Multiple sequence alignment - TraesCS2D01G541800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G541800 chr2D 100.000 3890 0 0 1 3890 620543066 620539177 0 7184
1 TraesCS2D01G541800 chr2B 92.192 3599 175 50 354 3890 760952444 760948890 0 4992
2 TraesCS2D01G541800 chr2A 92.948 3063 127 34 351 3365 752278812 752275791 0 4377
3 TraesCS2D01G541800 chr2A 91.304 529 22 4 3364 3889 752275686 752275179 0 701


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G541800 chr2D 620539177 620543066 3889 True 7184 7184 100.000 1 3890 1 chr2D.!!$R1 3889
1 TraesCS2D01G541800 chr2B 760948890 760952444 3554 True 4992 4992 92.192 354 3890 1 chr2B.!!$R1 3536
2 TraesCS2D01G541800 chr2A 752275179 752278812 3633 True 2539 4377 92.126 351 3889 2 chr2A.!!$R1 3538


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
199 200 0.034863 TTGGGGGACGGTTGCTTATC 60.035 55.0 0.0 0.0 0.0 1.75 F
736 750 0.109086 CGCATCTGAGTTCGTCCACT 60.109 55.0 0.0 0.0 0.0 4.00 F
1713 1748 0.104409 AGACAGGGTTCAGGGAGGTT 60.104 55.0 0.0 0.0 0.0 3.50 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1632 1667 0.400594 CTCTCCCGGTGAACCCTTTT 59.599 55.0 0.0 0.0 0.00 2.27 R
2532 2573 0.318441 CCACGAGCTTTGTCAGAGGA 59.682 55.0 0.0 0.0 0.00 3.71 R
3409 3590 1.375098 GCTGCTCCCTGTCTGCAATC 61.375 60.0 0.0 0.0 36.22 2.67 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 8.538409 GTTAATCTTCCAATGCTTTGATTGTT 57.462 30.769 13.58 5.02 34.60 2.83
26 27 8.650714 GTTAATCTTCCAATGCTTTGATTGTTC 58.349 33.333 13.58 0.00 34.60 3.18
27 28 4.797471 TCTTCCAATGCTTTGATTGTTCG 58.203 39.130 13.58 0.00 34.60 3.95
28 29 3.574284 TCCAATGCTTTGATTGTTCGG 57.426 42.857 13.58 0.00 34.60 4.30
29 30 1.994779 CCAATGCTTTGATTGTTCGGC 59.005 47.619 13.58 0.00 34.60 5.54
30 31 1.994779 CAATGCTTTGATTGTTCGGCC 59.005 47.619 6.48 0.00 34.60 6.13
31 32 0.171007 ATGCTTTGATTGTTCGGCCG 59.829 50.000 22.12 22.12 0.00 6.13
32 33 1.154035 GCTTTGATTGTTCGGCCGG 60.154 57.895 27.83 6.80 0.00 6.13
33 34 1.582610 GCTTTGATTGTTCGGCCGGA 61.583 55.000 27.83 16.16 0.00 5.14
34 35 1.094785 CTTTGATTGTTCGGCCGGAT 58.905 50.000 27.83 14.36 0.00 4.18
35 36 0.808125 TTTGATTGTTCGGCCGGATG 59.192 50.000 27.83 0.00 0.00 3.51
36 37 1.653094 TTGATTGTTCGGCCGGATGC 61.653 55.000 27.83 13.40 40.16 3.91
37 38 2.045438 ATTGTTCGGCCGGATGCA 60.045 55.556 27.83 15.94 43.89 3.96
38 39 1.447317 GATTGTTCGGCCGGATGCAT 61.447 55.000 27.83 10.19 43.89 3.96
39 40 1.037030 ATTGTTCGGCCGGATGCATT 61.037 50.000 27.83 12.14 43.89 3.56
40 41 1.247419 TTGTTCGGCCGGATGCATTT 61.247 50.000 27.83 0.00 43.89 2.32
41 42 1.226660 GTTCGGCCGGATGCATTTG 60.227 57.895 27.83 0.00 43.89 2.32
42 43 3.062500 TTCGGCCGGATGCATTTGC 62.063 57.895 27.83 3.97 43.89 3.68
43 44 3.520862 CGGCCGGATGCATTTGCT 61.521 61.111 20.10 0.00 43.89 3.91
44 45 2.894919 GGCCGGATGCATTTGCTT 59.105 55.556 5.05 0.00 43.89 3.91
45 46 1.218854 GGCCGGATGCATTTGCTTT 59.781 52.632 5.05 0.00 43.89 3.51
46 47 0.391528 GGCCGGATGCATTTGCTTTT 60.392 50.000 5.05 0.00 43.89 2.27
47 48 0.722848 GCCGGATGCATTTGCTTTTG 59.277 50.000 5.05 0.00 42.66 2.44
48 49 1.940752 GCCGGATGCATTTGCTTTTGT 60.941 47.619 5.05 0.00 42.66 2.83
49 50 2.415776 CCGGATGCATTTGCTTTTGTT 58.584 42.857 0.00 0.00 42.66 2.83
50 51 2.412770 CCGGATGCATTTGCTTTTGTTC 59.587 45.455 0.00 0.00 42.66 3.18
51 52 3.319755 CGGATGCATTTGCTTTTGTTCT 58.680 40.909 0.00 0.00 42.66 3.01
52 53 3.122278 CGGATGCATTTGCTTTTGTTCTG 59.878 43.478 0.00 0.00 42.66 3.02
53 54 3.120442 GGATGCATTTGCTTTTGTTCTGC 60.120 43.478 0.00 0.00 42.66 4.26
54 55 3.182341 TGCATTTGCTTTTGTTCTGCT 57.818 38.095 3.94 0.00 42.66 4.24
55 56 3.533547 TGCATTTGCTTTTGTTCTGCTT 58.466 36.364 3.94 0.00 42.66 3.91
56 57 3.940221 TGCATTTGCTTTTGTTCTGCTTT 59.060 34.783 3.94 0.00 42.66 3.51
57 58 4.395542 TGCATTTGCTTTTGTTCTGCTTTT 59.604 33.333 3.94 0.00 42.66 2.27
58 59 4.731480 GCATTTGCTTTTGTTCTGCTTTTG 59.269 37.500 0.00 0.00 38.21 2.44
59 60 5.674318 GCATTTGCTTTTGTTCTGCTTTTGT 60.674 36.000 0.00 0.00 38.21 2.83
60 61 5.529014 TTTGCTTTTGTTCTGCTTTTGTC 57.471 34.783 0.00 0.00 0.00 3.18
61 62 4.185467 TGCTTTTGTTCTGCTTTTGTCA 57.815 36.364 0.00 0.00 0.00 3.58
62 63 3.925913 TGCTTTTGTTCTGCTTTTGTCAC 59.074 39.130 0.00 0.00 0.00 3.67
63 64 3.925913 GCTTTTGTTCTGCTTTTGTCACA 59.074 39.130 0.00 0.00 0.00 3.58
64 65 4.567959 GCTTTTGTTCTGCTTTTGTCACAT 59.432 37.500 0.00 0.00 0.00 3.21
65 66 5.501252 GCTTTTGTTCTGCTTTTGTCACATG 60.501 40.000 0.00 0.00 0.00 3.21
66 67 3.082698 TGTTCTGCTTTTGTCACATGC 57.917 42.857 0.00 0.00 0.00 4.06
67 68 2.689471 TGTTCTGCTTTTGTCACATGCT 59.311 40.909 0.00 0.00 0.00 3.79
68 69 3.130869 TGTTCTGCTTTTGTCACATGCTT 59.869 39.130 0.00 0.00 0.00 3.91
69 70 3.631145 TCTGCTTTTGTCACATGCTTC 57.369 42.857 0.00 0.00 0.00 3.86
70 71 2.031769 TCTGCTTTTGTCACATGCTTCG 60.032 45.455 0.00 0.00 0.00 3.79
71 72 1.055338 GCTTTTGTCACATGCTTCGC 58.945 50.000 0.00 0.00 0.00 4.70
72 73 1.335324 GCTTTTGTCACATGCTTCGCT 60.335 47.619 0.00 0.00 0.00 4.93
73 74 2.578495 CTTTTGTCACATGCTTCGCTC 58.422 47.619 0.00 0.00 0.00 5.03
74 75 0.874390 TTTGTCACATGCTTCGCTCC 59.126 50.000 0.00 0.00 0.00 4.70
75 76 0.250252 TTGTCACATGCTTCGCTCCA 60.250 50.000 0.00 0.00 0.00 3.86
76 77 0.250252 TGTCACATGCTTCGCTCCAA 60.250 50.000 0.00 0.00 0.00 3.53
77 78 0.445436 GTCACATGCTTCGCTCCAAG 59.555 55.000 0.00 0.00 0.00 3.61
78 79 0.674581 TCACATGCTTCGCTCCAAGG 60.675 55.000 0.00 0.00 0.00 3.61
79 80 1.377725 ACATGCTTCGCTCCAAGGG 60.378 57.895 0.00 0.00 0.00 3.95
80 81 1.078214 CATGCTTCGCTCCAAGGGA 60.078 57.895 0.00 0.00 35.23 4.20
91 92 2.930950 CTCCAAGGGAGTTGTGTTTGA 58.069 47.619 4.08 0.00 44.25 2.69
92 93 3.490348 CTCCAAGGGAGTTGTGTTTGAT 58.510 45.455 4.08 0.00 44.25 2.57
93 94 3.486383 TCCAAGGGAGTTGTGTTTGATC 58.514 45.455 0.00 0.00 33.87 2.92
94 95 2.226437 CCAAGGGAGTTGTGTTTGATCG 59.774 50.000 0.00 0.00 33.87 3.69
95 96 2.878406 CAAGGGAGTTGTGTTTGATCGT 59.122 45.455 0.00 0.00 0.00 3.73
96 97 2.767505 AGGGAGTTGTGTTTGATCGTC 58.232 47.619 0.00 0.00 0.00 4.20
97 98 1.804748 GGGAGTTGTGTTTGATCGTCC 59.195 52.381 0.00 0.00 0.00 4.79
98 99 2.550208 GGGAGTTGTGTTTGATCGTCCT 60.550 50.000 0.00 0.00 0.00 3.85
99 100 2.480419 GGAGTTGTGTTTGATCGTCCTG 59.520 50.000 0.00 0.00 0.00 3.86
100 101 2.480419 GAGTTGTGTTTGATCGTCCTGG 59.520 50.000 0.00 0.00 0.00 4.45
101 102 1.535462 GTTGTGTTTGATCGTCCTGGG 59.465 52.381 0.00 0.00 0.00 4.45
102 103 0.036164 TGTGTTTGATCGTCCTGGGG 59.964 55.000 0.00 0.00 0.00 4.96
103 104 0.676782 GTGTTTGATCGTCCTGGGGG 60.677 60.000 0.00 0.00 0.00 5.40
104 105 0.838554 TGTTTGATCGTCCTGGGGGA 60.839 55.000 0.00 0.00 39.70 4.81
105 106 0.546598 GTTTGATCGTCCTGGGGGAT 59.453 55.000 0.00 0.00 44.33 3.85
112 113 2.696864 GTCCTGGGGGATGACTTCA 58.303 57.895 0.00 0.00 44.33 3.02
113 114 0.991920 GTCCTGGGGGATGACTTCAA 59.008 55.000 0.00 0.00 44.33 2.69
114 115 1.566231 GTCCTGGGGGATGACTTCAAT 59.434 52.381 0.00 0.00 44.33 2.57
115 116 1.565759 TCCTGGGGGATGACTTCAATG 59.434 52.381 0.00 0.00 36.57 2.82
116 117 1.285962 CCTGGGGGATGACTTCAATGT 59.714 52.381 0.00 0.00 33.58 2.71
117 118 2.291800 CCTGGGGGATGACTTCAATGTT 60.292 50.000 0.00 0.00 33.58 2.71
118 119 2.756760 CTGGGGGATGACTTCAATGTTG 59.243 50.000 0.00 0.00 0.00 3.33
119 120 2.102578 GGGGGATGACTTCAATGTTGG 58.897 52.381 0.00 0.00 0.00 3.77
120 121 2.291540 GGGGGATGACTTCAATGTTGGA 60.292 50.000 0.00 0.00 0.00 3.53
121 122 2.755103 GGGGATGACTTCAATGTTGGAC 59.245 50.000 0.00 0.00 0.00 4.02
122 123 3.420893 GGGATGACTTCAATGTTGGACA 58.579 45.455 0.00 0.00 0.00 4.02
123 124 4.019174 GGGATGACTTCAATGTTGGACAT 58.981 43.478 0.00 0.00 41.31 3.06
124 125 5.192927 GGGATGACTTCAATGTTGGACATA 58.807 41.667 0.00 0.00 37.97 2.29
125 126 5.297776 GGGATGACTTCAATGTTGGACATAG 59.702 44.000 0.00 0.00 37.97 2.23
126 127 6.115446 GGATGACTTCAATGTTGGACATAGA 58.885 40.000 0.00 0.00 37.97 1.98
127 128 6.599244 GGATGACTTCAATGTTGGACATAGAA 59.401 38.462 0.00 0.00 37.97 2.10
128 129 7.201679 GGATGACTTCAATGTTGGACATAGAAG 60.202 40.741 0.00 0.00 37.97 2.85
129 130 6.533730 TGACTTCAATGTTGGACATAGAAGT 58.466 36.000 0.00 0.00 44.67 3.01
130 131 6.998074 TGACTTCAATGTTGGACATAGAAGTT 59.002 34.615 0.00 0.00 42.79 2.66
131 132 8.154203 TGACTTCAATGTTGGACATAGAAGTTA 58.846 33.333 0.00 0.00 42.79 2.24
132 133 8.918202 ACTTCAATGTTGGACATAGAAGTTAA 57.082 30.769 0.00 0.00 40.71 2.01
133 134 8.784043 ACTTCAATGTTGGACATAGAAGTTAAC 58.216 33.333 0.00 0.00 40.71 2.01
134 135 8.918202 TTCAATGTTGGACATAGAAGTTAACT 57.082 30.769 1.12 1.12 37.97 2.24
138 139 8.788325 ATGTTGGACATAGAAGTTAACTAACC 57.212 34.615 8.92 1.65 36.99 2.85
139 140 7.163441 TGTTGGACATAGAAGTTAACTAACCC 58.837 38.462 8.92 4.66 36.88 4.11
140 141 7.016858 TGTTGGACATAGAAGTTAACTAACCCT 59.983 37.037 8.92 6.74 36.88 4.34
141 142 7.563724 TGGACATAGAAGTTAACTAACCCTT 57.436 36.000 8.92 0.00 36.88 3.95
142 143 7.981142 TGGACATAGAAGTTAACTAACCCTTT 58.019 34.615 8.92 0.00 36.88 3.11
143 144 9.103582 TGGACATAGAAGTTAACTAACCCTTTA 57.896 33.333 8.92 0.00 36.88 1.85
153 154 9.516546 AGTTAACTAACCCTTTATTTCCTTCTG 57.483 33.333 6.26 0.00 36.88 3.02
154 155 6.835819 AACTAACCCTTTATTTCCTTCTGC 57.164 37.500 0.00 0.00 0.00 4.26
155 156 6.140968 ACTAACCCTTTATTTCCTTCTGCT 57.859 37.500 0.00 0.00 0.00 4.24
156 157 5.946377 ACTAACCCTTTATTTCCTTCTGCTG 59.054 40.000 0.00 0.00 0.00 4.41
157 158 3.092301 ACCCTTTATTTCCTTCTGCTGC 58.908 45.455 0.00 0.00 0.00 5.25
158 159 3.091545 CCCTTTATTTCCTTCTGCTGCA 58.908 45.455 0.88 0.88 0.00 4.41
159 160 3.511146 CCCTTTATTTCCTTCTGCTGCAA 59.489 43.478 3.02 0.00 0.00 4.08
160 161 4.488879 CCTTTATTTCCTTCTGCTGCAAC 58.511 43.478 3.02 0.00 0.00 4.17
161 162 4.219288 CCTTTATTTCCTTCTGCTGCAACT 59.781 41.667 3.02 0.00 0.00 3.16
162 163 4.771590 TTATTTCCTTCTGCTGCAACTG 57.228 40.909 3.02 0.00 0.00 3.16
163 164 2.346766 TTTCCTTCTGCTGCAACTGA 57.653 45.000 3.02 0.00 0.00 3.41
164 165 1.597742 TTCCTTCTGCTGCAACTGAC 58.402 50.000 3.02 0.00 0.00 3.51
165 166 0.469494 TCCTTCTGCTGCAACTGACA 59.531 50.000 3.02 0.00 0.00 3.58
166 167 0.873054 CCTTCTGCTGCAACTGACAG 59.127 55.000 3.02 0.00 38.22 3.51
167 168 1.541889 CCTTCTGCTGCAACTGACAGA 60.542 52.381 10.08 0.00 37.32 3.41
168 169 2.424557 CTTCTGCTGCAACTGACAGAT 58.575 47.619 10.08 0.00 38.84 2.90
169 170 2.556144 TCTGCTGCAACTGACAGATT 57.444 45.000 10.08 0.00 37.32 2.40
170 171 2.854963 TCTGCTGCAACTGACAGATTT 58.145 42.857 10.08 0.00 37.32 2.17
171 172 3.216800 TCTGCTGCAACTGACAGATTTT 58.783 40.909 10.08 0.00 37.32 1.82
172 173 4.388485 TCTGCTGCAACTGACAGATTTTA 58.612 39.130 10.08 0.00 37.32 1.52
173 174 4.214119 TCTGCTGCAACTGACAGATTTTAC 59.786 41.667 10.08 0.00 37.32 2.01
174 175 3.253188 TGCTGCAACTGACAGATTTTACC 59.747 43.478 10.08 0.00 37.32 2.85
175 176 3.366374 GCTGCAACTGACAGATTTTACCC 60.366 47.826 10.08 0.00 37.32 3.69
176 177 3.153919 TGCAACTGACAGATTTTACCCC 58.846 45.455 10.08 0.00 0.00 4.95
177 178 2.492088 GCAACTGACAGATTTTACCCCC 59.508 50.000 10.08 0.00 0.00 5.40
178 179 3.814316 GCAACTGACAGATTTTACCCCCT 60.814 47.826 10.08 0.00 0.00 4.79
179 180 4.407365 CAACTGACAGATTTTACCCCCTT 58.593 43.478 10.08 0.00 0.00 3.95
180 181 4.741928 ACTGACAGATTTTACCCCCTTT 57.258 40.909 10.08 0.00 0.00 3.11
181 182 5.074746 ACTGACAGATTTTACCCCCTTTT 57.925 39.130 10.08 0.00 0.00 2.27
182 183 4.832823 ACTGACAGATTTTACCCCCTTTTG 59.167 41.667 10.08 0.00 0.00 2.44
183 184 4.156477 TGACAGATTTTACCCCCTTTTGG 58.844 43.478 0.00 0.00 39.97 3.28
193 194 3.771978 CCTTTTGGGGGACGGTTG 58.228 61.111 0.00 0.00 35.46 3.77
194 195 2.570284 CCTTTTGGGGGACGGTTGC 61.570 63.158 0.00 0.00 35.46 4.17
195 196 1.530655 CTTTTGGGGGACGGTTGCT 60.531 57.895 0.00 0.00 0.00 3.91
196 197 1.075896 TTTTGGGGGACGGTTGCTT 60.076 52.632 0.00 0.00 0.00 3.91
197 198 0.185416 TTTTGGGGGACGGTTGCTTA 59.815 50.000 0.00 0.00 0.00 3.09
198 199 0.406361 TTTGGGGGACGGTTGCTTAT 59.594 50.000 0.00 0.00 0.00 1.73
199 200 0.034863 TTGGGGGACGGTTGCTTATC 60.035 55.000 0.00 0.00 0.00 1.75
200 201 1.523032 GGGGGACGGTTGCTTATCG 60.523 63.158 0.00 0.00 36.12 2.92
201 202 1.523032 GGGGACGGTTGCTTATCGG 60.523 63.158 0.00 0.00 33.62 4.18
202 203 1.219935 GGGACGGTTGCTTATCGGT 59.780 57.895 0.00 0.00 33.62 4.69
203 204 0.392060 GGGACGGTTGCTTATCGGTT 60.392 55.000 0.00 0.00 33.62 4.44
204 205 1.445871 GGACGGTTGCTTATCGGTTT 58.554 50.000 0.00 0.00 33.62 3.27
205 206 1.395954 GGACGGTTGCTTATCGGTTTC 59.604 52.381 0.00 0.00 33.62 2.78
206 207 1.060122 GACGGTTGCTTATCGGTTTCG 59.940 52.381 0.00 0.00 33.62 3.46
207 208 1.073177 CGGTTGCTTATCGGTTTCGT 58.927 50.000 0.00 0.00 37.69 3.85
208 209 1.461897 CGGTTGCTTATCGGTTTCGTT 59.538 47.619 0.00 0.00 37.69 3.85
209 210 2.096119 CGGTTGCTTATCGGTTTCGTTT 60.096 45.455 0.00 0.00 37.69 3.60
210 211 3.485633 GGTTGCTTATCGGTTTCGTTTC 58.514 45.455 0.00 0.00 37.69 2.78
211 212 3.058777 GGTTGCTTATCGGTTTCGTTTCA 60.059 43.478 0.00 0.00 37.69 2.69
212 213 4.379082 GGTTGCTTATCGGTTTCGTTTCAT 60.379 41.667 0.00 0.00 37.69 2.57
213 214 4.335082 TGCTTATCGGTTTCGTTTCATG 57.665 40.909 0.00 0.00 37.69 3.07
214 215 3.997681 TGCTTATCGGTTTCGTTTCATGA 59.002 39.130 0.00 0.00 37.69 3.07
215 216 4.452795 TGCTTATCGGTTTCGTTTCATGAA 59.547 37.500 3.38 3.38 37.69 2.57
216 217 5.049336 TGCTTATCGGTTTCGTTTCATGAAA 60.049 36.000 16.91 16.91 37.69 2.69
217 218 6.027749 GCTTATCGGTTTCGTTTCATGAAAT 58.972 36.000 23.05 7.20 35.77 2.17
218 219 6.021468 GCTTATCGGTTTCGTTTCATGAAATG 60.021 38.462 27.51 27.51 40.92 2.32
219 220 4.822036 TCGGTTTCGTTTCATGAAATGT 57.178 36.364 30.25 0.00 40.62 2.71
220 221 5.926214 TCGGTTTCGTTTCATGAAATGTA 57.074 34.783 30.25 22.56 40.62 2.29
221 222 6.301687 TCGGTTTCGTTTCATGAAATGTAA 57.698 33.333 30.25 25.92 40.62 2.41
222 223 6.904498 TCGGTTTCGTTTCATGAAATGTAAT 58.096 32.000 30.25 0.00 40.62 1.89
223 224 7.018826 TCGGTTTCGTTTCATGAAATGTAATC 58.981 34.615 30.25 26.50 40.62 1.75
224 225 6.799441 CGGTTTCGTTTCATGAAATGTAATCA 59.201 34.615 30.25 14.88 46.80 2.57
225 226 7.484641 CGGTTTCGTTTCATGAAATGTAATCAT 59.515 33.333 30.25 0.00 46.80 2.45
233 234 6.964807 CATGAAATGTAATCATGGGGAGAA 57.035 37.500 8.31 0.00 46.65 2.87
234 235 7.350744 CATGAAATGTAATCATGGGGAGAAA 57.649 36.000 8.31 0.00 46.65 2.52
235 236 7.784037 CATGAAATGTAATCATGGGGAGAAAA 58.216 34.615 8.31 0.00 46.65 2.29
236 237 7.789202 TGAAATGTAATCATGGGGAGAAAAA 57.211 32.000 0.00 0.00 34.19 1.94
237 238 7.610865 TGAAATGTAATCATGGGGAGAAAAAC 58.389 34.615 0.00 0.00 34.19 2.43
238 239 7.454380 TGAAATGTAATCATGGGGAGAAAAACT 59.546 33.333 0.00 0.00 34.19 2.66
239 240 7.410120 AATGTAATCATGGGGAGAAAAACTC 57.590 36.000 0.00 0.00 38.32 3.01
240 241 5.893824 ATGTAATCATGGGGAGAAAAACTCC 59.106 40.000 7.29 7.29 46.42 3.85
241 242 6.297830 ATGTAATCATGGGGAGAAAAACTCCT 60.298 38.462 14.25 0.00 46.39 3.69
242 243 7.752995 ATGTAATCATGGGGAGAAAAACTCCTT 60.753 37.037 14.25 4.13 46.39 3.36
264 265 9.676129 TCCTTAATCTGGGAGAAGAATAATAGT 57.324 33.333 0.00 0.00 0.00 2.12
272 273 8.732746 TGGGAGAAGAATAATAGTAGTTTTGC 57.267 34.615 0.00 0.00 0.00 3.68
273 274 8.325787 TGGGAGAAGAATAATAGTAGTTTTGCA 58.674 33.333 0.00 0.00 0.00 4.08
274 275 9.343539 GGGAGAAGAATAATAGTAGTTTTGCAT 57.656 33.333 0.00 0.00 0.00 3.96
280 281 9.461312 AGAATAATAGTAGTTTTGCATGTTGGA 57.539 29.630 0.00 0.00 0.00 3.53
281 282 9.503427 GAATAATAGTAGTTTTGCATGTTGGAC 57.497 33.333 0.00 0.00 0.00 4.02
282 283 8.807948 ATAATAGTAGTTTTGCATGTTGGACT 57.192 30.769 0.00 0.00 0.00 3.85
283 284 9.899661 ATAATAGTAGTTTTGCATGTTGGACTA 57.100 29.630 0.00 0.00 0.00 2.59
284 285 8.807948 AATAGTAGTTTTGCATGTTGGACTAT 57.192 30.769 0.00 0.00 30.77 2.12
285 286 6.500684 AGTAGTTTTGCATGTTGGACTATG 57.499 37.500 0.00 0.00 0.00 2.23
286 287 6.003950 AGTAGTTTTGCATGTTGGACTATGT 58.996 36.000 0.00 0.00 0.00 2.29
287 288 5.376854 AGTTTTGCATGTTGGACTATGTC 57.623 39.130 0.00 0.00 0.00 3.06
288 289 5.072741 AGTTTTGCATGTTGGACTATGTCT 58.927 37.500 0.00 0.00 32.47 3.41
289 290 5.536161 AGTTTTGCATGTTGGACTATGTCTT 59.464 36.000 0.00 0.00 32.47 3.01
290 291 5.375417 TTTGCATGTTGGACTATGTCTTG 57.625 39.130 0.00 0.00 32.47 3.02
291 292 4.019792 TGCATGTTGGACTATGTCTTGT 57.980 40.909 0.00 0.00 32.47 3.16
292 293 5.159273 TGCATGTTGGACTATGTCTTGTA 57.841 39.130 0.00 0.00 32.47 2.41
293 294 5.555966 TGCATGTTGGACTATGTCTTGTAA 58.444 37.500 0.00 0.00 32.47 2.41
294 295 5.643348 TGCATGTTGGACTATGTCTTGTAAG 59.357 40.000 0.00 0.00 32.47 2.34
295 296 5.643777 GCATGTTGGACTATGTCTTGTAAGT 59.356 40.000 0.00 0.00 32.47 2.24
296 297 6.816640 GCATGTTGGACTATGTCTTGTAAGTA 59.183 38.462 0.00 0.00 32.47 2.24
297 298 7.010552 GCATGTTGGACTATGTCTTGTAAGTAG 59.989 40.741 0.00 0.00 32.47 2.57
298 299 6.395629 TGTTGGACTATGTCTTGTAAGTAGC 58.604 40.000 0.00 0.00 32.47 3.58
299 300 5.593679 TGGACTATGTCTTGTAAGTAGCC 57.406 43.478 0.00 0.00 32.47 3.93
300 301 5.269991 TGGACTATGTCTTGTAAGTAGCCT 58.730 41.667 0.00 0.00 32.47 4.58
301 302 5.127194 TGGACTATGTCTTGTAAGTAGCCTG 59.873 44.000 0.00 0.00 32.47 4.85
302 303 5.360144 GGACTATGTCTTGTAAGTAGCCTGA 59.640 44.000 0.00 0.00 32.47 3.86
303 304 6.127423 GGACTATGTCTTGTAAGTAGCCTGAA 60.127 42.308 0.00 0.00 32.47 3.02
304 305 6.868622 ACTATGTCTTGTAAGTAGCCTGAAG 58.131 40.000 0.00 0.00 0.00 3.02
305 306 5.746990 ATGTCTTGTAAGTAGCCTGAAGT 57.253 39.130 0.00 0.00 0.00 3.01
306 307 4.883083 TGTCTTGTAAGTAGCCTGAAGTG 58.117 43.478 0.00 0.00 0.00 3.16
307 308 3.680458 GTCTTGTAAGTAGCCTGAAGTGC 59.320 47.826 0.00 0.00 0.00 4.40
308 309 3.323691 TCTTGTAAGTAGCCTGAAGTGCA 59.676 43.478 0.00 0.00 0.00 4.57
309 310 3.762407 TGTAAGTAGCCTGAAGTGCAA 57.238 42.857 0.00 0.00 0.00 4.08
310 311 4.079980 TGTAAGTAGCCTGAAGTGCAAA 57.920 40.909 0.00 0.00 0.00 3.68
311 312 4.456535 TGTAAGTAGCCTGAAGTGCAAAA 58.543 39.130 0.00 0.00 0.00 2.44
312 313 5.070001 TGTAAGTAGCCTGAAGTGCAAAAT 58.930 37.500 0.00 0.00 0.00 1.82
313 314 5.534654 TGTAAGTAGCCTGAAGTGCAAAATT 59.465 36.000 0.00 0.00 0.00 1.82
314 315 5.535753 AAGTAGCCTGAAGTGCAAAATTT 57.464 34.783 0.00 0.00 0.00 1.82
315 316 5.535753 AGTAGCCTGAAGTGCAAAATTTT 57.464 34.783 0.00 0.00 0.00 1.82
316 317 5.291971 AGTAGCCTGAAGTGCAAAATTTTG 58.708 37.500 23.74 23.74 41.03 2.44
317 318 4.405116 AGCCTGAAGTGCAAAATTTTGA 57.595 36.364 30.40 14.99 40.55 2.69
318 319 4.122046 AGCCTGAAGTGCAAAATTTTGAC 58.878 39.130 30.40 23.34 40.55 3.18
319 320 3.870419 GCCTGAAGTGCAAAATTTTGACA 59.130 39.130 30.40 23.55 40.55 3.58
320 321 4.332268 GCCTGAAGTGCAAAATTTTGACAA 59.668 37.500 30.40 14.44 40.55 3.18
321 322 5.727515 GCCTGAAGTGCAAAATTTTGACAAC 60.728 40.000 30.40 22.97 40.55 3.32
322 323 5.350914 CCTGAAGTGCAAAATTTTGACAACA 59.649 36.000 30.40 22.71 40.55 3.33
323 324 6.037391 CCTGAAGTGCAAAATTTTGACAACAT 59.963 34.615 30.40 18.22 40.55 2.71
324 325 7.224362 CCTGAAGTGCAAAATTTTGACAACATA 59.776 33.333 30.40 14.84 40.55 2.29
325 326 7.904094 TGAAGTGCAAAATTTTGACAACATAC 58.096 30.769 30.40 18.35 40.55 2.39
326 327 7.763528 TGAAGTGCAAAATTTTGACAACATACT 59.236 29.630 30.40 18.08 40.55 2.12
327 328 8.491331 AAGTGCAAAATTTTGACAACATACTT 57.509 26.923 30.40 21.44 40.55 2.24
328 329 7.908230 AGTGCAAAATTTTGACAACATACTTG 58.092 30.769 30.40 4.40 40.55 3.16
329 330 7.011295 AGTGCAAAATTTTGACAACATACTTGG 59.989 33.333 30.40 3.32 40.55 3.61
330 331 6.820656 TGCAAAATTTTGACAACATACTTGGT 59.179 30.769 30.40 0.00 40.55 3.67
331 332 7.010923 TGCAAAATTTTGACAACATACTTGGTC 59.989 33.333 30.40 10.20 40.55 4.02
332 333 7.518211 GCAAAATTTTGACAACATACTTGGTCC 60.518 37.037 30.40 6.34 40.55 4.46
333 334 6.723298 AATTTTGACAACATACTTGGTCCA 57.277 33.333 0.00 0.00 0.00 4.02
334 335 6.723298 ATTTTGACAACATACTTGGTCCAA 57.277 33.333 3.76 3.76 0.00 3.53
335 336 6.531503 TTTTGACAACATACTTGGTCCAAA 57.468 33.333 5.64 0.00 0.00 3.28
336 337 6.723298 TTTGACAACATACTTGGTCCAAAT 57.277 33.333 5.64 0.00 0.00 2.32
337 338 6.723298 TTGACAACATACTTGGTCCAAATT 57.277 33.333 5.64 0.00 0.00 1.82
338 339 6.083098 TGACAACATACTTGGTCCAAATTG 57.917 37.500 5.64 6.21 0.00 2.32
339 340 4.881920 ACAACATACTTGGTCCAAATTGC 58.118 39.130 5.64 0.00 0.00 3.56
340 341 4.343526 ACAACATACTTGGTCCAAATTGCA 59.656 37.500 5.64 0.00 0.00 4.08
341 342 4.789012 ACATACTTGGTCCAAATTGCAG 57.211 40.909 5.64 0.00 0.00 4.41
342 343 3.056607 ACATACTTGGTCCAAATTGCAGC 60.057 43.478 5.64 0.00 0.00 5.25
343 344 1.708341 ACTTGGTCCAAATTGCAGCT 58.292 45.000 5.64 0.00 0.00 4.24
344 345 2.875296 ACTTGGTCCAAATTGCAGCTA 58.125 42.857 5.64 0.00 0.00 3.32
345 346 2.821969 ACTTGGTCCAAATTGCAGCTAG 59.178 45.455 5.64 0.00 0.00 3.42
346 347 2.584835 TGGTCCAAATTGCAGCTAGT 57.415 45.000 0.00 0.00 0.00 2.57
347 348 3.712016 TGGTCCAAATTGCAGCTAGTA 57.288 42.857 0.00 0.00 0.00 1.82
348 349 4.027674 TGGTCCAAATTGCAGCTAGTAA 57.972 40.909 0.00 0.00 0.00 2.24
349 350 4.599041 TGGTCCAAATTGCAGCTAGTAAT 58.401 39.130 0.00 0.00 33.68 1.89
381 382 5.609423 TGGCAAAATGTAACATGCTCTTTT 58.391 33.333 0.00 0.00 38.79 2.27
387 388 9.421806 CAAAATGTAACATGCTCTTTTTATGGA 57.578 29.630 0.00 0.00 0.00 3.41
414 415 3.679980 CCAGGTGCGAATACTGCATATAC 59.320 47.826 0.00 0.00 45.34 1.47
543 552 2.229792 CAGTAGCAACAAGAGGCCAAA 58.770 47.619 5.01 0.00 0.00 3.28
698 712 0.806492 GACCTCGGCGGAGAATCAAC 60.806 60.000 21.85 3.86 43.27 3.18
716 730 4.377760 TCCCGGCCTCTCCTTCGT 62.378 66.667 0.00 0.00 0.00 3.85
734 748 0.109272 GTCGCATCTGAGTTCGTCCA 60.109 55.000 0.00 0.00 0.00 4.02
735 749 0.109272 TCGCATCTGAGTTCGTCCAC 60.109 55.000 0.00 0.00 0.00 4.02
736 750 0.109086 CGCATCTGAGTTCGTCCACT 60.109 55.000 0.00 0.00 0.00 4.00
737 751 1.670087 CGCATCTGAGTTCGTCCACTT 60.670 52.381 0.00 0.00 0.00 3.16
748 764 1.063806 CGTCCACTTCTTCTTGCTCG 58.936 55.000 0.00 0.00 0.00 5.03
775 791 4.891627 TTCATGCTCGAACAAGTTTCAA 57.108 36.364 0.00 0.00 0.00 2.69
776 792 5.437289 TTCATGCTCGAACAAGTTTCAAT 57.563 34.783 0.00 0.00 0.00 2.57
777 793 5.034554 TCATGCTCGAACAAGTTTCAATC 57.965 39.130 0.00 0.00 0.00 2.67
778 794 3.896648 TGCTCGAACAAGTTTCAATCC 57.103 42.857 0.00 0.00 0.00 3.01
812 828 1.226717 GAGTTCGCGGCGAGATTCT 60.227 57.895 25.02 19.90 37.14 2.40
825 842 2.094894 CGAGATTCTGTGCGCAAGATTT 59.905 45.455 14.00 8.27 43.02 2.17
841 858 3.705604 AGATTTTGAAGTGTTTGGTGCG 58.294 40.909 0.00 0.00 0.00 5.34
842 859 2.285827 TTTTGAAGTGTTTGGTGCGG 57.714 45.000 0.00 0.00 0.00 5.69
850 867 0.893270 TGTTTGGTGCGGAGATTGGG 60.893 55.000 0.00 0.00 0.00 4.12
866 883 6.350194 GGAGATTGGGGTGTAAAATTCTGTTC 60.350 42.308 0.00 0.00 0.00 3.18
989 1009 2.689034 AGGAGGAAAGGGAGCGGG 60.689 66.667 0.00 0.00 0.00 6.13
990 1010 2.687566 GGAGGAAAGGGAGCGGGA 60.688 66.667 0.00 0.00 0.00 5.14
991 1011 2.736826 GGAGGAAAGGGAGCGGGAG 61.737 68.421 0.00 0.00 0.00 4.30
1111 1137 4.034258 CAGCCAAGCAGCACCACG 62.034 66.667 0.00 0.00 34.23 4.94
1434 1469 2.659016 CAGAAGGACTGCAGCGGA 59.341 61.111 15.27 0.00 39.86 5.54
1449 1484 1.478510 AGCGGACTGGTTGAGATACTG 59.521 52.381 0.00 0.00 0.00 2.74
1632 1667 3.835790 CTTCGCCCCGAACAACCCA 62.836 63.158 0.00 0.00 41.05 4.51
1713 1748 0.104409 AGACAGGGTTCAGGGAGGTT 60.104 55.000 0.00 0.00 0.00 3.50
1803 1838 4.963953 CACTCGGTTTTCAATATCAATCGC 59.036 41.667 0.00 0.00 0.00 4.58
1806 1841 3.066064 CGGTTTTCAATATCAATCGCCCA 59.934 43.478 0.00 0.00 0.00 5.36
1845 1880 1.667236 CTCATGACCATAAGCCGCAA 58.333 50.000 0.00 0.00 0.00 4.85
2166 2201 3.132160 CGAGGAAGAGCTCGAGTACATA 58.868 50.000 15.13 0.00 44.85 2.29
2226 2261 1.541233 GGAGAACTGCCCATGATACGG 60.541 57.143 0.00 0.00 0.00 4.02
2244 2279 2.185608 GAGGCTTGCCTCCGAGTC 59.814 66.667 26.44 5.58 0.00 3.36
2250 2285 1.539280 GCTTGCCTCCGAGTCCTTATC 60.539 57.143 0.00 0.00 0.00 1.75
2253 2288 0.676736 GCCTCCGAGTCCTTATCCTG 59.323 60.000 0.00 0.00 0.00 3.86
2310 2345 2.295885 CTTTGCTTGGCAGAGATAGGG 58.704 52.381 4.37 0.00 42.32 3.53
2512 2553 1.106285 AAGATTCAATTGCTCGGGCC 58.894 50.000 3.94 0.00 37.74 5.80
2532 2573 2.592102 TGAAGGGCAGCTTCAGAAAT 57.408 45.000 2.54 0.00 36.09 2.17
2589 2630 2.474359 CGGTGATGATGAAGAAGATCGC 59.526 50.000 0.00 0.00 0.00 4.58
2607 2648 2.187073 CAAGGAGCCTTCCATGCAC 58.813 57.895 0.00 0.00 46.64 4.57
2628 2669 3.320541 ACTCATCTGATCGGTTCTCATCC 59.679 47.826 0.42 0.00 0.00 3.51
2682 2723 4.334481 ACCACCAGTTCAAAAACTAGTTCG 59.666 41.667 8.95 0.97 43.99 3.95
2920 2961 5.695816 CCATAGAGCAGCAGAGAAGAAATAC 59.304 44.000 0.00 0.00 0.00 1.89
2923 2964 4.465660 AGAGCAGCAGAGAAGAAATACTGA 59.534 41.667 0.00 0.00 32.90 3.41
2940 2981 3.820557 ACTGATACTGTTGCCTGTGTTT 58.179 40.909 0.00 0.00 0.00 2.83
3002 3072 7.126421 ACCTCAAGTTATGTTCATCAGGTAGAT 59.874 37.037 0.00 0.00 37.48 1.98
3035 3106 0.400213 GGTGATGGGTGTGGAGAACA 59.600 55.000 0.00 0.00 36.04 3.18
3095 3168 6.405216 CGAGTTTTGCATAATAAATGCTTGC 58.595 36.000 10.95 0.00 44.79 4.01
3195 3268 4.542662 GCTGTGAGCAGTGTAAATATGG 57.457 45.455 0.00 0.00 44.32 2.74
3197 3270 4.034510 GCTGTGAGCAGTGTAAATATGGAC 59.965 45.833 0.00 0.00 44.32 4.02
3201 3274 4.469586 TGAGCAGTGTAAATATGGACCTCA 59.530 41.667 0.00 0.00 0.00 3.86
3270 3343 4.747108 GTCTTGTGATGGTTCTGATATCCG 59.253 45.833 0.00 0.00 0.00 4.18
3279 3352 7.775093 TGATGGTTCTGATATCCGAATTTCTTT 59.225 33.333 12.05 0.00 0.00 2.52
3280 3353 9.273016 GATGGTTCTGATATCCGAATTTCTTTA 57.727 33.333 12.05 0.00 0.00 1.85
3281 3354 8.433421 TGGTTCTGATATCCGAATTTCTTTAC 57.567 34.615 12.05 0.00 0.00 2.01
3290 3363 9.931210 ATATCCGAATTTCTTTACGTTCAAATC 57.069 29.630 0.00 0.00 0.00 2.17
3291 3364 7.429636 TCCGAATTTCTTTACGTTCAAATCT 57.570 32.000 0.00 0.00 0.00 2.40
3292 3365 7.295201 TCCGAATTTCTTTACGTTCAAATCTG 58.705 34.615 0.00 0.00 0.00 2.90
3293 3366 7.171848 TCCGAATTTCTTTACGTTCAAATCTGA 59.828 33.333 0.00 0.00 0.00 3.27
3294 3367 7.268447 CCGAATTTCTTTACGTTCAAATCTGAC 59.732 37.037 0.00 0.00 0.00 3.51
3296 3369 6.831727 TTTCTTTACGTTCAAATCTGACGA 57.168 33.333 0.00 0.00 33.28 4.20
3297 3370 6.831727 TTCTTTACGTTCAAATCTGACGAA 57.168 33.333 0.00 0.00 33.28 3.85
3298 3371 6.448053 TCTTTACGTTCAAATCTGACGAAG 57.552 37.500 0.00 0.00 33.28 3.79
3299 3372 6.210796 TCTTTACGTTCAAATCTGACGAAGA 58.789 36.000 0.00 0.00 39.94 2.87
3300 3373 5.817616 TTACGTTCAAATCTGACGAAGAC 57.182 39.130 0.00 0.00 37.88 3.01
3301 3374 3.978687 ACGTTCAAATCTGACGAAGACT 58.021 40.909 1.90 0.00 37.88 3.24
3302 3375 5.117355 ACGTTCAAATCTGACGAAGACTA 57.883 39.130 1.90 0.00 37.88 2.59
3303 3376 5.526115 ACGTTCAAATCTGACGAAGACTAA 58.474 37.500 1.90 0.00 37.88 2.24
3304 3377 5.981315 ACGTTCAAATCTGACGAAGACTAAA 59.019 36.000 1.90 0.00 37.88 1.85
3305 3378 6.477688 ACGTTCAAATCTGACGAAGACTAAAA 59.522 34.615 1.90 0.00 37.88 1.52
3409 3590 3.127548 CCTTACTGCTGTTACCTTGCATG 59.872 47.826 0.09 0.00 36.07 4.06
3429 3610 3.889134 TTGCAGACAGGGAGCAGCG 62.889 63.158 0.00 0.00 39.72 5.18
3535 3716 2.422832 CGGACTGTACAGTACTCCCTTC 59.577 54.545 30.78 15.65 42.66 3.46
3550 3731 8.560903 AGTACTCCCTTCTGATGGATTTAAATT 58.439 33.333 10.93 0.00 0.00 1.82
3551 3732 9.847224 GTACTCCCTTCTGATGGATTTAAATTA 57.153 33.333 10.93 0.00 0.00 1.40
3642 3825 8.338259 CCATTAATAGTTGTTCATACTGTCTGC 58.662 37.037 0.00 0.00 0.00 4.26
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.538409 AACAATCAAAGCATTGGAAGATTAAC 57.462 30.769 1.24 0.00 37.98 2.01
1 2 7.541783 CGAACAATCAAAGCATTGGAAGATTAA 59.458 33.333 1.24 0.00 37.98 1.40
2 3 7.028962 CGAACAATCAAAGCATTGGAAGATTA 58.971 34.615 1.24 0.00 37.98 1.75
3 4 5.865552 CGAACAATCAAAGCATTGGAAGATT 59.134 36.000 1.24 0.00 37.98 2.40
4 5 5.404946 CGAACAATCAAAGCATTGGAAGAT 58.595 37.500 1.24 0.00 37.98 2.40
5 6 4.321156 CCGAACAATCAAAGCATTGGAAGA 60.321 41.667 1.24 0.00 37.98 2.87
6 7 3.922240 CCGAACAATCAAAGCATTGGAAG 59.078 43.478 1.24 0.00 37.98 3.46
7 8 3.860378 GCCGAACAATCAAAGCATTGGAA 60.860 43.478 1.24 0.00 37.98 3.53
8 9 2.352617 GCCGAACAATCAAAGCATTGGA 60.353 45.455 1.24 0.00 37.98 3.53
9 10 1.994779 GCCGAACAATCAAAGCATTGG 59.005 47.619 1.24 0.00 37.98 3.16
10 11 1.994779 GGCCGAACAATCAAAGCATTG 59.005 47.619 0.00 0.00 39.35 2.82
11 12 1.402720 CGGCCGAACAATCAAAGCATT 60.403 47.619 24.07 0.00 0.00 3.56
12 13 0.171007 CGGCCGAACAATCAAAGCAT 59.829 50.000 24.07 0.00 0.00 3.79
13 14 1.578926 CGGCCGAACAATCAAAGCA 59.421 52.632 24.07 0.00 0.00 3.91
14 15 1.154035 CCGGCCGAACAATCAAAGC 60.154 57.895 30.73 0.00 0.00 3.51
15 16 1.094785 ATCCGGCCGAACAATCAAAG 58.905 50.000 30.73 5.39 0.00 2.77
16 17 0.808125 CATCCGGCCGAACAATCAAA 59.192 50.000 30.73 0.00 0.00 2.69
17 18 1.653094 GCATCCGGCCGAACAATCAA 61.653 55.000 30.73 1.05 36.11 2.57
18 19 2.112198 GCATCCGGCCGAACAATCA 61.112 57.895 30.73 0.67 36.11 2.57
19 20 1.447317 ATGCATCCGGCCGAACAATC 61.447 55.000 30.73 10.86 43.89 2.67
20 21 1.037030 AATGCATCCGGCCGAACAAT 61.037 50.000 30.73 11.68 43.89 2.71
21 22 1.247419 AAATGCATCCGGCCGAACAA 61.247 50.000 30.73 9.56 43.89 2.83
22 23 1.677300 AAATGCATCCGGCCGAACA 60.677 52.632 30.73 18.95 43.89 3.18
23 24 1.226660 CAAATGCATCCGGCCGAAC 60.227 57.895 30.73 13.34 43.89 3.95
24 25 3.062500 GCAAATGCATCCGGCCGAA 62.063 57.895 30.73 6.63 43.89 4.30
25 26 3.517140 GCAAATGCATCCGGCCGA 61.517 61.111 30.73 13.82 43.89 5.54
26 27 2.561549 AAAGCAAATGCATCCGGCCG 62.562 55.000 21.04 21.04 45.16 6.13
27 28 0.391528 AAAAGCAAATGCATCCGGCC 60.392 50.000 8.28 0.00 45.16 6.13
28 29 0.722848 CAAAAGCAAATGCATCCGGC 59.277 50.000 8.28 4.23 45.16 6.13
29 30 2.083167 ACAAAAGCAAATGCATCCGG 57.917 45.000 8.28 0.00 45.16 5.14
30 31 3.122278 CAGAACAAAAGCAAATGCATCCG 59.878 43.478 8.28 0.00 45.16 4.18
31 32 3.120442 GCAGAACAAAAGCAAATGCATCC 60.120 43.478 8.28 0.00 45.16 3.51
32 33 3.744426 AGCAGAACAAAAGCAAATGCATC 59.256 39.130 8.28 0.00 45.16 3.91
33 34 3.735591 AGCAGAACAAAAGCAAATGCAT 58.264 36.364 8.28 0.00 45.16 3.96
34 35 3.182341 AGCAGAACAAAAGCAAATGCA 57.818 38.095 8.28 0.00 45.16 3.96
35 36 4.541085 AAAGCAGAACAAAAGCAAATGC 57.459 36.364 0.00 0.00 42.49 3.56
36 37 5.871539 ACAAAAGCAGAACAAAAGCAAATG 58.128 33.333 0.00 0.00 0.00 2.32
37 38 5.642919 TGACAAAAGCAGAACAAAAGCAAAT 59.357 32.000 0.00 0.00 0.00 2.32
38 39 4.993584 TGACAAAAGCAGAACAAAAGCAAA 59.006 33.333 0.00 0.00 0.00 3.68
39 40 4.388469 GTGACAAAAGCAGAACAAAAGCAA 59.612 37.500 0.00 0.00 0.00 3.91
40 41 3.925913 GTGACAAAAGCAGAACAAAAGCA 59.074 39.130 0.00 0.00 0.00 3.91
41 42 3.925913 TGTGACAAAAGCAGAACAAAAGC 59.074 39.130 0.00 0.00 0.00 3.51
42 43 5.501252 GCATGTGACAAAAGCAGAACAAAAG 60.501 40.000 0.00 0.00 0.00 2.27
43 44 4.329528 GCATGTGACAAAAGCAGAACAAAA 59.670 37.500 0.00 0.00 0.00 2.44
44 45 3.864583 GCATGTGACAAAAGCAGAACAAA 59.135 39.130 0.00 0.00 0.00 2.83
45 46 3.130869 AGCATGTGACAAAAGCAGAACAA 59.869 39.130 9.94 0.00 0.00 2.83
46 47 2.689471 AGCATGTGACAAAAGCAGAACA 59.311 40.909 9.94 0.00 0.00 3.18
47 48 3.360249 AGCATGTGACAAAAGCAGAAC 57.640 42.857 9.94 0.00 0.00 3.01
48 49 3.548616 CGAAGCATGTGACAAAAGCAGAA 60.549 43.478 9.94 0.00 0.00 3.02
49 50 2.031769 CGAAGCATGTGACAAAAGCAGA 60.032 45.455 9.94 0.00 0.00 4.26
50 51 2.313234 CGAAGCATGTGACAAAAGCAG 58.687 47.619 9.94 0.00 0.00 4.24
51 52 2.404265 CGAAGCATGTGACAAAAGCA 57.596 45.000 9.94 0.00 0.00 3.91
72 73 3.486383 GATCAAACACAACTCCCTTGGA 58.514 45.455 0.00 0.00 33.66 3.53
73 74 2.226437 CGATCAAACACAACTCCCTTGG 59.774 50.000 0.00 0.00 33.66 3.61
74 75 2.878406 ACGATCAAACACAACTCCCTTG 59.122 45.455 0.00 0.00 35.77 3.61
75 76 3.139077 GACGATCAAACACAACTCCCTT 58.861 45.455 0.00 0.00 0.00 3.95
76 77 2.550208 GGACGATCAAACACAACTCCCT 60.550 50.000 0.00 0.00 0.00 4.20
77 78 1.804748 GGACGATCAAACACAACTCCC 59.195 52.381 0.00 0.00 0.00 4.30
78 79 2.480419 CAGGACGATCAAACACAACTCC 59.520 50.000 0.00 0.00 0.00 3.85
79 80 2.480419 CCAGGACGATCAAACACAACTC 59.520 50.000 0.00 0.00 0.00 3.01
80 81 2.494059 CCAGGACGATCAAACACAACT 58.506 47.619 0.00 0.00 0.00 3.16
81 82 1.535462 CCCAGGACGATCAAACACAAC 59.465 52.381 0.00 0.00 0.00 3.32
82 83 1.544537 CCCCAGGACGATCAAACACAA 60.545 52.381 0.00 0.00 0.00 3.33
83 84 0.036164 CCCCAGGACGATCAAACACA 59.964 55.000 0.00 0.00 0.00 3.72
84 85 0.676782 CCCCCAGGACGATCAAACAC 60.677 60.000 0.00 0.00 33.47 3.32
85 86 0.838554 TCCCCCAGGACGATCAAACA 60.839 55.000 0.00 0.00 37.19 2.83
86 87 1.988015 TCCCCCAGGACGATCAAAC 59.012 57.895 0.00 0.00 37.19 2.93
87 88 4.571236 TCCCCCAGGACGATCAAA 57.429 55.556 0.00 0.00 37.19 2.69
96 97 1.285962 ACATTGAAGTCATCCCCCAGG 59.714 52.381 0.00 0.00 0.00 4.45
97 98 2.756760 CAACATTGAAGTCATCCCCCAG 59.243 50.000 0.00 0.00 0.00 4.45
98 99 2.557229 CCAACATTGAAGTCATCCCCCA 60.557 50.000 0.00 0.00 0.00 4.96
99 100 2.102578 CCAACATTGAAGTCATCCCCC 58.897 52.381 0.00 0.00 0.00 5.40
100 101 2.755103 GTCCAACATTGAAGTCATCCCC 59.245 50.000 0.00 0.00 0.00 4.81
101 102 3.420893 TGTCCAACATTGAAGTCATCCC 58.579 45.455 0.00 0.00 0.00 3.85
102 103 6.115446 TCTATGTCCAACATTGAAGTCATCC 58.885 40.000 0.00 0.00 39.88 3.51
103 104 7.615582 TTCTATGTCCAACATTGAAGTCATC 57.384 36.000 11.23 0.00 42.38 2.92
109 110 8.918202 AGTTAACTTCTATGTCCAACATTGAA 57.082 30.769 1.12 13.56 44.02 2.69
112 113 9.227777 GGTTAGTTAACTTCTATGTCCAACATT 57.772 33.333 14.49 0.00 36.94 2.71
113 114 7.827729 GGGTTAGTTAACTTCTATGTCCAACAT 59.172 37.037 14.49 0.00 38.12 2.71
114 115 7.016858 AGGGTTAGTTAACTTCTATGTCCAACA 59.983 37.037 14.49 0.00 36.47 3.33
115 116 7.392418 AGGGTTAGTTAACTTCTATGTCCAAC 58.608 38.462 14.49 8.33 36.47 3.77
116 117 7.563724 AGGGTTAGTTAACTTCTATGTCCAA 57.436 36.000 14.49 0.00 36.47 3.53
117 118 7.563724 AAGGGTTAGTTAACTTCTATGTCCA 57.436 36.000 14.49 0.00 36.47 4.02
127 128 9.516546 CAGAAGGAAATAAAGGGTTAGTTAACT 57.483 33.333 13.68 13.68 36.47 2.24
128 129 8.242053 GCAGAAGGAAATAAAGGGTTAGTTAAC 58.758 37.037 0.00 0.00 35.50 2.01
129 130 8.168058 AGCAGAAGGAAATAAAGGGTTAGTTAA 58.832 33.333 0.00 0.00 28.02 2.01
130 131 7.610305 CAGCAGAAGGAAATAAAGGGTTAGTTA 59.390 37.037 0.00 0.00 28.02 2.24
131 132 6.434340 CAGCAGAAGGAAATAAAGGGTTAGTT 59.566 38.462 0.00 0.00 30.44 2.24
132 133 5.946377 CAGCAGAAGGAAATAAAGGGTTAGT 59.054 40.000 0.00 0.00 0.00 2.24
133 134 5.163612 GCAGCAGAAGGAAATAAAGGGTTAG 60.164 44.000 0.00 0.00 0.00 2.34
134 135 4.705023 GCAGCAGAAGGAAATAAAGGGTTA 59.295 41.667 0.00 0.00 0.00 2.85
135 136 3.511540 GCAGCAGAAGGAAATAAAGGGTT 59.488 43.478 0.00 0.00 0.00 4.11
136 137 3.092301 GCAGCAGAAGGAAATAAAGGGT 58.908 45.455 0.00 0.00 0.00 4.34
137 138 3.091545 TGCAGCAGAAGGAAATAAAGGG 58.908 45.455 0.00 0.00 0.00 3.95
138 139 4.219288 AGTTGCAGCAGAAGGAAATAAAGG 59.781 41.667 2.55 0.00 0.00 3.11
139 140 5.048504 TCAGTTGCAGCAGAAGGAAATAAAG 60.049 40.000 2.55 0.00 0.00 1.85
140 141 4.826733 TCAGTTGCAGCAGAAGGAAATAAA 59.173 37.500 2.55 0.00 0.00 1.40
141 142 4.216257 GTCAGTTGCAGCAGAAGGAAATAA 59.784 41.667 2.55 0.00 0.00 1.40
142 143 3.753272 GTCAGTTGCAGCAGAAGGAAATA 59.247 43.478 2.55 0.00 0.00 1.40
143 144 2.555757 GTCAGTTGCAGCAGAAGGAAAT 59.444 45.455 2.55 0.00 0.00 2.17
144 145 1.949525 GTCAGTTGCAGCAGAAGGAAA 59.050 47.619 2.55 0.00 0.00 3.13
145 146 1.134128 TGTCAGTTGCAGCAGAAGGAA 60.134 47.619 2.55 0.00 0.00 3.36
146 147 0.469494 TGTCAGTTGCAGCAGAAGGA 59.531 50.000 2.55 0.00 0.00 3.36
147 148 0.873054 CTGTCAGTTGCAGCAGAAGG 59.127 55.000 2.55 0.00 0.00 3.46
148 149 1.875009 TCTGTCAGTTGCAGCAGAAG 58.125 50.000 2.55 1.66 35.36 2.85
149 150 2.556144 ATCTGTCAGTTGCAGCAGAA 57.444 45.000 2.55 0.00 40.71 3.02
150 151 2.556144 AATCTGTCAGTTGCAGCAGA 57.444 45.000 2.55 6.42 41.43 4.26
151 152 3.637998 AAAATCTGTCAGTTGCAGCAG 57.362 42.857 2.55 0.00 34.21 4.24
152 153 3.253188 GGTAAAATCTGTCAGTTGCAGCA 59.747 43.478 2.55 0.00 34.21 4.41
153 154 3.366374 GGGTAAAATCTGTCAGTTGCAGC 60.366 47.826 0.00 0.00 34.21 5.25
154 155 3.191371 GGGGTAAAATCTGTCAGTTGCAG 59.809 47.826 0.00 0.00 35.43 4.41
155 156 3.153919 GGGGTAAAATCTGTCAGTTGCA 58.846 45.455 0.00 0.00 0.00 4.08
156 157 2.492088 GGGGGTAAAATCTGTCAGTTGC 59.508 50.000 0.00 0.00 0.00 4.17
157 158 4.034285 AGGGGGTAAAATCTGTCAGTTG 57.966 45.455 0.00 0.00 0.00 3.16
158 159 4.741928 AAGGGGGTAAAATCTGTCAGTT 57.258 40.909 0.00 0.00 0.00 3.16
159 160 4.741928 AAAGGGGGTAAAATCTGTCAGT 57.258 40.909 0.00 0.00 0.00 3.41
160 161 4.220602 CCAAAAGGGGGTAAAATCTGTCAG 59.779 45.833 0.00 0.00 0.00 3.51
161 162 4.156477 CCAAAAGGGGGTAAAATCTGTCA 58.844 43.478 0.00 0.00 0.00 3.58
162 163 4.801330 CCAAAAGGGGGTAAAATCTGTC 57.199 45.455 0.00 0.00 0.00 3.51
176 177 2.570284 GCAACCGTCCCCCAAAAGG 61.570 63.158 0.00 0.00 0.00 3.11
177 178 1.112916 AAGCAACCGTCCCCCAAAAG 61.113 55.000 0.00 0.00 0.00 2.27
178 179 0.185416 TAAGCAACCGTCCCCCAAAA 59.815 50.000 0.00 0.00 0.00 2.44
179 180 0.406361 ATAAGCAACCGTCCCCCAAA 59.594 50.000 0.00 0.00 0.00 3.28
180 181 0.034863 GATAAGCAACCGTCCCCCAA 60.035 55.000 0.00 0.00 0.00 4.12
181 182 1.605453 GATAAGCAACCGTCCCCCA 59.395 57.895 0.00 0.00 0.00 4.96
182 183 1.523032 CGATAAGCAACCGTCCCCC 60.523 63.158 0.00 0.00 0.00 5.40
183 184 1.523032 CCGATAAGCAACCGTCCCC 60.523 63.158 0.00 0.00 0.00 4.81
184 185 0.392060 AACCGATAAGCAACCGTCCC 60.392 55.000 0.00 0.00 0.00 4.46
185 186 1.395954 GAAACCGATAAGCAACCGTCC 59.604 52.381 0.00 0.00 0.00 4.79
186 187 1.060122 CGAAACCGATAAGCAACCGTC 59.940 52.381 0.00 0.00 0.00 4.79
187 188 1.073177 CGAAACCGATAAGCAACCGT 58.927 50.000 0.00 0.00 0.00 4.83
188 189 1.073177 ACGAAACCGATAAGCAACCG 58.927 50.000 0.00 0.00 0.00 4.44
189 190 3.058777 TGAAACGAAACCGATAAGCAACC 60.059 43.478 0.00 0.00 0.00 3.77
190 191 4.136517 TGAAACGAAACCGATAAGCAAC 57.863 40.909 0.00 0.00 0.00 4.17
191 192 4.452795 TCATGAAACGAAACCGATAAGCAA 59.547 37.500 0.00 0.00 0.00 3.91
192 193 3.997681 TCATGAAACGAAACCGATAAGCA 59.002 39.130 0.00 0.00 0.00 3.91
193 194 4.593597 TCATGAAACGAAACCGATAAGC 57.406 40.909 0.00 0.00 0.00 3.09
194 195 7.021196 ACATTTCATGAAACGAAACCGATAAG 58.979 34.615 22.71 0.00 35.31 1.73
195 196 6.904498 ACATTTCATGAAACGAAACCGATAA 58.096 32.000 22.71 0.00 35.31 1.75
196 197 6.489127 ACATTTCATGAAACGAAACCGATA 57.511 33.333 22.71 0.00 35.31 2.92
197 198 5.371115 ACATTTCATGAAACGAAACCGAT 57.629 34.783 22.71 1.19 35.31 4.18
198 199 4.822036 ACATTTCATGAAACGAAACCGA 57.178 36.364 22.71 0.00 35.31 4.69
199 200 6.799441 TGATTACATTTCATGAAACGAAACCG 59.201 34.615 22.71 8.22 35.31 4.44
200 201 8.687824 ATGATTACATTTCATGAAACGAAACC 57.312 30.769 22.71 8.93 35.31 3.27
210 211 6.964807 TTCTCCCCATGATTACATTTCATG 57.035 37.500 6.67 6.67 46.49 3.07
211 212 7.976414 TTTTCTCCCCATGATTACATTTCAT 57.024 32.000 0.00 0.00 34.15 2.57
212 213 7.454380 AGTTTTTCTCCCCATGATTACATTTCA 59.546 33.333 0.00 0.00 34.15 2.69
213 214 7.840931 AGTTTTTCTCCCCATGATTACATTTC 58.159 34.615 0.00 0.00 34.15 2.17
214 215 7.797121 AGTTTTTCTCCCCATGATTACATTT 57.203 32.000 0.00 0.00 34.15 2.32
215 216 7.410120 GAGTTTTTCTCCCCATGATTACATT 57.590 36.000 0.00 0.00 37.22 2.71
229 230 6.993786 CTCCCAGATTAAGGAGTTTTTCTC 57.006 41.667 0.00 0.00 44.01 2.87
238 239 9.676129 ACTATTATTCTTCTCCCAGATTAAGGA 57.324 33.333 0.00 0.00 0.00 3.36
246 247 8.831550 GCAAAACTACTATTATTCTTCTCCCAG 58.168 37.037 0.00 0.00 0.00 4.45
247 248 8.325787 TGCAAAACTACTATTATTCTTCTCCCA 58.674 33.333 0.00 0.00 0.00 4.37
248 249 8.732746 TGCAAAACTACTATTATTCTTCTCCC 57.267 34.615 0.00 0.00 0.00 4.30
254 255 9.461312 TCCAACATGCAAAACTACTATTATTCT 57.539 29.630 0.00 0.00 0.00 2.40
255 256 9.503427 GTCCAACATGCAAAACTACTATTATTC 57.497 33.333 0.00 0.00 0.00 1.75
256 257 9.243105 AGTCCAACATGCAAAACTACTATTATT 57.757 29.630 0.00 0.00 0.00 1.40
257 258 8.807948 AGTCCAACATGCAAAACTACTATTAT 57.192 30.769 0.00 0.00 0.00 1.28
258 259 9.899661 ATAGTCCAACATGCAAAACTACTATTA 57.100 29.630 0.00 0.00 0.00 0.98
259 260 8.677300 CATAGTCCAACATGCAAAACTACTATT 58.323 33.333 0.00 0.00 0.00 1.73
260 261 7.829211 ACATAGTCCAACATGCAAAACTACTAT 59.171 33.333 0.00 0.00 0.00 2.12
261 262 7.165485 ACATAGTCCAACATGCAAAACTACTA 58.835 34.615 0.00 0.00 0.00 1.82
262 263 6.003950 ACATAGTCCAACATGCAAAACTACT 58.996 36.000 0.00 0.00 0.00 2.57
263 264 6.149474 AGACATAGTCCAACATGCAAAACTAC 59.851 38.462 0.00 0.00 32.18 2.73
264 265 6.237901 AGACATAGTCCAACATGCAAAACTA 58.762 36.000 0.00 0.00 32.18 2.24
265 266 5.072741 AGACATAGTCCAACATGCAAAACT 58.927 37.500 0.00 0.00 32.18 2.66
266 267 5.376854 AGACATAGTCCAACATGCAAAAC 57.623 39.130 0.00 0.00 32.18 2.43
267 268 5.301551 ACAAGACATAGTCCAACATGCAAAA 59.698 36.000 0.00 0.00 32.18 2.44
268 269 4.826733 ACAAGACATAGTCCAACATGCAAA 59.173 37.500 0.00 0.00 32.18 3.68
269 270 4.397420 ACAAGACATAGTCCAACATGCAA 58.603 39.130 0.00 0.00 32.18 4.08
270 271 4.019792 ACAAGACATAGTCCAACATGCA 57.980 40.909 0.00 0.00 32.18 3.96
271 272 5.643777 ACTTACAAGACATAGTCCAACATGC 59.356 40.000 0.00 0.00 32.18 4.06
272 273 7.010552 GCTACTTACAAGACATAGTCCAACATG 59.989 40.741 0.00 0.00 32.18 3.21
273 274 7.042335 GCTACTTACAAGACATAGTCCAACAT 58.958 38.462 0.00 0.00 32.18 2.71
274 275 6.395629 GCTACTTACAAGACATAGTCCAACA 58.604 40.000 0.00 0.00 32.18 3.33
275 276 5.811100 GGCTACTTACAAGACATAGTCCAAC 59.189 44.000 0.00 0.00 32.18 3.77
276 277 5.720041 AGGCTACTTACAAGACATAGTCCAA 59.280 40.000 0.00 0.00 32.18 3.53
277 278 5.127194 CAGGCTACTTACAAGACATAGTCCA 59.873 44.000 0.00 0.00 32.18 4.02
278 279 5.360144 TCAGGCTACTTACAAGACATAGTCC 59.640 44.000 0.00 0.00 32.18 3.85
279 280 6.452494 TCAGGCTACTTACAAGACATAGTC 57.548 41.667 0.00 0.00 0.00 2.59
280 281 6.437793 ACTTCAGGCTACTTACAAGACATAGT 59.562 38.462 0.00 0.00 0.00 2.12
281 282 6.754209 CACTTCAGGCTACTTACAAGACATAG 59.246 42.308 0.00 0.00 0.00 2.23
282 283 6.631016 CACTTCAGGCTACTTACAAGACATA 58.369 40.000 0.00 0.00 0.00 2.29
283 284 5.482908 CACTTCAGGCTACTTACAAGACAT 58.517 41.667 0.00 0.00 0.00 3.06
284 285 4.799586 GCACTTCAGGCTACTTACAAGACA 60.800 45.833 0.00 0.00 0.00 3.41
285 286 3.680458 GCACTTCAGGCTACTTACAAGAC 59.320 47.826 0.00 0.00 0.00 3.01
286 287 3.323691 TGCACTTCAGGCTACTTACAAGA 59.676 43.478 0.00 0.00 0.00 3.02
287 288 3.664107 TGCACTTCAGGCTACTTACAAG 58.336 45.455 0.00 0.00 0.00 3.16
288 289 3.762407 TGCACTTCAGGCTACTTACAA 57.238 42.857 0.00 0.00 0.00 2.41
289 290 3.762407 TTGCACTTCAGGCTACTTACA 57.238 42.857 0.00 0.00 0.00 2.41
290 291 5.629079 ATTTTGCACTTCAGGCTACTTAC 57.371 39.130 0.00 0.00 0.00 2.34
291 292 6.648879 AAATTTTGCACTTCAGGCTACTTA 57.351 33.333 0.00 0.00 0.00 2.24
292 293 5.535753 AAATTTTGCACTTCAGGCTACTT 57.464 34.783 0.00 0.00 0.00 2.24
293 294 5.068987 TCAAAATTTTGCACTTCAGGCTACT 59.931 36.000 23.36 0.00 38.05 2.57
294 295 5.175673 GTCAAAATTTTGCACTTCAGGCTAC 59.824 40.000 23.36 9.86 38.05 3.58
295 296 5.163468 TGTCAAAATTTTGCACTTCAGGCTA 60.163 36.000 23.36 1.76 38.05 3.93
296 297 4.122046 GTCAAAATTTTGCACTTCAGGCT 58.878 39.130 23.36 0.00 38.05 4.58
297 298 3.870419 TGTCAAAATTTTGCACTTCAGGC 59.130 39.130 23.36 2.56 38.05 4.85
298 299 5.350914 TGTTGTCAAAATTTTGCACTTCAGG 59.649 36.000 23.36 0.00 38.05 3.86
299 300 6.406093 TGTTGTCAAAATTTTGCACTTCAG 57.594 33.333 23.36 0.63 38.05 3.02
300 301 6.981762 ATGTTGTCAAAATTTTGCACTTCA 57.018 29.167 23.36 20.54 38.05 3.02
301 302 8.130307 AGTATGTTGTCAAAATTTTGCACTTC 57.870 30.769 23.36 17.19 38.05 3.01
302 303 8.389603 CAAGTATGTTGTCAAAATTTTGCACTT 58.610 29.630 23.36 18.01 38.05 3.16
303 304 7.011295 CCAAGTATGTTGTCAAAATTTTGCACT 59.989 33.333 23.36 14.37 38.05 4.40
304 305 7.125113 CCAAGTATGTTGTCAAAATTTTGCAC 58.875 34.615 23.36 20.57 38.05 4.57
305 306 6.820656 ACCAAGTATGTTGTCAAAATTTTGCA 59.179 30.769 23.36 20.39 38.05 4.08
306 307 7.245419 ACCAAGTATGTTGTCAAAATTTTGC 57.755 32.000 23.36 18.42 38.05 3.68
307 308 7.493971 TGGACCAAGTATGTTGTCAAAATTTTG 59.506 33.333 22.40 22.40 39.48 2.44
308 309 7.560368 TGGACCAAGTATGTTGTCAAAATTTT 58.440 30.769 0.00 0.00 0.00 1.82
309 310 7.118496 TGGACCAAGTATGTTGTCAAAATTT 57.882 32.000 0.00 0.00 0.00 1.82
310 311 6.723298 TGGACCAAGTATGTTGTCAAAATT 57.277 33.333 0.00 0.00 0.00 1.82
311 312 6.723298 TTGGACCAAGTATGTTGTCAAAAT 57.277 33.333 1.69 0.00 0.00 1.82
312 313 6.531503 TTTGGACCAAGTATGTTGTCAAAA 57.468 33.333 7.07 0.00 0.00 2.44
313 314 6.723298 ATTTGGACCAAGTATGTTGTCAAA 57.277 33.333 7.07 0.00 0.00 2.69
314 315 6.511416 CAATTTGGACCAAGTATGTTGTCAA 58.489 36.000 7.07 0.00 0.00 3.18
315 316 5.508825 GCAATTTGGACCAAGTATGTTGTCA 60.509 40.000 7.07 0.00 0.00 3.58
316 317 4.923281 GCAATTTGGACCAAGTATGTTGTC 59.077 41.667 7.07 3.27 0.00 3.18
317 318 4.343526 TGCAATTTGGACCAAGTATGTTGT 59.656 37.500 7.07 0.00 0.00 3.32
318 319 4.880759 TGCAATTTGGACCAAGTATGTTG 58.119 39.130 7.07 9.69 0.00 3.33
319 320 4.561326 GCTGCAATTTGGACCAAGTATGTT 60.561 41.667 7.07 0.00 0.00 2.71
320 321 3.056607 GCTGCAATTTGGACCAAGTATGT 60.057 43.478 7.07 0.00 0.00 2.29
321 322 3.194116 AGCTGCAATTTGGACCAAGTATG 59.806 43.478 7.07 8.97 0.00 2.39
322 323 3.434309 AGCTGCAATTTGGACCAAGTAT 58.566 40.909 7.07 0.00 0.00 2.12
323 324 2.875296 AGCTGCAATTTGGACCAAGTA 58.125 42.857 7.07 0.00 0.00 2.24
324 325 1.708341 AGCTGCAATTTGGACCAAGT 58.292 45.000 7.07 0.93 0.00 3.16
325 326 2.821969 ACTAGCTGCAATTTGGACCAAG 59.178 45.455 7.07 0.00 0.00 3.61
326 327 2.875296 ACTAGCTGCAATTTGGACCAA 58.125 42.857 1.69 1.69 0.00 3.67
327 328 2.584835 ACTAGCTGCAATTTGGACCA 57.415 45.000 1.02 0.00 0.00 4.02
328 329 4.399303 ACATTACTAGCTGCAATTTGGACC 59.601 41.667 1.02 0.00 0.00 4.46
329 330 5.449177 GGACATTACTAGCTGCAATTTGGAC 60.449 44.000 1.02 0.00 0.00 4.02
330 331 4.640201 GGACATTACTAGCTGCAATTTGGA 59.360 41.667 1.02 0.00 0.00 3.53
331 332 4.398988 TGGACATTACTAGCTGCAATTTGG 59.601 41.667 1.02 0.00 0.00 3.28
332 333 5.565592 TGGACATTACTAGCTGCAATTTG 57.434 39.130 1.02 0.00 0.00 2.32
333 334 6.588719 TTTGGACATTACTAGCTGCAATTT 57.411 33.333 1.02 0.00 0.00 1.82
334 335 6.588719 TTTTGGACATTACTAGCTGCAATT 57.411 33.333 1.02 0.00 0.00 2.32
335 336 6.406177 CCATTTTGGACATTACTAGCTGCAAT 60.406 38.462 1.02 0.00 40.96 3.56
336 337 5.105797 CCATTTTGGACATTACTAGCTGCAA 60.106 40.000 1.02 0.00 40.96 4.08
337 338 4.398988 CCATTTTGGACATTACTAGCTGCA 59.601 41.667 1.02 0.00 40.96 4.41
338 339 4.734695 GCCATTTTGGACATTACTAGCTGC 60.735 45.833 0.00 0.00 40.96 5.25
339 340 4.398988 TGCCATTTTGGACATTACTAGCTG 59.601 41.667 0.00 0.00 40.96 4.24
340 341 4.599041 TGCCATTTTGGACATTACTAGCT 58.401 39.130 0.00 0.00 40.96 3.32
341 342 4.981806 TGCCATTTTGGACATTACTAGC 57.018 40.909 0.00 0.00 40.96 3.42
342 343 7.818930 ACATTTTGCCATTTTGGACATTACTAG 59.181 33.333 0.00 0.00 40.96 2.57
343 344 7.675062 ACATTTTGCCATTTTGGACATTACTA 58.325 30.769 0.00 0.00 40.96 1.82
344 345 6.532826 ACATTTTGCCATTTTGGACATTACT 58.467 32.000 0.00 0.00 40.96 2.24
345 346 6.799926 ACATTTTGCCATTTTGGACATTAC 57.200 33.333 0.00 0.00 40.96 1.89
346 347 7.933577 TGTTACATTTTGCCATTTTGGACATTA 59.066 29.630 0.00 0.00 40.96 1.90
347 348 6.769822 TGTTACATTTTGCCATTTTGGACATT 59.230 30.769 0.00 0.00 40.96 2.71
348 349 6.294473 TGTTACATTTTGCCATTTTGGACAT 58.706 32.000 0.00 0.00 40.96 3.06
349 350 5.674525 TGTTACATTTTGCCATTTTGGACA 58.325 33.333 0.00 0.00 40.96 4.02
387 388 1.066143 CAGTATTCGCACCTGGAACCT 60.066 52.381 0.00 0.00 0.00 3.50
414 415 0.884704 CTTGTCACGGAACACCCTGG 60.885 60.000 0.00 0.00 0.00 4.45
543 552 2.610859 ATGCCGTCCCTCCCTTGT 60.611 61.111 0.00 0.00 0.00 3.16
698 712 3.532155 CGAAGGAGAGGCCGGGAG 61.532 72.222 2.18 0.00 43.43 4.30
704 718 1.590259 GATGCGACGAAGGAGAGGC 60.590 63.158 0.00 0.00 0.00 4.70
716 730 0.109272 GTGGACGAACTCAGATGCGA 60.109 55.000 0.00 0.00 0.00 5.10
773 789 0.317269 GCATCGCATCAACCGGATTG 60.317 55.000 9.46 9.58 39.94 2.67
775 791 1.893808 GGCATCGCATCAACCGGAT 60.894 57.895 9.46 0.00 36.39 4.18
776 792 2.513666 GGCATCGCATCAACCGGA 60.514 61.111 9.46 0.00 0.00 5.14
777 793 3.940640 CGGCATCGCATCAACCGG 61.941 66.667 0.00 0.00 40.18 5.28
778 794 2.874694 CTCGGCATCGCATCAACCG 61.875 63.158 0.00 0.00 45.15 4.44
801 817 3.918220 GCGCACAGAATCTCGCCG 61.918 66.667 0.30 0.00 41.53 6.46
812 828 2.098934 ACACTTCAAAATCTTGCGCACA 59.901 40.909 11.12 0.00 32.14 4.57
819 835 4.111916 CGCACCAAACACTTCAAAATCTT 58.888 39.130 0.00 0.00 0.00 2.40
825 842 1.021202 CTCCGCACCAAACACTTCAA 58.979 50.000 0.00 0.00 0.00 2.69
841 858 5.016831 ACAGAATTTTACACCCCAATCTCC 58.983 41.667 0.00 0.00 0.00 3.71
842 859 6.434340 AGAACAGAATTTTACACCCCAATCTC 59.566 38.462 0.00 0.00 0.00 2.75
1434 1469 2.188817 GACCCCAGTATCTCAACCAGT 58.811 52.381 0.00 0.00 0.00 4.00
1495 1530 4.263572 CCCGCCCATTATGCCGGA 62.264 66.667 19.10 0.00 43.20 5.14
1602 1637 2.110006 GCGAAGGGCTCCTCATCC 59.890 66.667 0.00 0.00 39.11 3.51
1632 1667 0.400594 CTCTCCCGGTGAACCCTTTT 59.599 55.000 0.00 0.00 0.00 2.27
1684 1719 1.461706 AACCCTGTCTCCCCTACCCT 61.462 60.000 0.00 0.00 0.00 4.34
1713 1748 3.617735 TCCAACAGGTACGCCGCA 61.618 61.111 0.00 0.00 40.50 5.69
1803 1838 4.114997 GTGCCGCCGTTCATTGGG 62.115 66.667 0.00 0.00 0.00 4.12
1806 1841 2.746277 GGAGTGCCGCCGTTCATT 60.746 61.111 0.00 0.00 0.00 2.57
1845 1880 4.623932 TGAAGCAATCTTACTGGTGACT 57.376 40.909 0.00 0.00 31.48 3.41
2124 2159 1.134694 GAACGGAATTGACGCCTGC 59.865 57.895 0.00 0.00 34.00 4.85
2166 2201 3.012518 CCTCATCGGATCAAGTTTGCTT 58.987 45.455 0.00 0.00 32.20 3.91
2205 2240 1.541233 CGTATCATGGGCAGTTCTCCC 60.541 57.143 0.00 0.00 44.17 4.30
2244 2279 3.629398 GGAAGATTGTGCACAGGATAAGG 59.371 47.826 20.59 0.00 0.00 2.69
2250 2285 2.189594 TGAGGAAGATTGTGCACAGG 57.810 50.000 20.59 0.00 0.00 4.00
2253 2288 2.783135 TCCTTGAGGAAGATTGTGCAC 58.217 47.619 10.75 10.75 42.18 4.57
2310 2345 3.137176 TGAATTCCCTGGTCATCATCTCC 59.863 47.826 2.27 0.00 0.00 3.71
2532 2573 0.318441 CCACGAGCTTTGTCAGAGGA 59.682 55.000 0.00 0.00 0.00 3.71
2607 2648 3.911868 GGATGAGAACCGATCAGATGAG 58.088 50.000 0.00 0.00 0.00 2.90
2746 2787 1.608025 GCTCATGTCCGACAACCTGAA 60.608 52.381 5.07 0.00 0.00 3.02
2920 2961 4.067896 AGAAACACAGGCAACAGTATCAG 58.932 43.478 0.00 0.00 41.41 2.90
2923 2964 5.451798 CCAAAAGAAACACAGGCAACAGTAT 60.452 40.000 0.00 0.00 41.41 2.12
3038 3109 8.735303 TTAACATAACTAGTAAACGTGCGTAA 57.265 30.769 0.00 0.00 0.00 3.18
3095 3168 7.633621 CATCTAACACAATATACACAAGCTGG 58.366 38.462 0.00 0.00 0.00 4.85
3195 3268 6.037610 CAGGTAAGCATTTTACATCTGAGGTC 59.962 42.308 0.00 0.00 0.00 3.85
3197 3270 5.297776 CCAGGTAAGCATTTTACATCTGAGG 59.702 44.000 0.00 0.00 0.00 3.86
3201 3274 5.570320 ACACCAGGTAAGCATTTTACATCT 58.430 37.500 0.00 0.00 0.00 2.90
3270 3343 8.007716 TCGTCAGATTTGAACGTAAAGAAATTC 58.992 33.333 0.00 0.00 34.49 2.17
3279 3352 5.117355 AGTCTTCGTCAGATTTGAACGTA 57.883 39.130 0.00 0.34 34.49 3.57
3280 3353 3.978687 AGTCTTCGTCAGATTTGAACGT 58.021 40.909 7.65 0.00 34.49 3.99
3281 3354 6.448053 TTTAGTCTTCGTCAGATTTGAACG 57.552 37.500 0.00 0.00 34.49 3.95
3290 3363 6.771188 AGACAACATTTTAGTCTTCGTCAG 57.229 37.500 0.00 0.00 39.45 3.51
3297 3370 8.143835 CCAATTCCAAAGACAACATTTTAGTCT 58.856 33.333 0.00 0.00 43.98 3.24
3298 3371 7.095649 GCCAATTCCAAAGACAACATTTTAGTC 60.096 37.037 0.00 0.00 0.00 2.59
3299 3372 6.705825 GCCAATTCCAAAGACAACATTTTAGT 59.294 34.615 0.00 0.00 0.00 2.24
3300 3373 6.705381 TGCCAATTCCAAAGACAACATTTTAG 59.295 34.615 0.00 0.00 0.00 1.85
3301 3374 6.586344 TGCCAATTCCAAAGACAACATTTTA 58.414 32.000 0.00 0.00 0.00 1.52
3302 3375 5.435291 TGCCAATTCCAAAGACAACATTTT 58.565 33.333 0.00 0.00 0.00 1.82
3303 3376 5.033589 TGCCAATTCCAAAGACAACATTT 57.966 34.783 0.00 0.00 0.00 2.32
3304 3377 4.686191 TGCCAATTCCAAAGACAACATT 57.314 36.364 0.00 0.00 0.00 2.71
3305 3378 4.101430 ACTTGCCAATTCCAAAGACAACAT 59.899 37.500 0.00 0.00 0.00 2.71
3341 3415 8.412456 TCTTACATTTTTCAACTGATCTTTGCA 58.588 29.630 0.00 0.00 0.00 4.08
3387 3568 2.778299 TGCAAGGTAACAGCAGTAAGG 58.222 47.619 0.00 0.00 43.60 2.69
3409 3590 1.375098 GCTGCTCCCTGTCTGCAATC 61.375 60.000 0.00 0.00 36.22 2.67
3429 3610 7.301054 GCATAATGCACCTGTGATTAAGATAC 58.699 38.462 0.51 0.00 44.26 2.24
3552 3733 9.298250 AGGTTATCTATCGCTGTTCTTTATCTA 57.702 33.333 0.00 0.00 0.00 1.98
3566 3747 3.650070 TCTGCTGCAGGTTATCTATCG 57.350 47.619 27.79 0.23 31.51 2.92
3637 3820 5.098211 GCTCAAATTAATCTTGGTGCAGAC 58.902 41.667 0.00 0.00 0.00 3.51
3642 3825 7.599621 TGTCAAATGCTCAAATTAATCTTGGTG 59.400 33.333 9.18 5.79 0.00 4.17
3769 3952 4.588528 ACAGCCAGGTGATTGTTTGTTTAT 59.411 37.500 3.46 0.00 0.00 1.40
3838 4021 9.535878 CAAGATCTACTTTATGTTCCCTCTTAC 57.464 37.037 0.00 0.00 36.61 2.34



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.