Multiple sequence alignment - TraesCS2D01G541800
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS2D01G541800 | chr2D | 100.000 | 3890 | 0 | 0 | 1 | 3890 | 620543066 | 620539177 | 0 | 7184 |
1 | TraesCS2D01G541800 | chr2B | 92.192 | 3599 | 175 | 50 | 354 | 3890 | 760952444 | 760948890 | 0 | 4992 |
2 | TraesCS2D01G541800 | chr2A | 92.948 | 3063 | 127 | 34 | 351 | 3365 | 752278812 | 752275791 | 0 | 4377 |
3 | TraesCS2D01G541800 | chr2A | 91.304 | 529 | 22 | 4 | 3364 | 3889 | 752275686 | 752275179 | 0 | 701 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS2D01G541800 | chr2D | 620539177 | 620543066 | 3889 | True | 7184 | 7184 | 100.000 | 1 | 3890 | 1 | chr2D.!!$R1 | 3889 |
1 | TraesCS2D01G541800 | chr2B | 760948890 | 760952444 | 3554 | True | 4992 | 4992 | 92.192 | 354 | 3890 | 1 | chr2B.!!$R1 | 3536 |
2 | TraesCS2D01G541800 | chr2A | 752275179 | 752278812 | 3633 | True | 2539 | 4377 | 92.126 | 351 | 3889 | 2 | chr2A.!!$R1 | 3538 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
199 | 200 | 0.034863 | TTGGGGGACGGTTGCTTATC | 60.035 | 55.0 | 0.0 | 0.0 | 0.0 | 1.75 | F |
736 | 750 | 0.109086 | CGCATCTGAGTTCGTCCACT | 60.109 | 55.0 | 0.0 | 0.0 | 0.0 | 4.00 | F |
1713 | 1748 | 0.104409 | AGACAGGGTTCAGGGAGGTT | 60.104 | 55.0 | 0.0 | 0.0 | 0.0 | 3.50 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1632 | 1667 | 0.400594 | CTCTCCCGGTGAACCCTTTT | 59.599 | 55.0 | 0.0 | 0.0 | 0.00 | 2.27 | R |
2532 | 2573 | 0.318441 | CCACGAGCTTTGTCAGAGGA | 59.682 | 55.0 | 0.0 | 0.0 | 0.00 | 3.71 | R |
3409 | 3590 | 1.375098 | GCTGCTCCCTGTCTGCAATC | 61.375 | 60.0 | 0.0 | 0.0 | 36.22 | 2.67 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
25 | 26 | 8.538409 | GTTAATCTTCCAATGCTTTGATTGTT | 57.462 | 30.769 | 13.58 | 5.02 | 34.60 | 2.83 |
26 | 27 | 8.650714 | GTTAATCTTCCAATGCTTTGATTGTTC | 58.349 | 33.333 | 13.58 | 0.00 | 34.60 | 3.18 |
27 | 28 | 4.797471 | TCTTCCAATGCTTTGATTGTTCG | 58.203 | 39.130 | 13.58 | 0.00 | 34.60 | 3.95 |
28 | 29 | 3.574284 | TCCAATGCTTTGATTGTTCGG | 57.426 | 42.857 | 13.58 | 0.00 | 34.60 | 4.30 |
29 | 30 | 1.994779 | CCAATGCTTTGATTGTTCGGC | 59.005 | 47.619 | 13.58 | 0.00 | 34.60 | 5.54 |
30 | 31 | 1.994779 | CAATGCTTTGATTGTTCGGCC | 59.005 | 47.619 | 6.48 | 0.00 | 34.60 | 6.13 |
31 | 32 | 0.171007 | ATGCTTTGATTGTTCGGCCG | 59.829 | 50.000 | 22.12 | 22.12 | 0.00 | 6.13 |
32 | 33 | 1.154035 | GCTTTGATTGTTCGGCCGG | 60.154 | 57.895 | 27.83 | 6.80 | 0.00 | 6.13 |
33 | 34 | 1.582610 | GCTTTGATTGTTCGGCCGGA | 61.583 | 55.000 | 27.83 | 16.16 | 0.00 | 5.14 |
34 | 35 | 1.094785 | CTTTGATTGTTCGGCCGGAT | 58.905 | 50.000 | 27.83 | 14.36 | 0.00 | 4.18 |
35 | 36 | 0.808125 | TTTGATTGTTCGGCCGGATG | 59.192 | 50.000 | 27.83 | 0.00 | 0.00 | 3.51 |
36 | 37 | 1.653094 | TTGATTGTTCGGCCGGATGC | 61.653 | 55.000 | 27.83 | 13.40 | 40.16 | 3.91 |
37 | 38 | 2.045438 | ATTGTTCGGCCGGATGCA | 60.045 | 55.556 | 27.83 | 15.94 | 43.89 | 3.96 |
38 | 39 | 1.447317 | GATTGTTCGGCCGGATGCAT | 61.447 | 55.000 | 27.83 | 10.19 | 43.89 | 3.96 |
39 | 40 | 1.037030 | ATTGTTCGGCCGGATGCATT | 61.037 | 50.000 | 27.83 | 12.14 | 43.89 | 3.56 |
40 | 41 | 1.247419 | TTGTTCGGCCGGATGCATTT | 61.247 | 50.000 | 27.83 | 0.00 | 43.89 | 2.32 |
41 | 42 | 1.226660 | GTTCGGCCGGATGCATTTG | 60.227 | 57.895 | 27.83 | 0.00 | 43.89 | 2.32 |
42 | 43 | 3.062500 | TTCGGCCGGATGCATTTGC | 62.063 | 57.895 | 27.83 | 3.97 | 43.89 | 3.68 |
43 | 44 | 3.520862 | CGGCCGGATGCATTTGCT | 61.521 | 61.111 | 20.10 | 0.00 | 43.89 | 3.91 |
44 | 45 | 2.894919 | GGCCGGATGCATTTGCTT | 59.105 | 55.556 | 5.05 | 0.00 | 43.89 | 3.91 |
45 | 46 | 1.218854 | GGCCGGATGCATTTGCTTT | 59.781 | 52.632 | 5.05 | 0.00 | 43.89 | 3.51 |
46 | 47 | 0.391528 | GGCCGGATGCATTTGCTTTT | 60.392 | 50.000 | 5.05 | 0.00 | 43.89 | 2.27 |
47 | 48 | 0.722848 | GCCGGATGCATTTGCTTTTG | 59.277 | 50.000 | 5.05 | 0.00 | 42.66 | 2.44 |
48 | 49 | 1.940752 | GCCGGATGCATTTGCTTTTGT | 60.941 | 47.619 | 5.05 | 0.00 | 42.66 | 2.83 |
49 | 50 | 2.415776 | CCGGATGCATTTGCTTTTGTT | 58.584 | 42.857 | 0.00 | 0.00 | 42.66 | 2.83 |
50 | 51 | 2.412770 | CCGGATGCATTTGCTTTTGTTC | 59.587 | 45.455 | 0.00 | 0.00 | 42.66 | 3.18 |
51 | 52 | 3.319755 | CGGATGCATTTGCTTTTGTTCT | 58.680 | 40.909 | 0.00 | 0.00 | 42.66 | 3.01 |
52 | 53 | 3.122278 | CGGATGCATTTGCTTTTGTTCTG | 59.878 | 43.478 | 0.00 | 0.00 | 42.66 | 3.02 |
53 | 54 | 3.120442 | GGATGCATTTGCTTTTGTTCTGC | 60.120 | 43.478 | 0.00 | 0.00 | 42.66 | 4.26 |
54 | 55 | 3.182341 | TGCATTTGCTTTTGTTCTGCT | 57.818 | 38.095 | 3.94 | 0.00 | 42.66 | 4.24 |
55 | 56 | 3.533547 | TGCATTTGCTTTTGTTCTGCTT | 58.466 | 36.364 | 3.94 | 0.00 | 42.66 | 3.91 |
56 | 57 | 3.940221 | TGCATTTGCTTTTGTTCTGCTTT | 59.060 | 34.783 | 3.94 | 0.00 | 42.66 | 3.51 |
57 | 58 | 4.395542 | TGCATTTGCTTTTGTTCTGCTTTT | 59.604 | 33.333 | 3.94 | 0.00 | 42.66 | 2.27 |
58 | 59 | 4.731480 | GCATTTGCTTTTGTTCTGCTTTTG | 59.269 | 37.500 | 0.00 | 0.00 | 38.21 | 2.44 |
59 | 60 | 5.674318 | GCATTTGCTTTTGTTCTGCTTTTGT | 60.674 | 36.000 | 0.00 | 0.00 | 38.21 | 2.83 |
60 | 61 | 5.529014 | TTTGCTTTTGTTCTGCTTTTGTC | 57.471 | 34.783 | 0.00 | 0.00 | 0.00 | 3.18 |
61 | 62 | 4.185467 | TGCTTTTGTTCTGCTTTTGTCA | 57.815 | 36.364 | 0.00 | 0.00 | 0.00 | 3.58 |
62 | 63 | 3.925913 | TGCTTTTGTTCTGCTTTTGTCAC | 59.074 | 39.130 | 0.00 | 0.00 | 0.00 | 3.67 |
63 | 64 | 3.925913 | GCTTTTGTTCTGCTTTTGTCACA | 59.074 | 39.130 | 0.00 | 0.00 | 0.00 | 3.58 |
64 | 65 | 4.567959 | GCTTTTGTTCTGCTTTTGTCACAT | 59.432 | 37.500 | 0.00 | 0.00 | 0.00 | 3.21 |
65 | 66 | 5.501252 | GCTTTTGTTCTGCTTTTGTCACATG | 60.501 | 40.000 | 0.00 | 0.00 | 0.00 | 3.21 |
66 | 67 | 3.082698 | TGTTCTGCTTTTGTCACATGC | 57.917 | 42.857 | 0.00 | 0.00 | 0.00 | 4.06 |
67 | 68 | 2.689471 | TGTTCTGCTTTTGTCACATGCT | 59.311 | 40.909 | 0.00 | 0.00 | 0.00 | 3.79 |
68 | 69 | 3.130869 | TGTTCTGCTTTTGTCACATGCTT | 59.869 | 39.130 | 0.00 | 0.00 | 0.00 | 3.91 |
69 | 70 | 3.631145 | TCTGCTTTTGTCACATGCTTC | 57.369 | 42.857 | 0.00 | 0.00 | 0.00 | 3.86 |
70 | 71 | 2.031769 | TCTGCTTTTGTCACATGCTTCG | 60.032 | 45.455 | 0.00 | 0.00 | 0.00 | 3.79 |
71 | 72 | 1.055338 | GCTTTTGTCACATGCTTCGC | 58.945 | 50.000 | 0.00 | 0.00 | 0.00 | 4.70 |
72 | 73 | 1.335324 | GCTTTTGTCACATGCTTCGCT | 60.335 | 47.619 | 0.00 | 0.00 | 0.00 | 4.93 |
73 | 74 | 2.578495 | CTTTTGTCACATGCTTCGCTC | 58.422 | 47.619 | 0.00 | 0.00 | 0.00 | 5.03 |
74 | 75 | 0.874390 | TTTGTCACATGCTTCGCTCC | 59.126 | 50.000 | 0.00 | 0.00 | 0.00 | 4.70 |
75 | 76 | 0.250252 | TTGTCACATGCTTCGCTCCA | 60.250 | 50.000 | 0.00 | 0.00 | 0.00 | 3.86 |
76 | 77 | 0.250252 | TGTCACATGCTTCGCTCCAA | 60.250 | 50.000 | 0.00 | 0.00 | 0.00 | 3.53 |
77 | 78 | 0.445436 | GTCACATGCTTCGCTCCAAG | 59.555 | 55.000 | 0.00 | 0.00 | 0.00 | 3.61 |
78 | 79 | 0.674581 | TCACATGCTTCGCTCCAAGG | 60.675 | 55.000 | 0.00 | 0.00 | 0.00 | 3.61 |
79 | 80 | 1.377725 | ACATGCTTCGCTCCAAGGG | 60.378 | 57.895 | 0.00 | 0.00 | 0.00 | 3.95 |
80 | 81 | 1.078214 | CATGCTTCGCTCCAAGGGA | 60.078 | 57.895 | 0.00 | 0.00 | 35.23 | 4.20 |
91 | 92 | 2.930950 | CTCCAAGGGAGTTGTGTTTGA | 58.069 | 47.619 | 4.08 | 0.00 | 44.25 | 2.69 |
92 | 93 | 3.490348 | CTCCAAGGGAGTTGTGTTTGAT | 58.510 | 45.455 | 4.08 | 0.00 | 44.25 | 2.57 |
93 | 94 | 3.486383 | TCCAAGGGAGTTGTGTTTGATC | 58.514 | 45.455 | 0.00 | 0.00 | 33.87 | 2.92 |
94 | 95 | 2.226437 | CCAAGGGAGTTGTGTTTGATCG | 59.774 | 50.000 | 0.00 | 0.00 | 33.87 | 3.69 |
95 | 96 | 2.878406 | CAAGGGAGTTGTGTTTGATCGT | 59.122 | 45.455 | 0.00 | 0.00 | 0.00 | 3.73 |
96 | 97 | 2.767505 | AGGGAGTTGTGTTTGATCGTC | 58.232 | 47.619 | 0.00 | 0.00 | 0.00 | 4.20 |
97 | 98 | 1.804748 | GGGAGTTGTGTTTGATCGTCC | 59.195 | 52.381 | 0.00 | 0.00 | 0.00 | 4.79 |
98 | 99 | 2.550208 | GGGAGTTGTGTTTGATCGTCCT | 60.550 | 50.000 | 0.00 | 0.00 | 0.00 | 3.85 |
99 | 100 | 2.480419 | GGAGTTGTGTTTGATCGTCCTG | 59.520 | 50.000 | 0.00 | 0.00 | 0.00 | 3.86 |
100 | 101 | 2.480419 | GAGTTGTGTTTGATCGTCCTGG | 59.520 | 50.000 | 0.00 | 0.00 | 0.00 | 4.45 |
101 | 102 | 1.535462 | GTTGTGTTTGATCGTCCTGGG | 59.465 | 52.381 | 0.00 | 0.00 | 0.00 | 4.45 |
102 | 103 | 0.036164 | TGTGTTTGATCGTCCTGGGG | 59.964 | 55.000 | 0.00 | 0.00 | 0.00 | 4.96 |
103 | 104 | 0.676782 | GTGTTTGATCGTCCTGGGGG | 60.677 | 60.000 | 0.00 | 0.00 | 0.00 | 5.40 |
104 | 105 | 0.838554 | TGTTTGATCGTCCTGGGGGA | 60.839 | 55.000 | 0.00 | 0.00 | 39.70 | 4.81 |
105 | 106 | 0.546598 | GTTTGATCGTCCTGGGGGAT | 59.453 | 55.000 | 0.00 | 0.00 | 44.33 | 3.85 |
112 | 113 | 2.696864 | GTCCTGGGGGATGACTTCA | 58.303 | 57.895 | 0.00 | 0.00 | 44.33 | 3.02 |
113 | 114 | 0.991920 | GTCCTGGGGGATGACTTCAA | 59.008 | 55.000 | 0.00 | 0.00 | 44.33 | 2.69 |
114 | 115 | 1.566231 | GTCCTGGGGGATGACTTCAAT | 59.434 | 52.381 | 0.00 | 0.00 | 44.33 | 2.57 |
115 | 116 | 1.565759 | TCCTGGGGGATGACTTCAATG | 59.434 | 52.381 | 0.00 | 0.00 | 36.57 | 2.82 |
116 | 117 | 1.285962 | CCTGGGGGATGACTTCAATGT | 59.714 | 52.381 | 0.00 | 0.00 | 33.58 | 2.71 |
117 | 118 | 2.291800 | CCTGGGGGATGACTTCAATGTT | 60.292 | 50.000 | 0.00 | 0.00 | 33.58 | 2.71 |
118 | 119 | 2.756760 | CTGGGGGATGACTTCAATGTTG | 59.243 | 50.000 | 0.00 | 0.00 | 0.00 | 3.33 |
119 | 120 | 2.102578 | GGGGGATGACTTCAATGTTGG | 58.897 | 52.381 | 0.00 | 0.00 | 0.00 | 3.77 |
120 | 121 | 2.291540 | GGGGGATGACTTCAATGTTGGA | 60.292 | 50.000 | 0.00 | 0.00 | 0.00 | 3.53 |
121 | 122 | 2.755103 | GGGGATGACTTCAATGTTGGAC | 59.245 | 50.000 | 0.00 | 0.00 | 0.00 | 4.02 |
122 | 123 | 3.420893 | GGGATGACTTCAATGTTGGACA | 58.579 | 45.455 | 0.00 | 0.00 | 0.00 | 4.02 |
123 | 124 | 4.019174 | GGGATGACTTCAATGTTGGACAT | 58.981 | 43.478 | 0.00 | 0.00 | 41.31 | 3.06 |
124 | 125 | 5.192927 | GGGATGACTTCAATGTTGGACATA | 58.807 | 41.667 | 0.00 | 0.00 | 37.97 | 2.29 |
125 | 126 | 5.297776 | GGGATGACTTCAATGTTGGACATAG | 59.702 | 44.000 | 0.00 | 0.00 | 37.97 | 2.23 |
126 | 127 | 6.115446 | GGATGACTTCAATGTTGGACATAGA | 58.885 | 40.000 | 0.00 | 0.00 | 37.97 | 1.98 |
127 | 128 | 6.599244 | GGATGACTTCAATGTTGGACATAGAA | 59.401 | 38.462 | 0.00 | 0.00 | 37.97 | 2.10 |
128 | 129 | 7.201679 | GGATGACTTCAATGTTGGACATAGAAG | 60.202 | 40.741 | 0.00 | 0.00 | 37.97 | 2.85 |
129 | 130 | 6.533730 | TGACTTCAATGTTGGACATAGAAGT | 58.466 | 36.000 | 0.00 | 0.00 | 44.67 | 3.01 |
130 | 131 | 6.998074 | TGACTTCAATGTTGGACATAGAAGTT | 59.002 | 34.615 | 0.00 | 0.00 | 42.79 | 2.66 |
131 | 132 | 8.154203 | TGACTTCAATGTTGGACATAGAAGTTA | 58.846 | 33.333 | 0.00 | 0.00 | 42.79 | 2.24 |
132 | 133 | 8.918202 | ACTTCAATGTTGGACATAGAAGTTAA | 57.082 | 30.769 | 0.00 | 0.00 | 40.71 | 2.01 |
133 | 134 | 8.784043 | ACTTCAATGTTGGACATAGAAGTTAAC | 58.216 | 33.333 | 0.00 | 0.00 | 40.71 | 2.01 |
134 | 135 | 8.918202 | TTCAATGTTGGACATAGAAGTTAACT | 57.082 | 30.769 | 1.12 | 1.12 | 37.97 | 2.24 |
138 | 139 | 8.788325 | ATGTTGGACATAGAAGTTAACTAACC | 57.212 | 34.615 | 8.92 | 1.65 | 36.99 | 2.85 |
139 | 140 | 7.163441 | TGTTGGACATAGAAGTTAACTAACCC | 58.837 | 38.462 | 8.92 | 4.66 | 36.88 | 4.11 |
140 | 141 | 7.016858 | TGTTGGACATAGAAGTTAACTAACCCT | 59.983 | 37.037 | 8.92 | 6.74 | 36.88 | 4.34 |
141 | 142 | 7.563724 | TGGACATAGAAGTTAACTAACCCTT | 57.436 | 36.000 | 8.92 | 0.00 | 36.88 | 3.95 |
142 | 143 | 7.981142 | TGGACATAGAAGTTAACTAACCCTTT | 58.019 | 34.615 | 8.92 | 0.00 | 36.88 | 3.11 |
143 | 144 | 9.103582 | TGGACATAGAAGTTAACTAACCCTTTA | 57.896 | 33.333 | 8.92 | 0.00 | 36.88 | 1.85 |
153 | 154 | 9.516546 | AGTTAACTAACCCTTTATTTCCTTCTG | 57.483 | 33.333 | 6.26 | 0.00 | 36.88 | 3.02 |
154 | 155 | 6.835819 | AACTAACCCTTTATTTCCTTCTGC | 57.164 | 37.500 | 0.00 | 0.00 | 0.00 | 4.26 |
155 | 156 | 6.140968 | ACTAACCCTTTATTTCCTTCTGCT | 57.859 | 37.500 | 0.00 | 0.00 | 0.00 | 4.24 |
156 | 157 | 5.946377 | ACTAACCCTTTATTTCCTTCTGCTG | 59.054 | 40.000 | 0.00 | 0.00 | 0.00 | 4.41 |
157 | 158 | 3.092301 | ACCCTTTATTTCCTTCTGCTGC | 58.908 | 45.455 | 0.00 | 0.00 | 0.00 | 5.25 |
158 | 159 | 3.091545 | CCCTTTATTTCCTTCTGCTGCA | 58.908 | 45.455 | 0.88 | 0.88 | 0.00 | 4.41 |
159 | 160 | 3.511146 | CCCTTTATTTCCTTCTGCTGCAA | 59.489 | 43.478 | 3.02 | 0.00 | 0.00 | 4.08 |
160 | 161 | 4.488879 | CCTTTATTTCCTTCTGCTGCAAC | 58.511 | 43.478 | 3.02 | 0.00 | 0.00 | 4.17 |
161 | 162 | 4.219288 | CCTTTATTTCCTTCTGCTGCAACT | 59.781 | 41.667 | 3.02 | 0.00 | 0.00 | 3.16 |
162 | 163 | 4.771590 | TTATTTCCTTCTGCTGCAACTG | 57.228 | 40.909 | 3.02 | 0.00 | 0.00 | 3.16 |
163 | 164 | 2.346766 | TTTCCTTCTGCTGCAACTGA | 57.653 | 45.000 | 3.02 | 0.00 | 0.00 | 3.41 |
164 | 165 | 1.597742 | TTCCTTCTGCTGCAACTGAC | 58.402 | 50.000 | 3.02 | 0.00 | 0.00 | 3.51 |
165 | 166 | 0.469494 | TCCTTCTGCTGCAACTGACA | 59.531 | 50.000 | 3.02 | 0.00 | 0.00 | 3.58 |
166 | 167 | 0.873054 | CCTTCTGCTGCAACTGACAG | 59.127 | 55.000 | 3.02 | 0.00 | 38.22 | 3.51 |
167 | 168 | 1.541889 | CCTTCTGCTGCAACTGACAGA | 60.542 | 52.381 | 10.08 | 0.00 | 37.32 | 3.41 |
168 | 169 | 2.424557 | CTTCTGCTGCAACTGACAGAT | 58.575 | 47.619 | 10.08 | 0.00 | 38.84 | 2.90 |
169 | 170 | 2.556144 | TCTGCTGCAACTGACAGATT | 57.444 | 45.000 | 10.08 | 0.00 | 37.32 | 2.40 |
170 | 171 | 2.854963 | TCTGCTGCAACTGACAGATTT | 58.145 | 42.857 | 10.08 | 0.00 | 37.32 | 2.17 |
171 | 172 | 3.216800 | TCTGCTGCAACTGACAGATTTT | 58.783 | 40.909 | 10.08 | 0.00 | 37.32 | 1.82 |
172 | 173 | 4.388485 | TCTGCTGCAACTGACAGATTTTA | 58.612 | 39.130 | 10.08 | 0.00 | 37.32 | 1.52 |
173 | 174 | 4.214119 | TCTGCTGCAACTGACAGATTTTAC | 59.786 | 41.667 | 10.08 | 0.00 | 37.32 | 2.01 |
174 | 175 | 3.253188 | TGCTGCAACTGACAGATTTTACC | 59.747 | 43.478 | 10.08 | 0.00 | 37.32 | 2.85 |
175 | 176 | 3.366374 | GCTGCAACTGACAGATTTTACCC | 60.366 | 47.826 | 10.08 | 0.00 | 37.32 | 3.69 |
176 | 177 | 3.153919 | TGCAACTGACAGATTTTACCCC | 58.846 | 45.455 | 10.08 | 0.00 | 0.00 | 4.95 |
177 | 178 | 2.492088 | GCAACTGACAGATTTTACCCCC | 59.508 | 50.000 | 10.08 | 0.00 | 0.00 | 5.40 |
178 | 179 | 3.814316 | GCAACTGACAGATTTTACCCCCT | 60.814 | 47.826 | 10.08 | 0.00 | 0.00 | 4.79 |
179 | 180 | 4.407365 | CAACTGACAGATTTTACCCCCTT | 58.593 | 43.478 | 10.08 | 0.00 | 0.00 | 3.95 |
180 | 181 | 4.741928 | ACTGACAGATTTTACCCCCTTT | 57.258 | 40.909 | 10.08 | 0.00 | 0.00 | 3.11 |
181 | 182 | 5.074746 | ACTGACAGATTTTACCCCCTTTT | 57.925 | 39.130 | 10.08 | 0.00 | 0.00 | 2.27 |
182 | 183 | 4.832823 | ACTGACAGATTTTACCCCCTTTTG | 59.167 | 41.667 | 10.08 | 0.00 | 0.00 | 2.44 |
183 | 184 | 4.156477 | TGACAGATTTTACCCCCTTTTGG | 58.844 | 43.478 | 0.00 | 0.00 | 39.97 | 3.28 |
193 | 194 | 3.771978 | CCTTTTGGGGGACGGTTG | 58.228 | 61.111 | 0.00 | 0.00 | 35.46 | 3.77 |
194 | 195 | 2.570284 | CCTTTTGGGGGACGGTTGC | 61.570 | 63.158 | 0.00 | 0.00 | 35.46 | 4.17 |
195 | 196 | 1.530655 | CTTTTGGGGGACGGTTGCT | 60.531 | 57.895 | 0.00 | 0.00 | 0.00 | 3.91 |
196 | 197 | 1.075896 | TTTTGGGGGACGGTTGCTT | 60.076 | 52.632 | 0.00 | 0.00 | 0.00 | 3.91 |
197 | 198 | 0.185416 | TTTTGGGGGACGGTTGCTTA | 59.815 | 50.000 | 0.00 | 0.00 | 0.00 | 3.09 |
198 | 199 | 0.406361 | TTTGGGGGACGGTTGCTTAT | 59.594 | 50.000 | 0.00 | 0.00 | 0.00 | 1.73 |
199 | 200 | 0.034863 | TTGGGGGACGGTTGCTTATC | 60.035 | 55.000 | 0.00 | 0.00 | 0.00 | 1.75 |
200 | 201 | 1.523032 | GGGGGACGGTTGCTTATCG | 60.523 | 63.158 | 0.00 | 0.00 | 36.12 | 2.92 |
201 | 202 | 1.523032 | GGGGACGGTTGCTTATCGG | 60.523 | 63.158 | 0.00 | 0.00 | 33.62 | 4.18 |
202 | 203 | 1.219935 | GGGACGGTTGCTTATCGGT | 59.780 | 57.895 | 0.00 | 0.00 | 33.62 | 4.69 |
203 | 204 | 0.392060 | GGGACGGTTGCTTATCGGTT | 60.392 | 55.000 | 0.00 | 0.00 | 33.62 | 4.44 |
204 | 205 | 1.445871 | GGACGGTTGCTTATCGGTTT | 58.554 | 50.000 | 0.00 | 0.00 | 33.62 | 3.27 |
205 | 206 | 1.395954 | GGACGGTTGCTTATCGGTTTC | 59.604 | 52.381 | 0.00 | 0.00 | 33.62 | 2.78 |
206 | 207 | 1.060122 | GACGGTTGCTTATCGGTTTCG | 59.940 | 52.381 | 0.00 | 0.00 | 33.62 | 3.46 |
207 | 208 | 1.073177 | CGGTTGCTTATCGGTTTCGT | 58.927 | 50.000 | 0.00 | 0.00 | 37.69 | 3.85 |
208 | 209 | 1.461897 | CGGTTGCTTATCGGTTTCGTT | 59.538 | 47.619 | 0.00 | 0.00 | 37.69 | 3.85 |
209 | 210 | 2.096119 | CGGTTGCTTATCGGTTTCGTTT | 60.096 | 45.455 | 0.00 | 0.00 | 37.69 | 3.60 |
210 | 211 | 3.485633 | GGTTGCTTATCGGTTTCGTTTC | 58.514 | 45.455 | 0.00 | 0.00 | 37.69 | 2.78 |
211 | 212 | 3.058777 | GGTTGCTTATCGGTTTCGTTTCA | 60.059 | 43.478 | 0.00 | 0.00 | 37.69 | 2.69 |
212 | 213 | 4.379082 | GGTTGCTTATCGGTTTCGTTTCAT | 60.379 | 41.667 | 0.00 | 0.00 | 37.69 | 2.57 |
213 | 214 | 4.335082 | TGCTTATCGGTTTCGTTTCATG | 57.665 | 40.909 | 0.00 | 0.00 | 37.69 | 3.07 |
214 | 215 | 3.997681 | TGCTTATCGGTTTCGTTTCATGA | 59.002 | 39.130 | 0.00 | 0.00 | 37.69 | 3.07 |
215 | 216 | 4.452795 | TGCTTATCGGTTTCGTTTCATGAA | 59.547 | 37.500 | 3.38 | 3.38 | 37.69 | 2.57 |
216 | 217 | 5.049336 | TGCTTATCGGTTTCGTTTCATGAAA | 60.049 | 36.000 | 16.91 | 16.91 | 37.69 | 2.69 |
217 | 218 | 6.027749 | GCTTATCGGTTTCGTTTCATGAAAT | 58.972 | 36.000 | 23.05 | 7.20 | 35.77 | 2.17 |
218 | 219 | 6.021468 | GCTTATCGGTTTCGTTTCATGAAATG | 60.021 | 38.462 | 27.51 | 27.51 | 40.92 | 2.32 |
219 | 220 | 4.822036 | TCGGTTTCGTTTCATGAAATGT | 57.178 | 36.364 | 30.25 | 0.00 | 40.62 | 2.71 |
220 | 221 | 5.926214 | TCGGTTTCGTTTCATGAAATGTA | 57.074 | 34.783 | 30.25 | 22.56 | 40.62 | 2.29 |
221 | 222 | 6.301687 | TCGGTTTCGTTTCATGAAATGTAA | 57.698 | 33.333 | 30.25 | 25.92 | 40.62 | 2.41 |
222 | 223 | 6.904498 | TCGGTTTCGTTTCATGAAATGTAAT | 58.096 | 32.000 | 30.25 | 0.00 | 40.62 | 1.89 |
223 | 224 | 7.018826 | TCGGTTTCGTTTCATGAAATGTAATC | 58.981 | 34.615 | 30.25 | 26.50 | 40.62 | 1.75 |
224 | 225 | 6.799441 | CGGTTTCGTTTCATGAAATGTAATCA | 59.201 | 34.615 | 30.25 | 14.88 | 46.80 | 2.57 |
225 | 226 | 7.484641 | CGGTTTCGTTTCATGAAATGTAATCAT | 59.515 | 33.333 | 30.25 | 0.00 | 46.80 | 2.45 |
233 | 234 | 6.964807 | CATGAAATGTAATCATGGGGAGAA | 57.035 | 37.500 | 8.31 | 0.00 | 46.65 | 2.87 |
234 | 235 | 7.350744 | CATGAAATGTAATCATGGGGAGAAA | 57.649 | 36.000 | 8.31 | 0.00 | 46.65 | 2.52 |
235 | 236 | 7.784037 | CATGAAATGTAATCATGGGGAGAAAA | 58.216 | 34.615 | 8.31 | 0.00 | 46.65 | 2.29 |
236 | 237 | 7.789202 | TGAAATGTAATCATGGGGAGAAAAA | 57.211 | 32.000 | 0.00 | 0.00 | 34.19 | 1.94 |
237 | 238 | 7.610865 | TGAAATGTAATCATGGGGAGAAAAAC | 58.389 | 34.615 | 0.00 | 0.00 | 34.19 | 2.43 |
238 | 239 | 7.454380 | TGAAATGTAATCATGGGGAGAAAAACT | 59.546 | 33.333 | 0.00 | 0.00 | 34.19 | 2.66 |
239 | 240 | 7.410120 | AATGTAATCATGGGGAGAAAAACTC | 57.590 | 36.000 | 0.00 | 0.00 | 38.32 | 3.01 |
240 | 241 | 5.893824 | ATGTAATCATGGGGAGAAAAACTCC | 59.106 | 40.000 | 7.29 | 7.29 | 46.42 | 3.85 |
241 | 242 | 6.297830 | ATGTAATCATGGGGAGAAAAACTCCT | 60.298 | 38.462 | 14.25 | 0.00 | 46.39 | 3.69 |
242 | 243 | 7.752995 | ATGTAATCATGGGGAGAAAAACTCCTT | 60.753 | 37.037 | 14.25 | 4.13 | 46.39 | 3.36 |
264 | 265 | 9.676129 | TCCTTAATCTGGGAGAAGAATAATAGT | 57.324 | 33.333 | 0.00 | 0.00 | 0.00 | 2.12 |
272 | 273 | 8.732746 | TGGGAGAAGAATAATAGTAGTTTTGC | 57.267 | 34.615 | 0.00 | 0.00 | 0.00 | 3.68 |
273 | 274 | 8.325787 | TGGGAGAAGAATAATAGTAGTTTTGCA | 58.674 | 33.333 | 0.00 | 0.00 | 0.00 | 4.08 |
274 | 275 | 9.343539 | GGGAGAAGAATAATAGTAGTTTTGCAT | 57.656 | 33.333 | 0.00 | 0.00 | 0.00 | 3.96 |
280 | 281 | 9.461312 | AGAATAATAGTAGTTTTGCATGTTGGA | 57.539 | 29.630 | 0.00 | 0.00 | 0.00 | 3.53 |
281 | 282 | 9.503427 | GAATAATAGTAGTTTTGCATGTTGGAC | 57.497 | 33.333 | 0.00 | 0.00 | 0.00 | 4.02 |
282 | 283 | 8.807948 | ATAATAGTAGTTTTGCATGTTGGACT | 57.192 | 30.769 | 0.00 | 0.00 | 0.00 | 3.85 |
283 | 284 | 9.899661 | ATAATAGTAGTTTTGCATGTTGGACTA | 57.100 | 29.630 | 0.00 | 0.00 | 0.00 | 2.59 |
284 | 285 | 8.807948 | AATAGTAGTTTTGCATGTTGGACTAT | 57.192 | 30.769 | 0.00 | 0.00 | 30.77 | 2.12 |
285 | 286 | 6.500684 | AGTAGTTTTGCATGTTGGACTATG | 57.499 | 37.500 | 0.00 | 0.00 | 0.00 | 2.23 |
286 | 287 | 6.003950 | AGTAGTTTTGCATGTTGGACTATGT | 58.996 | 36.000 | 0.00 | 0.00 | 0.00 | 2.29 |
287 | 288 | 5.376854 | AGTTTTGCATGTTGGACTATGTC | 57.623 | 39.130 | 0.00 | 0.00 | 0.00 | 3.06 |
288 | 289 | 5.072741 | AGTTTTGCATGTTGGACTATGTCT | 58.927 | 37.500 | 0.00 | 0.00 | 32.47 | 3.41 |
289 | 290 | 5.536161 | AGTTTTGCATGTTGGACTATGTCTT | 59.464 | 36.000 | 0.00 | 0.00 | 32.47 | 3.01 |
290 | 291 | 5.375417 | TTTGCATGTTGGACTATGTCTTG | 57.625 | 39.130 | 0.00 | 0.00 | 32.47 | 3.02 |
291 | 292 | 4.019792 | TGCATGTTGGACTATGTCTTGT | 57.980 | 40.909 | 0.00 | 0.00 | 32.47 | 3.16 |
292 | 293 | 5.159273 | TGCATGTTGGACTATGTCTTGTA | 57.841 | 39.130 | 0.00 | 0.00 | 32.47 | 2.41 |
293 | 294 | 5.555966 | TGCATGTTGGACTATGTCTTGTAA | 58.444 | 37.500 | 0.00 | 0.00 | 32.47 | 2.41 |
294 | 295 | 5.643348 | TGCATGTTGGACTATGTCTTGTAAG | 59.357 | 40.000 | 0.00 | 0.00 | 32.47 | 2.34 |
295 | 296 | 5.643777 | GCATGTTGGACTATGTCTTGTAAGT | 59.356 | 40.000 | 0.00 | 0.00 | 32.47 | 2.24 |
296 | 297 | 6.816640 | GCATGTTGGACTATGTCTTGTAAGTA | 59.183 | 38.462 | 0.00 | 0.00 | 32.47 | 2.24 |
297 | 298 | 7.010552 | GCATGTTGGACTATGTCTTGTAAGTAG | 59.989 | 40.741 | 0.00 | 0.00 | 32.47 | 2.57 |
298 | 299 | 6.395629 | TGTTGGACTATGTCTTGTAAGTAGC | 58.604 | 40.000 | 0.00 | 0.00 | 32.47 | 3.58 |
299 | 300 | 5.593679 | TGGACTATGTCTTGTAAGTAGCC | 57.406 | 43.478 | 0.00 | 0.00 | 32.47 | 3.93 |
300 | 301 | 5.269991 | TGGACTATGTCTTGTAAGTAGCCT | 58.730 | 41.667 | 0.00 | 0.00 | 32.47 | 4.58 |
301 | 302 | 5.127194 | TGGACTATGTCTTGTAAGTAGCCTG | 59.873 | 44.000 | 0.00 | 0.00 | 32.47 | 4.85 |
302 | 303 | 5.360144 | GGACTATGTCTTGTAAGTAGCCTGA | 59.640 | 44.000 | 0.00 | 0.00 | 32.47 | 3.86 |
303 | 304 | 6.127423 | GGACTATGTCTTGTAAGTAGCCTGAA | 60.127 | 42.308 | 0.00 | 0.00 | 32.47 | 3.02 |
304 | 305 | 6.868622 | ACTATGTCTTGTAAGTAGCCTGAAG | 58.131 | 40.000 | 0.00 | 0.00 | 0.00 | 3.02 |
305 | 306 | 5.746990 | ATGTCTTGTAAGTAGCCTGAAGT | 57.253 | 39.130 | 0.00 | 0.00 | 0.00 | 3.01 |
306 | 307 | 4.883083 | TGTCTTGTAAGTAGCCTGAAGTG | 58.117 | 43.478 | 0.00 | 0.00 | 0.00 | 3.16 |
307 | 308 | 3.680458 | GTCTTGTAAGTAGCCTGAAGTGC | 59.320 | 47.826 | 0.00 | 0.00 | 0.00 | 4.40 |
308 | 309 | 3.323691 | TCTTGTAAGTAGCCTGAAGTGCA | 59.676 | 43.478 | 0.00 | 0.00 | 0.00 | 4.57 |
309 | 310 | 3.762407 | TGTAAGTAGCCTGAAGTGCAA | 57.238 | 42.857 | 0.00 | 0.00 | 0.00 | 4.08 |
310 | 311 | 4.079980 | TGTAAGTAGCCTGAAGTGCAAA | 57.920 | 40.909 | 0.00 | 0.00 | 0.00 | 3.68 |
311 | 312 | 4.456535 | TGTAAGTAGCCTGAAGTGCAAAA | 58.543 | 39.130 | 0.00 | 0.00 | 0.00 | 2.44 |
312 | 313 | 5.070001 | TGTAAGTAGCCTGAAGTGCAAAAT | 58.930 | 37.500 | 0.00 | 0.00 | 0.00 | 1.82 |
313 | 314 | 5.534654 | TGTAAGTAGCCTGAAGTGCAAAATT | 59.465 | 36.000 | 0.00 | 0.00 | 0.00 | 1.82 |
314 | 315 | 5.535753 | AAGTAGCCTGAAGTGCAAAATTT | 57.464 | 34.783 | 0.00 | 0.00 | 0.00 | 1.82 |
315 | 316 | 5.535753 | AGTAGCCTGAAGTGCAAAATTTT | 57.464 | 34.783 | 0.00 | 0.00 | 0.00 | 1.82 |
316 | 317 | 5.291971 | AGTAGCCTGAAGTGCAAAATTTTG | 58.708 | 37.500 | 23.74 | 23.74 | 41.03 | 2.44 |
317 | 318 | 4.405116 | AGCCTGAAGTGCAAAATTTTGA | 57.595 | 36.364 | 30.40 | 14.99 | 40.55 | 2.69 |
318 | 319 | 4.122046 | AGCCTGAAGTGCAAAATTTTGAC | 58.878 | 39.130 | 30.40 | 23.34 | 40.55 | 3.18 |
319 | 320 | 3.870419 | GCCTGAAGTGCAAAATTTTGACA | 59.130 | 39.130 | 30.40 | 23.55 | 40.55 | 3.58 |
320 | 321 | 4.332268 | GCCTGAAGTGCAAAATTTTGACAA | 59.668 | 37.500 | 30.40 | 14.44 | 40.55 | 3.18 |
321 | 322 | 5.727515 | GCCTGAAGTGCAAAATTTTGACAAC | 60.728 | 40.000 | 30.40 | 22.97 | 40.55 | 3.32 |
322 | 323 | 5.350914 | CCTGAAGTGCAAAATTTTGACAACA | 59.649 | 36.000 | 30.40 | 22.71 | 40.55 | 3.33 |
323 | 324 | 6.037391 | CCTGAAGTGCAAAATTTTGACAACAT | 59.963 | 34.615 | 30.40 | 18.22 | 40.55 | 2.71 |
324 | 325 | 7.224362 | CCTGAAGTGCAAAATTTTGACAACATA | 59.776 | 33.333 | 30.40 | 14.84 | 40.55 | 2.29 |
325 | 326 | 7.904094 | TGAAGTGCAAAATTTTGACAACATAC | 58.096 | 30.769 | 30.40 | 18.35 | 40.55 | 2.39 |
326 | 327 | 7.763528 | TGAAGTGCAAAATTTTGACAACATACT | 59.236 | 29.630 | 30.40 | 18.08 | 40.55 | 2.12 |
327 | 328 | 8.491331 | AAGTGCAAAATTTTGACAACATACTT | 57.509 | 26.923 | 30.40 | 21.44 | 40.55 | 2.24 |
328 | 329 | 7.908230 | AGTGCAAAATTTTGACAACATACTTG | 58.092 | 30.769 | 30.40 | 4.40 | 40.55 | 3.16 |
329 | 330 | 7.011295 | AGTGCAAAATTTTGACAACATACTTGG | 59.989 | 33.333 | 30.40 | 3.32 | 40.55 | 3.61 |
330 | 331 | 6.820656 | TGCAAAATTTTGACAACATACTTGGT | 59.179 | 30.769 | 30.40 | 0.00 | 40.55 | 3.67 |
331 | 332 | 7.010923 | TGCAAAATTTTGACAACATACTTGGTC | 59.989 | 33.333 | 30.40 | 10.20 | 40.55 | 4.02 |
332 | 333 | 7.518211 | GCAAAATTTTGACAACATACTTGGTCC | 60.518 | 37.037 | 30.40 | 6.34 | 40.55 | 4.46 |
333 | 334 | 6.723298 | AATTTTGACAACATACTTGGTCCA | 57.277 | 33.333 | 0.00 | 0.00 | 0.00 | 4.02 |
334 | 335 | 6.723298 | ATTTTGACAACATACTTGGTCCAA | 57.277 | 33.333 | 3.76 | 3.76 | 0.00 | 3.53 |
335 | 336 | 6.531503 | TTTTGACAACATACTTGGTCCAAA | 57.468 | 33.333 | 5.64 | 0.00 | 0.00 | 3.28 |
336 | 337 | 6.723298 | TTTGACAACATACTTGGTCCAAAT | 57.277 | 33.333 | 5.64 | 0.00 | 0.00 | 2.32 |
337 | 338 | 6.723298 | TTGACAACATACTTGGTCCAAATT | 57.277 | 33.333 | 5.64 | 0.00 | 0.00 | 1.82 |
338 | 339 | 6.083098 | TGACAACATACTTGGTCCAAATTG | 57.917 | 37.500 | 5.64 | 6.21 | 0.00 | 2.32 |
339 | 340 | 4.881920 | ACAACATACTTGGTCCAAATTGC | 58.118 | 39.130 | 5.64 | 0.00 | 0.00 | 3.56 |
340 | 341 | 4.343526 | ACAACATACTTGGTCCAAATTGCA | 59.656 | 37.500 | 5.64 | 0.00 | 0.00 | 4.08 |
341 | 342 | 4.789012 | ACATACTTGGTCCAAATTGCAG | 57.211 | 40.909 | 5.64 | 0.00 | 0.00 | 4.41 |
342 | 343 | 3.056607 | ACATACTTGGTCCAAATTGCAGC | 60.057 | 43.478 | 5.64 | 0.00 | 0.00 | 5.25 |
343 | 344 | 1.708341 | ACTTGGTCCAAATTGCAGCT | 58.292 | 45.000 | 5.64 | 0.00 | 0.00 | 4.24 |
344 | 345 | 2.875296 | ACTTGGTCCAAATTGCAGCTA | 58.125 | 42.857 | 5.64 | 0.00 | 0.00 | 3.32 |
345 | 346 | 2.821969 | ACTTGGTCCAAATTGCAGCTAG | 59.178 | 45.455 | 5.64 | 0.00 | 0.00 | 3.42 |
346 | 347 | 2.584835 | TGGTCCAAATTGCAGCTAGT | 57.415 | 45.000 | 0.00 | 0.00 | 0.00 | 2.57 |
347 | 348 | 3.712016 | TGGTCCAAATTGCAGCTAGTA | 57.288 | 42.857 | 0.00 | 0.00 | 0.00 | 1.82 |
348 | 349 | 4.027674 | TGGTCCAAATTGCAGCTAGTAA | 57.972 | 40.909 | 0.00 | 0.00 | 0.00 | 2.24 |
349 | 350 | 4.599041 | TGGTCCAAATTGCAGCTAGTAAT | 58.401 | 39.130 | 0.00 | 0.00 | 33.68 | 1.89 |
381 | 382 | 5.609423 | TGGCAAAATGTAACATGCTCTTTT | 58.391 | 33.333 | 0.00 | 0.00 | 38.79 | 2.27 |
387 | 388 | 9.421806 | CAAAATGTAACATGCTCTTTTTATGGA | 57.578 | 29.630 | 0.00 | 0.00 | 0.00 | 3.41 |
414 | 415 | 3.679980 | CCAGGTGCGAATACTGCATATAC | 59.320 | 47.826 | 0.00 | 0.00 | 45.34 | 1.47 |
543 | 552 | 2.229792 | CAGTAGCAACAAGAGGCCAAA | 58.770 | 47.619 | 5.01 | 0.00 | 0.00 | 3.28 |
698 | 712 | 0.806492 | GACCTCGGCGGAGAATCAAC | 60.806 | 60.000 | 21.85 | 3.86 | 43.27 | 3.18 |
716 | 730 | 4.377760 | TCCCGGCCTCTCCTTCGT | 62.378 | 66.667 | 0.00 | 0.00 | 0.00 | 3.85 |
734 | 748 | 0.109272 | GTCGCATCTGAGTTCGTCCA | 60.109 | 55.000 | 0.00 | 0.00 | 0.00 | 4.02 |
735 | 749 | 0.109272 | TCGCATCTGAGTTCGTCCAC | 60.109 | 55.000 | 0.00 | 0.00 | 0.00 | 4.02 |
736 | 750 | 0.109086 | CGCATCTGAGTTCGTCCACT | 60.109 | 55.000 | 0.00 | 0.00 | 0.00 | 4.00 |
737 | 751 | 1.670087 | CGCATCTGAGTTCGTCCACTT | 60.670 | 52.381 | 0.00 | 0.00 | 0.00 | 3.16 |
748 | 764 | 1.063806 | CGTCCACTTCTTCTTGCTCG | 58.936 | 55.000 | 0.00 | 0.00 | 0.00 | 5.03 |
775 | 791 | 4.891627 | TTCATGCTCGAACAAGTTTCAA | 57.108 | 36.364 | 0.00 | 0.00 | 0.00 | 2.69 |
776 | 792 | 5.437289 | TTCATGCTCGAACAAGTTTCAAT | 57.563 | 34.783 | 0.00 | 0.00 | 0.00 | 2.57 |
777 | 793 | 5.034554 | TCATGCTCGAACAAGTTTCAATC | 57.965 | 39.130 | 0.00 | 0.00 | 0.00 | 2.67 |
778 | 794 | 3.896648 | TGCTCGAACAAGTTTCAATCC | 57.103 | 42.857 | 0.00 | 0.00 | 0.00 | 3.01 |
812 | 828 | 1.226717 | GAGTTCGCGGCGAGATTCT | 60.227 | 57.895 | 25.02 | 19.90 | 37.14 | 2.40 |
825 | 842 | 2.094894 | CGAGATTCTGTGCGCAAGATTT | 59.905 | 45.455 | 14.00 | 8.27 | 43.02 | 2.17 |
841 | 858 | 3.705604 | AGATTTTGAAGTGTTTGGTGCG | 58.294 | 40.909 | 0.00 | 0.00 | 0.00 | 5.34 |
842 | 859 | 2.285827 | TTTTGAAGTGTTTGGTGCGG | 57.714 | 45.000 | 0.00 | 0.00 | 0.00 | 5.69 |
850 | 867 | 0.893270 | TGTTTGGTGCGGAGATTGGG | 60.893 | 55.000 | 0.00 | 0.00 | 0.00 | 4.12 |
866 | 883 | 6.350194 | GGAGATTGGGGTGTAAAATTCTGTTC | 60.350 | 42.308 | 0.00 | 0.00 | 0.00 | 3.18 |
989 | 1009 | 2.689034 | AGGAGGAAAGGGAGCGGG | 60.689 | 66.667 | 0.00 | 0.00 | 0.00 | 6.13 |
990 | 1010 | 2.687566 | GGAGGAAAGGGAGCGGGA | 60.688 | 66.667 | 0.00 | 0.00 | 0.00 | 5.14 |
991 | 1011 | 2.736826 | GGAGGAAAGGGAGCGGGAG | 61.737 | 68.421 | 0.00 | 0.00 | 0.00 | 4.30 |
1111 | 1137 | 4.034258 | CAGCCAAGCAGCACCACG | 62.034 | 66.667 | 0.00 | 0.00 | 34.23 | 4.94 |
1434 | 1469 | 2.659016 | CAGAAGGACTGCAGCGGA | 59.341 | 61.111 | 15.27 | 0.00 | 39.86 | 5.54 |
1449 | 1484 | 1.478510 | AGCGGACTGGTTGAGATACTG | 59.521 | 52.381 | 0.00 | 0.00 | 0.00 | 2.74 |
1632 | 1667 | 3.835790 | CTTCGCCCCGAACAACCCA | 62.836 | 63.158 | 0.00 | 0.00 | 41.05 | 4.51 |
1713 | 1748 | 0.104409 | AGACAGGGTTCAGGGAGGTT | 60.104 | 55.000 | 0.00 | 0.00 | 0.00 | 3.50 |
1803 | 1838 | 4.963953 | CACTCGGTTTTCAATATCAATCGC | 59.036 | 41.667 | 0.00 | 0.00 | 0.00 | 4.58 |
1806 | 1841 | 3.066064 | CGGTTTTCAATATCAATCGCCCA | 59.934 | 43.478 | 0.00 | 0.00 | 0.00 | 5.36 |
1845 | 1880 | 1.667236 | CTCATGACCATAAGCCGCAA | 58.333 | 50.000 | 0.00 | 0.00 | 0.00 | 4.85 |
2166 | 2201 | 3.132160 | CGAGGAAGAGCTCGAGTACATA | 58.868 | 50.000 | 15.13 | 0.00 | 44.85 | 2.29 |
2226 | 2261 | 1.541233 | GGAGAACTGCCCATGATACGG | 60.541 | 57.143 | 0.00 | 0.00 | 0.00 | 4.02 |
2244 | 2279 | 2.185608 | GAGGCTTGCCTCCGAGTC | 59.814 | 66.667 | 26.44 | 5.58 | 0.00 | 3.36 |
2250 | 2285 | 1.539280 | GCTTGCCTCCGAGTCCTTATC | 60.539 | 57.143 | 0.00 | 0.00 | 0.00 | 1.75 |
2253 | 2288 | 0.676736 | GCCTCCGAGTCCTTATCCTG | 59.323 | 60.000 | 0.00 | 0.00 | 0.00 | 3.86 |
2310 | 2345 | 2.295885 | CTTTGCTTGGCAGAGATAGGG | 58.704 | 52.381 | 4.37 | 0.00 | 42.32 | 3.53 |
2512 | 2553 | 1.106285 | AAGATTCAATTGCTCGGGCC | 58.894 | 50.000 | 3.94 | 0.00 | 37.74 | 5.80 |
2532 | 2573 | 2.592102 | TGAAGGGCAGCTTCAGAAAT | 57.408 | 45.000 | 2.54 | 0.00 | 36.09 | 2.17 |
2589 | 2630 | 2.474359 | CGGTGATGATGAAGAAGATCGC | 59.526 | 50.000 | 0.00 | 0.00 | 0.00 | 4.58 |
2607 | 2648 | 2.187073 | CAAGGAGCCTTCCATGCAC | 58.813 | 57.895 | 0.00 | 0.00 | 46.64 | 4.57 |
2628 | 2669 | 3.320541 | ACTCATCTGATCGGTTCTCATCC | 59.679 | 47.826 | 0.42 | 0.00 | 0.00 | 3.51 |
2682 | 2723 | 4.334481 | ACCACCAGTTCAAAAACTAGTTCG | 59.666 | 41.667 | 8.95 | 0.97 | 43.99 | 3.95 |
2920 | 2961 | 5.695816 | CCATAGAGCAGCAGAGAAGAAATAC | 59.304 | 44.000 | 0.00 | 0.00 | 0.00 | 1.89 |
2923 | 2964 | 4.465660 | AGAGCAGCAGAGAAGAAATACTGA | 59.534 | 41.667 | 0.00 | 0.00 | 32.90 | 3.41 |
2940 | 2981 | 3.820557 | ACTGATACTGTTGCCTGTGTTT | 58.179 | 40.909 | 0.00 | 0.00 | 0.00 | 2.83 |
3002 | 3072 | 7.126421 | ACCTCAAGTTATGTTCATCAGGTAGAT | 59.874 | 37.037 | 0.00 | 0.00 | 37.48 | 1.98 |
3035 | 3106 | 0.400213 | GGTGATGGGTGTGGAGAACA | 59.600 | 55.000 | 0.00 | 0.00 | 36.04 | 3.18 |
3095 | 3168 | 6.405216 | CGAGTTTTGCATAATAAATGCTTGC | 58.595 | 36.000 | 10.95 | 0.00 | 44.79 | 4.01 |
3195 | 3268 | 4.542662 | GCTGTGAGCAGTGTAAATATGG | 57.457 | 45.455 | 0.00 | 0.00 | 44.32 | 2.74 |
3197 | 3270 | 4.034510 | GCTGTGAGCAGTGTAAATATGGAC | 59.965 | 45.833 | 0.00 | 0.00 | 44.32 | 4.02 |
3201 | 3274 | 4.469586 | TGAGCAGTGTAAATATGGACCTCA | 59.530 | 41.667 | 0.00 | 0.00 | 0.00 | 3.86 |
3270 | 3343 | 4.747108 | GTCTTGTGATGGTTCTGATATCCG | 59.253 | 45.833 | 0.00 | 0.00 | 0.00 | 4.18 |
3279 | 3352 | 7.775093 | TGATGGTTCTGATATCCGAATTTCTTT | 59.225 | 33.333 | 12.05 | 0.00 | 0.00 | 2.52 |
3280 | 3353 | 9.273016 | GATGGTTCTGATATCCGAATTTCTTTA | 57.727 | 33.333 | 12.05 | 0.00 | 0.00 | 1.85 |
3281 | 3354 | 8.433421 | TGGTTCTGATATCCGAATTTCTTTAC | 57.567 | 34.615 | 12.05 | 0.00 | 0.00 | 2.01 |
3290 | 3363 | 9.931210 | ATATCCGAATTTCTTTACGTTCAAATC | 57.069 | 29.630 | 0.00 | 0.00 | 0.00 | 2.17 |
3291 | 3364 | 7.429636 | TCCGAATTTCTTTACGTTCAAATCT | 57.570 | 32.000 | 0.00 | 0.00 | 0.00 | 2.40 |
3292 | 3365 | 7.295201 | TCCGAATTTCTTTACGTTCAAATCTG | 58.705 | 34.615 | 0.00 | 0.00 | 0.00 | 2.90 |
3293 | 3366 | 7.171848 | TCCGAATTTCTTTACGTTCAAATCTGA | 59.828 | 33.333 | 0.00 | 0.00 | 0.00 | 3.27 |
3294 | 3367 | 7.268447 | CCGAATTTCTTTACGTTCAAATCTGAC | 59.732 | 37.037 | 0.00 | 0.00 | 0.00 | 3.51 |
3296 | 3369 | 6.831727 | TTTCTTTACGTTCAAATCTGACGA | 57.168 | 33.333 | 0.00 | 0.00 | 33.28 | 4.20 |
3297 | 3370 | 6.831727 | TTCTTTACGTTCAAATCTGACGAA | 57.168 | 33.333 | 0.00 | 0.00 | 33.28 | 3.85 |
3298 | 3371 | 6.448053 | TCTTTACGTTCAAATCTGACGAAG | 57.552 | 37.500 | 0.00 | 0.00 | 33.28 | 3.79 |
3299 | 3372 | 6.210796 | TCTTTACGTTCAAATCTGACGAAGA | 58.789 | 36.000 | 0.00 | 0.00 | 39.94 | 2.87 |
3300 | 3373 | 5.817616 | TTACGTTCAAATCTGACGAAGAC | 57.182 | 39.130 | 0.00 | 0.00 | 37.88 | 3.01 |
3301 | 3374 | 3.978687 | ACGTTCAAATCTGACGAAGACT | 58.021 | 40.909 | 1.90 | 0.00 | 37.88 | 3.24 |
3302 | 3375 | 5.117355 | ACGTTCAAATCTGACGAAGACTA | 57.883 | 39.130 | 1.90 | 0.00 | 37.88 | 2.59 |
3303 | 3376 | 5.526115 | ACGTTCAAATCTGACGAAGACTAA | 58.474 | 37.500 | 1.90 | 0.00 | 37.88 | 2.24 |
3304 | 3377 | 5.981315 | ACGTTCAAATCTGACGAAGACTAAA | 59.019 | 36.000 | 1.90 | 0.00 | 37.88 | 1.85 |
3305 | 3378 | 6.477688 | ACGTTCAAATCTGACGAAGACTAAAA | 59.522 | 34.615 | 1.90 | 0.00 | 37.88 | 1.52 |
3409 | 3590 | 3.127548 | CCTTACTGCTGTTACCTTGCATG | 59.872 | 47.826 | 0.09 | 0.00 | 36.07 | 4.06 |
3429 | 3610 | 3.889134 | TTGCAGACAGGGAGCAGCG | 62.889 | 63.158 | 0.00 | 0.00 | 39.72 | 5.18 |
3535 | 3716 | 2.422832 | CGGACTGTACAGTACTCCCTTC | 59.577 | 54.545 | 30.78 | 15.65 | 42.66 | 3.46 |
3550 | 3731 | 8.560903 | AGTACTCCCTTCTGATGGATTTAAATT | 58.439 | 33.333 | 10.93 | 0.00 | 0.00 | 1.82 |
3551 | 3732 | 9.847224 | GTACTCCCTTCTGATGGATTTAAATTA | 57.153 | 33.333 | 10.93 | 0.00 | 0.00 | 1.40 |
3642 | 3825 | 8.338259 | CCATTAATAGTTGTTCATACTGTCTGC | 58.662 | 37.037 | 0.00 | 0.00 | 0.00 | 4.26 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
0 | 1 | 8.538409 | AACAATCAAAGCATTGGAAGATTAAC | 57.462 | 30.769 | 1.24 | 0.00 | 37.98 | 2.01 |
1 | 2 | 7.541783 | CGAACAATCAAAGCATTGGAAGATTAA | 59.458 | 33.333 | 1.24 | 0.00 | 37.98 | 1.40 |
2 | 3 | 7.028962 | CGAACAATCAAAGCATTGGAAGATTA | 58.971 | 34.615 | 1.24 | 0.00 | 37.98 | 1.75 |
3 | 4 | 5.865552 | CGAACAATCAAAGCATTGGAAGATT | 59.134 | 36.000 | 1.24 | 0.00 | 37.98 | 2.40 |
4 | 5 | 5.404946 | CGAACAATCAAAGCATTGGAAGAT | 58.595 | 37.500 | 1.24 | 0.00 | 37.98 | 2.40 |
5 | 6 | 4.321156 | CCGAACAATCAAAGCATTGGAAGA | 60.321 | 41.667 | 1.24 | 0.00 | 37.98 | 2.87 |
6 | 7 | 3.922240 | CCGAACAATCAAAGCATTGGAAG | 59.078 | 43.478 | 1.24 | 0.00 | 37.98 | 3.46 |
7 | 8 | 3.860378 | GCCGAACAATCAAAGCATTGGAA | 60.860 | 43.478 | 1.24 | 0.00 | 37.98 | 3.53 |
8 | 9 | 2.352617 | GCCGAACAATCAAAGCATTGGA | 60.353 | 45.455 | 1.24 | 0.00 | 37.98 | 3.53 |
9 | 10 | 1.994779 | GCCGAACAATCAAAGCATTGG | 59.005 | 47.619 | 1.24 | 0.00 | 37.98 | 3.16 |
10 | 11 | 1.994779 | GGCCGAACAATCAAAGCATTG | 59.005 | 47.619 | 0.00 | 0.00 | 39.35 | 2.82 |
11 | 12 | 1.402720 | CGGCCGAACAATCAAAGCATT | 60.403 | 47.619 | 24.07 | 0.00 | 0.00 | 3.56 |
12 | 13 | 0.171007 | CGGCCGAACAATCAAAGCAT | 59.829 | 50.000 | 24.07 | 0.00 | 0.00 | 3.79 |
13 | 14 | 1.578926 | CGGCCGAACAATCAAAGCA | 59.421 | 52.632 | 24.07 | 0.00 | 0.00 | 3.91 |
14 | 15 | 1.154035 | CCGGCCGAACAATCAAAGC | 60.154 | 57.895 | 30.73 | 0.00 | 0.00 | 3.51 |
15 | 16 | 1.094785 | ATCCGGCCGAACAATCAAAG | 58.905 | 50.000 | 30.73 | 5.39 | 0.00 | 2.77 |
16 | 17 | 0.808125 | CATCCGGCCGAACAATCAAA | 59.192 | 50.000 | 30.73 | 0.00 | 0.00 | 2.69 |
17 | 18 | 1.653094 | GCATCCGGCCGAACAATCAA | 61.653 | 55.000 | 30.73 | 1.05 | 36.11 | 2.57 |
18 | 19 | 2.112198 | GCATCCGGCCGAACAATCA | 61.112 | 57.895 | 30.73 | 0.67 | 36.11 | 2.57 |
19 | 20 | 1.447317 | ATGCATCCGGCCGAACAATC | 61.447 | 55.000 | 30.73 | 10.86 | 43.89 | 2.67 |
20 | 21 | 1.037030 | AATGCATCCGGCCGAACAAT | 61.037 | 50.000 | 30.73 | 11.68 | 43.89 | 2.71 |
21 | 22 | 1.247419 | AAATGCATCCGGCCGAACAA | 61.247 | 50.000 | 30.73 | 9.56 | 43.89 | 2.83 |
22 | 23 | 1.677300 | AAATGCATCCGGCCGAACA | 60.677 | 52.632 | 30.73 | 18.95 | 43.89 | 3.18 |
23 | 24 | 1.226660 | CAAATGCATCCGGCCGAAC | 60.227 | 57.895 | 30.73 | 13.34 | 43.89 | 3.95 |
24 | 25 | 3.062500 | GCAAATGCATCCGGCCGAA | 62.063 | 57.895 | 30.73 | 6.63 | 43.89 | 4.30 |
25 | 26 | 3.517140 | GCAAATGCATCCGGCCGA | 61.517 | 61.111 | 30.73 | 13.82 | 43.89 | 5.54 |
26 | 27 | 2.561549 | AAAGCAAATGCATCCGGCCG | 62.562 | 55.000 | 21.04 | 21.04 | 45.16 | 6.13 |
27 | 28 | 0.391528 | AAAAGCAAATGCATCCGGCC | 60.392 | 50.000 | 8.28 | 0.00 | 45.16 | 6.13 |
28 | 29 | 0.722848 | CAAAAGCAAATGCATCCGGC | 59.277 | 50.000 | 8.28 | 4.23 | 45.16 | 6.13 |
29 | 30 | 2.083167 | ACAAAAGCAAATGCATCCGG | 57.917 | 45.000 | 8.28 | 0.00 | 45.16 | 5.14 |
30 | 31 | 3.122278 | CAGAACAAAAGCAAATGCATCCG | 59.878 | 43.478 | 8.28 | 0.00 | 45.16 | 4.18 |
31 | 32 | 3.120442 | GCAGAACAAAAGCAAATGCATCC | 60.120 | 43.478 | 8.28 | 0.00 | 45.16 | 3.51 |
32 | 33 | 3.744426 | AGCAGAACAAAAGCAAATGCATC | 59.256 | 39.130 | 8.28 | 0.00 | 45.16 | 3.91 |
33 | 34 | 3.735591 | AGCAGAACAAAAGCAAATGCAT | 58.264 | 36.364 | 8.28 | 0.00 | 45.16 | 3.96 |
34 | 35 | 3.182341 | AGCAGAACAAAAGCAAATGCA | 57.818 | 38.095 | 8.28 | 0.00 | 45.16 | 3.96 |
35 | 36 | 4.541085 | AAAGCAGAACAAAAGCAAATGC | 57.459 | 36.364 | 0.00 | 0.00 | 42.49 | 3.56 |
36 | 37 | 5.871539 | ACAAAAGCAGAACAAAAGCAAATG | 58.128 | 33.333 | 0.00 | 0.00 | 0.00 | 2.32 |
37 | 38 | 5.642919 | TGACAAAAGCAGAACAAAAGCAAAT | 59.357 | 32.000 | 0.00 | 0.00 | 0.00 | 2.32 |
38 | 39 | 4.993584 | TGACAAAAGCAGAACAAAAGCAAA | 59.006 | 33.333 | 0.00 | 0.00 | 0.00 | 3.68 |
39 | 40 | 4.388469 | GTGACAAAAGCAGAACAAAAGCAA | 59.612 | 37.500 | 0.00 | 0.00 | 0.00 | 3.91 |
40 | 41 | 3.925913 | GTGACAAAAGCAGAACAAAAGCA | 59.074 | 39.130 | 0.00 | 0.00 | 0.00 | 3.91 |
41 | 42 | 3.925913 | TGTGACAAAAGCAGAACAAAAGC | 59.074 | 39.130 | 0.00 | 0.00 | 0.00 | 3.51 |
42 | 43 | 5.501252 | GCATGTGACAAAAGCAGAACAAAAG | 60.501 | 40.000 | 0.00 | 0.00 | 0.00 | 2.27 |
43 | 44 | 4.329528 | GCATGTGACAAAAGCAGAACAAAA | 59.670 | 37.500 | 0.00 | 0.00 | 0.00 | 2.44 |
44 | 45 | 3.864583 | GCATGTGACAAAAGCAGAACAAA | 59.135 | 39.130 | 0.00 | 0.00 | 0.00 | 2.83 |
45 | 46 | 3.130869 | AGCATGTGACAAAAGCAGAACAA | 59.869 | 39.130 | 9.94 | 0.00 | 0.00 | 2.83 |
46 | 47 | 2.689471 | AGCATGTGACAAAAGCAGAACA | 59.311 | 40.909 | 9.94 | 0.00 | 0.00 | 3.18 |
47 | 48 | 3.360249 | AGCATGTGACAAAAGCAGAAC | 57.640 | 42.857 | 9.94 | 0.00 | 0.00 | 3.01 |
48 | 49 | 3.548616 | CGAAGCATGTGACAAAAGCAGAA | 60.549 | 43.478 | 9.94 | 0.00 | 0.00 | 3.02 |
49 | 50 | 2.031769 | CGAAGCATGTGACAAAAGCAGA | 60.032 | 45.455 | 9.94 | 0.00 | 0.00 | 4.26 |
50 | 51 | 2.313234 | CGAAGCATGTGACAAAAGCAG | 58.687 | 47.619 | 9.94 | 0.00 | 0.00 | 4.24 |
51 | 52 | 2.404265 | CGAAGCATGTGACAAAAGCA | 57.596 | 45.000 | 9.94 | 0.00 | 0.00 | 3.91 |
72 | 73 | 3.486383 | GATCAAACACAACTCCCTTGGA | 58.514 | 45.455 | 0.00 | 0.00 | 33.66 | 3.53 |
73 | 74 | 2.226437 | CGATCAAACACAACTCCCTTGG | 59.774 | 50.000 | 0.00 | 0.00 | 33.66 | 3.61 |
74 | 75 | 2.878406 | ACGATCAAACACAACTCCCTTG | 59.122 | 45.455 | 0.00 | 0.00 | 35.77 | 3.61 |
75 | 76 | 3.139077 | GACGATCAAACACAACTCCCTT | 58.861 | 45.455 | 0.00 | 0.00 | 0.00 | 3.95 |
76 | 77 | 2.550208 | GGACGATCAAACACAACTCCCT | 60.550 | 50.000 | 0.00 | 0.00 | 0.00 | 4.20 |
77 | 78 | 1.804748 | GGACGATCAAACACAACTCCC | 59.195 | 52.381 | 0.00 | 0.00 | 0.00 | 4.30 |
78 | 79 | 2.480419 | CAGGACGATCAAACACAACTCC | 59.520 | 50.000 | 0.00 | 0.00 | 0.00 | 3.85 |
79 | 80 | 2.480419 | CCAGGACGATCAAACACAACTC | 59.520 | 50.000 | 0.00 | 0.00 | 0.00 | 3.01 |
80 | 81 | 2.494059 | CCAGGACGATCAAACACAACT | 58.506 | 47.619 | 0.00 | 0.00 | 0.00 | 3.16 |
81 | 82 | 1.535462 | CCCAGGACGATCAAACACAAC | 59.465 | 52.381 | 0.00 | 0.00 | 0.00 | 3.32 |
82 | 83 | 1.544537 | CCCCAGGACGATCAAACACAA | 60.545 | 52.381 | 0.00 | 0.00 | 0.00 | 3.33 |
83 | 84 | 0.036164 | CCCCAGGACGATCAAACACA | 59.964 | 55.000 | 0.00 | 0.00 | 0.00 | 3.72 |
84 | 85 | 0.676782 | CCCCCAGGACGATCAAACAC | 60.677 | 60.000 | 0.00 | 0.00 | 33.47 | 3.32 |
85 | 86 | 0.838554 | TCCCCCAGGACGATCAAACA | 60.839 | 55.000 | 0.00 | 0.00 | 37.19 | 2.83 |
86 | 87 | 1.988015 | TCCCCCAGGACGATCAAAC | 59.012 | 57.895 | 0.00 | 0.00 | 37.19 | 2.93 |
87 | 88 | 4.571236 | TCCCCCAGGACGATCAAA | 57.429 | 55.556 | 0.00 | 0.00 | 37.19 | 2.69 |
96 | 97 | 1.285962 | ACATTGAAGTCATCCCCCAGG | 59.714 | 52.381 | 0.00 | 0.00 | 0.00 | 4.45 |
97 | 98 | 2.756760 | CAACATTGAAGTCATCCCCCAG | 59.243 | 50.000 | 0.00 | 0.00 | 0.00 | 4.45 |
98 | 99 | 2.557229 | CCAACATTGAAGTCATCCCCCA | 60.557 | 50.000 | 0.00 | 0.00 | 0.00 | 4.96 |
99 | 100 | 2.102578 | CCAACATTGAAGTCATCCCCC | 58.897 | 52.381 | 0.00 | 0.00 | 0.00 | 5.40 |
100 | 101 | 2.755103 | GTCCAACATTGAAGTCATCCCC | 59.245 | 50.000 | 0.00 | 0.00 | 0.00 | 4.81 |
101 | 102 | 3.420893 | TGTCCAACATTGAAGTCATCCC | 58.579 | 45.455 | 0.00 | 0.00 | 0.00 | 3.85 |
102 | 103 | 6.115446 | TCTATGTCCAACATTGAAGTCATCC | 58.885 | 40.000 | 0.00 | 0.00 | 39.88 | 3.51 |
103 | 104 | 7.615582 | TTCTATGTCCAACATTGAAGTCATC | 57.384 | 36.000 | 11.23 | 0.00 | 42.38 | 2.92 |
109 | 110 | 8.918202 | AGTTAACTTCTATGTCCAACATTGAA | 57.082 | 30.769 | 1.12 | 13.56 | 44.02 | 2.69 |
112 | 113 | 9.227777 | GGTTAGTTAACTTCTATGTCCAACATT | 57.772 | 33.333 | 14.49 | 0.00 | 36.94 | 2.71 |
113 | 114 | 7.827729 | GGGTTAGTTAACTTCTATGTCCAACAT | 59.172 | 37.037 | 14.49 | 0.00 | 38.12 | 2.71 |
114 | 115 | 7.016858 | AGGGTTAGTTAACTTCTATGTCCAACA | 59.983 | 37.037 | 14.49 | 0.00 | 36.47 | 3.33 |
115 | 116 | 7.392418 | AGGGTTAGTTAACTTCTATGTCCAAC | 58.608 | 38.462 | 14.49 | 8.33 | 36.47 | 3.77 |
116 | 117 | 7.563724 | AGGGTTAGTTAACTTCTATGTCCAA | 57.436 | 36.000 | 14.49 | 0.00 | 36.47 | 3.53 |
117 | 118 | 7.563724 | AAGGGTTAGTTAACTTCTATGTCCA | 57.436 | 36.000 | 14.49 | 0.00 | 36.47 | 4.02 |
127 | 128 | 9.516546 | CAGAAGGAAATAAAGGGTTAGTTAACT | 57.483 | 33.333 | 13.68 | 13.68 | 36.47 | 2.24 |
128 | 129 | 8.242053 | GCAGAAGGAAATAAAGGGTTAGTTAAC | 58.758 | 37.037 | 0.00 | 0.00 | 35.50 | 2.01 |
129 | 130 | 8.168058 | AGCAGAAGGAAATAAAGGGTTAGTTAA | 58.832 | 33.333 | 0.00 | 0.00 | 28.02 | 2.01 |
130 | 131 | 7.610305 | CAGCAGAAGGAAATAAAGGGTTAGTTA | 59.390 | 37.037 | 0.00 | 0.00 | 28.02 | 2.24 |
131 | 132 | 6.434340 | CAGCAGAAGGAAATAAAGGGTTAGTT | 59.566 | 38.462 | 0.00 | 0.00 | 30.44 | 2.24 |
132 | 133 | 5.946377 | CAGCAGAAGGAAATAAAGGGTTAGT | 59.054 | 40.000 | 0.00 | 0.00 | 0.00 | 2.24 |
133 | 134 | 5.163612 | GCAGCAGAAGGAAATAAAGGGTTAG | 60.164 | 44.000 | 0.00 | 0.00 | 0.00 | 2.34 |
134 | 135 | 4.705023 | GCAGCAGAAGGAAATAAAGGGTTA | 59.295 | 41.667 | 0.00 | 0.00 | 0.00 | 2.85 |
135 | 136 | 3.511540 | GCAGCAGAAGGAAATAAAGGGTT | 59.488 | 43.478 | 0.00 | 0.00 | 0.00 | 4.11 |
136 | 137 | 3.092301 | GCAGCAGAAGGAAATAAAGGGT | 58.908 | 45.455 | 0.00 | 0.00 | 0.00 | 4.34 |
137 | 138 | 3.091545 | TGCAGCAGAAGGAAATAAAGGG | 58.908 | 45.455 | 0.00 | 0.00 | 0.00 | 3.95 |
138 | 139 | 4.219288 | AGTTGCAGCAGAAGGAAATAAAGG | 59.781 | 41.667 | 2.55 | 0.00 | 0.00 | 3.11 |
139 | 140 | 5.048504 | TCAGTTGCAGCAGAAGGAAATAAAG | 60.049 | 40.000 | 2.55 | 0.00 | 0.00 | 1.85 |
140 | 141 | 4.826733 | TCAGTTGCAGCAGAAGGAAATAAA | 59.173 | 37.500 | 2.55 | 0.00 | 0.00 | 1.40 |
141 | 142 | 4.216257 | GTCAGTTGCAGCAGAAGGAAATAA | 59.784 | 41.667 | 2.55 | 0.00 | 0.00 | 1.40 |
142 | 143 | 3.753272 | GTCAGTTGCAGCAGAAGGAAATA | 59.247 | 43.478 | 2.55 | 0.00 | 0.00 | 1.40 |
143 | 144 | 2.555757 | GTCAGTTGCAGCAGAAGGAAAT | 59.444 | 45.455 | 2.55 | 0.00 | 0.00 | 2.17 |
144 | 145 | 1.949525 | GTCAGTTGCAGCAGAAGGAAA | 59.050 | 47.619 | 2.55 | 0.00 | 0.00 | 3.13 |
145 | 146 | 1.134128 | TGTCAGTTGCAGCAGAAGGAA | 60.134 | 47.619 | 2.55 | 0.00 | 0.00 | 3.36 |
146 | 147 | 0.469494 | TGTCAGTTGCAGCAGAAGGA | 59.531 | 50.000 | 2.55 | 0.00 | 0.00 | 3.36 |
147 | 148 | 0.873054 | CTGTCAGTTGCAGCAGAAGG | 59.127 | 55.000 | 2.55 | 0.00 | 0.00 | 3.46 |
148 | 149 | 1.875009 | TCTGTCAGTTGCAGCAGAAG | 58.125 | 50.000 | 2.55 | 1.66 | 35.36 | 2.85 |
149 | 150 | 2.556144 | ATCTGTCAGTTGCAGCAGAA | 57.444 | 45.000 | 2.55 | 0.00 | 40.71 | 3.02 |
150 | 151 | 2.556144 | AATCTGTCAGTTGCAGCAGA | 57.444 | 45.000 | 2.55 | 6.42 | 41.43 | 4.26 |
151 | 152 | 3.637998 | AAAATCTGTCAGTTGCAGCAG | 57.362 | 42.857 | 2.55 | 0.00 | 34.21 | 4.24 |
152 | 153 | 3.253188 | GGTAAAATCTGTCAGTTGCAGCA | 59.747 | 43.478 | 2.55 | 0.00 | 34.21 | 4.41 |
153 | 154 | 3.366374 | GGGTAAAATCTGTCAGTTGCAGC | 60.366 | 47.826 | 0.00 | 0.00 | 34.21 | 5.25 |
154 | 155 | 3.191371 | GGGGTAAAATCTGTCAGTTGCAG | 59.809 | 47.826 | 0.00 | 0.00 | 35.43 | 4.41 |
155 | 156 | 3.153919 | GGGGTAAAATCTGTCAGTTGCA | 58.846 | 45.455 | 0.00 | 0.00 | 0.00 | 4.08 |
156 | 157 | 2.492088 | GGGGGTAAAATCTGTCAGTTGC | 59.508 | 50.000 | 0.00 | 0.00 | 0.00 | 4.17 |
157 | 158 | 4.034285 | AGGGGGTAAAATCTGTCAGTTG | 57.966 | 45.455 | 0.00 | 0.00 | 0.00 | 3.16 |
158 | 159 | 4.741928 | AAGGGGGTAAAATCTGTCAGTT | 57.258 | 40.909 | 0.00 | 0.00 | 0.00 | 3.16 |
159 | 160 | 4.741928 | AAAGGGGGTAAAATCTGTCAGT | 57.258 | 40.909 | 0.00 | 0.00 | 0.00 | 3.41 |
160 | 161 | 4.220602 | CCAAAAGGGGGTAAAATCTGTCAG | 59.779 | 45.833 | 0.00 | 0.00 | 0.00 | 3.51 |
161 | 162 | 4.156477 | CCAAAAGGGGGTAAAATCTGTCA | 58.844 | 43.478 | 0.00 | 0.00 | 0.00 | 3.58 |
162 | 163 | 4.801330 | CCAAAAGGGGGTAAAATCTGTC | 57.199 | 45.455 | 0.00 | 0.00 | 0.00 | 3.51 |
176 | 177 | 2.570284 | GCAACCGTCCCCCAAAAGG | 61.570 | 63.158 | 0.00 | 0.00 | 0.00 | 3.11 |
177 | 178 | 1.112916 | AAGCAACCGTCCCCCAAAAG | 61.113 | 55.000 | 0.00 | 0.00 | 0.00 | 2.27 |
178 | 179 | 0.185416 | TAAGCAACCGTCCCCCAAAA | 59.815 | 50.000 | 0.00 | 0.00 | 0.00 | 2.44 |
179 | 180 | 0.406361 | ATAAGCAACCGTCCCCCAAA | 59.594 | 50.000 | 0.00 | 0.00 | 0.00 | 3.28 |
180 | 181 | 0.034863 | GATAAGCAACCGTCCCCCAA | 60.035 | 55.000 | 0.00 | 0.00 | 0.00 | 4.12 |
181 | 182 | 1.605453 | GATAAGCAACCGTCCCCCA | 59.395 | 57.895 | 0.00 | 0.00 | 0.00 | 4.96 |
182 | 183 | 1.523032 | CGATAAGCAACCGTCCCCC | 60.523 | 63.158 | 0.00 | 0.00 | 0.00 | 5.40 |
183 | 184 | 1.523032 | CCGATAAGCAACCGTCCCC | 60.523 | 63.158 | 0.00 | 0.00 | 0.00 | 4.81 |
184 | 185 | 0.392060 | AACCGATAAGCAACCGTCCC | 60.392 | 55.000 | 0.00 | 0.00 | 0.00 | 4.46 |
185 | 186 | 1.395954 | GAAACCGATAAGCAACCGTCC | 59.604 | 52.381 | 0.00 | 0.00 | 0.00 | 4.79 |
186 | 187 | 1.060122 | CGAAACCGATAAGCAACCGTC | 59.940 | 52.381 | 0.00 | 0.00 | 0.00 | 4.79 |
187 | 188 | 1.073177 | CGAAACCGATAAGCAACCGT | 58.927 | 50.000 | 0.00 | 0.00 | 0.00 | 4.83 |
188 | 189 | 1.073177 | ACGAAACCGATAAGCAACCG | 58.927 | 50.000 | 0.00 | 0.00 | 0.00 | 4.44 |
189 | 190 | 3.058777 | TGAAACGAAACCGATAAGCAACC | 60.059 | 43.478 | 0.00 | 0.00 | 0.00 | 3.77 |
190 | 191 | 4.136517 | TGAAACGAAACCGATAAGCAAC | 57.863 | 40.909 | 0.00 | 0.00 | 0.00 | 4.17 |
191 | 192 | 4.452795 | TCATGAAACGAAACCGATAAGCAA | 59.547 | 37.500 | 0.00 | 0.00 | 0.00 | 3.91 |
192 | 193 | 3.997681 | TCATGAAACGAAACCGATAAGCA | 59.002 | 39.130 | 0.00 | 0.00 | 0.00 | 3.91 |
193 | 194 | 4.593597 | TCATGAAACGAAACCGATAAGC | 57.406 | 40.909 | 0.00 | 0.00 | 0.00 | 3.09 |
194 | 195 | 7.021196 | ACATTTCATGAAACGAAACCGATAAG | 58.979 | 34.615 | 22.71 | 0.00 | 35.31 | 1.73 |
195 | 196 | 6.904498 | ACATTTCATGAAACGAAACCGATAA | 58.096 | 32.000 | 22.71 | 0.00 | 35.31 | 1.75 |
196 | 197 | 6.489127 | ACATTTCATGAAACGAAACCGATA | 57.511 | 33.333 | 22.71 | 0.00 | 35.31 | 2.92 |
197 | 198 | 5.371115 | ACATTTCATGAAACGAAACCGAT | 57.629 | 34.783 | 22.71 | 1.19 | 35.31 | 4.18 |
198 | 199 | 4.822036 | ACATTTCATGAAACGAAACCGA | 57.178 | 36.364 | 22.71 | 0.00 | 35.31 | 4.69 |
199 | 200 | 6.799441 | TGATTACATTTCATGAAACGAAACCG | 59.201 | 34.615 | 22.71 | 8.22 | 35.31 | 4.44 |
200 | 201 | 8.687824 | ATGATTACATTTCATGAAACGAAACC | 57.312 | 30.769 | 22.71 | 8.93 | 35.31 | 3.27 |
210 | 211 | 6.964807 | TTCTCCCCATGATTACATTTCATG | 57.035 | 37.500 | 6.67 | 6.67 | 46.49 | 3.07 |
211 | 212 | 7.976414 | TTTTCTCCCCATGATTACATTTCAT | 57.024 | 32.000 | 0.00 | 0.00 | 34.15 | 2.57 |
212 | 213 | 7.454380 | AGTTTTTCTCCCCATGATTACATTTCA | 59.546 | 33.333 | 0.00 | 0.00 | 34.15 | 2.69 |
213 | 214 | 7.840931 | AGTTTTTCTCCCCATGATTACATTTC | 58.159 | 34.615 | 0.00 | 0.00 | 34.15 | 2.17 |
214 | 215 | 7.797121 | AGTTTTTCTCCCCATGATTACATTT | 57.203 | 32.000 | 0.00 | 0.00 | 34.15 | 2.32 |
215 | 216 | 7.410120 | GAGTTTTTCTCCCCATGATTACATT | 57.590 | 36.000 | 0.00 | 0.00 | 37.22 | 2.71 |
229 | 230 | 6.993786 | CTCCCAGATTAAGGAGTTTTTCTC | 57.006 | 41.667 | 0.00 | 0.00 | 44.01 | 2.87 |
238 | 239 | 9.676129 | ACTATTATTCTTCTCCCAGATTAAGGA | 57.324 | 33.333 | 0.00 | 0.00 | 0.00 | 3.36 |
246 | 247 | 8.831550 | GCAAAACTACTATTATTCTTCTCCCAG | 58.168 | 37.037 | 0.00 | 0.00 | 0.00 | 4.45 |
247 | 248 | 8.325787 | TGCAAAACTACTATTATTCTTCTCCCA | 58.674 | 33.333 | 0.00 | 0.00 | 0.00 | 4.37 |
248 | 249 | 8.732746 | TGCAAAACTACTATTATTCTTCTCCC | 57.267 | 34.615 | 0.00 | 0.00 | 0.00 | 4.30 |
254 | 255 | 9.461312 | TCCAACATGCAAAACTACTATTATTCT | 57.539 | 29.630 | 0.00 | 0.00 | 0.00 | 2.40 |
255 | 256 | 9.503427 | GTCCAACATGCAAAACTACTATTATTC | 57.497 | 33.333 | 0.00 | 0.00 | 0.00 | 1.75 |
256 | 257 | 9.243105 | AGTCCAACATGCAAAACTACTATTATT | 57.757 | 29.630 | 0.00 | 0.00 | 0.00 | 1.40 |
257 | 258 | 8.807948 | AGTCCAACATGCAAAACTACTATTAT | 57.192 | 30.769 | 0.00 | 0.00 | 0.00 | 1.28 |
258 | 259 | 9.899661 | ATAGTCCAACATGCAAAACTACTATTA | 57.100 | 29.630 | 0.00 | 0.00 | 0.00 | 0.98 |
259 | 260 | 8.677300 | CATAGTCCAACATGCAAAACTACTATT | 58.323 | 33.333 | 0.00 | 0.00 | 0.00 | 1.73 |
260 | 261 | 7.829211 | ACATAGTCCAACATGCAAAACTACTAT | 59.171 | 33.333 | 0.00 | 0.00 | 0.00 | 2.12 |
261 | 262 | 7.165485 | ACATAGTCCAACATGCAAAACTACTA | 58.835 | 34.615 | 0.00 | 0.00 | 0.00 | 1.82 |
262 | 263 | 6.003950 | ACATAGTCCAACATGCAAAACTACT | 58.996 | 36.000 | 0.00 | 0.00 | 0.00 | 2.57 |
263 | 264 | 6.149474 | AGACATAGTCCAACATGCAAAACTAC | 59.851 | 38.462 | 0.00 | 0.00 | 32.18 | 2.73 |
264 | 265 | 6.237901 | AGACATAGTCCAACATGCAAAACTA | 58.762 | 36.000 | 0.00 | 0.00 | 32.18 | 2.24 |
265 | 266 | 5.072741 | AGACATAGTCCAACATGCAAAACT | 58.927 | 37.500 | 0.00 | 0.00 | 32.18 | 2.66 |
266 | 267 | 5.376854 | AGACATAGTCCAACATGCAAAAC | 57.623 | 39.130 | 0.00 | 0.00 | 32.18 | 2.43 |
267 | 268 | 5.301551 | ACAAGACATAGTCCAACATGCAAAA | 59.698 | 36.000 | 0.00 | 0.00 | 32.18 | 2.44 |
268 | 269 | 4.826733 | ACAAGACATAGTCCAACATGCAAA | 59.173 | 37.500 | 0.00 | 0.00 | 32.18 | 3.68 |
269 | 270 | 4.397420 | ACAAGACATAGTCCAACATGCAA | 58.603 | 39.130 | 0.00 | 0.00 | 32.18 | 4.08 |
270 | 271 | 4.019792 | ACAAGACATAGTCCAACATGCA | 57.980 | 40.909 | 0.00 | 0.00 | 32.18 | 3.96 |
271 | 272 | 5.643777 | ACTTACAAGACATAGTCCAACATGC | 59.356 | 40.000 | 0.00 | 0.00 | 32.18 | 4.06 |
272 | 273 | 7.010552 | GCTACTTACAAGACATAGTCCAACATG | 59.989 | 40.741 | 0.00 | 0.00 | 32.18 | 3.21 |
273 | 274 | 7.042335 | GCTACTTACAAGACATAGTCCAACAT | 58.958 | 38.462 | 0.00 | 0.00 | 32.18 | 2.71 |
274 | 275 | 6.395629 | GCTACTTACAAGACATAGTCCAACA | 58.604 | 40.000 | 0.00 | 0.00 | 32.18 | 3.33 |
275 | 276 | 5.811100 | GGCTACTTACAAGACATAGTCCAAC | 59.189 | 44.000 | 0.00 | 0.00 | 32.18 | 3.77 |
276 | 277 | 5.720041 | AGGCTACTTACAAGACATAGTCCAA | 59.280 | 40.000 | 0.00 | 0.00 | 32.18 | 3.53 |
277 | 278 | 5.127194 | CAGGCTACTTACAAGACATAGTCCA | 59.873 | 44.000 | 0.00 | 0.00 | 32.18 | 4.02 |
278 | 279 | 5.360144 | TCAGGCTACTTACAAGACATAGTCC | 59.640 | 44.000 | 0.00 | 0.00 | 32.18 | 3.85 |
279 | 280 | 6.452494 | TCAGGCTACTTACAAGACATAGTC | 57.548 | 41.667 | 0.00 | 0.00 | 0.00 | 2.59 |
280 | 281 | 6.437793 | ACTTCAGGCTACTTACAAGACATAGT | 59.562 | 38.462 | 0.00 | 0.00 | 0.00 | 2.12 |
281 | 282 | 6.754209 | CACTTCAGGCTACTTACAAGACATAG | 59.246 | 42.308 | 0.00 | 0.00 | 0.00 | 2.23 |
282 | 283 | 6.631016 | CACTTCAGGCTACTTACAAGACATA | 58.369 | 40.000 | 0.00 | 0.00 | 0.00 | 2.29 |
283 | 284 | 5.482908 | CACTTCAGGCTACTTACAAGACAT | 58.517 | 41.667 | 0.00 | 0.00 | 0.00 | 3.06 |
284 | 285 | 4.799586 | GCACTTCAGGCTACTTACAAGACA | 60.800 | 45.833 | 0.00 | 0.00 | 0.00 | 3.41 |
285 | 286 | 3.680458 | GCACTTCAGGCTACTTACAAGAC | 59.320 | 47.826 | 0.00 | 0.00 | 0.00 | 3.01 |
286 | 287 | 3.323691 | TGCACTTCAGGCTACTTACAAGA | 59.676 | 43.478 | 0.00 | 0.00 | 0.00 | 3.02 |
287 | 288 | 3.664107 | TGCACTTCAGGCTACTTACAAG | 58.336 | 45.455 | 0.00 | 0.00 | 0.00 | 3.16 |
288 | 289 | 3.762407 | TGCACTTCAGGCTACTTACAA | 57.238 | 42.857 | 0.00 | 0.00 | 0.00 | 2.41 |
289 | 290 | 3.762407 | TTGCACTTCAGGCTACTTACA | 57.238 | 42.857 | 0.00 | 0.00 | 0.00 | 2.41 |
290 | 291 | 5.629079 | ATTTTGCACTTCAGGCTACTTAC | 57.371 | 39.130 | 0.00 | 0.00 | 0.00 | 2.34 |
291 | 292 | 6.648879 | AAATTTTGCACTTCAGGCTACTTA | 57.351 | 33.333 | 0.00 | 0.00 | 0.00 | 2.24 |
292 | 293 | 5.535753 | AAATTTTGCACTTCAGGCTACTT | 57.464 | 34.783 | 0.00 | 0.00 | 0.00 | 2.24 |
293 | 294 | 5.068987 | TCAAAATTTTGCACTTCAGGCTACT | 59.931 | 36.000 | 23.36 | 0.00 | 38.05 | 2.57 |
294 | 295 | 5.175673 | GTCAAAATTTTGCACTTCAGGCTAC | 59.824 | 40.000 | 23.36 | 9.86 | 38.05 | 3.58 |
295 | 296 | 5.163468 | TGTCAAAATTTTGCACTTCAGGCTA | 60.163 | 36.000 | 23.36 | 1.76 | 38.05 | 3.93 |
296 | 297 | 4.122046 | GTCAAAATTTTGCACTTCAGGCT | 58.878 | 39.130 | 23.36 | 0.00 | 38.05 | 4.58 |
297 | 298 | 3.870419 | TGTCAAAATTTTGCACTTCAGGC | 59.130 | 39.130 | 23.36 | 2.56 | 38.05 | 4.85 |
298 | 299 | 5.350914 | TGTTGTCAAAATTTTGCACTTCAGG | 59.649 | 36.000 | 23.36 | 0.00 | 38.05 | 3.86 |
299 | 300 | 6.406093 | TGTTGTCAAAATTTTGCACTTCAG | 57.594 | 33.333 | 23.36 | 0.63 | 38.05 | 3.02 |
300 | 301 | 6.981762 | ATGTTGTCAAAATTTTGCACTTCA | 57.018 | 29.167 | 23.36 | 20.54 | 38.05 | 3.02 |
301 | 302 | 8.130307 | AGTATGTTGTCAAAATTTTGCACTTC | 57.870 | 30.769 | 23.36 | 17.19 | 38.05 | 3.01 |
302 | 303 | 8.389603 | CAAGTATGTTGTCAAAATTTTGCACTT | 58.610 | 29.630 | 23.36 | 18.01 | 38.05 | 3.16 |
303 | 304 | 7.011295 | CCAAGTATGTTGTCAAAATTTTGCACT | 59.989 | 33.333 | 23.36 | 14.37 | 38.05 | 4.40 |
304 | 305 | 7.125113 | CCAAGTATGTTGTCAAAATTTTGCAC | 58.875 | 34.615 | 23.36 | 20.57 | 38.05 | 4.57 |
305 | 306 | 6.820656 | ACCAAGTATGTTGTCAAAATTTTGCA | 59.179 | 30.769 | 23.36 | 20.39 | 38.05 | 4.08 |
306 | 307 | 7.245419 | ACCAAGTATGTTGTCAAAATTTTGC | 57.755 | 32.000 | 23.36 | 18.42 | 38.05 | 3.68 |
307 | 308 | 7.493971 | TGGACCAAGTATGTTGTCAAAATTTTG | 59.506 | 33.333 | 22.40 | 22.40 | 39.48 | 2.44 |
308 | 309 | 7.560368 | TGGACCAAGTATGTTGTCAAAATTTT | 58.440 | 30.769 | 0.00 | 0.00 | 0.00 | 1.82 |
309 | 310 | 7.118496 | TGGACCAAGTATGTTGTCAAAATTT | 57.882 | 32.000 | 0.00 | 0.00 | 0.00 | 1.82 |
310 | 311 | 6.723298 | TGGACCAAGTATGTTGTCAAAATT | 57.277 | 33.333 | 0.00 | 0.00 | 0.00 | 1.82 |
311 | 312 | 6.723298 | TTGGACCAAGTATGTTGTCAAAAT | 57.277 | 33.333 | 1.69 | 0.00 | 0.00 | 1.82 |
312 | 313 | 6.531503 | TTTGGACCAAGTATGTTGTCAAAA | 57.468 | 33.333 | 7.07 | 0.00 | 0.00 | 2.44 |
313 | 314 | 6.723298 | ATTTGGACCAAGTATGTTGTCAAA | 57.277 | 33.333 | 7.07 | 0.00 | 0.00 | 2.69 |
314 | 315 | 6.511416 | CAATTTGGACCAAGTATGTTGTCAA | 58.489 | 36.000 | 7.07 | 0.00 | 0.00 | 3.18 |
315 | 316 | 5.508825 | GCAATTTGGACCAAGTATGTTGTCA | 60.509 | 40.000 | 7.07 | 0.00 | 0.00 | 3.58 |
316 | 317 | 4.923281 | GCAATTTGGACCAAGTATGTTGTC | 59.077 | 41.667 | 7.07 | 3.27 | 0.00 | 3.18 |
317 | 318 | 4.343526 | TGCAATTTGGACCAAGTATGTTGT | 59.656 | 37.500 | 7.07 | 0.00 | 0.00 | 3.32 |
318 | 319 | 4.880759 | TGCAATTTGGACCAAGTATGTTG | 58.119 | 39.130 | 7.07 | 9.69 | 0.00 | 3.33 |
319 | 320 | 4.561326 | GCTGCAATTTGGACCAAGTATGTT | 60.561 | 41.667 | 7.07 | 0.00 | 0.00 | 2.71 |
320 | 321 | 3.056607 | GCTGCAATTTGGACCAAGTATGT | 60.057 | 43.478 | 7.07 | 0.00 | 0.00 | 2.29 |
321 | 322 | 3.194116 | AGCTGCAATTTGGACCAAGTATG | 59.806 | 43.478 | 7.07 | 8.97 | 0.00 | 2.39 |
322 | 323 | 3.434309 | AGCTGCAATTTGGACCAAGTAT | 58.566 | 40.909 | 7.07 | 0.00 | 0.00 | 2.12 |
323 | 324 | 2.875296 | AGCTGCAATTTGGACCAAGTA | 58.125 | 42.857 | 7.07 | 0.00 | 0.00 | 2.24 |
324 | 325 | 1.708341 | AGCTGCAATTTGGACCAAGT | 58.292 | 45.000 | 7.07 | 0.93 | 0.00 | 3.16 |
325 | 326 | 2.821969 | ACTAGCTGCAATTTGGACCAAG | 59.178 | 45.455 | 7.07 | 0.00 | 0.00 | 3.61 |
326 | 327 | 2.875296 | ACTAGCTGCAATTTGGACCAA | 58.125 | 42.857 | 1.69 | 1.69 | 0.00 | 3.67 |
327 | 328 | 2.584835 | ACTAGCTGCAATTTGGACCA | 57.415 | 45.000 | 1.02 | 0.00 | 0.00 | 4.02 |
328 | 329 | 4.399303 | ACATTACTAGCTGCAATTTGGACC | 59.601 | 41.667 | 1.02 | 0.00 | 0.00 | 4.46 |
329 | 330 | 5.449177 | GGACATTACTAGCTGCAATTTGGAC | 60.449 | 44.000 | 1.02 | 0.00 | 0.00 | 4.02 |
330 | 331 | 4.640201 | GGACATTACTAGCTGCAATTTGGA | 59.360 | 41.667 | 1.02 | 0.00 | 0.00 | 3.53 |
331 | 332 | 4.398988 | TGGACATTACTAGCTGCAATTTGG | 59.601 | 41.667 | 1.02 | 0.00 | 0.00 | 3.28 |
332 | 333 | 5.565592 | TGGACATTACTAGCTGCAATTTG | 57.434 | 39.130 | 1.02 | 0.00 | 0.00 | 2.32 |
333 | 334 | 6.588719 | TTTGGACATTACTAGCTGCAATTT | 57.411 | 33.333 | 1.02 | 0.00 | 0.00 | 1.82 |
334 | 335 | 6.588719 | TTTTGGACATTACTAGCTGCAATT | 57.411 | 33.333 | 1.02 | 0.00 | 0.00 | 2.32 |
335 | 336 | 6.406177 | CCATTTTGGACATTACTAGCTGCAAT | 60.406 | 38.462 | 1.02 | 0.00 | 40.96 | 3.56 |
336 | 337 | 5.105797 | CCATTTTGGACATTACTAGCTGCAA | 60.106 | 40.000 | 1.02 | 0.00 | 40.96 | 4.08 |
337 | 338 | 4.398988 | CCATTTTGGACATTACTAGCTGCA | 59.601 | 41.667 | 1.02 | 0.00 | 40.96 | 4.41 |
338 | 339 | 4.734695 | GCCATTTTGGACATTACTAGCTGC | 60.735 | 45.833 | 0.00 | 0.00 | 40.96 | 5.25 |
339 | 340 | 4.398988 | TGCCATTTTGGACATTACTAGCTG | 59.601 | 41.667 | 0.00 | 0.00 | 40.96 | 4.24 |
340 | 341 | 4.599041 | TGCCATTTTGGACATTACTAGCT | 58.401 | 39.130 | 0.00 | 0.00 | 40.96 | 3.32 |
341 | 342 | 4.981806 | TGCCATTTTGGACATTACTAGC | 57.018 | 40.909 | 0.00 | 0.00 | 40.96 | 3.42 |
342 | 343 | 7.818930 | ACATTTTGCCATTTTGGACATTACTAG | 59.181 | 33.333 | 0.00 | 0.00 | 40.96 | 2.57 |
343 | 344 | 7.675062 | ACATTTTGCCATTTTGGACATTACTA | 58.325 | 30.769 | 0.00 | 0.00 | 40.96 | 1.82 |
344 | 345 | 6.532826 | ACATTTTGCCATTTTGGACATTACT | 58.467 | 32.000 | 0.00 | 0.00 | 40.96 | 2.24 |
345 | 346 | 6.799926 | ACATTTTGCCATTTTGGACATTAC | 57.200 | 33.333 | 0.00 | 0.00 | 40.96 | 1.89 |
346 | 347 | 7.933577 | TGTTACATTTTGCCATTTTGGACATTA | 59.066 | 29.630 | 0.00 | 0.00 | 40.96 | 1.90 |
347 | 348 | 6.769822 | TGTTACATTTTGCCATTTTGGACATT | 59.230 | 30.769 | 0.00 | 0.00 | 40.96 | 2.71 |
348 | 349 | 6.294473 | TGTTACATTTTGCCATTTTGGACAT | 58.706 | 32.000 | 0.00 | 0.00 | 40.96 | 3.06 |
349 | 350 | 5.674525 | TGTTACATTTTGCCATTTTGGACA | 58.325 | 33.333 | 0.00 | 0.00 | 40.96 | 4.02 |
387 | 388 | 1.066143 | CAGTATTCGCACCTGGAACCT | 60.066 | 52.381 | 0.00 | 0.00 | 0.00 | 3.50 |
414 | 415 | 0.884704 | CTTGTCACGGAACACCCTGG | 60.885 | 60.000 | 0.00 | 0.00 | 0.00 | 4.45 |
543 | 552 | 2.610859 | ATGCCGTCCCTCCCTTGT | 60.611 | 61.111 | 0.00 | 0.00 | 0.00 | 3.16 |
698 | 712 | 3.532155 | CGAAGGAGAGGCCGGGAG | 61.532 | 72.222 | 2.18 | 0.00 | 43.43 | 4.30 |
704 | 718 | 1.590259 | GATGCGACGAAGGAGAGGC | 60.590 | 63.158 | 0.00 | 0.00 | 0.00 | 4.70 |
716 | 730 | 0.109272 | GTGGACGAACTCAGATGCGA | 60.109 | 55.000 | 0.00 | 0.00 | 0.00 | 5.10 |
773 | 789 | 0.317269 | GCATCGCATCAACCGGATTG | 60.317 | 55.000 | 9.46 | 9.58 | 39.94 | 2.67 |
775 | 791 | 1.893808 | GGCATCGCATCAACCGGAT | 60.894 | 57.895 | 9.46 | 0.00 | 36.39 | 4.18 |
776 | 792 | 2.513666 | GGCATCGCATCAACCGGA | 60.514 | 61.111 | 9.46 | 0.00 | 0.00 | 5.14 |
777 | 793 | 3.940640 | CGGCATCGCATCAACCGG | 61.941 | 66.667 | 0.00 | 0.00 | 40.18 | 5.28 |
778 | 794 | 2.874694 | CTCGGCATCGCATCAACCG | 61.875 | 63.158 | 0.00 | 0.00 | 45.15 | 4.44 |
801 | 817 | 3.918220 | GCGCACAGAATCTCGCCG | 61.918 | 66.667 | 0.30 | 0.00 | 41.53 | 6.46 |
812 | 828 | 2.098934 | ACACTTCAAAATCTTGCGCACA | 59.901 | 40.909 | 11.12 | 0.00 | 32.14 | 4.57 |
819 | 835 | 4.111916 | CGCACCAAACACTTCAAAATCTT | 58.888 | 39.130 | 0.00 | 0.00 | 0.00 | 2.40 |
825 | 842 | 1.021202 | CTCCGCACCAAACACTTCAA | 58.979 | 50.000 | 0.00 | 0.00 | 0.00 | 2.69 |
841 | 858 | 5.016831 | ACAGAATTTTACACCCCAATCTCC | 58.983 | 41.667 | 0.00 | 0.00 | 0.00 | 3.71 |
842 | 859 | 6.434340 | AGAACAGAATTTTACACCCCAATCTC | 59.566 | 38.462 | 0.00 | 0.00 | 0.00 | 2.75 |
1434 | 1469 | 2.188817 | GACCCCAGTATCTCAACCAGT | 58.811 | 52.381 | 0.00 | 0.00 | 0.00 | 4.00 |
1495 | 1530 | 4.263572 | CCCGCCCATTATGCCGGA | 62.264 | 66.667 | 19.10 | 0.00 | 43.20 | 5.14 |
1602 | 1637 | 2.110006 | GCGAAGGGCTCCTCATCC | 59.890 | 66.667 | 0.00 | 0.00 | 39.11 | 3.51 |
1632 | 1667 | 0.400594 | CTCTCCCGGTGAACCCTTTT | 59.599 | 55.000 | 0.00 | 0.00 | 0.00 | 2.27 |
1684 | 1719 | 1.461706 | AACCCTGTCTCCCCTACCCT | 61.462 | 60.000 | 0.00 | 0.00 | 0.00 | 4.34 |
1713 | 1748 | 3.617735 | TCCAACAGGTACGCCGCA | 61.618 | 61.111 | 0.00 | 0.00 | 40.50 | 5.69 |
1803 | 1838 | 4.114997 | GTGCCGCCGTTCATTGGG | 62.115 | 66.667 | 0.00 | 0.00 | 0.00 | 4.12 |
1806 | 1841 | 2.746277 | GGAGTGCCGCCGTTCATT | 60.746 | 61.111 | 0.00 | 0.00 | 0.00 | 2.57 |
1845 | 1880 | 4.623932 | TGAAGCAATCTTACTGGTGACT | 57.376 | 40.909 | 0.00 | 0.00 | 31.48 | 3.41 |
2124 | 2159 | 1.134694 | GAACGGAATTGACGCCTGC | 59.865 | 57.895 | 0.00 | 0.00 | 34.00 | 4.85 |
2166 | 2201 | 3.012518 | CCTCATCGGATCAAGTTTGCTT | 58.987 | 45.455 | 0.00 | 0.00 | 32.20 | 3.91 |
2205 | 2240 | 1.541233 | CGTATCATGGGCAGTTCTCCC | 60.541 | 57.143 | 0.00 | 0.00 | 44.17 | 4.30 |
2244 | 2279 | 3.629398 | GGAAGATTGTGCACAGGATAAGG | 59.371 | 47.826 | 20.59 | 0.00 | 0.00 | 2.69 |
2250 | 2285 | 2.189594 | TGAGGAAGATTGTGCACAGG | 57.810 | 50.000 | 20.59 | 0.00 | 0.00 | 4.00 |
2253 | 2288 | 2.783135 | TCCTTGAGGAAGATTGTGCAC | 58.217 | 47.619 | 10.75 | 10.75 | 42.18 | 4.57 |
2310 | 2345 | 3.137176 | TGAATTCCCTGGTCATCATCTCC | 59.863 | 47.826 | 2.27 | 0.00 | 0.00 | 3.71 |
2532 | 2573 | 0.318441 | CCACGAGCTTTGTCAGAGGA | 59.682 | 55.000 | 0.00 | 0.00 | 0.00 | 3.71 |
2607 | 2648 | 3.911868 | GGATGAGAACCGATCAGATGAG | 58.088 | 50.000 | 0.00 | 0.00 | 0.00 | 2.90 |
2746 | 2787 | 1.608025 | GCTCATGTCCGACAACCTGAA | 60.608 | 52.381 | 5.07 | 0.00 | 0.00 | 3.02 |
2920 | 2961 | 4.067896 | AGAAACACAGGCAACAGTATCAG | 58.932 | 43.478 | 0.00 | 0.00 | 41.41 | 2.90 |
2923 | 2964 | 5.451798 | CCAAAAGAAACACAGGCAACAGTAT | 60.452 | 40.000 | 0.00 | 0.00 | 41.41 | 2.12 |
3038 | 3109 | 8.735303 | TTAACATAACTAGTAAACGTGCGTAA | 57.265 | 30.769 | 0.00 | 0.00 | 0.00 | 3.18 |
3095 | 3168 | 7.633621 | CATCTAACACAATATACACAAGCTGG | 58.366 | 38.462 | 0.00 | 0.00 | 0.00 | 4.85 |
3195 | 3268 | 6.037610 | CAGGTAAGCATTTTACATCTGAGGTC | 59.962 | 42.308 | 0.00 | 0.00 | 0.00 | 3.85 |
3197 | 3270 | 5.297776 | CCAGGTAAGCATTTTACATCTGAGG | 59.702 | 44.000 | 0.00 | 0.00 | 0.00 | 3.86 |
3201 | 3274 | 5.570320 | ACACCAGGTAAGCATTTTACATCT | 58.430 | 37.500 | 0.00 | 0.00 | 0.00 | 2.90 |
3270 | 3343 | 8.007716 | TCGTCAGATTTGAACGTAAAGAAATTC | 58.992 | 33.333 | 0.00 | 0.00 | 34.49 | 2.17 |
3279 | 3352 | 5.117355 | AGTCTTCGTCAGATTTGAACGTA | 57.883 | 39.130 | 0.00 | 0.34 | 34.49 | 3.57 |
3280 | 3353 | 3.978687 | AGTCTTCGTCAGATTTGAACGT | 58.021 | 40.909 | 7.65 | 0.00 | 34.49 | 3.99 |
3281 | 3354 | 6.448053 | TTTAGTCTTCGTCAGATTTGAACG | 57.552 | 37.500 | 0.00 | 0.00 | 34.49 | 3.95 |
3290 | 3363 | 6.771188 | AGACAACATTTTAGTCTTCGTCAG | 57.229 | 37.500 | 0.00 | 0.00 | 39.45 | 3.51 |
3297 | 3370 | 8.143835 | CCAATTCCAAAGACAACATTTTAGTCT | 58.856 | 33.333 | 0.00 | 0.00 | 43.98 | 3.24 |
3298 | 3371 | 7.095649 | GCCAATTCCAAAGACAACATTTTAGTC | 60.096 | 37.037 | 0.00 | 0.00 | 0.00 | 2.59 |
3299 | 3372 | 6.705825 | GCCAATTCCAAAGACAACATTTTAGT | 59.294 | 34.615 | 0.00 | 0.00 | 0.00 | 2.24 |
3300 | 3373 | 6.705381 | TGCCAATTCCAAAGACAACATTTTAG | 59.295 | 34.615 | 0.00 | 0.00 | 0.00 | 1.85 |
3301 | 3374 | 6.586344 | TGCCAATTCCAAAGACAACATTTTA | 58.414 | 32.000 | 0.00 | 0.00 | 0.00 | 1.52 |
3302 | 3375 | 5.435291 | TGCCAATTCCAAAGACAACATTTT | 58.565 | 33.333 | 0.00 | 0.00 | 0.00 | 1.82 |
3303 | 3376 | 5.033589 | TGCCAATTCCAAAGACAACATTT | 57.966 | 34.783 | 0.00 | 0.00 | 0.00 | 2.32 |
3304 | 3377 | 4.686191 | TGCCAATTCCAAAGACAACATT | 57.314 | 36.364 | 0.00 | 0.00 | 0.00 | 2.71 |
3305 | 3378 | 4.101430 | ACTTGCCAATTCCAAAGACAACAT | 59.899 | 37.500 | 0.00 | 0.00 | 0.00 | 2.71 |
3341 | 3415 | 8.412456 | TCTTACATTTTTCAACTGATCTTTGCA | 58.588 | 29.630 | 0.00 | 0.00 | 0.00 | 4.08 |
3387 | 3568 | 2.778299 | TGCAAGGTAACAGCAGTAAGG | 58.222 | 47.619 | 0.00 | 0.00 | 43.60 | 2.69 |
3409 | 3590 | 1.375098 | GCTGCTCCCTGTCTGCAATC | 61.375 | 60.000 | 0.00 | 0.00 | 36.22 | 2.67 |
3429 | 3610 | 7.301054 | GCATAATGCACCTGTGATTAAGATAC | 58.699 | 38.462 | 0.51 | 0.00 | 44.26 | 2.24 |
3552 | 3733 | 9.298250 | AGGTTATCTATCGCTGTTCTTTATCTA | 57.702 | 33.333 | 0.00 | 0.00 | 0.00 | 1.98 |
3566 | 3747 | 3.650070 | TCTGCTGCAGGTTATCTATCG | 57.350 | 47.619 | 27.79 | 0.23 | 31.51 | 2.92 |
3637 | 3820 | 5.098211 | GCTCAAATTAATCTTGGTGCAGAC | 58.902 | 41.667 | 0.00 | 0.00 | 0.00 | 3.51 |
3642 | 3825 | 7.599621 | TGTCAAATGCTCAAATTAATCTTGGTG | 59.400 | 33.333 | 9.18 | 5.79 | 0.00 | 4.17 |
3769 | 3952 | 4.588528 | ACAGCCAGGTGATTGTTTGTTTAT | 59.411 | 37.500 | 3.46 | 0.00 | 0.00 | 1.40 |
3838 | 4021 | 9.535878 | CAAGATCTACTTTATGTTCCCTCTTAC | 57.464 | 37.037 | 0.00 | 0.00 | 36.61 | 2.34 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.