Multiple sequence alignment - TraesCS2D01G540000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G540000 chr2D 100.000 3074 0 0 1 3074 620152456 620155529 0.000000e+00 5677.0
1 TraesCS2D01G540000 chr2D 79.514 576 76 25 1203 1756 620198943 620199498 3.740000e-99 372.0
2 TraesCS2D01G540000 chr2D 76.223 736 92 40 1198 1903 620193755 620194437 2.300000e-81 313.0
3 TraesCS2D01G540000 chr2D 83.889 180 23 3 1441 1620 620224345 620224518 1.900000e-37 167.0
4 TraesCS2D01G540000 chr2D 84.874 119 16 2 1203 1320 620447837 620447954 5.380000e-23 119.0
5 TraesCS2D01G540000 chr2D 77.907 172 24 11 1590 1755 620281980 620282143 9.070000e-16 95.3
6 TraesCS2D01G540000 chr2D 88.732 71 5 3 2530 2598 620194852 620194921 1.960000e-12 84.2
7 TraesCS2D01G540000 chr2D 95.556 45 2 0 3030 3074 593150763 593150807 4.250000e-09 73.1
8 TraesCS2D01G540000 chr2B 85.158 1361 74 31 644 1963 759741287 759742560 0.000000e+00 1277.0
9 TraesCS2D01G540000 chr2B 88.620 703 35 13 1961 2638 759742602 759743284 0.000000e+00 813.0
10 TraesCS2D01G540000 chr2B 86.572 633 39 13 1348 1965 759677051 759677652 0.000000e+00 656.0
11 TraesCS2D01G540000 chr2B 84.459 592 45 17 2319 2888 759677762 759678328 9.700000e-150 540.0
12 TraesCS2D01G540000 chr2B 85.672 335 18 13 2622 2955 759743300 759743605 2.960000e-85 326.0
13 TraesCS2D01G540000 chr2B 76.398 733 95 44 1203 1894 759817808 759818503 1.060000e-84 324.0
14 TraesCS2D01G540000 chr2B 75.105 715 92 46 1219 1903 759765468 759766126 3.930000e-64 255.0
15 TraesCS2D01G540000 chr2B 93.701 127 7 1 2949 3074 759743722 759743848 4.050000e-44 189.0
16 TraesCS2D01G540000 chr2B 84.184 196 12 5 634 819 759674235 759674421 4.080000e-39 172.0
17 TraesCS2D01G540000 chr2B 93.443 61 4 0 2949 3009 759678333 759678393 1.170000e-14 91.6
18 TraesCS2D01G540000 chr2B 82.143 112 9 4 2355 2462 759884607 759884711 5.460000e-13 86.1
19 TraesCS2D01G540000 chr2B 84.091 88 8 5 1668 1752 760119331 760119415 2.540000e-11 80.5
20 TraesCS2D01G540000 chr2B 76.087 184 22 14 2530 2694 759766568 759766748 3.290000e-10 76.8
21 TraesCS2D01G540000 chr2A 83.110 1119 105 35 1965 3033 751547438 751548522 0.000000e+00 942.0
22 TraesCS2D01G540000 chr2A 89.636 550 28 8 1418 1965 751546878 751547400 0.000000e+00 673.0
23 TraesCS2D01G540000 chr2A 88.034 585 35 9 517 1075 751546027 751546602 0.000000e+00 660.0
24 TraesCS2D01G540000 chr2A 90.074 272 27 0 1103 1374 751546602 751546873 1.360000e-93 353.0
25 TraesCS2D01G540000 chr2A 77.452 683 92 37 1203 1847 751609017 751609675 4.880000e-93 351.0
26 TraesCS2D01G540000 chr2A 78.017 464 49 30 1441 1873 751662861 751663302 3.060000e-60 243.0
27 TraesCS2D01G540000 chr2A 84.354 147 15 6 1203 1346 751662671 751662812 1.490000e-28 137.0
28 TraesCS2D01G540000 chr2A 87.619 105 11 2 1216 1319 752048295 752048398 1.500000e-23 121.0
29 TraesCS2D01G540000 chr2A 84.466 103 9 6 1655 1754 751892730 751892632 9.070000e-16 95.3
30 TraesCS2D01G540000 chr2A 83.516 91 8 3 2355 2445 751663485 751663568 9.140000e-11 78.7
31 TraesCS2D01G540000 chrUn 85.676 740 51 19 634 1340 23151411 23150694 0.000000e+00 728.0
32 TraesCS2D01G540000 chrUn 86.572 633 39 13 1348 1965 23148936 23148335 0.000000e+00 656.0
33 TraesCS2D01G540000 chrUn 85.767 541 42 16 2358 2888 23148174 23147659 9.700000e-150 540.0
34 TraesCS2D01G540000 chrUn 93.443 61 4 0 2949 3009 23147654 23147594 1.170000e-14 91.6
35 TraesCS2D01G540000 chr7D 95.556 45 2 0 3030 3074 575401983 575402027 4.250000e-09 73.1
36 TraesCS2D01G540000 chr7B 95.556 45 2 0 3030 3074 290324692 290324648 4.250000e-09 73.1
37 TraesCS2D01G540000 chr7B 95.556 45 2 0 3030 3074 376203808 376203764 4.250000e-09 73.1
38 TraesCS2D01G540000 chr7A 95.556 45 2 0 3030 3074 566465746 566465702 4.250000e-09 73.1
39 TraesCS2D01G540000 chr3B 97.619 42 1 0 3030 3071 798972919 798972960 4.250000e-09 73.1
40 TraesCS2D01G540000 chr3B 95.455 44 2 0 3030 3073 772172733 772172690 1.530000e-08 71.3
41 TraesCS2D01G540000 chr3B 100.000 28 0 0 883 910 411293620 411293647 6.000000e-03 52.8
42 TraesCS2D01G540000 chr4B 95.556 45 1 1 3023 3067 658204438 658204481 1.530000e-08 71.3
43 TraesCS2D01G540000 chr6A 100.000 28 0 0 190 217 590092127 590092100 6.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G540000 chr2D 620152456 620155529 3073 False 5677.00 5677 100.00000 1 3074 1 chr2D.!!$F2 3073
1 TraesCS2D01G540000 chr2D 620198943 620199498 555 False 372.00 372 79.51400 1203 1756 1 chr2D.!!$F3 553
2 TraesCS2D01G540000 chr2B 759741287 759743848 2561 False 651.25 1277 88.28775 644 3074 4 chr2B.!!$F5 2430
3 TraesCS2D01G540000 chr2B 759674235 759678393 4158 False 364.90 656 87.16450 634 3009 4 chr2B.!!$F4 2375
4 TraesCS2D01G540000 chr2B 759817808 759818503 695 False 324.00 324 76.39800 1203 1894 1 chr2B.!!$F1 691
5 TraesCS2D01G540000 chr2A 751546027 751548522 2495 False 657.00 942 87.71350 517 3033 4 chr2A.!!$F3 2516
6 TraesCS2D01G540000 chr2A 751609017 751609675 658 False 351.00 351 77.45200 1203 1847 1 chr2A.!!$F1 644
7 TraesCS2D01G540000 chrUn 23147594 23151411 3817 True 503.90 728 87.86450 634 3009 4 chrUn.!!$R1 2375

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
63 64 0.026803 GATCAAATCGGCGACACAGC 59.973 55.0 13.76 0.0 0.0 4.40 F
139 140 0.035598 TGGTGGTGGGTGTGATAACG 59.964 55.0 0.00 0.0 0.0 3.18 F
1439 3576 0.031585 TCTGACGACAACAACCCTCG 59.968 55.0 0.00 0.0 0.0 4.63 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1192 1246 0.165944 GATCAGCAAAACCGGTCGTG 59.834 55.0 8.04 10.64 0.00 4.35 R
1805 4027 0.242286 CAGGTAGGCTGATCGATCGG 59.758 60.0 26.79 26.79 36.26 4.18 R
2842 5245 0.179108 GCGAGGTATCTCCGCAACTT 60.179 55.0 12.87 0.00 41.99 2.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.423577 GCATGGACCTGTACGAAAAGT 58.576 47.619 0.00 0.00 0.00 2.66
21 22 2.812011 GCATGGACCTGTACGAAAAGTT 59.188 45.455 0.00 0.00 0.00 2.66
22 23 3.364964 GCATGGACCTGTACGAAAAGTTG 60.365 47.826 0.00 0.00 0.00 3.16
23 24 2.215196 TGGACCTGTACGAAAAGTTGC 58.785 47.619 0.00 0.00 0.00 4.17
24 25 1.534163 GGACCTGTACGAAAAGTTGCC 59.466 52.381 0.00 0.00 0.00 4.52
25 26 1.193874 GACCTGTACGAAAAGTTGCCG 59.806 52.381 0.00 0.00 0.00 5.69
26 27 0.515564 CCTGTACGAAAAGTTGCCGG 59.484 55.000 0.00 0.00 0.00 6.13
27 28 1.504359 CTGTACGAAAAGTTGCCGGA 58.496 50.000 5.05 0.00 0.00 5.14
28 29 1.459592 CTGTACGAAAAGTTGCCGGAG 59.540 52.381 5.05 0.00 0.00 4.63
29 30 1.068895 TGTACGAAAAGTTGCCGGAGA 59.931 47.619 5.05 0.00 0.00 3.71
30 31 1.458445 GTACGAAAAGTTGCCGGAGAC 59.542 52.381 5.05 1.74 0.00 3.36
31 32 0.179067 ACGAAAAGTTGCCGGAGACA 60.179 50.000 5.05 0.00 0.00 3.41
32 33 0.512952 CGAAAAGTTGCCGGAGACAG 59.487 55.000 5.05 0.00 0.00 3.51
33 34 0.238553 GAAAAGTTGCCGGAGACAGC 59.761 55.000 5.05 0.00 0.00 4.40
34 35 1.507141 AAAAGTTGCCGGAGACAGCG 61.507 55.000 5.05 0.00 0.00 5.18
35 36 3.883744 AAGTTGCCGGAGACAGCGG 62.884 63.158 5.05 0.00 0.00 5.52
36 37 4.373116 GTTGCCGGAGACAGCGGA 62.373 66.667 5.05 0.00 0.00 5.54
37 38 4.069232 TTGCCGGAGACAGCGGAG 62.069 66.667 5.05 0.00 0.00 4.63
48 49 2.362503 AGCGGAGGTGGACGATCA 60.363 61.111 0.00 0.00 36.17 2.92
49 50 1.982395 AGCGGAGGTGGACGATCAA 60.982 57.895 0.00 0.00 36.17 2.57
50 51 1.079405 GCGGAGGTGGACGATCAAA 60.079 57.895 0.00 0.00 0.00 2.69
51 52 0.462047 GCGGAGGTGGACGATCAAAT 60.462 55.000 0.00 0.00 0.00 2.32
52 53 1.571919 CGGAGGTGGACGATCAAATC 58.428 55.000 0.00 0.00 0.00 2.17
63 64 0.026803 GATCAAATCGGCGACACAGC 59.973 55.000 13.76 0.00 0.00 4.40
64 65 0.391661 ATCAAATCGGCGACACAGCT 60.392 50.000 13.76 0.00 37.29 4.24
65 66 1.014044 TCAAATCGGCGACACAGCTC 61.014 55.000 13.76 0.00 37.29 4.09
66 67 1.005037 AAATCGGCGACACAGCTCA 60.005 52.632 13.76 0.00 37.29 4.26
67 68 1.291877 AAATCGGCGACACAGCTCAC 61.292 55.000 13.76 0.00 37.29 3.51
68 69 2.434658 AATCGGCGACACAGCTCACA 62.435 55.000 13.76 0.00 37.29 3.58
69 70 2.825726 ATCGGCGACACAGCTCACAG 62.826 60.000 13.76 0.00 37.29 3.66
70 71 3.418068 GGCGACACAGCTCACAGC 61.418 66.667 0.00 0.00 42.84 4.40
71 72 2.662857 GCGACACAGCTCACAGCA 60.663 61.111 0.00 0.00 45.56 4.41
72 73 2.246739 GCGACACAGCTCACAGCAA 61.247 57.895 0.00 0.00 45.56 3.91
73 74 1.858041 CGACACAGCTCACAGCAAG 59.142 57.895 0.00 0.00 45.56 4.01
74 75 1.573436 GACACAGCTCACAGCAAGC 59.427 57.895 0.00 0.00 45.56 4.01
75 76 1.849976 GACACAGCTCACAGCAAGCC 61.850 60.000 0.00 0.00 45.56 4.35
76 77 1.600076 CACAGCTCACAGCAAGCCT 60.600 57.895 0.00 0.00 45.56 4.58
77 78 1.600076 ACAGCTCACAGCAAGCCTG 60.600 57.895 0.00 0.00 45.56 4.85
86 87 2.047844 GCAAGCCTGCTGACTCGA 60.048 61.111 0.00 0.00 45.74 4.04
87 88 1.669115 GCAAGCCTGCTGACTCGAA 60.669 57.895 0.00 0.00 45.74 3.71
88 89 1.905922 GCAAGCCTGCTGACTCGAAC 61.906 60.000 0.00 0.00 45.74 3.95
89 90 0.601046 CAAGCCTGCTGACTCGAACA 60.601 55.000 0.00 0.00 0.00 3.18
90 91 0.320247 AAGCCTGCTGACTCGAACAG 60.320 55.000 12.93 12.93 38.27 3.16
91 92 1.181741 AGCCTGCTGACTCGAACAGA 61.182 55.000 19.11 7.13 37.54 3.41
92 93 0.319900 GCCTGCTGACTCGAACAGAA 60.320 55.000 19.11 10.55 37.54 3.02
93 94 1.707632 CCTGCTGACTCGAACAGAAG 58.292 55.000 19.11 17.57 39.88 2.85
94 95 1.707632 CTGCTGACTCGAACAGAAGG 58.292 55.000 19.11 7.44 37.38 3.46
95 96 0.319900 TGCTGACTCGAACAGAAGGC 60.320 55.000 19.11 8.27 37.54 4.35
96 97 0.319900 GCTGACTCGAACAGAAGGCA 60.320 55.000 19.11 0.00 37.54 4.75
97 98 1.873903 GCTGACTCGAACAGAAGGCAA 60.874 52.381 19.11 0.00 37.54 4.52
98 99 2.483876 CTGACTCGAACAGAAGGCAAA 58.516 47.619 12.16 0.00 37.54 3.68
99 100 2.478134 CTGACTCGAACAGAAGGCAAAG 59.522 50.000 12.16 0.00 37.54 2.77
100 101 1.801178 GACTCGAACAGAAGGCAAAGG 59.199 52.381 0.00 0.00 0.00 3.11
101 102 1.416401 ACTCGAACAGAAGGCAAAGGA 59.584 47.619 0.00 0.00 0.00 3.36
102 103 2.072298 CTCGAACAGAAGGCAAAGGAG 58.928 52.381 0.00 0.00 0.00 3.69
103 104 1.160137 CGAACAGAAGGCAAAGGAGG 58.840 55.000 0.00 0.00 0.00 4.30
104 105 0.884514 GAACAGAAGGCAAAGGAGGC 59.115 55.000 0.00 0.00 0.00 4.70
105 106 0.185901 AACAGAAGGCAAAGGAGGCA 59.814 50.000 0.00 0.00 36.37 4.75
106 107 0.407139 ACAGAAGGCAAAGGAGGCAT 59.593 50.000 0.00 0.00 36.37 4.40
107 108 0.815734 CAGAAGGCAAAGGAGGCATG 59.184 55.000 0.00 0.00 36.37 4.06
108 109 0.324091 AGAAGGCAAAGGAGGCATGG 60.324 55.000 0.00 0.00 36.37 3.66
109 110 1.953231 GAAGGCAAAGGAGGCATGGC 61.953 60.000 12.14 12.14 39.69 4.40
110 111 2.363406 GGCAAAGGAGGCATGGCT 60.363 61.111 23.58 23.58 36.76 4.75
111 112 2.421399 GGCAAAGGAGGCATGGCTC 61.421 63.158 34.86 34.86 36.76 4.70
112 113 1.679977 GCAAAGGAGGCATGGCTCA 60.680 57.895 40.01 0.00 0.00 4.26
113 114 1.252904 GCAAAGGAGGCATGGCTCAA 61.253 55.000 40.01 0.00 0.00 3.02
114 115 1.259609 CAAAGGAGGCATGGCTCAAA 58.740 50.000 40.01 0.00 0.00 2.69
115 116 1.619827 CAAAGGAGGCATGGCTCAAAA 59.380 47.619 40.01 0.00 0.00 2.44
116 117 2.014010 AAGGAGGCATGGCTCAAAAA 57.986 45.000 40.01 0.00 0.00 1.94
117 118 1.553706 AGGAGGCATGGCTCAAAAAG 58.446 50.000 40.01 0.00 0.00 2.27
118 119 1.076024 AGGAGGCATGGCTCAAAAAGA 59.924 47.619 40.01 0.00 0.00 2.52
119 120 1.895131 GGAGGCATGGCTCAAAAAGAA 59.105 47.619 40.01 0.00 0.00 2.52
120 121 2.498885 GGAGGCATGGCTCAAAAAGAAT 59.501 45.455 40.01 10.61 0.00 2.40
121 122 3.518590 GAGGCATGGCTCAAAAAGAATG 58.481 45.455 36.72 0.00 0.00 2.67
122 123 2.235402 AGGCATGGCTCAAAAAGAATGG 59.765 45.455 17.44 0.00 0.00 3.16
123 124 2.027837 GGCATGGCTCAAAAAGAATGGT 60.028 45.455 12.86 0.00 0.00 3.55
124 125 2.997986 GCATGGCTCAAAAAGAATGGTG 59.002 45.455 0.00 0.00 0.00 4.17
125 126 3.592059 CATGGCTCAAAAAGAATGGTGG 58.408 45.455 0.00 0.00 0.00 4.61
126 127 2.676748 TGGCTCAAAAAGAATGGTGGT 58.323 42.857 0.00 0.00 0.00 4.16
127 128 2.364970 TGGCTCAAAAAGAATGGTGGTG 59.635 45.455 0.00 0.00 0.00 4.17
128 129 2.289010 GGCTCAAAAAGAATGGTGGTGG 60.289 50.000 0.00 0.00 0.00 4.61
129 130 2.289010 GCTCAAAAAGAATGGTGGTGGG 60.289 50.000 0.00 0.00 0.00 4.61
130 131 2.965147 CTCAAAAAGAATGGTGGTGGGT 59.035 45.455 0.00 0.00 0.00 4.51
131 132 2.697751 TCAAAAAGAATGGTGGTGGGTG 59.302 45.455 0.00 0.00 0.00 4.61
132 133 2.433970 CAAAAAGAATGGTGGTGGGTGT 59.566 45.455 0.00 0.00 0.00 4.16
133 134 1.703411 AAAGAATGGTGGTGGGTGTG 58.297 50.000 0.00 0.00 0.00 3.82
134 135 0.850100 AAGAATGGTGGTGGGTGTGA 59.150 50.000 0.00 0.00 0.00 3.58
135 136 1.075601 AGAATGGTGGTGGGTGTGAT 58.924 50.000 0.00 0.00 0.00 3.06
136 137 2.274542 AGAATGGTGGTGGGTGTGATA 58.725 47.619 0.00 0.00 0.00 2.15
137 138 2.647299 AGAATGGTGGTGGGTGTGATAA 59.353 45.455 0.00 0.00 0.00 1.75
138 139 2.507407 ATGGTGGTGGGTGTGATAAC 57.493 50.000 0.00 0.00 0.00 1.89
139 140 0.035598 TGGTGGTGGGTGTGATAACG 59.964 55.000 0.00 0.00 0.00 3.18
140 141 0.675522 GGTGGTGGGTGTGATAACGG 60.676 60.000 0.00 0.00 0.00 4.44
141 142 0.322322 GTGGTGGGTGTGATAACGGA 59.678 55.000 0.00 0.00 0.00 4.69
142 143 0.322322 TGGTGGGTGTGATAACGGAC 59.678 55.000 0.00 0.00 0.00 4.79
143 144 0.738412 GGTGGGTGTGATAACGGACG 60.738 60.000 0.00 0.00 0.00 4.79
144 145 0.738412 GTGGGTGTGATAACGGACGG 60.738 60.000 0.00 0.00 0.00 4.79
145 146 1.153509 GGGTGTGATAACGGACGGG 60.154 63.158 0.00 0.00 0.00 5.28
146 147 1.153509 GGTGTGATAACGGACGGGG 60.154 63.158 0.00 0.00 0.00 5.73
147 148 1.593265 GTGTGATAACGGACGGGGT 59.407 57.895 0.00 0.00 0.00 4.95
148 149 0.738412 GTGTGATAACGGACGGGGTG 60.738 60.000 0.00 0.00 0.00 4.61
149 150 1.812507 GTGATAACGGACGGGGTGC 60.813 63.158 0.00 0.00 0.00 5.01
150 151 2.284276 TGATAACGGACGGGGTGCA 61.284 57.895 0.00 0.00 0.00 4.57
151 152 1.520787 GATAACGGACGGGGTGCAG 60.521 63.158 0.00 0.00 0.00 4.41
152 153 2.918230 GATAACGGACGGGGTGCAGG 62.918 65.000 0.00 0.00 0.00 4.85
163 164 3.948719 GTGCAGGGGGAACGGTGA 61.949 66.667 0.00 0.00 0.00 4.02
164 165 3.948719 TGCAGGGGGAACGGTGAC 61.949 66.667 0.00 0.00 0.00 3.67
165 166 3.637273 GCAGGGGGAACGGTGACT 61.637 66.667 0.00 0.00 0.00 3.41
166 167 2.347490 CAGGGGGAACGGTGACTG 59.653 66.667 0.00 0.00 0.00 3.51
167 168 2.928396 AGGGGGAACGGTGACTGG 60.928 66.667 0.00 0.00 0.00 4.00
168 169 4.029809 GGGGGAACGGTGACTGGG 62.030 72.222 0.00 0.00 0.00 4.45
169 170 2.926242 GGGGAACGGTGACTGGGA 60.926 66.667 0.00 0.00 0.00 4.37
170 171 2.346365 GGGAACGGTGACTGGGAC 59.654 66.667 0.00 0.00 0.00 4.46
171 172 2.048503 GGAACGGTGACTGGGACG 60.049 66.667 0.00 0.00 0.00 4.79
172 173 2.737376 GAACGGTGACTGGGACGC 60.737 66.667 0.00 0.00 0.00 5.19
173 174 4.657824 AACGGTGACTGGGACGCG 62.658 66.667 3.53 3.53 0.00 6.01
175 176 4.778415 CGGTGACTGGGACGCGAG 62.778 72.222 15.93 0.84 0.00 5.03
176 177 4.436998 GGTGACTGGGACGCGAGG 62.437 72.222 15.93 0.00 0.00 4.63
213 214 3.788766 GTCCATGCACACGCCGTC 61.789 66.667 0.00 0.00 37.32 4.79
216 217 3.792047 CATGCACACGCCGTCCTG 61.792 66.667 0.00 0.00 37.32 3.86
226 227 3.849064 CCGTCCTGGCCAAAAACA 58.151 55.556 7.01 0.00 0.00 2.83
227 228 2.119886 CCGTCCTGGCCAAAAACAA 58.880 52.632 7.01 0.00 0.00 2.83
228 229 0.678950 CCGTCCTGGCCAAAAACAAT 59.321 50.000 7.01 0.00 0.00 2.71
229 230 1.889829 CCGTCCTGGCCAAAAACAATA 59.110 47.619 7.01 0.00 0.00 1.90
230 231 2.352323 CCGTCCTGGCCAAAAACAATAC 60.352 50.000 7.01 0.00 0.00 1.89
231 232 2.556622 CGTCCTGGCCAAAAACAATACT 59.443 45.455 7.01 0.00 0.00 2.12
232 233 3.754323 CGTCCTGGCCAAAAACAATACTA 59.246 43.478 7.01 0.00 0.00 1.82
233 234 4.379082 CGTCCTGGCCAAAAACAATACTAC 60.379 45.833 7.01 0.00 0.00 2.73
234 235 4.521256 GTCCTGGCCAAAAACAATACTACA 59.479 41.667 7.01 0.00 0.00 2.74
235 236 5.010213 GTCCTGGCCAAAAACAATACTACAA 59.990 40.000 7.01 0.00 0.00 2.41
236 237 5.242838 TCCTGGCCAAAAACAATACTACAAG 59.757 40.000 7.01 0.00 0.00 3.16
237 238 5.461032 TGGCCAAAAACAATACTACAAGG 57.539 39.130 0.61 0.00 0.00 3.61
238 239 4.242475 GGCCAAAAACAATACTACAAGGC 58.758 43.478 0.00 0.00 37.69 4.35
239 240 4.021456 GGCCAAAAACAATACTACAAGGCT 60.021 41.667 0.00 0.00 38.43 4.58
240 241 5.161358 GCCAAAAACAATACTACAAGGCTC 58.839 41.667 0.00 0.00 35.63 4.70
241 242 5.709966 CCAAAAACAATACTACAAGGCTCC 58.290 41.667 0.00 0.00 0.00 4.70
242 243 5.336451 CCAAAAACAATACTACAAGGCTCCC 60.336 44.000 0.00 0.00 0.00 4.30
243 244 4.929146 AAACAATACTACAAGGCTCCCT 57.071 40.909 0.00 0.00 33.87 4.20
244 245 6.382919 AAAACAATACTACAAGGCTCCCTA 57.617 37.500 0.00 0.00 31.13 3.53
245 246 5.354842 AACAATACTACAAGGCTCCCTAC 57.645 43.478 0.00 0.00 31.13 3.18
246 247 4.621769 ACAATACTACAAGGCTCCCTACT 58.378 43.478 0.00 0.00 31.13 2.57
247 248 5.030820 ACAATACTACAAGGCTCCCTACTT 58.969 41.667 0.00 0.00 31.13 2.24
248 249 5.487845 ACAATACTACAAGGCTCCCTACTTT 59.512 40.000 0.00 0.00 31.13 2.66
249 250 6.012771 ACAATACTACAAGGCTCCCTACTTTT 60.013 38.462 0.00 0.00 31.13 2.27
250 251 7.181485 ACAATACTACAAGGCTCCCTACTTTTA 59.819 37.037 0.00 0.00 31.13 1.52
251 252 5.417754 ACTACAAGGCTCCCTACTTTTAC 57.582 43.478 0.00 0.00 31.13 2.01
252 253 3.329929 ACAAGGCTCCCTACTTTTACG 57.670 47.619 0.00 0.00 31.13 3.18
253 254 2.636403 ACAAGGCTCCCTACTTTTACGT 59.364 45.455 0.00 0.00 31.13 3.57
254 255 3.072038 ACAAGGCTCCCTACTTTTACGTT 59.928 43.478 0.00 0.00 31.13 3.99
255 256 3.329929 AGGCTCCCTACTTTTACGTTG 57.670 47.619 0.00 0.00 28.47 4.10
256 257 1.736126 GGCTCCCTACTTTTACGTTGC 59.264 52.381 0.00 0.00 0.00 4.17
257 258 1.736126 GCTCCCTACTTTTACGTTGCC 59.264 52.381 0.00 0.00 0.00 4.52
258 259 2.353323 CTCCCTACTTTTACGTTGCCC 58.647 52.381 0.00 0.00 0.00 5.36
259 260 1.698532 TCCCTACTTTTACGTTGCCCA 59.301 47.619 0.00 0.00 0.00 5.36
260 261 2.081462 CCCTACTTTTACGTTGCCCAG 58.919 52.381 0.00 0.00 0.00 4.45
261 262 1.467342 CCTACTTTTACGTTGCCCAGC 59.533 52.381 0.00 0.00 0.00 4.85
262 263 2.147958 CTACTTTTACGTTGCCCAGCA 58.852 47.619 0.00 0.00 36.47 4.41
263 264 1.616159 ACTTTTACGTTGCCCAGCAT 58.384 45.000 0.00 0.00 38.76 3.79
264 265 1.539827 ACTTTTACGTTGCCCAGCATC 59.460 47.619 0.00 0.00 38.76 3.91
265 266 1.812571 CTTTTACGTTGCCCAGCATCT 59.187 47.619 0.00 0.00 38.76 2.90
266 267 1.448985 TTTACGTTGCCCAGCATCTC 58.551 50.000 0.00 0.00 38.76 2.75
267 268 0.739462 TTACGTTGCCCAGCATCTCG 60.739 55.000 0.00 0.00 38.76 4.04
268 269 2.572095 TACGTTGCCCAGCATCTCGG 62.572 60.000 0.00 0.00 38.76 4.63
269 270 3.512516 GTTGCCCAGCATCTCGGC 61.513 66.667 0.00 0.00 43.32 5.54
274 275 4.478371 CCAGCATCTCGGCAGGCA 62.478 66.667 0.00 0.00 33.50 4.75
275 276 2.437180 CAGCATCTCGGCAGGCAA 60.437 61.111 0.00 0.00 35.83 4.52
276 277 1.822613 CAGCATCTCGGCAGGCAAT 60.823 57.895 0.00 0.00 35.83 3.56
277 278 1.525535 AGCATCTCGGCAGGCAATC 60.526 57.895 0.00 0.00 35.83 2.67
278 279 2.550101 GCATCTCGGCAGGCAATCC 61.550 63.158 0.00 0.00 0.00 3.01
279 280 1.895707 CATCTCGGCAGGCAATCCC 60.896 63.158 0.00 0.00 0.00 3.85
280 281 2.377810 ATCTCGGCAGGCAATCCCA 61.378 57.895 0.00 0.00 35.39 4.37
281 282 2.615227 ATCTCGGCAGGCAATCCCAC 62.615 60.000 0.00 0.00 35.39 4.61
282 283 4.776322 TCGGCAGGCAATCCCACG 62.776 66.667 0.00 0.00 35.39 4.94
286 287 4.047125 CAGGCAATCCCACGGGGT 62.047 66.667 1.28 0.00 44.74 4.95
287 288 4.047125 AGGCAATCCCACGGGGTG 62.047 66.667 1.28 0.00 44.74 4.61
289 290 4.740822 GCAATCCCACGGGGTGCT 62.741 66.667 19.01 0.00 44.74 4.40
290 291 2.994699 CAATCCCACGGGGTGCTA 59.005 61.111 1.28 0.00 44.74 3.49
291 292 1.531748 CAATCCCACGGGGTGCTAT 59.468 57.895 1.28 0.00 44.74 2.97
292 293 0.106719 CAATCCCACGGGGTGCTATT 60.107 55.000 1.28 0.00 44.74 1.73
293 294 0.182775 AATCCCACGGGGTGCTATTC 59.817 55.000 1.28 0.00 44.74 1.75
294 295 0.986019 ATCCCACGGGGTGCTATTCA 60.986 55.000 1.28 0.00 44.74 2.57
295 296 0.986019 TCCCACGGGGTGCTATTCAT 60.986 55.000 1.28 0.00 44.74 2.57
296 297 0.106719 CCCACGGGGTGCTATTCATT 60.107 55.000 1.28 0.00 38.25 2.57
297 298 1.684869 CCCACGGGGTGCTATTCATTT 60.685 52.381 1.28 0.00 38.25 2.32
298 299 1.405105 CCACGGGGTGCTATTCATTTG 59.595 52.381 0.00 0.00 31.34 2.32
299 300 2.364632 CACGGGGTGCTATTCATTTGA 58.635 47.619 0.00 0.00 0.00 2.69
300 301 2.752354 CACGGGGTGCTATTCATTTGAA 59.248 45.455 0.00 0.00 38.56 2.69
301 302 3.192422 CACGGGGTGCTATTCATTTGAAA 59.808 43.478 0.00 0.00 37.61 2.69
302 303 4.023291 ACGGGGTGCTATTCATTTGAAAT 58.977 39.130 0.00 0.00 37.61 2.17
303 304 4.466015 ACGGGGTGCTATTCATTTGAAATT 59.534 37.500 0.00 0.00 37.61 1.82
304 305 5.043248 CGGGGTGCTATTCATTTGAAATTC 58.957 41.667 0.00 0.00 37.61 2.17
305 306 5.394005 CGGGGTGCTATTCATTTGAAATTCA 60.394 40.000 0.00 0.00 37.61 2.57
306 307 6.405538 GGGGTGCTATTCATTTGAAATTCAA 58.594 36.000 4.03 4.03 37.61 2.69
317 318 5.665381 TTTGAAATTCAAATTTGCCGGAC 57.335 34.783 16.28 0.00 41.02 4.79
318 319 3.658709 TGAAATTCAAATTTGCCGGACC 58.341 40.909 13.54 2.05 38.64 4.46
319 320 3.323403 TGAAATTCAAATTTGCCGGACCT 59.677 39.130 13.54 0.00 38.64 3.85
320 321 3.317603 AATTCAAATTTGCCGGACCTG 57.682 42.857 13.54 0.00 0.00 4.00
321 322 1.988293 TTCAAATTTGCCGGACCTGA 58.012 45.000 13.54 0.00 0.00 3.86
322 323 1.988293 TCAAATTTGCCGGACCTGAA 58.012 45.000 13.54 0.00 0.00 3.02
323 324 2.524306 TCAAATTTGCCGGACCTGAAT 58.476 42.857 13.54 0.00 0.00 2.57
324 325 2.230992 TCAAATTTGCCGGACCTGAATG 59.769 45.455 13.54 0.00 0.00 2.67
325 326 1.185315 AATTTGCCGGACCTGAATGG 58.815 50.000 5.05 0.00 42.93 3.16
326 327 0.331278 ATTTGCCGGACCTGAATGGA 59.669 50.000 5.05 0.00 39.71 3.41
327 328 0.608035 TTTGCCGGACCTGAATGGAC 60.608 55.000 5.05 0.00 39.71 4.02
328 329 1.773856 TTGCCGGACCTGAATGGACA 61.774 55.000 5.05 0.00 39.71 4.02
329 330 1.224592 GCCGGACCTGAATGGACAT 59.775 57.895 5.05 0.00 39.71 3.06
330 331 0.394352 GCCGGACCTGAATGGACATT 60.394 55.000 5.05 0.00 39.71 2.71
331 332 1.955208 GCCGGACCTGAATGGACATTT 60.955 52.381 5.05 0.00 39.71 2.32
332 333 2.682563 GCCGGACCTGAATGGACATTTA 60.683 50.000 5.05 0.00 39.71 1.40
333 334 3.616219 CCGGACCTGAATGGACATTTAA 58.384 45.455 0.00 0.00 39.71 1.52
334 335 4.013728 CCGGACCTGAATGGACATTTAAA 58.986 43.478 0.00 0.00 39.71 1.52
335 336 4.461081 CCGGACCTGAATGGACATTTAAAA 59.539 41.667 0.00 0.00 39.71 1.52
336 337 5.393027 CCGGACCTGAATGGACATTTAAAAG 60.393 44.000 0.00 0.00 39.71 2.27
337 338 5.414454 CGGACCTGAATGGACATTTAAAAGA 59.586 40.000 0.00 0.00 39.71 2.52
338 339 6.095440 CGGACCTGAATGGACATTTAAAAGAT 59.905 38.462 0.00 0.00 39.71 2.40
339 340 7.260603 GGACCTGAATGGACATTTAAAAGATG 58.739 38.462 0.00 0.00 39.71 2.90
340 341 6.633856 ACCTGAATGGACATTTAAAAGATGC 58.366 36.000 0.00 0.00 39.71 3.91
341 342 5.745294 CCTGAATGGACATTTAAAAGATGCG 59.255 40.000 0.00 0.00 38.35 4.73
342 343 5.649557 TGAATGGACATTTAAAAGATGCGG 58.350 37.500 0.00 0.00 0.00 5.69
343 344 5.184864 TGAATGGACATTTAAAAGATGCGGT 59.815 36.000 0.00 0.00 0.00 5.68
344 345 5.659440 ATGGACATTTAAAAGATGCGGTT 57.341 34.783 0.00 0.00 0.00 4.44
345 346 4.804108 TGGACATTTAAAAGATGCGGTTG 58.196 39.130 0.00 0.00 0.00 3.77
346 347 4.173256 GGACATTTAAAAGATGCGGTTGG 58.827 43.478 0.00 0.00 0.00 3.77
347 348 4.082463 GGACATTTAAAAGATGCGGTTGGA 60.082 41.667 0.00 0.00 0.00 3.53
348 349 5.394115 GGACATTTAAAAGATGCGGTTGGAT 60.394 40.000 0.00 0.00 0.00 3.41
349 350 5.410067 ACATTTAAAAGATGCGGTTGGATG 58.590 37.500 0.00 0.00 0.00 3.51
350 351 4.448537 TTTAAAAGATGCGGTTGGATGG 57.551 40.909 0.00 0.00 0.00 3.51
351 352 2.214376 AAAAGATGCGGTTGGATGGA 57.786 45.000 0.00 0.00 0.00 3.41
352 353 1.463674 AAAGATGCGGTTGGATGGAC 58.536 50.000 0.00 0.00 0.00 4.02
353 354 0.744414 AAGATGCGGTTGGATGGACG 60.744 55.000 0.00 0.00 0.00 4.79
354 355 2.124736 ATGCGGTTGGATGGACGG 60.125 61.111 0.00 0.00 0.00 4.79
356 357 4.778143 GCGGTTGGATGGACGGCT 62.778 66.667 0.00 0.00 39.41 5.52
357 358 2.511600 CGGTTGGATGGACGGCTC 60.512 66.667 0.00 0.00 0.00 4.70
358 359 2.124695 GGTTGGATGGACGGCTCC 60.125 66.667 0.00 0.00 37.04 4.70
359 360 2.511600 GTTGGATGGACGGCTCCG 60.512 66.667 6.79 6.79 39.88 4.63
360 361 2.682136 TTGGATGGACGGCTCCGA 60.682 61.111 15.95 0.00 39.88 4.55
361 362 3.014085 TTGGATGGACGGCTCCGAC 62.014 63.158 15.95 8.83 39.88 4.79
362 363 3.458163 GGATGGACGGCTCCGACA 61.458 66.667 15.95 13.20 39.88 4.35
363 364 2.797278 GGATGGACGGCTCCGACAT 61.797 63.158 15.95 17.03 39.88 3.06
364 365 1.144057 GATGGACGGCTCCGACATT 59.856 57.895 15.95 0.04 39.88 2.71
365 366 0.876342 GATGGACGGCTCCGACATTC 60.876 60.000 15.95 5.98 39.88 2.67
366 367 1.613317 ATGGACGGCTCCGACATTCA 61.613 55.000 15.95 3.25 39.88 2.57
367 368 1.144057 GGACGGCTCCGACATTCAT 59.856 57.895 15.95 0.00 42.83 2.57
368 369 1.154205 GGACGGCTCCGACATTCATG 61.154 60.000 15.95 0.00 42.83 3.07
369 370 0.460284 GACGGCTCCGACATTCATGT 60.460 55.000 15.95 0.00 45.16 3.21
377 378 4.201951 ACATTCATGTCCGCGGAC 57.798 55.556 43.88 43.88 44.77 4.79
388 389 2.493030 CGCGGACGGATACCTTGT 59.507 61.111 0.00 0.00 34.97 3.16
389 390 1.588139 CGCGGACGGATACCTTGTC 60.588 63.158 0.00 0.00 34.97 3.18
390 391 1.514087 GCGGACGGATACCTTGTCA 59.486 57.895 0.00 0.00 34.32 3.58
391 392 0.527817 GCGGACGGATACCTTGTCAG 60.528 60.000 0.00 0.00 34.32 3.51
392 393 0.815734 CGGACGGATACCTTGTCAGT 59.184 55.000 0.00 0.00 34.32 3.41
393 394 1.203994 CGGACGGATACCTTGTCAGTT 59.796 52.381 0.00 0.00 34.32 3.16
394 395 2.353406 CGGACGGATACCTTGTCAGTTT 60.353 50.000 0.00 0.00 34.32 2.66
395 396 3.671716 GGACGGATACCTTGTCAGTTTT 58.328 45.455 0.00 0.00 34.32 2.43
396 397 3.435671 GGACGGATACCTTGTCAGTTTTG 59.564 47.826 0.00 0.00 34.32 2.44
397 398 3.408634 ACGGATACCTTGTCAGTTTTGG 58.591 45.455 0.00 0.00 0.00 3.28
398 399 2.161609 CGGATACCTTGTCAGTTTTGGC 59.838 50.000 0.00 0.00 0.00 4.52
399 400 2.161609 GGATACCTTGTCAGTTTTGGCG 59.838 50.000 0.00 0.00 0.00 5.69
400 401 1.600023 TACCTTGTCAGTTTTGGCGG 58.400 50.000 0.00 0.00 0.00 6.13
401 402 0.395173 ACCTTGTCAGTTTTGGCGGT 60.395 50.000 0.00 0.00 0.00 5.68
402 403 0.310854 CCTTGTCAGTTTTGGCGGTC 59.689 55.000 0.00 0.00 0.00 4.79
403 404 0.041312 CTTGTCAGTTTTGGCGGTCG 60.041 55.000 0.00 0.00 0.00 4.79
404 405 1.440938 TTGTCAGTTTTGGCGGTCGG 61.441 55.000 0.00 0.00 0.00 4.79
405 406 2.975799 TCAGTTTTGGCGGTCGGC 60.976 61.111 10.01 10.01 42.51 5.54
414 415 2.125106 GCGGTCGGCCTCAAAGAT 60.125 61.111 3.66 0.00 34.80 2.40
415 416 2.464459 GCGGTCGGCCTCAAAGATG 61.464 63.158 3.66 0.00 34.80 2.90
416 417 1.815421 CGGTCGGCCTCAAAGATGG 60.815 63.158 3.66 0.00 0.00 3.51
422 423 2.486796 GCCTCAAAGATGGCCTGAC 58.513 57.895 3.32 0.00 43.11 3.51
423 424 1.034292 GCCTCAAAGATGGCCTGACC 61.034 60.000 3.32 0.00 43.11 4.02
433 434 4.648626 GCCTGACCAGCCACAGCA 62.649 66.667 0.00 0.00 43.56 4.41
434 435 2.359602 CCTGACCAGCCACAGCAG 60.360 66.667 0.00 0.00 43.56 4.24
435 436 3.054503 CTGACCAGCCACAGCAGC 61.055 66.667 0.00 0.00 43.56 5.25
436 437 4.648626 TGACCAGCCACAGCAGCC 62.649 66.667 0.00 0.00 43.56 4.85
437 438 4.648626 GACCAGCCACAGCAGCCA 62.649 66.667 0.00 0.00 43.56 4.75
438 439 3.933048 GACCAGCCACAGCAGCCAT 62.933 63.158 0.00 0.00 43.56 4.40
439 440 3.449227 CCAGCCACAGCAGCCATG 61.449 66.667 0.00 0.00 43.56 3.66
440 441 2.360726 CAGCCACAGCAGCCATGA 60.361 61.111 0.00 0.00 43.56 3.07
441 442 2.045242 AGCCACAGCAGCCATGAG 60.045 61.111 0.00 0.00 43.56 2.90
442 443 3.823330 GCCACAGCAGCCATGAGC 61.823 66.667 0.00 0.00 44.25 4.26
486 487 5.873179 TTTTTGTCTCTTCTCACGTGTTT 57.127 34.783 16.51 0.00 0.00 2.83
487 488 5.873179 TTTTGTCTCTTCTCACGTGTTTT 57.127 34.783 16.51 0.00 0.00 2.43
488 489 5.873179 TTTGTCTCTTCTCACGTGTTTTT 57.127 34.783 16.51 0.00 0.00 1.94
508 509 6.959671 TTTTTCTGTTGTTGCGAATTTTCT 57.040 29.167 0.00 0.00 0.00 2.52
509 510 6.567769 TTTTCTGTTGTTGCGAATTTTCTC 57.432 33.333 0.00 0.00 0.00 2.87
510 511 5.499139 TTCTGTTGTTGCGAATTTTCTCT 57.501 34.783 0.00 0.00 0.00 3.10
511 512 6.612247 TTCTGTTGTTGCGAATTTTCTCTA 57.388 33.333 0.00 0.00 0.00 2.43
512 513 6.801539 TCTGTTGTTGCGAATTTTCTCTAT 57.198 33.333 0.00 0.00 0.00 1.98
513 514 7.202016 TCTGTTGTTGCGAATTTTCTCTATT 57.798 32.000 0.00 0.00 0.00 1.73
514 515 7.298122 TCTGTTGTTGCGAATTTTCTCTATTC 58.702 34.615 0.00 0.00 0.00 1.75
548 549 5.002464 AGCTGCCAATGCTTAATTACTTG 57.998 39.130 0.00 0.00 37.52 3.16
556 557 8.244113 GCCAATGCTTAATTACTTGAGTAAGTT 58.756 33.333 8.86 6.53 40.10 2.66
562 563 8.388853 GCTTAATTACTTGAGTAAGTTACTGGC 58.611 37.037 20.21 7.46 44.57 4.85
563 564 6.963049 AATTACTTGAGTAAGTTACTGGCG 57.037 37.500 20.21 9.75 44.57 5.69
564 565 3.314541 ACTTGAGTAAGTTACTGGCGG 57.685 47.619 20.21 9.58 44.57 6.13
565 566 2.028385 ACTTGAGTAAGTTACTGGCGGG 60.028 50.000 20.21 8.05 44.57 6.13
566 567 1.927487 TGAGTAAGTTACTGGCGGGA 58.073 50.000 20.21 0.00 39.59 5.14
604 605 1.137513 AACAGCGCGTCTAACTTGTC 58.862 50.000 8.43 0.00 0.00 3.18
606 607 0.710567 CAGCGCGTCTAACTTGTCTG 59.289 55.000 8.43 0.00 0.00 3.51
613 614 3.919197 GCGTCTAACTTGTCTGGAACTAC 59.081 47.826 0.00 0.00 0.00 2.73
615 616 4.483311 GTCTAACTTGTCTGGAACTACCG 58.517 47.826 0.00 0.00 42.61 4.02
617 618 0.320697 ACTTGTCTGGAACTACCGCC 59.679 55.000 0.00 0.00 42.61 6.13
618 619 0.320374 CTTGTCTGGAACTACCGCCA 59.680 55.000 0.00 0.00 42.61 5.69
622 623 1.218316 CTGGAACTACCGCCAGTCC 59.782 63.158 0.00 0.00 45.21 3.85
629 630 1.722636 CTACCGCCAGTCCCTACGAC 61.723 65.000 0.00 0.00 42.32 4.34
631 632 3.066190 CGCCAGTCCCTACGACCA 61.066 66.667 0.00 0.00 43.08 4.02
639 640 0.997363 TCCCTACGACCAGGAAGAGA 59.003 55.000 0.00 0.00 38.00 3.10
682 690 3.992260 ACGTAGTAGCATCCAGATCAC 57.008 47.619 0.00 0.00 41.94 3.06
685 693 3.003378 CGTAGTAGCATCCAGATCACGAA 59.997 47.826 0.00 0.00 0.00 3.85
1029 1066 1.142748 AGCACACCATAGAGCTCGC 59.857 57.895 8.37 2.78 30.05 5.03
1030 1067 1.142748 GCACACCATAGAGCTCGCT 59.857 57.895 8.37 0.00 0.00 4.93
1031 1068 0.873743 GCACACCATAGAGCTCGCTC 60.874 60.000 8.37 10.83 43.03 5.03
1032 1069 0.249238 CACACCATAGAGCTCGCTCC 60.249 60.000 14.83 0.00 43.70 4.70
1049 1086 2.202797 CATCGTCGCCCAGACCTG 60.203 66.667 0.00 0.00 46.92 4.00
1104 1141 2.297701 CCACCATTCCTAATCCAACGG 58.702 52.381 0.00 0.00 0.00 4.44
1110 1147 1.492764 TCCTAATCCAACGGTCCCTC 58.507 55.000 0.00 0.00 0.00 4.30
1125 1174 1.559219 TCCCTCTTTTGATCGATGGCA 59.441 47.619 0.54 0.00 0.00 4.92
1166 1215 2.614057 GCAGTCGATCGAATTGGGATTT 59.386 45.455 21.31 0.00 0.00 2.17
1171 1220 4.446051 GTCGATCGAATTGGGATTTCTCTC 59.554 45.833 21.31 0.00 0.00 3.20
1180 1234 2.503356 TGGGATTTCTCTCCTCTTCTGC 59.497 50.000 0.00 0.00 35.50 4.26
1192 1246 3.254166 TCCTCTTCTGCTTTTGATTGCAC 59.746 43.478 0.00 0.00 35.20 4.57
1196 1250 1.946081 TCTGCTTTTGATTGCACACGA 59.054 42.857 0.00 0.00 35.20 4.35
1298 1352 0.455005 GAAGCAGAAGGCCATCAAGC 59.545 55.000 11.19 13.48 46.50 4.01
1369 3490 3.519579 CTCTGCTTCGTCTTGATCATGT 58.480 45.455 8.33 0.00 0.00 3.21
1439 3576 0.031585 TCTGACGACAACAACCCTCG 59.968 55.000 0.00 0.00 0.00 4.63
1445 3582 1.228154 ACAACAACCCTCGCTTCCC 60.228 57.895 0.00 0.00 0.00 3.97
1570 3707 2.103143 ACGGCGCAGATCTTCTCG 59.897 61.111 16.26 4.80 0.00 4.04
1603 3740 0.410270 AGGAGGAGAAGAAGGACGGT 59.590 55.000 0.00 0.00 0.00 4.83
1604 3741 0.533032 GGAGGAGAAGAAGGACGGTG 59.467 60.000 0.00 0.00 0.00 4.94
1605 3742 1.546961 GAGGAGAAGAAGGACGGTGA 58.453 55.000 0.00 0.00 0.00 4.02
1606 3743 2.104170 GAGGAGAAGAAGGACGGTGAT 58.896 52.381 0.00 0.00 0.00 3.06
1607 3744 3.288964 GAGGAGAAGAAGGACGGTGATA 58.711 50.000 0.00 0.00 0.00 2.15
1608 3745 3.700038 GAGGAGAAGAAGGACGGTGATAA 59.300 47.826 0.00 0.00 0.00 1.75
1609 3746 3.702045 AGGAGAAGAAGGACGGTGATAAG 59.298 47.826 0.00 0.00 0.00 1.73
1610 3747 3.700038 GGAGAAGAAGGACGGTGATAAGA 59.300 47.826 0.00 0.00 0.00 2.10
1611 3748 4.159879 GGAGAAGAAGGACGGTGATAAGAA 59.840 45.833 0.00 0.00 0.00 2.52
1612 3749 5.331876 AGAAGAAGGACGGTGATAAGAAG 57.668 43.478 0.00 0.00 0.00 2.85
1613 3750 4.160626 AGAAGAAGGACGGTGATAAGAAGG 59.839 45.833 0.00 0.00 0.00 3.46
1614 3751 3.709587 AGAAGGACGGTGATAAGAAGGA 58.290 45.455 0.00 0.00 0.00 3.36
1615 3752 3.702045 AGAAGGACGGTGATAAGAAGGAG 59.298 47.826 0.00 0.00 0.00 3.69
1616 3753 2.389715 AGGACGGTGATAAGAAGGAGG 58.610 52.381 0.00 0.00 0.00 4.30
1617 3754 1.413077 GGACGGTGATAAGAAGGAGGG 59.587 57.143 0.00 0.00 0.00 4.30
1803 4025 2.532715 TGGCCTTCCTTCCTGCCT 60.533 61.111 3.32 0.00 44.32 4.75
1804 4026 2.044551 GGCCTTCCTTCCTGCCTG 60.045 66.667 0.00 0.00 40.77 4.85
1805 4027 2.753446 GCCTTCCTTCCTGCCTGC 60.753 66.667 0.00 0.00 0.00 4.85
1806 4028 2.044551 CCTTCCTTCCTGCCTGCC 60.045 66.667 0.00 0.00 0.00 4.85
1938 4167 1.028330 TGCCTGTGCATCTGCTTAGC 61.028 55.000 0.00 0.00 44.23 3.09
1984 4296 4.455606 ACAAGAAAAGTGTGGAGAAGGAG 58.544 43.478 0.00 0.00 0.00 3.69
2016 4329 7.758528 AGAATTGCTGCAGTTATTTTTCAGATC 59.241 33.333 16.64 4.55 0.00 2.75
2017 4330 5.963176 TGCTGCAGTTATTTTTCAGATCA 57.037 34.783 16.64 0.00 0.00 2.92
2018 4331 6.519679 TGCTGCAGTTATTTTTCAGATCAT 57.480 33.333 16.64 0.00 0.00 2.45
2019 4332 6.558009 TGCTGCAGTTATTTTTCAGATCATC 58.442 36.000 16.64 0.00 0.00 2.92
2049 4363 7.712797 TGATGAATTGATCTTCAATGGTGATG 58.287 34.615 6.46 0.00 45.57 3.07
2094 4412 1.703438 GAGCTGCGCATCCAGTCTTG 61.703 60.000 12.24 0.00 35.28 3.02
2110 4428 5.528690 CCAGTCTTGAGTTGACAATCTGAAA 59.471 40.000 0.00 0.00 35.68 2.69
2132 4450 7.384115 TGAAAAGAAAGTTGATGGAGTACTACG 59.616 37.037 0.00 0.00 0.00 3.51
2142 4460 4.870123 TGGAGTACTACGGCAAACTAAA 57.130 40.909 0.00 0.00 0.00 1.85
2146 4464 3.983344 AGTACTACGGCAAACTAAACACG 59.017 43.478 0.00 0.00 0.00 4.49
2148 4466 1.527736 CTACGGCAAACTAAACACGCA 59.472 47.619 0.00 0.00 0.00 5.24
2149 4467 0.028374 ACGGCAAACTAAACACGCAC 59.972 50.000 0.00 0.00 0.00 5.34
2150 4468 0.989805 CGGCAAACTAAACACGCACG 60.990 55.000 0.00 0.00 0.00 5.34
2151 4469 0.659123 GGCAAACTAAACACGCACGG 60.659 55.000 0.00 0.00 0.00 4.94
2234 4554 1.220529 CGGATGCTCGCATGTTATGT 58.779 50.000 9.42 0.00 36.70 2.29
2235 4555 1.599071 CGGATGCTCGCATGTTATGTT 59.401 47.619 9.42 0.00 36.70 2.71
2261 4582 5.657470 TGAATATTTCAGATTCTTCGGCG 57.343 39.130 0.00 0.00 34.88 6.46
2309 4630 2.416296 CGCCAACCACAAGACGTCTATA 60.416 50.000 20.39 0.00 0.00 1.31
2347 4668 3.996921 AGTCAGGCACAAAGAGATGAT 57.003 42.857 0.00 0.00 0.00 2.45
2458 4791 4.275838 GCTTTCAGCAGTCAATGATCTC 57.724 45.455 0.00 0.00 41.89 2.75
2459 4792 3.242349 GCTTTCAGCAGTCAATGATCTCG 60.242 47.826 0.00 0.00 41.89 4.04
2460 4793 3.874392 TTCAGCAGTCAATGATCTCGA 57.126 42.857 0.00 0.00 0.00 4.04
2461 4794 4.397481 TTCAGCAGTCAATGATCTCGAT 57.603 40.909 0.00 0.00 0.00 3.59
2472 4805 6.471198 GTCAATGATCTCGATAACAACGTGTA 59.529 38.462 0.00 0.00 0.00 2.90
2496 4829 1.095600 GGATTCCAAGCTTTCGGACC 58.904 55.000 5.04 1.55 0.00 4.46
2502 4835 1.066454 CCAAGCTTTCGGACCGTTTTT 59.934 47.619 14.79 0.21 0.00 1.94
2695 5078 1.422269 GCAAGCCATGCGCATTTTG 59.578 52.632 22.81 23.70 46.87 2.44
2714 5097 8.637986 GCATTTTGTCCATTCATTACCCTATTA 58.362 33.333 0.00 0.00 0.00 0.98
2747 5130 5.940192 AGTGATAACGTTGCTTCATTTCA 57.060 34.783 11.99 0.00 0.00 2.69
2748 5131 6.500684 AGTGATAACGTTGCTTCATTTCAT 57.499 33.333 11.99 0.00 0.00 2.57
2749 5132 6.913170 AGTGATAACGTTGCTTCATTTCATT 58.087 32.000 11.99 0.00 0.00 2.57
2750 5133 7.370383 AGTGATAACGTTGCTTCATTTCATTT 58.630 30.769 11.99 0.00 0.00 2.32
2751 5134 7.867403 AGTGATAACGTTGCTTCATTTCATTTT 59.133 29.630 11.99 0.00 0.00 1.82
2752 5135 9.123709 GTGATAACGTTGCTTCATTTCATTTTA 57.876 29.630 11.99 0.00 0.00 1.52
2753 5136 9.853555 TGATAACGTTGCTTCATTTCATTTTAT 57.146 25.926 11.99 0.00 0.00 1.40
2804 5197 5.050490 TGCTCTAGAAACAACAACTCAGAC 58.950 41.667 0.00 0.00 0.00 3.51
2811 5204 2.936202 ACAACAACTCAGACTGCCAAT 58.064 42.857 0.00 0.00 0.00 3.16
2820 5222 4.245660 CTCAGACTGCCAATCGAAGTTTA 58.754 43.478 0.00 0.00 0.00 2.01
2822 5224 5.972935 TCAGACTGCCAATCGAAGTTTATA 58.027 37.500 0.00 0.00 0.00 0.98
2868 5271 2.223386 GCGGAGATACCTCGCTATCATC 60.223 54.545 0.00 0.00 40.33 2.92
2878 5281 3.430218 CCTCGCTATCATCGGAATGTTTC 59.570 47.826 0.00 0.00 34.32 2.78
2901 5304 3.183775 CGTTCCACGTCGAGAAAGAAAAT 59.816 43.478 0.00 0.00 36.74 1.82
2941 5344 0.733150 GGCGTCAAAATCTAGTGGCC 59.267 55.000 0.00 0.00 0.00 5.36
3027 5553 7.934665 ACCTGTTAGTTGTGACATTGTAACATA 59.065 33.333 7.83 0.00 31.77 2.29
3028 5554 8.946085 CCTGTTAGTTGTGACATTGTAACATAT 58.054 33.333 7.83 2.97 31.77 1.78
3038 5565 7.441458 GTGACATTGTAACATATTACTCCCTCC 59.559 40.741 0.00 0.00 41.24 4.30
3039 5566 7.126573 TGACATTGTAACATATTACTCCCTCCA 59.873 37.037 0.00 0.00 41.24 3.86
3049 5576 4.844349 TTACTCCCTCCATCCTTGAAAG 57.156 45.455 0.00 0.00 0.00 2.62
3058 5585 5.280215 CCTCCATCCTTGAAAGAGTGTACTT 60.280 44.000 0.00 0.00 0.00 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 3.364964 GCAACTTTTCGTACAGGTCCATG 60.365 47.826 0.00 0.00 0.00 3.66
3 4 2.215196 GCAACTTTTCGTACAGGTCCA 58.785 47.619 0.00 0.00 0.00 4.02
4 5 1.534163 GGCAACTTTTCGTACAGGTCC 59.466 52.381 0.00 0.00 0.00 4.46
5 6 1.193874 CGGCAACTTTTCGTACAGGTC 59.806 52.381 0.00 0.00 0.00 3.85
6 7 1.223187 CGGCAACTTTTCGTACAGGT 58.777 50.000 0.00 0.00 0.00 4.00
7 8 0.515564 CCGGCAACTTTTCGTACAGG 59.484 55.000 0.00 0.00 0.00 4.00
8 9 1.459592 CTCCGGCAACTTTTCGTACAG 59.540 52.381 0.00 0.00 0.00 2.74
9 10 1.068895 TCTCCGGCAACTTTTCGTACA 59.931 47.619 0.00 0.00 0.00 2.90
10 11 1.458445 GTCTCCGGCAACTTTTCGTAC 59.542 52.381 0.00 0.00 0.00 3.67
11 12 1.068895 TGTCTCCGGCAACTTTTCGTA 59.931 47.619 0.00 0.00 0.00 3.43
12 13 0.179067 TGTCTCCGGCAACTTTTCGT 60.179 50.000 0.00 0.00 0.00 3.85
13 14 0.512952 CTGTCTCCGGCAACTTTTCG 59.487 55.000 0.00 0.00 0.00 3.46
14 15 0.238553 GCTGTCTCCGGCAACTTTTC 59.761 55.000 0.00 0.00 42.86 2.29
15 16 1.507141 CGCTGTCTCCGGCAACTTTT 61.507 55.000 0.00 0.00 43.56 2.27
16 17 1.961277 CGCTGTCTCCGGCAACTTT 60.961 57.895 0.00 0.00 43.56 2.66
17 18 2.357517 CGCTGTCTCCGGCAACTT 60.358 61.111 0.00 0.00 43.56 2.66
18 19 4.379243 CCGCTGTCTCCGGCAACT 62.379 66.667 0.00 0.00 43.56 3.16
19 20 4.373116 TCCGCTGTCTCCGGCAAC 62.373 66.667 0.00 0.00 45.19 4.17
20 21 4.069232 CTCCGCTGTCTCCGGCAA 62.069 66.667 0.00 0.00 45.19 4.52
23 24 4.135153 CACCTCCGCTGTCTCCGG 62.135 72.222 0.00 0.00 46.88 5.14
24 25 4.135153 CCACCTCCGCTGTCTCCG 62.135 72.222 0.00 0.00 0.00 4.63
25 26 2.680352 TCCACCTCCGCTGTCTCC 60.680 66.667 0.00 0.00 0.00 3.71
26 27 2.574399 GTCCACCTCCGCTGTCTC 59.426 66.667 0.00 0.00 0.00 3.36
27 28 3.374402 CGTCCACCTCCGCTGTCT 61.374 66.667 0.00 0.00 0.00 3.41
28 29 2.615262 GATCGTCCACCTCCGCTGTC 62.615 65.000 0.00 0.00 0.00 3.51
29 30 2.680352 ATCGTCCACCTCCGCTGT 60.680 61.111 0.00 0.00 0.00 4.40
30 31 2.105128 GATCGTCCACCTCCGCTG 59.895 66.667 0.00 0.00 0.00 5.18
31 32 1.541310 TTTGATCGTCCACCTCCGCT 61.541 55.000 0.00 0.00 0.00 5.52
32 33 0.462047 ATTTGATCGTCCACCTCCGC 60.462 55.000 0.00 0.00 0.00 5.54
33 34 1.571919 GATTTGATCGTCCACCTCCG 58.428 55.000 0.00 0.00 0.00 4.63
44 45 0.026803 GCTGTGTCGCCGATTTGATC 59.973 55.000 0.00 0.00 0.00 2.92
45 46 0.391661 AGCTGTGTCGCCGATTTGAT 60.392 50.000 0.00 0.00 0.00 2.57
46 47 1.005037 AGCTGTGTCGCCGATTTGA 60.005 52.632 0.00 0.00 0.00 2.69
47 48 1.291184 TGAGCTGTGTCGCCGATTTG 61.291 55.000 0.00 0.00 0.00 2.32
48 49 1.005037 TGAGCTGTGTCGCCGATTT 60.005 52.632 0.00 0.00 0.00 2.17
49 50 1.738099 GTGAGCTGTGTCGCCGATT 60.738 57.895 0.00 0.00 0.00 3.34
50 51 2.125912 GTGAGCTGTGTCGCCGAT 60.126 61.111 0.00 0.00 0.00 4.18
51 52 3.558099 CTGTGAGCTGTGTCGCCGA 62.558 63.158 0.00 0.00 0.00 5.54
52 53 3.108289 CTGTGAGCTGTGTCGCCG 61.108 66.667 0.00 0.00 0.00 6.46
53 54 3.418068 GCTGTGAGCTGTGTCGCC 61.418 66.667 0.00 0.00 38.45 5.54
54 55 2.167808 CTTGCTGTGAGCTGTGTCGC 62.168 60.000 0.00 0.00 42.97 5.19
55 56 1.858041 CTTGCTGTGAGCTGTGTCG 59.142 57.895 0.00 0.00 42.97 4.35
56 57 1.573436 GCTTGCTGTGAGCTGTGTC 59.427 57.895 0.00 0.00 42.97 3.67
57 58 1.895707 GGCTTGCTGTGAGCTGTGT 60.896 57.895 0.00 0.00 42.97 3.72
58 59 1.600076 AGGCTTGCTGTGAGCTGTG 60.600 57.895 0.00 0.00 42.97 3.66
59 60 1.600076 CAGGCTTGCTGTGAGCTGT 60.600 57.895 0.00 0.00 42.97 4.40
60 61 2.979197 GCAGGCTTGCTGTGAGCTG 61.979 63.158 14.45 0.00 46.95 4.24
61 62 2.672307 GCAGGCTTGCTGTGAGCT 60.672 61.111 14.45 0.00 46.95 4.09
70 71 0.601046 TGTTCGAGTCAGCAGGCTTG 60.601 55.000 0.00 0.00 0.00 4.01
71 72 0.320247 CTGTTCGAGTCAGCAGGCTT 60.320 55.000 6.73 0.00 0.00 4.35
72 73 1.181741 TCTGTTCGAGTCAGCAGGCT 61.182 55.000 12.74 0.00 33.48 4.58
73 74 0.319900 TTCTGTTCGAGTCAGCAGGC 60.320 55.000 12.74 0.00 33.48 4.85
74 75 1.671261 CCTTCTGTTCGAGTCAGCAGG 60.671 57.143 17.92 17.92 39.18 4.85
75 76 1.707632 CCTTCTGTTCGAGTCAGCAG 58.292 55.000 12.74 11.58 33.48 4.24
76 77 0.319900 GCCTTCTGTTCGAGTCAGCA 60.320 55.000 12.74 4.07 33.48 4.41
77 78 0.319900 TGCCTTCTGTTCGAGTCAGC 60.320 55.000 12.74 5.26 33.48 4.26
78 79 2.154854 TTGCCTTCTGTTCGAGTCAG 57.845 50.000 11.73 11.73 0.00 3.51
79 80 2.483876 CTTTGCCTTCTGTTCGAGTCA 58.516 47.619 0.00 0.00 0.00 3.41
80 81 1.801178 CCTTTGCCTTCTGTTCGAGTC 59.199 52.381 0.00 0.00 0.00 3.36
81 82 1.416401 TCCTTTGCCTTCTGTTCGAGT 59.584 47.619 0.00 0.00 0.00 4.18
82 83 2.072298 CTCCTTTGCCTTCTGTTCGAG 58.928 52.381 0.00 0.00 0.00 4.04
83 84 1.270839 CCTCCTTTGCCTTCTGTTCGA 60.271 52.381 0.00 0.00 0.00 3.71
84 85 1.160137 CCTCCTTTGCCTTCTGTTCG 58.840 55.000 0.00 0.00 0.00 3.95
85 86 0.884514 GCCTCCTTTGCCTTCTGTTC 59.115 55.000 0.00 0.00 0.00 3.18
86 87 0.185901 TGCCTCCTTTGCCTTCTGTT 59.814 50.000 0.00 0.00 0.00 3.16
87 88 0.407139 ATGCCTCCTTTGCCTTCTGT 59.593 50.000 0.00 0.00 0.00 3.41
88 89 0.815734 CATGCCTCCTTTGCCTTCTG 59.184 55.000 0.00 0.00 0.00 3.02
89 90 0.324091 CCATGCCTCCTTTGCCTTCT 60.324 55.000 0.00 0.00 0.00 2.85
90 91 1.953231 GCCATGCCTCCTTTGCCTTC 61.953 60.000 0.00 0.00 0.00 3.46
91 92 1.986210 GCCATGCCTCCTTTGCCTT 60.986 57.895 0.00 0.00 0.00 4.35
92 93 2.363406 GCCATGCCTCCTTTGCCT 60.363 61.111 0.00 0.00 0.00 4.75
93 94 2.363406 AGCCATGCCTCCTTTGCC 60.363 61.111 0.00 0.00 0.00 4.52
94 95 1.252904 TTGAGCCATGCCTCCTTTGC 61.253 55.000 0.47 0.00 0.00 3.68
95 96 1.259609 TTTGAGCCATGCCTCCTTTG 58.740 50.000 0.47 0.00 0.00 2.77
96 97 2.014010 TTTTGAGCCATGCCTCCTTT 57.986 45.000 0.47 0.00 0.00 3.11
97 98 1.897802 CTTTTTGAGCCATGCCTCCTT 59.102 47.619 0.47 0.00 0.00 3.36
98 99 1.076024 TCTTTTTGAGCCATGCCTCCT 59.924 47.619 0.47 0.00 0.00 3.69
99 100 1.549203 TCTTTTTGAGCCATGCCTCC 58.451 50.000 0.47 0.00 0.00 4.30
100 101 3.518590 CATTCTTTTTGAGCCATGCCTC 58.481 45.455 0.00 0.00 0.00 4.70
101 102 2.235402 CCATTCTTTTTGAGCCATGCCT 59.765 45.455 0.00 0.00 0.00 4.75
102 103 2.027837 ACCATTCTTTTTGAGCCATGCC 60.028 45.455 0.00 0.00 0.00 4.40
103 104 2.997986 CACCATTCTTTTTGAGCCATGC 59.002 45.455 0.00 0.00 0.00 4.06
104 105 3.007182 ACCACCATTCTTTTTGAGCCATG 59.993 43.478 0.00 0.00 0.00 3.66
105 106 3.007182 CACCACCATTCTTTTTGAGCCAT 59.993 43.478 0.00 0.00 0.00 4.40
106 107 2.364970 CACCACCATTCTTTTTGAGCCA 59.635 45.455 0.00 0.00 0.00 4.75
107 108 2.289010 CCACCACCATTCTTTTTGAGCC 60.289 50.000 0.00 0.00 0.00 4.70
108 109 2.289010 CCCACCACCATTCTTTTTGAGC 60.289 50.000 0.00 0.00 0.00 4.26
109 110 2.965147 ACCCACCACCATTCTTTTTGAG 59.035 45.455 0.00 0.00 0.00 3.02
110 111 2.697751 CACCCACCACCATTCTTTTTGA 59.302 45.455 0.00 0.00 0.00 2.69
111 112 2.433970 ACACCCACCACCATTCTTTTTG 59.566 45.455 0.00 0.00 0.00 2.44
112 113 2.433970 CACACCCACCACCATTCTTTTT 59.566 45.455 0.00 0.00 0.00 1.94
113 114 2.038659 CACACCCACCACCATTCTTTT 58.961 47.619 0.00 0.00 0.00 2.27
114 115 1.216678 TCACACCCACCACCATTCTTT 59.783 47.619 0.00 0.00 0.00 2.52
115 116 0.850100 TCACACCCACCACCATTCTT 59.150 50.000 0.00 0.00 0.00 2.52
116 117 1.075601 ATCACACCCACCACCATTCT 58.924 50.000 0.00 0.00 0.00 2.40
117 118 2.752903 GTTATCACACCCACCACCATTC 59.247 50.000 0.00 0.00 0.00 2.67
118 119 2.802719 GTTATCACACCCACCACCATT 58.197 47.619 0.00 0.00 0.00 3.16
119 120 1.339631 CGTTATCACACCCACCACCAT 60.340 52.381 0.00 0.00 0.00 3.55
120 121 0.035598 CGTTATCACACCCACCACCA 59.964 55.000 0.00 0.00 0.00 4.17
121 122 0.675522 CCGTTATCACACCCACCACC 60.676 60.000 0.00 0.00 0.00 4.61
122 123 0.322322 TCCGTTATCACACCCACCAC 59.678 55.000 0.00 0.00 0.00 4.16
123 124 0.322322 GTCCGTTATCACACCCACCA 59.678 55.000 0.00 0.00 0.00 4.17
124 125 0.738412 CGTCCGTTATCACACCCACC 60.738 60.000 0.00 0.00 0.00 4.61
125 126 0.738412 CCGTCCGTTATCACACCCAC 60.738 60.000 0.00 0.00 0.00 4.61
126 127 1.592743 CCGTCCGTTATCACACCCA 59.407 57.895 0.00 0.00 0.00 4.51
127 128 1.153509 CCCGTCCGTTATCACACCC 60.154 63.158 0.00 0.00 0.00 4.61
128 129 1.153509 CCCCGTCCGTTATCACACC 60.154 63.158 0.00 0.00 0.00 4.16
129 130 0.738412 CACCCCGTCCGTTATCACAC 60.738 60.000 0.00 0.00 0.00 3.82
130 131 1.592743 CACCCCGTCCGTTATCACA 59.407 57.895 0.00 0.00 0.00 3.58
131 132 1.812507 GCACCCCGTCCGTTATCAC 60.813 63.158 0.00 0.00 0.00 3.06
132 133 2.233605 CTGCACCCCGTCCGTTATCA 62.234 60.000 0.00 0.00 0.00 2.15
133 134 1.520787 CTGCACCCCGTCCGTTATC 60.521 63.158 0.00 0.00 0.00 1.75
134 135 2.582436 CTGCACCCCGTCCGTTAT 59.418 61.111 0.00 0.00 0.00 1.89
135 136 3.697747 CCTGCACCCCGTCCGTTA 61.698 66.667 0.00 0.00 0.00 3.18
146 147 3.948719 TCACCGTTCCCCCTGCAC 61.949 66.667 0.00 0.00 0.00 4.57
147 148 3.948719 GTCACCGTTCCCCCTGCA 61.949 66.667 0.00 0.00 0.00 4.41
148 149 3.637273 AGTCACCGTTCCCCCTGC 61.637 66.667 0.00 0.00 0.00 4.85
149 150 2.347490 CAGTCACCGTTCCCCCTG 59.653 66.667 0.00 0.00 0.00 4.45
150 151 2.928396 CCAGTCACCGTTCCCCCT 60.928 66.667 0.00 0.00 0.00 4.79
151 152 4.029809 CCCAGTCACCGTTCCCCC 62.030 72.222 0.00 0.00 0.00 5.40
152 153 2.926242 TCCCAGTCACCGTTCCCC 60.926 66.667 0.00 0.00 0.00 4.81
153 154 2.346365 GTCCCAGTCACCGTTCCC 59.654 66.667 0.00 0.00 0.00 3.97
154 155 2.048503 CGTCCCAGTCACCGTTCC 60.049 66.667 0.00 0.00 0.00 3.62
155 156 2.737376 GCGTCCCAGTCACCGTTC 60.737 66.667 0.00 0.00 0.00 3.95
156 157 4.657824 CGCGTCCCAGTCACCGTT 62.658 66.667 0.00 0.00 0.00 4.44
158 159 4.778415 CTCGCGTCCCAGTCACCG 62.778 72.222 5.77 0.00 0.00 4.94
159 160 4.436998 CCTCGCGTCCCAGTCACC 62.437 72.222 5.77 0.00 0.00 4.02
196 197 3.788766 GACGGCGTGTGCATGGAC 61.789 66.667 21.19 10.90 45.35 4.02
199 200 3.792047 CAGGACGGCGTGTGCATG 61.792 66.667 21.19 7.48 45.35 4.06
209 210 0.678950 ATTGTTTTTGGCCAGGACGG 59.321 50.000 5.11 0.00 38.11 4.79
210 211 2.556622 AGTATTGTTTTTGGCCAGGACG 59.443 45.455 5.11 0.00 0.00 4.79
211 212 4.521256 TGTAGTATTGTTTTTGGCCAGGAC 59.479 41.667 5.11 6.91 0.00 3.85
212 213 4.730966 TGTAGTATTGTTTTTGGCCAGGA 58.269 39.130 5.11 0.00 0.00 3.86
213 214 5.461032 TTGTAGTATTGTTTTTGGCCAGG 57.539 39.130 5.11 0.00 0.00 4.45
214 215 5.469479 CCTTGTAGTATTGTTTTTGGCCAG 58.531 41.667 5.11 0.00 0.00 4.85
215 216 4.262249 GCCTTGTAGTATTGTTTTTGGCCA 60.262 41.667 0.00 0.00 0.00 5.36
216 217 4.021456 AGCCTTGTAGTATTGTTTTTGGCC 60.021 41.667 0.00 0.00 37.56 5.36
217 218 5.134202 AGCCTTGTAGTATTGTTTTTGGC 57.866 39.130 0.00 0.00 37.15 4.52
218 219 5.336451 GGGAGCCTTGTAGTATTGTTTTTGG 60.336 44.000 0.00 0.00 0.00 3.28
219 220 5.476945 AGGGAGCCTTGTAGTATTGTTTTTG 59.523 40.000 0.00 0.00 0.00 2.44
220 221 5.641155 AGGGAGCCTTGTAGTATTGTTTTT 58.359 37.500 0.00 0.00 0.00 1.94
221 222 5.256806 AGGGAGCCTTGTAGTATTGTTTT 57.743 39.130 0.00 0.00 0.00 2.43
222 223 4.929146 AGGGAGCCTTGTAGTATTGTTT 57.071 40.909 0.00 0.00 0.00 2.83
223 224 5.030820 AGTAGGGAGCCTTGTAGTATTGTT 58.969 41.667 0.00 0.00 34.61 2.83
224 225 4.621769 AGTAGGGAGCCTTGTAGTATTGT 58.378 43.478 0.00 0.00 34.61 2.71
225 226 5.615925 AAGTAGGGAGCCTTGTAGTATTG 57.384 43.478 0.00 0.00 34.61 1.90
226 227 6.638021 AAAAGTAGGGAGCCTTGTAGTATT 57.362 37.500 0.00 0.00 34.61 1.89
227 228 6.183360 CGTAAAAGTAGGGAGCCTTGTAGTAT 60.183 42.308 0.00 0.00 34.61 2.12
228 229 5.126061 CGTAAAAGTAGGGAGCCTTGTAGTA 59.874 44.000 0.00 0.00 34.61 1.82
229 230 4.081807 CGTAAAAGTAGGGAGCCTTGTAGT 60.082 45.833 0.00 0.00 34.61 2.73
230 231 4.081807 ACGTAAAAGTAGGGAGCCTTGTAG 60.082 45.833 0.00 0.00 34.61 2.74
231 232 3.834231 ACGTAAAAGTAGGGAGCCTTGTA 59.166 43.478 0.00 0.00 34.61 2.41
232 233 2.636403 ACGTAAAAGTAGGGAGCCTTGT 59.364 45.455 0.00 0.00 34.61 3.16
233 234 3.329929 ACGTAAAAGTAGGGAGCCTTG 57.670 47.619 0.00 0.00 34.61 3.61
234 235 3.671716 CAACGTAAAAGTAGGGAGCCTT 58.328 45.455 0.00 0.00 34.61 4.35
235 236 2.614734 GCAACGTAAAAGTAGGGAGCCT 60.615 50.000 0.00 0.00 37.71 4.58
236 237 1.736126 GCAACGTAAAAGTAGGGAGCC 59.264 52.381 0.00 0.00 0.00 4.70
237 238 1.736126 GGCAACGTAAAAGTAGGGAGC 59.264 52.381 0.00 0.00 0.00 4.70
238 239 2.289819 TGGGCAACGTAAAAGTAGGGAG 60.290 50.000 0.00 0.00 37.60 4.30
239 240 1.698532 TGGGCAACGTAAAAGTAGGGA 59.301 47.619 0.00 0.00 37.60 4.20
240 241 2.081462 CTGGGCAACGTAAAAGTAGGG 58.919 52.381 0.00 0.00 37.60 3.53
241 242 1.467342 GCTGGGCAACGTAAAAGTAGG 59.533 52.381 0.00 0.00 37.60 3.18
242 243 2.147958 TGCTGGGCAACGTAAAAGTAG 58.852 47.619 0.00 0.00 34.76 2.57
243 244 2.257691 TGCTGGGCAACGTAAAAGTA 57.742 45.000 0.00 0.00 34.76 2.24
244 245 1.539827 GATGCTGGGCAACGTAAAAGT 59.460 47.619 0.00 0.00 43.62 2.66
245 246 1.812571 AGATGCTGGGCAACGTAAAAG 59.187 47.619 0.00 0.00 43.62 2.27
246 247 1.810151 GAGATGCTGGGCAACGTAAAA 59.190 47.619 0.00 0.00 43.62 1.52
247 248 1.448985 GAGATGCTGGGCAACGTAAA 58.551 50.000 0.00 0.00 43.62 2.01
248 249 0.739462 CGAGATGCTGGGCAACGTAA 60.739 55.000 0.00 0.00 43.62 3.18
249 250 1.153647 CGAGATGCTGGGCAACGTA 60.154 57.895 0.00 0.00 43.62 3.57
250 251 2.434884 CGAGATGCTGGGCAACGT 60.435 61.111 0.00 0.00 43.62 3.99
251 252 3.197790 CCGAGATGCTGGGCAACG 61.198 66.667 0.00 3.73 43.62 4.10
258 259 1.783031 GATTGCCTGCCGAGATGCTG 61.783 60.000 0.00 0.00 0.00 4.41
259 260 1.525535 GATTGCCTGCCGAGATGCT 60.526 57.895 0.00 0.00 0.00 3.79
260 261 2.550101 GGATTGCCTGCCGAGATGC 61.550 63.158 0.00 0.00 0.00 3.91
261 262 1.895707 GGGATTGCCTGCCGAGATG 60.896 63.158 0.00 0.00 0.00 2.90
262 263 2.377810 TGGGATTGCCTGCCGAGAT 61.378 57.895 0.00 0.00 38.45 2.75
263 264 3.008517 TGGGATTGCCTGCCGAGA 61.009 61.111 0.00 0.00 38.45 4.04
264 265 2.825836 GTGGGATTGCCTGCCGAG 60.826 66.667 0.00 0.00 38.45 4.63
265 266 4.776322 CGTGGGATTGCCTGCCGA 62.776 66.667 0.00 0.00 38.45 5.54
278 279 1.405105 CAAATGAATAGCACCCCGTGG 59.595 52.381 0.00 0.00 33.64 4.94
279 280 2.364632 TCAAATGAATAGCACCCCGTG 58.635 47.619 0.00 0.00 36.51 4.94
280 281 2.799126 TCAAATGAATAGCACCCCGT 57.201 45.000 0.00 0.00 0.00 5.28
281 282 4.654091 ATTTCAAATGAATAGCACCCCG 57.346 40.909 0.00 0.00 33.54 5.73
282 283 5.976458 TGAATTTCAAATGAATAGCACCCC 58.024 37.500 0.00 0.00 33.54 4.95
283 284 7.903995 TTTGAATTTCAAATGAATAGCACCC 57.096 32.000 18.29 0.00 41.02 4.61
296 297 4.061596 GGTCCGGCAAATTTGAATTTCAA 58.938 39.130 22.31 7.74 36.52 2.69
297 298 3.323403 AGGTCCGGCAAATTTGAATTTCA 59.677 39.130 22.31 0.00 36.52 2.69
298 299 3.679502 CAGGTCCGGCAAATTTGAATTTC 59.320 43.478 22.31 8.18 36.52 2.17
299 300 3.323403 TCAGGTCCGGCAAATTTGAATTT 59.677 39.130 22.31 0.00 39.07 1.82
300 301 2.896685 TCAGGTCCGGCAAATTTGAATT 59.103 40.909 22.31 0.00 0.00 2.17
301 302 2.524306 TCAGGTCCGGCAAATTTGAAT 58.476 42.857 22.31 0.00 0.00 2.57
302 303 1.988293 TCAGGTCCGGCAAATTTGAA 58.012 45.000 22.31 0.89 0.00 2.69
303 304 1.988293 TTCAGGTCCGGCAAATTTGA 58.012 45.000 22.31 0.00 0.00 2.69
304 305 2.609350 CATTCAGGTCCGGCAAATTTG 58.391 47.619 14.03 14.03 0.00 2.32
305 306 1.550072 CCATTCAGGTCCGGCAAATTT 59.450 47.619 0.00 0.00 0.00 1.82
306 307 1.185315 CCATTCAGGTCCGGCAAATT 58.815 50.000 0.00 0.00 0.00 1.82
307 308 0.331278 TCCATTCAGGTCCGGCAAAT 59.669 50.000 0.00 0.00 39.02 2.32
308 309 0.608035 GTCCATTCAGGTCCGGCAAA 60.608 55.000 0.00 0.00 39.02 3.68
309 310 1.002624 GTCCATTCAGGTCCGGCAA 60.003 57.895 0.00 0.00 39.02 4.52
310 311 1.561769 ATGTCCATTCAGGTCCGGCA 61.562 55.000 0.00 0.00 39.02 5.69
311 312 0.394352 AATGTCCATTCAGGTCCGGC 60.394 55.000 0.00 0.00 39.02 6.13
312 313 2.128771 AAATGTCCATTCAGGTCCGG 57.871 50.000 0.00 0.00 39.02 5.14
313 314 5.414454 TCTTTTAAATGTCCATTCAGGTCCG 59.586 40.000 1.46 0.00 39.02 4.79
314 315 6.834168 TCTTTTAAATGTCCATTCAGGTCC 57.166 37.500 1.46 0.00 39.02 4.46
315 316 6.753744 GCATCTTTTAAATGTCCATTCAGGTC 59.246 38.462 1.46 0.00 39.02 3.85
316 317 6.625740 CGCATCTTTTAAATGTCCATTCAGGT 60.626 38.462 1.46 0.00 39.02 4.00
317 318 5.745294 CGCATCTTTTAAATGTCCATTCAGG 59.255 40.000 1.46 0.00 39.47 3.86
318 319 5.745294 CCGCATCTTTTAAATGTCCATTCAG 59.255 40.000 1.46 0.00 0.00 3.02
319 320 5.184864 ACCGCATCTTTTAAATGTCCATTCA 59.815 36.000 1.46 0.00 0.00 2.57
320 321 5.650543 ACCGCATCTTTTAAATGTCCATTC 58.349 37.500 1.46 0.00 0.00 2.67
321 322 5.659440 ACCGCATCTTTTAAATGTCCATT 57.341 34.783 1.46 0.00 0.00 3.16
322 323 5.410067 CAACCGCATCTTTTAAATGTCCAT 58.590 37.500 1.46 0.00 0.00 3.41
323 324 4.321601 CCAACCGCATCTTTTAAATGTCCA 60.322 41.667 1.46 0.00 0.00 4.02
324 325 4.082463 TCCAACCGCATCTTTTAAATGTCC 60.082 41.667 1.46 0.00 0.00 4.02
325 326 5.054390 TCCAACCGCATCTTTTAAATGTC 57.946 39.130 1.46 0.00 0.00 3.06
326 327 5.410067 CATCCAACCGCATCTTTTAAATGT 58.590 37.500 1.46 0.00 0.00 2.71
327 328 4.805192 CCATCCAACCGCATCTTTTAAATG 59.195 41.667 0.00 0.00 0.00 2.32
328 329 4.709397 TCCATCCAACCGCATCTTTTAAAT 59.291 37.500 0.00 0.00 0.00 1.40
329 330 4.082463 GTCCATCCAACCGCATCTTTTAAA 60.082 41.667 0.00 0.00 0.00 1.52
330 331 3.442273 GTCCATCCAACCGCATCTTTTAA 59.558 43.478 0.00 0.00 0.00 1.52
331 332 3.013921 GTCCATCCAACCGCATCTTTTA 58.986 45.455 0.00 0.00 0.00 1.52
332 333 1.818674 GTCCATCCAACCGCATCTTTT 59.181 47.619 0.00 0.00 0.00 2.27
333 334 1.463674 GTCCATCCAACCGCATCTTT 58.536 50.000 0.00 0.00 0.00 2.52
334 335 0.744414 CGTCCATCCAACCGCATCTT 60.744 55.000 0.00 0.00 0.00 2.40
335 336 1.153369 CGTCCATCCAACCGCATCT 60.153 57.895 0.00 0.00 0.00 2.90
336 337 2.180204 CCGTCCATCCAACCGCATC 61.180 63.158 0.00 0.00 0.00 3.91
337 338 2.124736 CCGTCCATCCAACCGCAT 60.125 61.111 0.00 0.00 0.00 4.73
339 340 4.778143 AGCCGTCCATCCAACCGC 62.778 66.667 0.00 0.00 0.00 5.68
340 341 2.511600 GAGCCGTCCATCCAACCG 60.512 66.667 0.00 0.00 0.00 4.44
341 342 2.124695 GGAGCCGTCCATCCAACC 60.125 66.667 0.00 0.00 43.31 3.77
342 343 2.511600 CGGAGCCGTCCATCCAAC 60.512 66.667 0.00 0.00 44.18 3.77
343 344 2.682136 TCGGAGCCGTCCATCCAA 60.682 61.111 8.96 0.00 44.18 3.53
344 345 3.458163 GTCGGAGCCGTCCATCCA 61.458 66.667 8.96 0.00 44.18 3.41
345 346 2.311688 AATGTCGGAGCCGTCCATCC 62.312 60.000 8.96 0.00 44.18 3.51
346 347 0.876342 GAATGTCGGAGCCGTCCATC 60.876 60.000 8.96 1.34 44.18 3.51
347 348 1.144057 GAATGTCGGAGCCGTCCAT 59.856 57.895 8.96 9.44 44.18 3.41
348 349 1.613317 ATGAATGTCGGAGCCGTCCA 61.613 55.000 8.96 7.55 44.18 4.02
349 350 1.144057 ATGAATGTCGGAGCCGTCC 59.856 57.895 8.96 1.92 40.74 4.79
350 351 0.460284 ACATGAATGTCGGAGCCGTC 60.460 55.000 8.96 3.93 35.87 4.79
351 352 0.460284 GACATGAATGTCGGAGCCGT 60.460 55.000 8.96 0.00 46.46 5.68
352 353 2.301505 GACATGAATGTCGGAGCCG 58.698 57.895 7.63 1.74 46.46 5.52
360 361 1.809619 CGTCCGCGGACATGAATGT 60.810 57.895 46.26 0.00 44.77 2.71
361 362 3.005898 CGTCCGCGGACATGAATG 58.994 61.111 46.26 30.57 44.77 2.67
371 372 1.588139 GACAAGGTATCCGTCCGCG 60.588 63.158 0.00 0.00 37.95 6.46
372 373 0.527817 CTGACAAGGTATCCGTCCGC 60.528 60.000 0.00 0.00 0.00 5.54
373 374 0.815734 ACTGACAAGGTATCCGTCCG 59.184 55.000 0.00 0.00 0.00 4.79
374 375 3.329929 AAACTGACAAGGTATCCGTCC 57.670 47.619 0.00 0.00 0.00 4.79
375 376 3.435671 CCAAAACTGACAAGGTATCCGTC 59.564 47.826 0.00 0.00 0.00 4.79
376 377 3.408634 CCAAAACTGACAAGGTATCCGT 58.591 45.455 0.00 0.00 0.00 4.69
377 378 2.161609 GCCAAAACTGACAAGGTATCCG 59.838 50.000 0.00 0.00 0.00 4.18
378 379 2.161609 CGCCAAAACTGACAAGGTATCC 59.838 50.000 0.00 0.00 0.00 2.59
379 380 2.161609 CCGCCAAAACTGACAAGGTATC 59.838 50.000 0.00 0.00 0.00 2.24
380 381 2.159382 CCGCCAAAACTGACAAGGTAT 58.841 47.619 0.00 0.00 0.00 2.73
381 382 1.134037 ACCGCCAAAACTGACAAGGTA 60.134 47.619 0.00 0.00 0.00 3.08
382 383 0.395173 ACCGCCAAAACTGACAAGGT 60.395 50.000 0.00 0.00 0.00 3.50
383 384 0.310854 GACCGCCAAAACTGACAAGG 59.689 55.000 0.00 0.00 0.00 3.61
384 385 0.041312 CGACCGCCAAAACTGACAAG 60.041 55.000 0.00 0.00 0.00 3.16
385 386 1.440938 CCGACCGCCAAAACTGACAA 61.441 55.000 0.00 0.00 0.00 3.18
386 387 1.890041 CCGACCGCCAAAACTGACA 60.890 57.895 0.00 0.00 0.00 3.58
387 388 2.943653 CCGACCGCCAAAACTGAC 59.056 61.111 0.00 0.00 0.00 3.51
388 389 2.975799 GCCGACCGCCAAAACTGA 60.976 61.111 0.00 0.00 0.00 3.41
397 398 2.125106 ATCTTTGAGGCCGACCGC 60.125 61.111 0.00 0.00 42.76 5.68
398 399 1.815421 CCATCTTTGAGGCCGACCG 60.815 63.158 0.00 0.00 42.76 4.79
399 400 2.115291 GCCATCTTTGAGGCCGACC 61.115 63.158 0.00 0.00 45.18 4.79
400 401 3.502572 GCCATCTTTGAGGCCGAC 58.497 61.111 0.00 0.00 45.18 4.79
405 406 0.329261 TGGTCAGGCCATCTTTGAGG 59.671 55.000 5.01 0.00 43.61 3.86
406 407 3.963733 TGGTCAGGCCATCTTTGAG 57.036 52.632 5.01 0.00 43.61 3.02
417 418 2.359602 CTGCTGTGGCTGGTCAGG 60.360 66.667 0.00 0.00 39.59 3.86
418 419 3.054503 GCTGCTGTGGCTGGTCAG 61.055 66.667 0.00 0.00 39.59 3.51
419 420 4.648626 GGCTGCTGTGGCTGGTCA 62.649 66.667 0.00 0.00 39.59 4.02
420 421 3.933048 ATGGCTGCTGTGGCTGGTC 62.933 63.158 0.00 0.00 39.59 4.02
421 422 3.975591 ATGGCTGCTGTGGCTGGT 61.976 61.111 0.00 0.00 39.59 4.00
422 423 3.449227 CATGGCTGCTGTGGCTGG 61.449 66.667 0.00 0.00 39.59 4.85
423 424 2.360726 TCATGGCTGCTGTGGCTG 60.361 61.111 0.00 0.00 39.59 4.85
424 425 2.045242 CTCATGGCTGCTGTGGCT 60.045 61.111 0.00 0.00 39.59 4.75
425 426 3.823330 GCTCATGGCTGCTGTGGC 61.823 66.667 0.00 1.80 38.06 5.01
426 427 2.360726 TGCTCATGGCTGCTGTGG 60.361 61.111 0.00 0.00 42.39 4.17
427 428 2.875485 GTGCTCATGGCTGCTGTG 59.125 61.111 0.00 0.00 42.39 3.66
428 429 2.745100 CGTGCTCATGGCTGCTGT 60.745 61.111 0.00 0.00 42.39 4.40
429 430 2.435410 TCGTGCTCATGGCTGCTG 60.435 61.111 0.00 0.00 42.39 4.41
430 431 2.125229 CTCGTGCTCATGGCTGCT 60.125 61.111 0.00 0.00 42.39 4.24
431 432 3.873883 GCTCGTGCTCATGGCTGC 61.874 66.667 1.41 0.00 42.39 5.25
432 433 3.561213 CGCTCGTGCTCATGGCTG 61.561 66.667 7.97 1.63 42.39 4.85
464 465 5.873179 AAACACGTGAGAAGAGACAAAAA 57.127 34.783 25.01 0.00 0.00 1.94
465 466 5.873179 AAAACACGTGAGAAGAGACAAAA 57.127 34.783 25.01 0.00 0.00 2.44
466 467 5.873179 AAAAACACGTGAGAAGAGACAAA 57.127 34.783 25.01 0.00 0.00 2.83
485 486 6.811170 AGAGAAAATTCGCAACAACAGAAAAA 59.189 30.769 0.00 0.00 0.00 1.94
486 487 6.329496 AGAGAAAATTCGCAACAACAGAAAA 58.671 32.000 0.00 0.00 0.00 2.29
487 488 5.890334 AGAGAAAATTCGCAACAACAGAAA 58.110 33.333 0.00 0.00 0.00 2.52
488 489 5.499139 AGAGAAAATTCGCAACAACAGAA 57.501 34.783 0.00 0.00 0.00 3.02
489 490 6.801539 ATAGAGAAAATTCGCAACAACAGA 57.198 33.333 0.00 0.00 0.00 3.41
490 491 6.247165 CGAATAGAGAAAATTCGCAACAACAG 59.753 38.462 5.41 0.00 46.21 3.16
491 492 6.077197 CGAATAGAGAAAATTCGCAACAACA 58.923 36.000 5.41 0.00 46.21 3.33
492 493 6.526097 CGAATAGAGAAAATTCGCAACAAC 57.474 37.500 5.41 0.00 46.21 3.32
508 509 3.003793 CAGCTCGGTCAATCTCGAATAGA 59.996 47.826 0.00 0.00 39.02 1.98
509 510 3.304257 CAGCTCGGTCAATCTCGAATAG 58.696 50.000 0.00 0.00 34.87 1.73
510 511 2.543861 GCAGCTCGGTCAATCTCGAATA 60.544 50.000 0.00 0.00 34.87 1.75
511 512 1.804372 GCAGCTCGGTCAATCTCGAAT 60.804 52.381 0.00 0.00 34.87 3.34
512 513 0.458543 GCAGCTCGGTCAATCTCGAA 60.459 55.000 0.00 0.00 34.87 3.71
513 514 1.139734 GCAGCTCGGTCAATCTCGA 59.860 57.895 0.00 0.00 0.00 4.04
514 515 1.880340 GGCAGCTCGGTCAATCTCG 60.880 63.158 0.00 0.00 0.00 4.04
515 516 0.391661 TTGGCAGCTCGGTCAATCTC 60.392 55.000 0.00 0.00 0.00 2.75
548 549 1.468736 CGTCCCGCCAGTAACTTACTC 60.469 57.143 0.00 0.00 36.76 2.59
556 557 4.371417 ACTCCCGTCCCGCCAGTA 62.371 66.667 0.00 0.00 0.00 2.74
577 578 4.506654 AGTTAGACGCGCTGTTAATAATGG 59.493 41.667 5.73 0.00 0.00 3.16
606 607 0.685458 TAGGGACTGGCGGTAGTTCC 60.685 60.000 0.00 0.00 45.27 3.62
613 614 3.834799 GGTCGTAGGGACTGGCGG 61.835 72.222 0.00 0.00 45.35 6.13
615 616 2.722201 CCTGGTCGTAGGGACTGGC 61.722 68.421 0.00 0.00 45.35 4.85
617 618 0.818296 CTTCCTGGTCGTAGGGACTG 59.182 60.000 0.00 0.00 45.35 3.51
618 619 0.702902 TCTTCCTGGTCGTAGGGACT 59.297 55.000 0.00 0.00 45.35 3.85
622 623 2.092861 TCTCTCTCTTCCTGGTCGTAGG 60.093 54.545 0.00 0.00 39.29 3.18
629 630 6.374053 GGATTTTTCTTTCTCTCTCTTCCTGG 59.626 42.308 0.00 0.00 0.00 4.45
631 632 7.084268 TGGATTTTTCTTTCTCTCTCTTCCT 57.916 36.000 0.00 0.00 0.00 3.36
639 640 5.877564 GTCGATCCTGGATTTTTCTTTCTCT 59.122 40.000 11.17 0.00 0.00 3.10
677 685 1.069378 GACACCGACCGTTCGTGATC 61.069 60.000 0.61 0.00 44.28 2.92
682 690 3.095278 CGTGACACCGACCGTTCG 61.095 66.667 0.00 0.00 45.44 3.95
685 693 3.509137 ATTGCGTGACACCGACCGT 62.509 57.895 0.00 0.00 0.00 4.83
1029 1066 2.105128 GTCTGGGCGACGATGGAG 59.895 66.667 0.00 0.00 32.04 3.86
1030 1067 3.458163 GGTCTGGGCGACGATGGA 61.458 66.667 0.00 0.00 43.79 3.41
1031 1068 3.461773 AGGTCTGGGCGACGATGG 61.462 66.667 0.00 0.00 43.79 3.51
1032 1069 2.202797 CAGGTCTGGGCGACGATG 60.203 66.667 0.00 0.00 43.79 3.84
1104 1141 1.943340 GCCATCGATCAAAAGAGGGAC 59.057 52.381 0.00 0.00 40.43 4.46
1110 1147 1.097232 TGGCTGCCATCGATCAAAAG 58.903 50.000 19.30 0.00 0.00 2.27
1125 1174 3.019564 GCAAGTAATCACCTTCATGGCT 58.980 45.455 0.00 0.00 40.22 4.75
1166 1215 5.243981 CAATCAAAAGCAGAAGAGGAGAGA 58.756 41.667 0.00 0.00 0.00 3.10
1171 1220 3.005050 TGTGCAATCAAAAGCAGAAGAGG 59.995 43.478 0.00 0.00 42.14 3.69
1180 1234 1.662876 CCGGTCGTGTGCAATCAAAAG 60.663 52.381 0.00 0.00 0.00 2.27
1192 1246 0.165944 GATCAGCAAAACCGGTCGTG 59.834 55.000 8.04 10.64 0.00 4.35
1196 1250 1.909700 ACATGATCAGCAAAACCGGT 58.090 45.000 0.00 0.00 0.00 5.28
1298 1352 4.803426 GTGGAGCGCGGAGACCAG 62.803 72.222 8.83 0.00 32.89 4.00
1369 3490 4.141367 TGGATGACCGCTAATTAATTCCCA 60.141 41.667 3.39 0.00 39.42 4.37
1546 3683 2.740714 GATCTGCGCCGTGGTGAAC 61.741 63.158 4.18 0.00 0.00 3.18
1550 3687 2.125512 GAAGATCTGCGCCGTGGT 60.126 61.111 4.18 0.00 0.00 4.16
1603 3740 2.454336 TCTCGCCCTCCTTCTTATCA 57.546 50.000 0.00 0.00 0.00 2.15
1604 3741 2.959707 TCTTCTCGCCCTCCTTCTTATC 59.040 50.000 0.00 0.00 0.00 1.75
1605 3742 3.033659 TCTTCTCGCCCTCCTTCTTAT 57.966 47.619 0.00 0.00 0.00 1.73
1606 3743 2.496470 GTTCTTCTCGCCCTCCTTCTTA 59.504 50.000 0.00 0.00 0.00 2.10
1607 3744 1.276705 GTTCTTCTCGCCCTCCTTCTT 59.723 52.381 0.00 0.00 0.00 2.52
1608 3745 0.899019 GTTCTTCTCGCCCTCCTTCT 59.101 55.000 0.00 0.00 0.00 2.85
1609 3746 0.458716 CGTTCTTCTCGCCCTCCTTC 60.459 60.000 0.00 0.00 0.00 3.46
1610 3747 0.898789 TCGTTCTTCTCGCCCTCCTT 60.899 55.000 0.00 0.00 0.00 3.36
1611 3748 1.304217 TCGTTCTTCTCGCCCTCCT 60.304 57.895 0.00 0.00 0.00 3.69
1612 3749 1.153804 GTCGTTCTTCTCGCCCTCC 60.154 63.158 0.00 0.00 0.00 4.30
1613 3750 1.514443 CGTCGTTCTTCTCGCCCTC 60.514 63.158 0.00 0.00 0.00 4.30
1614 3751 2.567049 CGTCGTTCTTCTCGCCCT 59.433 61.111 0.00 0.00 0.00 5.19
1615 3752 3.179939 GCGTCGTTCTTCTCGCCC 61.180 66.667 0.00 0.00 42.33 6.13
1616 3753 3.533691 CGCGTCGTTCTTCTCGCC 61.534 66.667 0.00 0.00 44.73 5.54
1617 3754 3.533691 CCGCGTCGTTCTTCTCGC 61.534 66.667 4.92 0.00 44.23 5.03
1761 3967 1.248101 AAAGTGTACAATGGCGGGGC 61.248 55.000 0.00 0.00 0.00 5.80
1805 4027 0.242286 CAGGTAGGCTGATCGATCGG 59.758 60.000 26.79 26.79 36.26 4.18
1806 4028 0.387878 GCAGGTAGGCTGATCGATCG 60.388 60.000 20.03 9.36 0.00 3.69
1938 4167 8.882736 TGTAATTCTGTATCTGCACATTACAAG 58.117 33.333 0.00 0.00 32.53 3.16
2018 4331 9.594478 CCATTGAAGATCAATTCATCAATTTGA 57.406 29.630 0.75 0.75 45.72 2.69
2019 4332 9.378551 ACCATTGAAGATCAATTCATCAATTTG 57.621 29.630 2.93 0.00 45.72 2.32
2029 4342 7.949690 TTCTCATCACCATTGAAGATCAATT 57.050 32.000 2.93 0.00 44.03 2.32
2043 4357 8.899427 TCAGATCTGATTATTTTCTCATCACC 57.101 34.615 21.67 0.00 34.14 4.02
2094 4412 8.184192 TCAACTTTCTTTTCAGATTGTCAACTC 58.816 33.333 0.00 0.00 0.00 3.01
2110 4428 5.721232 CCGTAGTACTCCATCAACTTTCTT 58.279 41.667 0.00 0.00 0.00 2.52
2132 4450 0.659123 CCGTGCGTGTTTAGTTTGCC 60.659 55.000 0.00 0.00 0.00 4.52
2142 4460 1.296056 GCCATCTAAACCGTGCGTGT 61.296 55.000 0.00 0.00 0.00 4.49
2146 4464 1.134491 ACCTAGCCATCTAAACCGTGC 60.134 52.381 0.00 0.00 0.00 5.34
2148 4466 2.169978 GGAACCTAGCCATCTAAACCGT 59.830 50.000 0.00 0.00 0.00 4.83
2149 4467 2.434702 AGGAACCTAGCCATCTAAACCG 59.565 50.000 0.00 0.00 0.00 4.44
2150 4468 4.505324 AAGGAACCTAGCCATCTAAACC 57.495 45.455 0.00 0.00 0.00 3.27
2151 4469 5.125578 CCAAAAGGAACCTAGCCATCTAAAC 59.874 44.000 0.00 0.00 0.00 2.01
2261 4582 1.336887 TGACACCGCTGAAAGAGTAGC 60.337 52.381 0.00 0.00 34.07 3.58
2278 4599 1.599518 TGGTTGGCGGACACATGAC 60.600 57.895 0.00 0.00 0.00 3.06
2347 4668 4.566004 CACGAGAGACCAACCTGAATTTA 58.434 43.478 0.00 0.00 0.00 1.40
2456 4789 6.456447 TCCTTTTTACACGTTGTTATCGAG 57.544 37.500 0.00 0.00 0.00 4.04
2457 4790 7.360269 GGAATCCTTTTTACACGTTGTTATCGA 60.360 37.037 0.00 0.00 0.00 3.59
2458 4791 6.739550 GGAATCCTTTTTACACGTTGTTATCG 59.260 38.462 0.00 0.00 0.00 2.92
2459 4792 7.586747 TGGAATCCTTTTTACACGTTGTTATC 58.413 34.615 0.00 0.00 0.00 1.75
2460 4793 7.513371 TGGAATCCTTTTTACACGTTGTTAT 57.487 32.000 0.00 0.00 0.00 1.89
2461 4794 6.939132 TGGAATCCTTTTTACACGTTGTTA 57.061 33.333 0.00 0.00 0.00 2.41
2472 4805 3.895041 TCCGAAAGCTTGGAATCCTTTTT 59.105 39.130 0.00 0.00 0.00 1.94
2502 4835 9.173021 ACCGATGAAAACATTCATGAGTAATAA 57.827 29.630 8.66 0.00 41.38 1.40
2514 4847 3.930848 GGACTCGTACCGATGAAAACATT 59.069 43.478 0.00 0.00 34.61 2.71
2648 5023 5.004345 GTCCGTTGAACACAAAAAGATGTTG 59.996 40.000 0.00 0.00 39.13 3.33
2659 5034 1.885388 CAGCCGTCCGTTGAACACA 60.885 57.895 0.00 0.00 0.00 3.72
2695 5078 9.349713 TCAAACATAATAGGGTAATGAATGGAC 57.650 33.333 0.00 0.00 0.00 4.02
2714 5097 6.426937 AGCAACGTTATCACTAAGTCAAACAT 59.573 34.615 0.00 0.00 0.00 2.71
2804 5197 7.171508 TCAGCTAATATAAACTTCGATTGGCAG 59.828 37.037 4.91 0.00 38.00 4.85
2811 5204 9.684448 CTTCAGATCAGCTAATATAAACTTCGA 57.316 33.333 0.00 0.00 0.00 3.71
2822 5224 7.279758 GCAACTTTAGTCTTCAGATCAGCTAAT 59.720 37.037 0.00 0.00 0.00 1.73
2842 5245 0.179108 GCGAGGTATCTCCGCAACTT 60.179 55.000 12.87 0.00 41.99 2.66
2901 5304 4.096382 GCCTTTTCTGCCTCATTAAATCGA 59.904 41.667 0.00 0.00 0.00 3.59
2941 5344 1.628340 TCACAAGTCATGTACCCCTGG 59.372 52.381 0.00 0.00 41.46 4.45
3027 5553 5.039645 TCTTTCAAGGATGGAGGGAGTAAT 58.960 41.667 0.00 0.00 0.00 1.89
3028 5554 4.435137 TCTTTCAAGGATGGAGGGAGTAA 58.565 43.478 0.00 0.00 0.00 2.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.