCAAACAACTTAT 59.958 34.615 3.91 0.00 43.47 1.73
134 135 5.362430 AGGGATTTTGTGAGCAAACAACTTA 59.638 36.000 3.91 0.00 43.47 2.24
135 136 4.162131 AGGGATTTTGTGAGCAAACAACTT 59.838 37.500 3.91 0.00 43.47 2.66
136 137 3.706086 AGGGATTTTGTGAGCAAACAACT 59.294 39.130 3.91 0.00 43.47 3.16
137 138 4.058721 AGGGATTTTGTGAGCAAACAAC 57.941 40.909 3.91 0.00 43.47 3.32
138 139 5.782047 CATAGGGATTTTGTGAGCAAACAA 58.218 37.500 0.47 0.47 43.47 2.83
139 140 4.321899 GCATAGGGATTTTGTGAGCAAACA 60.322 41.667 0.00 0.00 43.47 2.83
140 141 4.176271 GCATAGGGATTTTGTGAGCAAAC 58.824 43.478 0.00 0.00 43.47 2.93
141 142 3.831333 TGCATAGGGATTTTGTGAGCAAA 59.169 39.130 0.00 0.00 42.25 3.68
142 143 3.429492 TGCATAGGGATTTTGTGAGCAA 58.571 40.909 0.00 0.00 0.00 3.91
143 144 3.018856 CTGCATAGGGATTTTGTGAGCA 58.981 45.455 0.00 0.00 0.00 4.26
144 145 2.360165 CCTGCATAGGGATTTTGTGAGC 59.640 50.000 0.00 0.00 40.63 4.26
145 146 2.360165 GCCTGCATAGGGATTTTGTGAG 59.640 50.000 0.00 0.00 44.75 3.51
146 147 2.378038 GCCTGCATAGGGATTTTGTGA 58.622 47.619 0.00 0.00 44.75 3.58
147 148 1.410153 GGCCTGCATAGGGATTTTGTG 59.590 52.381 0.00 0.00 44.75 3.33
148 149 1.689258 GGGCCTGCATAGGGATTTTGT 60.689 52.381 0.84 0.00 44.75 2.83
149 150 1.043022 GGGCCTGCATAGGGATTTTG 58.957 55.000 0.84 0.00 44.75 2.44
150 151 0.636101 TGGGCCTGCATAGGGATTTT 59.364 50.000 4.53 0.00 44.75 1.82
151 152 0.106015 GTGGGCCTGCATAGGGATTT 60.106 55.000 4.53 0.00 44.75 2.17
152 153 1.538666 GTGGGCCTGCATAGGGATT 59.461 57.895 4.53 0.00 44.75 3.01
153 154 2.464403 GGTGGGCCTGCATAGGGAT 61.464 63.158 4.53 0.00 44.75 3.85
154 155 3.096495 GGTGGGCCTGCATAGGGA 61.096 66.667 4.53 0.00 44.75 4.20
155 156 4.209866 GGGTGGGCCTGCATAGGG 62.210 72.222 4.53 0.00 44.75 3.53
157 158 0.109342 CTTAGGGTGGGCCTGCATAG 59.891 60.000 4.53 0.00 34.45 2.23
158 159 1.994885 GCTTAGGGTGGGCCTGCATA 61.995 60.000 4.53 0.00 34.45 3.14
159 160 3.010144 CTTAGGGTGGGCCTGCAT 58.990 61.111 4.53 0.00 34.45 3.96
160 161 4.047125 GCTTAGGGTGGGCCTGCA 62.047 66.667 4.53 0.00 34.45 4.41
161 162 4.822628 GGCTTAGGGTGGGCCTGC 62.823 72.222 4.53 0.00 42.31 4.85
162 163 4.129148 GGGCTTAGGGTGGGCCTG 62.129 72.222 4.53 0.00 44.70 4.85
163 164 2.577421 TATGGGCTTAGGGTGGGCCT 62.577 60.000 4.53 0.00 46.53 5.19
164 165 2.082414 TATGGGCTTAGGGTGGGCC 61.082 63.158 0.00 0.00 46.56 5.80
165 166 1.150764 GTATGGGCTTAGGGTGGGC 59.849 63.158 0.00 0.00 0.00 5.36
166 167 1.149101 ATGTATGGGCTTAGGGTGGG 58.851 55.000 0.00 0.00 0.00 4.61
167 168 4.042809 TGAATATGTATGGGCTTAGGGTGG 59.957 45.833 0.00 0.00 0.00 4.61
168 169 5.241403 TGAATATGTATGGGCTTAGGGTG 57.759 43.478 0.00 0.00 0.00 4.61
169 170 5.044846 GGATGAATATGTATGGGCTTAGGGT 60.045 44.000 0.00 0.00 0.00 4.34
170 171 5.192522 AGGATGAATATGTATGGGCTTAGGG 59.807 44.000 0.00 0.00 0.00 3.53
171 172 6.070021 TGAGGATGAATATGTATGGGCTTAGG 60.070 42.308 0.00 0.00 0.00 2.69
172 173 6.950842 TGAGGATGAATATGTATGGGCTTAG 58.049 40.000 0.00 0.00 0.00 2.18
173 174 6.950860 TGAGGATGAATATGTATGGGCTTA 57.049 37.500 0.00 0.00 0.00 3.09
174 175 5.848286 TGAGGATGAATATGTATGGGCTT 57.152 39.130 0.00 0.00 0.00 4.35
175 176 5.104193 GGATGAGGATGAATATGTATGGGCT 60.104 44.000 0.00 0.00 0.00 5.19
176 177 5.128919 GGATGAGGATGAATATGTATGGGC 58.871 45.833 0.00 0.00 0.00 5.36
177 178 5.363101 CGGATGAGGATGAATATGTATGGG 58.637 45.833 0.00 0.00 0.00 4.00
178 179 4.813161 GCGGATGAGGATGAATATGTATGG 59.187 45.833 0.00 0.00 0.00 2.74
179 180 5.422145 TGCGGATGAGGATGAATATGTATG 58.578 41.667 0.00 0.00 0.00 2.39
180 181 5.682234 TGCGGATGAGGATGAATATGTAT 57.318 39.130 0.00 0.00 0.00 2.29
181 182 5.395657 GGATGCGGATGAGGATGAATATGTA 60.396 44.000 0.00 0.00 0.00 2.29
182 183 4.511527 GATGCGGATGAGGATGAATATGT 58.488 43.478 0.00 0.00 0.00 2.29
183 184 3.875727 GGATGCGGATGAGGATGAATATG 59.124 47.826 0.00 0.00 0.00 1.78
184 185 3.118112 GGGATGCGGATGAGGATGAATAT 60.118 47.826 0.00 0.00 0.00 1.28
185 186 2.237143 GGGATGCGGATGAGGATGAATA 59.763 50.000 0.00 0.00 0.00 1.75
186 187 1.004044 GGGATGCGGATGAGGATGAAT 59.996 52.381 0.00 0.00 0.00 2.57
187 188 0.397941 GGGATGCGGATGAGGATGAA 59.602 55.000 0.00 0.00 0.00 2.57
188 189 0.763986 TGGGATGCGGATGAGGATGA 60.764 55.000 0.00 0.00 0.00 2.92
189 190 0.321387 CTGGGATGCGGATGAGGATG 60.321 60.000 0.00 0.00 0.00 3.51
190 191 0.472543 TCTGGGATGCGGATGAGGAT 60.473 55.000 0.00 0.00 0.00 3.24
191 192 1.075301 TCTGGGATGCGGATGAGGA 60.075 57.895 0.00 0.00 0.00 3.71
192 193 1.070445 GTCTGGGATGCGGATGAGG 59.930 63.158 0.00 0.00 0.00 3.86
193 194 1.070445 GGTCTGGGATGCGGATGAG 59.930 63.158 0.00 0.00 0.00 2.90
194 195 1.271127 TTGGTCTGGGATGCGGATGA 61.271 55.000 0.00 0.00 0.00 2.92
195 196 0.394216 TTTGGTCTGGGATGCGGATG 60.394 55.000 0.00 0.00 0.00 3.51
196 197 0.394352 GTTTGGTCTGGGATGCGGAT 60.394 55.000 0.00 0.00 0.00 4.18
197 198 1.002624 GTTTGGTCTGGGATGCGGA 60.003 57.895 0.00 0.00 0.00 5.54
198 199 2.046285 GGTTTGGTCTGGGATGCGG 61.046 63.158 0.00 0.00 0.00 5.69
199 200 2.046285 GGGTTTGGTCTGGGATGCG 61.046 63.158 0.00 0.00 0.00 4.73
200 201 0.623723 TAGGGTTTGGTCTGGGATGC 59.376 55.000 0.00 0.00 0.00 3.91
201 202 1.916181 ACTAGGGTTTGGTCTGGGATG 59.084 52.381 0.00 0.00 0.00 3.51
202 203 2.197465 GACTAGGGTTTGGTCTGGGAT 58.803 52.381 0.00 0.00 0.00 3.85
203 204 1.132657 TGACTAGGGTTTGGTCTGGGA 60.133 52.381 0.00 0.00 0.00 4.37
204 205 1.003233 GTGACTAGGGTTTGGTCTGGG 59.997 57.143 0.00 0.00 0.00 4.45
205 206 1.978580 AGTGACTAGGGTTTGGTCTGG 59.021 52.381 0.00 0.00 0.00 3.86
206 207 2.028020 GGAGTGACTAGGGTTTGGTCTG 60.028 54.545 0.00 0.00 0.00 3.51
207 208 2.258109 GGAGTGACTAGGGTTTGGTCT 58.742 52.381 0.00 0.00 0.00 3.85
208 209 1.975680 TGGAGTGACTAGGGTTTGGTC 59.024 52.381 0.00 0.00 0.00 4.02
209 210 2.112279 TGGAGTGACTAGGGTTTGGT 57.888 50.000 0.00 0.00 0.00 3.67
210 211 3.610911 GAATGGAGTGACTAGGGTTTGG 58.389 50.000 0.00 0.00 0.00 3.28
211 212 3.610911 GGAATGGAGTGACTAGGGTTTG 58.389 50.000 0.00 0.00 0.00 2.93
212 213 2.236395 CGGAATGGAGTGACTAGGGTTT 59.764 50.000 0.00 0.00 0.00 3.27
213 214 1.831736 CGGAATGGAGTGACTAGGGTT 59.168 52.381 0.00 0.00 0.00 4.11
214 215 1.273098 ACGGAATGGAGTGACTAGGGT 60.273 52.381 0.00 0.00 0.00 4.34
215 216 1.409427 GACGGAATGGAGTGACTAGGG 59.591 57.143 0.00 0.00 0.00 3.53
216 217 1.409427 GGACGGAATGGAGTGACTAGG 59.591 57.143 0.00 0.00 0.00 3.02
217 218 2.100197 TGGACGGAATGGAGTGACTAG 58.900 52.381 0.00 0.00 0.00 2.57
218 219 1.822990 GTGGACGGAATGGAGTGACTA 59.177 52.381 0.00 0.00 0.00 2.59
219 220 0.608640 GTGGACGGAATGGAGTGACT 59.391 55.000 0.00 0.00 0.00 3.41
220 221 0.320374 TGTGGACGGAATGGAGTGAC 59.680 55.000 0.00 0.00 0.00 3.67
221 222 1.052617 TTGTGGACGGAATGGAGTGA 58.947 50.000 0.00 0.00 0.00 3.41
222 223 1.535462 GTTTGTGGACGGAATGGAGTG 59.465 52.381 0.00 0.00 0.00 3.51
223 224 1.420138 AGTTTGTGGACGGAATGGAGT 59.580 47.619 0.00 0.00 0.00 3.85
224 225 2.076863 GAGTTTGTGGACGGAATGGAG 58.923 52.381 0.00 0.00 0.00 3.86
225 226 1.271163 GGAGTTTGTGGACGGAATGGA 60.271 52.381 0.00 0.00 0.00 3.41
226 227 1.165270 GGAGTTTGTGGACGGAATGG 58.835 55.000 0.00 0.00 0.00 3.16
227 228 0.796312 CGGAGTTTGTGGACGGAATG 59.204 55.000 0.00 0.00 0.00 2.67
228 229 0.395312 ACGGAGTTTGTGGACGGAAT 59.605 50.000 0.00 0.00 37.78 3.01
229 230 1.824658 ACGGAGTTTGTGGACGGAA 59.175 52.632 0.00 0.00 37.78 4.30
230 231 3.541072 ACGGAGTTTGTGGACGGA 58.459 55.556 0.00 0.00 37.78 4.69
246 247 0.250513 AGGCTGGAGATTGTCGGAAC 59.749 55.000 0.00 0.00 0.00 3.62
247 248 0.984230 AAGGCTGGAGATTGTCGGAA 59.016 50.000 0.00 0.00 0.00 4.30
248 249 0.537188 GAAGGCTGGAGATTGTCGGA 59.463 55.000 0.00 0.00 0.00 4.55
249 250 0.539051 AGAAGGCTGGAGATTGTCGG 59.461 55.000 0.00 0.00 0.00 4.79
250 251 1.472376 GGAGAAGGCTGGAGATTGTCG 60.472 57.143 0.00 0.00 0.00 4.35
251 252 1.472376 CGGAGAAGGCTGGAGATTGTC 60.472 57.143 0.00 0.00 0.00 3.18
252 253 0.539051 CGGAGAAGGCTGGAGATTGT 59.461 55.000 0.00 0.00 0.00 2.71
253 254 0.179062 CCGGAGAAGGCTGGAGATTG 60.179 60.000 0.00 0.00 36.35 2.67
254 255 2.216148 CCGGAGAAGGCTGGAGATT 58.784 57.895 0.00 0.00 36.35 2.40
255 256 3.962557 CCGGAGAAGGCTGGAGAT 58.037 61.111 0.00 0.00 36.35 2.75
263 264 1.519455 GTCGTCATGCCGGAGAAGG 60.519 63.158 5.05 0.00 0.00 3.46
264 265 1.519455 GGTCGTCATGCCGGAGAAG 60.519 63.158 5.05 1.66 0.00 2.85
265 266 1.822114 TTGGTCGTCATGCCGGAGAA 61.822 55.000 5.05 0.00 0.00 2.87
266 267 2.279810 TTGGTCGTCATGCCGGAGA 61.280 57.895 5.05 0.00 0.00 3.71
270 271 1.298157 ATGTGTTGGTCGTCATGCCG 61.298 55.000 0.00 0.00 0.00 5.69
293 294 1.202371 TCCTATTTAGCGACCTGTGCG 60.202 52.381 0.00 0.00 37.44 5.34
296 297 2.694109 GTCCTCCTATTTAGCGACCTGT 59.306 50.000 0.00 0.00 0.00 4.00
416 417 7.230712 ACCCTTTGGATAAACATCGATATTTCC 59.769 37.037 4.65 2.53 34.81 3.13
417 418 8.076178 CACCCTTTGGATAAACATCGATATTTC 58.924 37.037 4.65 0.00 34.81 2.17
560 561 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
561 562 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
562 563 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
563 564 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
564 565 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
565 566 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
566 567 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
567 568 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
568 569 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
569 570 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
570 571 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
571 572 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
572 573 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
573 574 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
574 575 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
575 576 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
576 577 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
577 578 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
578 579 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
579 580 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
580 581 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
581 582 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
582 583 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
583 584 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
584 585 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
585 586 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
586 587 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
587 588 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
588 589 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
589 590 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
590 591 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
591 592 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
592 593 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
593 594 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
594 595 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
595 596 0.454285 GCACACACACACACACACAC 60.454 55.000 0.00 0.00 0.00 3.82
596 597 1.872468 GCACACACACACACACACA 59.128 52.632 0.00 0.00 0.00 3.72
597 598 1.225991 CGCACACACACACACACAC 60.226 57.895 0.00 0.00 0.00 3.82
598 599 1.669437 ACGCACACACACACACACA 60.669 52.632 0.00 0.00 0.00 3.72
599 600 1.225991 CACGCACACACACACACAC 60.226 57.895 0.00 0.00 0.00 3.82
600 601 1.669437 ACACGCACACACACACACA 60.669 52.632 0.00 0.00 0.00 3.72
601 602 1.225991 CACACGCACACACACACAC 60.226 57.895 0.00 0.00 0.00 3.82
602 603 1.669437 ACACACGCACACACACACA 60.669 52.632 0.00 0.00 0.00 3.72
603 604 1.225991 CACACACGCACACACACAC 60.226 57.895 0.00 0.00 0.00 3.82
604 605 1.669437 ACACACACGCACACACACA 60.669 52.632 0.00 0.00 0.00 3.72
605 606 1.225991 CACACACACGCACACACAC 60.226 57.895 0.00 0.00 0.00 3.82
606 607 1.669437 ACACACACACGCACACACA 60.669 52.632 0.00 0.00 0.00 3.72
607 608 1.225991 CACACACACACGCACACAC 60.226 57.895 0.00 0.00 0.00 3.82
608 609 1.669437 ACACACACACACGCACACA 60.669 52.632 0.00 0.00 0.00 3.72
609 610 1.225991 CACACACACACACGCACAC 60.226 57.895 0.00 0.00 0.00 3.82
610 611 1.669437 ACACACACACACACGCACA 60.669 52.632 0.00 0.00 0.00 4.57
611 612 1.225991 CACACACACACACACGCAC 60.226 57.895 0.00 0.00 0.00 5.34
612 613 1.669437 ACACACACACACACACGCA 60.669 52.632 0.00 0.00 0.00 5.24
613 614 1.225991 CACACACACACACACACGC 60.226 57.895 0.00 0.00 0.00 5.34
614 615 1.225991 GCACACACACACACACACG 60.226 57.895 0.00 0.00 0.00 4.49
615 616 0.239613 TTGCACACACACACACACAC 59.760 50.000 0.00 0.00 0.00 3.82
616 617 1.135460 CATTGCACACACACACACACA 60.135 47.619 0.00 0.00 0.00 3.72
617 618 1.132073 TCATTGCACACACACACACAC 59.868 47.619 0.00 0.00 0.00 3.82
618 619 1.457346 TCATTGCACACACACACACA 58.543 45.000 0.00 0.00 0.00 3.72
619 620 2.780065 ATCATTGCACACACACACAC 57.220 45.000 0.00 0.00 0.00 3.82
620 621 4.907879 TTTATCATTGCACACACACACA 57.092 36.364 0.00 0.00 0.00 3.72
703 707 4.202419 TGCCCAAGTAATGCGTATAAGGAT 60.202 41.667 0.00 0.00 0.00 3.24
738 742 1.153449 GCGTTGGATCGATGGACCA 60.153 57.895 0.54 0.39 0.00 4.02
804 809 4.884668 AGATTGTTTTCACGTAGGAGGA 57.115 40.909 0.00 0.00 0.00 3.71
957 983 6.155475 ACCACAAGAATCACTAGCTAGATC 57.845 41.667 27.45 17.31 0.00 2.75
973 999 2.513065 GATGCGCGTGGAACCACAAG 62.513 60.000 21.41 15.35 46.47 3.16
1027 1053 2.664424 CGAAGTAATTGTTGTGCGGGTG 60.664 50.000 0.00 0.00 0.00 4.61
1365 1391 0.417841 TCTTGGGGAAGTAGGAGGCT 59.582 55.000 0.00 0.00 0.00 4.58
1390 1416 1.258445 AAGGTGTAGCCCTCAGACCG 61.258 60.000 0.00 0.00 38.26 4.79
1538 1571 6.711579 ACGATTAACACAAGTTACACAACAG 58.288 36.000 0.00 0.00 39.80 3.16
1612 1647 3.114616 CTTGTCAGCCACCGCTCG 61.115 66.667 0.00 0.00 43.95 5.03
1613 1648 3.426568 GCTTGTCAGCCACCGCTC 61.427 66.667 0.00 0.00 43.95 5.03
1695 1745 0.322726 TCACGGTCTCGGACATGGTA 60.323 55.000 0.00 0.00 41.39 3.25
1723 1773 4.754372 TGTGTACTACGTACCAGTTGAG 57.246 45.455 0.00 0.00 38.14 3.02
1779 1831 1.743394 GCTACATAAGGGTGTTGCCAC 59.257 52.381 2.77 0.00 42.41 5.01
1780 1832 1.352687 TGCTACATAAGGGTGTTGCCA 59.647 47.619 10.07 0.00 45.84 4.92
1901 1953 0.595588 TTGCACGTTGTGGCTAATGG 59.404 50.000 0.00 0.00 33.64 3.16
1904 1956 1.890876 AGATTGCACGTTGTGGCTAA 58.109 45.000 0.00 0.00 33.64 3.09
1905 1957 1.890876 AAGATTGCACGTTGTGGCTA 58.109 45.000 0.00 0.00 33.64 3.93
2002 2061 4.643387 AGGCCCAGCGTTCGCTTT 62.643 61.111 17.05 0.00 39.76 3.51
2132 2191 2.882132 CTTTTTAAGGCCGGCCCG 59.118 61.111 41.72 17.09 39.21 6.13
2133 2192 2.577059 GCTTTTTAAGGCCGGCCC 59.423 61.111 41.72 23.87 36.58 5.80
2155 2214 3.062466 GGGCCTCGGTTTTCTGCC 61.062 66.667 0.84 0.00 41.42 4.85
2156 2215 2.282180 TGGGCCTCGGTTTTCTGC 60.282 61.111 4.53 0.00 0.00 4.26
2157 2216 1.675641 CCTGGGCCTCGGTTTTCTG 60.676 63.158 4.53 0.00 0.00 3.02
2158 2217 2.757077 CCTGGGCCTCGGTTTTCT 59.243 61.111 4.53 0.00 0.00 2.52
2159 2218 3.062466 GCCTGGGCCTCGGTTTTC 61.062 66.667 4.53 0.00 34.56 2.29
2176 2235 3.739080 ATGGTAGGGCCTGGGAGGG 62.739 68.421 18.53 0.00 35.37 4.30
2177 2236 2.039405 ATGGTAGGGCCTGGGAGG 60.039 66.667 18.53 0.00 38.80 4.30
2178 2237 1.384502 TGATGGTAGGGCCTGGGAG 60.385 63.158 18.53 0.00 38.35 4.30
2179 2238 1.384502 CTGATGGTAGGGCCTGGGA 60.385 63.158 18.53 0.00 38.35 4.37
2180 2239 2.455565 CCTGATGGTAGGGCCTGGG 61.456 68.421 18.53 2.97 38.35 4.45
2181 2240 3.125376 GCCTGATGGTAGGGCCTGG 62.125 68.421 18.53 8.00 39.96 4.45
2182 2241 2.512896 GCCTGATGGTAGGGCCTG 59.487 66.667 18.53 0.00 39.96 4.85
2186 2245 1.807814 AAGTAGGCCTGATGGTAGGG 58.192 55.000 17.99 0.00 38.32 3.53
2187 2246 3.199946 TGAAAAGTAGGCCTGATGGTAGG 59.800 47.826 17.99 0.00 40.95 3.18
2188 2247 4.487714 TGAAAAGTAGGCCTGATGGTAG 57.512 45.455 17.99 0.00 35.27 3.18
2189 2248 4.843728 CTTGAAAAGTAGGCCTGATGGTA 58.156 43.478 17.99 0.00 39.70 3.25
2190 2249 3.690460 CTTGAAAAGTAGGCCTGATGGT 58.310 45.455 17.99 0.00 39.70 3.55
2203 2262 0.598065 CCCGGCTTGGACTTGAAAAG 59.402 55.000 0.00 0.00 42.46 2.27
2204 2263 1.460273 GCCCGGCTTGGACTTGAAAA 61.460 55.000 0.71 0.00 42.00 2.29
2205 2264 1.901464 GCCCGGCTTGGACTTGAAA 60.901 57.895 0.71 0.00 42.00 2.69
2206 2265 2.282180 GCCCGGCTTGGACTTGAA 60.282 61.111 0.71 0.00 42.00 2.69
2207 2266 4.344865 GGCCCGGCTTGGACTTGA 62.345 66.667 9.86 0.00 42.00 3.02
2216 2275 4.815973 TACCAGATGGGCCCGGCT 62.816 66.667 19.37 14.35 42.05 5.52
2217 2276 2.847366 TTTTACCAGATGGGCCCGGC 62.847 60.000 19.37 11.89 42.05 6.13
2218 2277 0.323908 TTTTTACCAGATGGGCCCGG 60.324 55.000 19.37 15.10 42.05 5.73
2219 2278 3.274601 TTTTTACCAGATGGGCCCG 57.725 52.632 19.37 4.36 42.05 6.13
2234 2293 3.646162 CCTAAGGGCTTTTCAGGGTTTTT 59.354 43.478 0.00 0.00 0.00 1.94
2235 2294 3.239449 CCTAAGGGCTTTTCAGGGTTTT 58.761 45.455 0.00 0.00 0.00 2.43
2236 2295 2.492753 CCCTAAGGGCTTTTCAGGGTTT 60.493 50.000 8.67 0.00 41.00 3.27
2237 2296 1.077169 CCCTAAGGGCTTTTCAGGGTT 59.923 52.381 8.67 0.00 41.00 4.11
2238 2297 0.704664 CCCTAAGGGCTTTTCAGGGT 59.295 55.000 8.67 0.00 41.00 4.34
2239 2298 3.596362 CCCTAAGGGCTTTTCAGGG 57.404 57.895 3.08 3.08 40.10 4.45
2271 2330 0.323087 TTTTAAGGAAGAGGCCCGGC 60.323 55.000 0.00 0.00 0.00 6.13
2272 2331 2.024414 CATTTTAAGGAAGAGGCCCGG 58.976 52.381 0.00 0.00 0.00 5.73
2273 2332 1.405463 GCATTTTAAGGAAGAGGCCCG 59.595 52.381 0.00 0.00 0.00 6.13
2274 2333 1.757118 GGCATTTTAAGGAAGAGGCCC 59.243 52.381 0.00 0.00 34.17 5.80
2275 2334 2.456577 TGGCATTTTAAGGAAGAGGCC 58.543 47.619 0.00 0.00 40.51 5.19
2276 2335 4.743057 ATTGGCATTTTAAGGAAGAGGC 57.257 40.909 0.00 0.00 0.00 4.70
2277 2336 6.218746 GCATATTGGCATTTTAAGGAAGAGG 58.781 40.000 0.00 0.00 0.00 3.69
2278 2337 6.218746 GGCATATTGGCATTTTAAGGAAGAG 58.781 40.000 0.00 0.00 43.14 2.85
2279 2338 6.160576 GGCATATTGGCATTTTAAGGAAGA 57.839 37.500 0.00 0.00 43.14 2.87
2292 2351 0.105408 CTTGGGCTTGGCATATTGGC 59.895 55.000 0.00 0.00 44.03 4.52
2293 2352 0.105408 GCTTGGGCTTGGCATATTGG 59.895 55.000 0.00 0.00 35.22 3.16
2294 2353 0.105408 GGCTTGGGCTTGGCATATTG 59.895 55.000 0.00 0.00 38.73 1.90
2295 2354 1.050421 GGGCTTGGGCTTGGCATATT 61.050 55.000 0.00 0.00 38.73 1.28
2296 2355 1.458209 GGGCTTGGGCTTGGCATAT 60.458 57.895 0.00 0.00 38.73 1.78
2297 2356 2.043046 GGGCTTGGGCTTGGCATA 60.043 61.111 0.00 0.00 38.73 3.14
2298 2357 3.629035 ATGGGCTTGGGCTTGGCAT 62.629 57.895 0.00 0.00 38.73 4.40
2299 2358 4.319949 ATGGGCTTGGGCTTGGCA 62.320 61.111 0.00 0.00 38.73 4.92
2300 2359 3.464494 GATGGGCTTGGGCTTGGC 61.464 66.667 0.00 0.00 38.73 4.52
2301 2360 2.761213 GGATGGGCTTGGGCTTGG 60.761 66.667 0.00 0.00 38.73 3.61
2302 2361 2.037687 TGGATGGGCTTGGGCTTG 59.962 61.111 0.00 0.00 38.73 4.01
2303 2362 2.361771 CTGGATGGGCTTGGGCTT 59.638 61.111 0.00 0.00 38.73 4.35
2304 2363 3.747579 CCTGGATGGGCTTGGGCT 61.748 66.667 0.00 0.00 38.73 5.19
2312 2371 4.517934 CAGCAGGGCCTGGATGGG 62.518 72.222 33.43 8.90 36.00 4.00
2323 2382 1.531365 TTTTGAGCCCACCAGCAGG 60.531 57.895 0.00 0.00 42.21 4.85
2324 2383 0.825010 AGTTTTGAGCCCACCAGCAG 60.825 55.000 0.00 0.00 34.23 4.24
2325 2384 0.823356 GAGTTTTGAGCCCACCAGCA 60.823 55.000 0.00 0.00 34.23 4.41
2326 2385 0.823356 TGAGTTTTGAGCCCACCAGC 60.823 55.000 0.00 0.00 0.00 4.85
2327 2386 1.242076 CTGAGTTTTGAGCCCACCAG 58.758 55.000 0.00 0.00 0.00 4.00
2328 2387 0.178992 CCTGAGTTTTGAGCCCACCA 60.179 55.000 0.00 0.00 0.00 4.17
2329 2388 1.527433 GCCTGAGTTTTGAGCCCACC 61.527 60.000 0.00 0.00 0.00 4.61
2330 2389 1.527433 GGCCTGAGTTTTGAGCCCAC 61.527 60.000 0.00 0.00 37.66 4.61
2331 2390 1.228552 GGCCTGAGTTTTGAGCCCA 60.229 57.895 0.00 0.00 37.66 5.36
2332 2391 3.686760 GGCCTGAGTTTTGAGCCC 58.313 61.111 0.00 0.00 37.66 5.19
2333 2392 0.827507 TTGGGCCTGAGTTTTGAGCC 60.828 55.000 4.53 0.00 43.09 4.70
2334 2393 0.600057 CTTGGGCCTGAGTTTTGAGC 59.400 55.000 4.53 0.00 0.00 4.26
2335 2394 0.600057 GCTTGGGCCTGAGTTTTGAG 59.400 55.000 4.53 0.00 0.00 3.02
2336 2395 2.732289 GCTTGGGCCTGAGTTTTGA 58.268 52.632 4.53 0.00 0.00 2.69
2379 2438 1.202940 CCTAAAATCCAGGGCCTAGGC 60.203 57.143 26.55 26.55 41.06 3.93
2380 2439 1.425448 CCCTAAAATCCAGGGCCTAGG 59.575 57.143 5.28 10.90 46.27 3.02
2381 2440 2.959465 CCCTAAAATCCAGGGCCTAG 57.041 55.000 5.28 0.00 46.27 3.02
2387 2446 1.152756 CCCGGCCCTAAAATCCAGG 60.153 63.158 0.00 0.00 0.00 4.45
2388 2447 1.828224 GCCCGGCCCTAAAATCCAG 60.828 63.158 0.00 0.00 0.00 3.86
2389 2448 2.277404 GCCCGGCCCTAAAATCCA 59.723 61.111 0.00 0.00 0.00 3.41
2390 2449 2.520982 GGCCCGGCCCTAAAATCC 60.521 66.667 18.83 0.00 44.06 3.01
2406 2465 1.457643 TAGTCCTGGCCATCTCCGG 60.458 63.158 5.51 3.08 0.00 5.14
2407 2466 0.757188 ACTAGTCCTGGCCATCTCCG 60.757 60.000 5.51 0.00 0.00 4.63
2408 2467 1.139853 CAACTAGTCCTGGCCATCTCC 59.860 57.143 5.51 0.00 0.00 3.71
2409 2468 1.139853 CCAACTAGTCCTGGCCATCTC 59.860 57.143 5.51 0.00 0.00 2.75
2410 2469 1.207791 CCAACTAGTCCTGGCCATCT 58.792 55.000 5.51 8.22 0.00 2.90
2411 2470 0.181350 CCCAACTAGTCCTGGCCATC 59.819 60.000 5.51 0.00 0.00 3.51
2412 2471 1.281925 CCCCAACTAGTCCTGGCCAT 61.282 60.000 5.51 0.00 0.00 4.40
2413 2472 1.923395 CCCCAACTAGTCCTGGCCA 60.923 63.158 4.71 4.71 0.00 5.36
2414 2473 0.619543 TACCCCAACTAGTCCTGGCC 60.620 60.000 7.95 0.00 0.00 5.36
2415 2474 0.540454 GTACCCCAACTAGTCCTGGC 59.460 60.000 7.95 0.00 0.00 4.85
2416 2475 1.201424 GGTACCCCAACTAGTCCTGG 58.799 60.000 0.00 6.62 0.00 4.45
2417 2476 1.553704 GTGGTACCCCAACTAGTCCTG 59.446 57.143 10.07 0.00 44.15 3.86
2418 2477 1.554118 GGTGGTACCCCAACTAGTCCT 60.554 57.143 10.07 0.00 45.71 3.85
2419 2478 0.907486 GGTGGTACCCCAACTAGTCC 59.093 60.000 10.07 0.00 45.71 3.85
2734 2793 3.576356 GTCGGCGCCATCACCATG 61.576 66.667 28.98 7.38 0.00 3.66
2793 2852 1.787057 ATCGGTCGATCGGTCTCTGC 61.787 60.000 19.53 0.00 0.00 4.26
2890 2953 7.041030 TCCACAGATGTCTAAACGATCTATCTC 60.041 40.741 0.00 0.00 0.00 2.75
2900 2963 4.894784 TCACCTTCCACAGATGTCTAAAC 58.105 43.478 0.00 0.00 0.00 2.01
2928 2991 4.941263 TGTCCAGATTTTGATCTTAACGGG 59.059 41.667 0.00 0.00 0.00 5.28
2986 3049 7.278424 TGCTTTTGAAAAGGAAATCAACAAGAG 59.722 33.333 18.30 0.00 35.42 2.85
2989 3052 6.878389 AGTGCTTTTGAAAAGGAAATCAACAA 59.122 30.769 18.30 0.00 35.42 2.83
3011 3075 0.307760 GGAATTTATCGCCGCCAGTG 59.692 55.000 0.00 0.00 0.00 3.66
3035 3099 0.739462 TCCGACGAACATGACATGCC 60.739 55.000 15.49 6.83 0.00 4.40
3078 3142 4.371624 TCCATTCTGAGATTGTTGGTGT 57.628 40.909 3.95 0.00 0.00 4.16
3111 3175 5.513094 CCACTGTATTTTCTTCTCCTGACCA 60.513 44.000 0.00 0.00 0.00 4.02
3133 3197 1.178276 ACTTGCAAACCGTGAAACCA 58.822 45.000 0.00 0.00 0.00 3.67
3141 3205 4.000988 ACCAAGAGTATACTTGCAAACCG 58.999 43.478 6.88 0.00 43.83 4.44
3232 3296 7.074653 TCAGTTATTCAATGGACTATACCCC 57.925 40.000 0.00 0.00 0.00 4.95
3411 3475 3.605634 TGGTTTCGGTCCAACTATCATG 58.394 45.455 0.00 0.00 31.50 3.07
3456 3520 3.820467 CAGTTTTGATACTGCTTGGGTCA 59.180 43.478 0.00 0.00 39.12 4.02
3599 3663 4.579869 GGACCTATACGCATTGGATCATT 58.420 43.478 2.92 0.00 32.06 2.57
3602 3666 2.230508 TCGGACCTATACGCATTGGATC 59.769 50.000 2.92 0.00 32.06 3.36
3603 3667 2.029290 GTCGGACCTATACGCATTGGAT 60.029 50.000 2.92 0.00 32.06 3.41
3604 3668 1.338973 GTCGGACCTATACGCATTGGA 59.661 52.381 2.92 0.00 32.06 3.53
3605 3669 1.340248 AGTCGGACCTATACGCATTGG 59.660 52.381 4.14 0.00 33.68 3.16
3606 3670 2.034179 TGAGTCGGACCTATACGCATTG 59.966 50.000 4.14 0.00 29.42 2.82
3608 3672 1.977056 TGAGTCGGACCTATACGCAT 58.023 50.000 4.14 0.00 29.42 4.73
3609 3673 1.607148 CATGAGTCGGACCTATACGCA 59.393 52.381 4.14 0.00 29.42 5.24
3610 3674 1.666311 GCATGAGTCGGACCTATACGC 60.666 57.143 4.14 0.00 29.42 4.42
3651 3715 3.502211 CCGATGGTAAAGTTCAACAAGCT 59.498 43.478 0.00 0.00 0.00 3.74
3668 3732 1.942657 CCACATAAGCACTTCCCGATG 59.057 52.381 0.00 0.00 0.00 3.84


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.