Multiple sequence alignment - TraesCS2D01G539900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G539900 chr2D 100.000 2636 0 0 1 2636 620004769 620007404 0.000000e+00 4868.0
1 TraesCS2D01G539900 chr2D 85.430 151 19 1 1386 1533 620160294 620160444 1.260000e-33 154.0
2 TraesCS2D01G539900 chr2D 100.000 33 0 0 2330 2362 73001080 73001048 7.880000e-06 62.1
3 TraesCS2D01G539900 chrUn 90.716 991 46 14 1589 2548 23171731 23170756 0.000000e+00 1279.0
4 TraesCS2D01G539900 chrUn 85.670 1277 95 49 350 1589 23173130 23171905 0.000000e+00 1264.0
5 TraesCS2D01G539900 chrUn 85.446 1278 96 51 350 1589 350648626 350649851 0.000000e+00 1247.0
6 TraesCS2D01G539900 chrUn 84.198 424 46 15 1131 1544 23306987 23307399 2.460000e-105 392.0
7 TraesCS2D01G539900 chrUn 91.346 104 6 3 266 366 23120491 23120388 3.540000e-29 139.0
8 TraesCS2D01G539900 chrUn 91.346 104 6 3 266 366 23128985 23128882 3.540000e-29 139.0
9 TraesCS2D01G539900 chrUn 91.346 104 6 2 266 366 23130033 23129930 3.540000e-29 139.0
10 TraesCS2D01G539900 chrUn 91.346 104 6 2 266 366 23131081 23130978 3.540000e-29 139.0
11 TraesCS2D01G539900 chrUn 91.346 104 6 3 266 366 23184105 23184002 3.540000e-29 139.0
12 TraesCS2D01G539900 chrUn 91.346 104 6 2 266 366 23343146 23343249 3.540000e-29 139.0
13 TraesCS2D01G539900 chrUn 91.346 104 6 2 266 366 23344194 23344297 3.540000e-29 139.0
14 TraesCS2D01G539900 chrUn 91.346 104 6 3 266 366 23345241 23345344 3.540000e-29 139.0
15 TraesCS2D01G539900 chrUn 73.770 549 51 43 532 1063 23306481 23306953 2.130000e-26 130.0
16 TraesCS2D01G539900 chrUn 90.541 74 4 1 1589 1659 350650025 350650098 7.770000e-16 95.3
17 TraesCS2D01G539900 chr2B 91.594 916 44 12 1651 2548 759650729 759651629 0.000000e+00 1234.0
18 TraesCS2D01G539900 chr2B 93.015 272 14 5 974 1244 759735335 759735602 2.460000e-105 392.0
19 TraesCS2D01G539900 chr2B 91.209 182 16 0 1355 1536 759735648 759735829 5.630000e-62 248.0
20 TraesCS2D01G539900 chr2B 81.298 262 23 15 916 1174 758577395 758577633 3.460000e-44 189.0
21 TraesCS2D01G539900 chr2B 91.346 104 6 3 266 366 759647468 759647571 3.540000e-29 139.0
22 TraesCS2D01G539900 chr2A 83.613 714 50 32 911 1582 751539645 751540333 2.240000e-170 608.0
23 TraesCS2D01G539900 chr2A 78.632 702 84 32 861 1527 750985911 750986581 3.160000e-109 405.0
24 TraesCS2D01G539900 chr2A 77.318 507 60 33 1039 1536 751526355 751526815 5.630000e-62 248.0
25 TraesCS2D01G539900 chr2A 89.630 135 7 2 1589 1716 751540561 751540695 5.840000e-37 165.0
26 TraesCS2D01G539900 chr2A 86.667 150 17 1 1382 1528 751553112 751553261 2.100000e-36 163.0
27 TraesCS2D01G539900 chr7D 97.701 87 2 0 2550 2636 362362656 362362742 1.630000e-32 150.0
28 TraesCS2D01G539900 chr7D 94.545 55 3 0 2553 2607 395975775 395975721 4.670000e-13 86.1
29 TraesCS2D01G539900 chr1B 97.674 86 2 0 2549 2634 456188573 456188658 5.880000e-32 148.0
30 TraesCS2D01G539900 chr6B 95.506 89 3 1 2549 2636 55674484 55674396 9.840000e-30 141.0
31 TraesCS2D01G539900 chr1D 80.769 130 23 2 2325 2453 401659632 401659504 1.670000e-17 100.0
32 TraesCS2D01G539900 chr4A 81.301 123 22 1 2313 2435 625382116 625382237 6.000000e-17 99.0
33 TraesCS2D01G539900 chr3D 87.059 85 10 1 2316 2400 590219705 590219622 7.770000e-16 95.3
34 TraesCS2D01G539900 chr5B 80.833 120 21 2 2316 2435 543818738 543818855 2.790000e-15 93.5
35 TraesCS2D01G539900 chr5B 95.833 48 2 0 2547 2594 596933167 596933120 7.820000e-11 78.7
36 TraesCS2D01G539900 chr3B 82.418 91 16 0 2344 2434 573644332 573644242 2.170000e-11 80.5
37 TraesCS2D01G539900 chr3B 97.143 35 1 0 2330 2364 446748085 446748051 2.830000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G539900 chr2D 620004769 620007404 2635 False 4868.00 4868 100.0000 1 2636 1 chr2D.!!$F1 2635
1 TraesCS2D01G539900 chrUn 23170756 23173130 2374 True 1271.50 1279 88.1930 350 2548 2 chrUn.!!$R4 2198
2 TraesCS2D01G539900 chrUn 350648626 350650098 1472 False 671.15 1247 87.9935 350 1659 2 chrUn.!!$F3 1309
3 TraesCS2D01G539900 chrUn 23306481 23307399 918 False 261.00 392 78.9840 532 1544 2 chrUn.!!$F1 1012
4 TraesCS2D01G539900 chr2B 759647468 759651629 4161 False 686.50 1234 91.4700 266 2548 2 chr2B.!!$F2 2282
5 TraesCS2D01G539900 chr2A 750985911 750986581 670 False 405.00 405 78.6320 861 1527 1 chr2A.!!$F1 666
6 TraesCS2D01G539900 chr2A 751539645 751540695 1050 False 386.50 608 86.6215 911 1716 2 chr2A.!!$F4 805

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
230 231 0.096454 CTCGTGTACGCTGATCGACA 59.904 55.0 4.67 0.00 41.67 4.35 F
236 237 0.096454 TACGCTGATCGACACGAGTG 59.904 55.0 1.13 1.13 39.91 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1233 3943 0.105039 CGGATTCGGAGAAGAAGGGG 59.895 60.0 0.0 0.0 45.9 4.79 R
1850 4827 0.107703 GATGGACGGAGCATGTTGGA 60.108 55.0 0.0 0.0 0.0 3.53 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 0.374758 CACTGCCGATCCAAATGACG 59.625 55.000 0.00 0.00 0.00 4.35
20 21 0.744414 ACTGCCGATCCAAATGACGG 60.744 55.000 0.00 0.00 46.74 4.79
21 22 0.461870 CTGCCGATCCAAATGACGGA 60.462 55.000 0.00 0.00 46.94 4.69
22 23 0.742990 TGCCGATCCAAATGACGGAC 60.743 55.000 0.00 0.00 46.94 4.79
23 24 1.762222 GCCGATCCAAATGACGGACG 61.762 60.000 0.00 0.00 46.94 4.79
24 25 1.636340 CGATCCAAATGACGGACGC 59.364 57.895 0.00 0.00 34.69 5.19
25 26 1.762222 CGATCCAAATGACGGACGCC 61.762 60.000 0.00 0.00 34.69 5.68
36 37 2.202401 GGACGCCGAGTGTACGAC 60.202 66.667 0.00 0.00 35.09 4.34
37 38 2.202401 GACGCCGAGTGTACGACC 60.202 66.667 0.00 0.00 35.09 4.79
38 39 3.989566 GACGCCGAGTGTACGACCG 62.990 68.421 0.00 0.00 35.40 4.79
39 40 3.792047 CGCCGAGTGTACGACCGA 61.792 66.667 0.00 0.00 35.09 4.69
40 41 2.796651 GCCGAGTGTACGACCGAT 59.203 61.111 0.00 0.00 35.09 4.18
41 42 1.298190 GCCGAGTGTACGACCGATC 60.298 63.158 0.00 0.00 35.09 3.69
42 43 1.354506 CCGAGTGTACGACCGATCC 59.645 63.158 0.00 0.00 35.09 3.36
43 44 1.011463 CGAGTGTACGACCGATCCG 60.011 63.158 0.00 0.00 35.09 4.18
58 59 3.053662 TCCGGACGGATAAAAAGCG 57.946 52.632 9.76 0.00 39.76 4.68
59 60 0.460635 TCCGGACGGATAAAAAGCGG 60.461 55.000 9.76 0.00 39.76 5.52
60 61 0.460635 CCGGACGGATAAAAAGCGGA 60.461 55.000 4.40 0.00 37.50 5.54
61 62 0.648958 CGGACGGATAAAAAGCGGAC 59.351 55.000 0.00 0.00 0.00 4.79
62 63 1.729284 GGACGGATAAAAAGCGGACA 58.271 50.000 0.00 0.00 0.00 4.02
63 64 2.285977 GGACGGATAAAAAGCGGACAT 58.714 47.619 0.00 0.00 0.00 3.06
64 65 3.460103 GGACGGATAAAAAGCGGACATA 58.540 45.455 0.00 0.00 0.00 2.29
65 66 3.872771 GGACGGATAAAAAGCGGACATAA 59.127 43.478 0.00 0.00 0.00 1.90
66 67 4.514066 GGACGGATAAAAAGCGGACATAAT 59.486 41.667 0.00 0.00 0.00 1.28
67 68 5.333875 GGACGGATAAAAAGCGGACATAATC 60.334 44.000 0.00 0.00 0.00 1.75
68 69 4.210537 ACGGATAAAAAGCGGACATAATCG 59.789 41.667 0.00 0.00 0.00 3.34
74 75 2.616969 GCGGACATAATCGCCATGT 58.383 52.632 0.00 0.00 45.42 3.21
75 76 0.944386 GCGGACATAATCGCCATGTT 59.056 50.000 0.00 0.00 45.42 2.71
76 77 1.333619 GCGGACATAATCGCCATGTTT 59.666 47.619 0.00 0.00 45.42 2.83
77 78 2.854424 GCGGACATAATCGCCATGTTTG 60.854 50.000 0.00 0.00 45.42 2.93
78 79 2.286950 CGGACATAATCGCCATGTTTGG 60.287 50.000 0.00 0.00 46.66 3.28
79 80 2.034558 GGACATAATCGCCATGTTTGGG 59.965 50.000 0.00 0.00 43.84 4.12
80 81 2.687935 GACATAATCGCCATGTTTGGGT 59.312 45.455 0.00 0.00 43.84 4.51
81 82 3.880490 GACATAATCGCCATGTTTGGGTA 59.120 43.478 0.00 0.00 43.84 3.69
82 83 3.882888 ACATAATCGCCATGTTTGGGTAG 59.117 43.478 0.00 0.00 43.84 3.18
83 84 1.762708 AATCGCCATGTTTGGGTAGG 58.237 50.000 0.00 0.00 43.84 3.18
84 85 0.623723 ATCGCCATGTTTGGGTAGGT 59.376 50.000 0.00 0.00 43.84 3.08
85 86 0.402504 TCGCCATGTTTGGGTAGGTT 59.597 50.000 0.00 0.00 43.84 3.50
86 87 0.808755 CGCCATGTTTGGGTAGGTTC 59.191 55.000 0.00 0.00 43.84 3.62
87 88 0.808755 GCCATGTTTGGGTAGGTTCG 59.191 55.000 0.00 0.00 43.84 3.95
88 89 1.884928 GCCATGTTTGGGTAGGTTCGT 60.885 52.381 0.00 0.00 43.84 3.85
89 90 2.510613 CCATGTTTGGGTAGGTTCGTT 58.489 47.619 0.00 0.00 39.56 3.85
90 91 2.227865 CCATGTTTGGGTAGGTTCGTTG 59.772 50.000 0.00 0.00 39.56 4.10
91 92 1.970092 TGTTTGGGTAGGTTCGTTGG 58.030 50.000 0.00 0.00 0.00 3.77
92 93 1.489649 TGTTTGGGTAGGTTCGTTGGA 59.510 47.619 0.00 0.00 0.00 3.53
93 94 2.148768 GTTTGGGTAGGTTCGTTGGAG 58.851 52.381 0.00 0.00 0.00 3.86
94 95 1.426751 TTGGGTAGGTTCGTTGGAGT 58.573 50.000 0.00 0.00 0.00 3.85
95 96 1.426751 TGGGTAGGTTCGTTGGAGTT 58.573 50.000 0.00 0.00 0.00 3.01
96 97 1.071071 TGGGTAGGTTCGTTGGAGTTG 59.929 52.381 0.00 0.00 0.00 3.16
97 98 1.154197 GGTAGGTTCGTTGGAGTTGC 58.846 55.000 0.00 0.00 0.00 4.17
98 99 1.270678 GGTAGGTTCGTTGGAGTTGCT 60.271 52.381 0.00 0.00 0.00 3.91
99 100 2.067013 GTAGGTTCGTTGGAGTTGCTC 58.933 52.381 0.00 0.00 0.00 4.26
100 101 0.759346 AGGTTCGTTGGAGTTGCTCT 59.241 50.000 0.00 0.00 0.00 4.09
101 102 1.968493 AGGTTCGTTGGAGTTGCTCTA 59.032 47.619 0.00 0.00 0.00 2.43
102 103 2.367567 AGGTTCGTTGGAGTTGCTCTAA 59.632 45.455 0.00 0.00 0.00 2.10
103 104 3.008049 AGGTTCGTTGGAGTTGCTCTAAT 59.992 43.478 0.00 0.00 33.81 1.73
104 105 3.125316 GGTTCGTTGGAGTTGCTCTAATG 59.875 47.826 7.77 7.77 38.67 1.90
105 106 2.346803 TCGTTGGAGTTGCTCTAATGC 58.653 47.619 8.85 0.00 37.71 3.56
106 107 1.061131 CGTTGGAGTTGCTCTAATGCG 59.939 52.381 2.41 0.00 33.81 4.73
107 108 1.398390 GTTGGAGTTGCTCTAATGCGG 59.602 52.381 0.00 0.00 33.81 5.69
108 109 0.901827 TGGAGTTGCTCTAATGCGGA 59.098 50.000 0.00 0.00 35.36 5.54
109 110 1.134699 TGGAGTTGCTCTAATGCGGAG 60.135 52.381 0.00 0.00 35.36 4.63
110 111 1.576356 GAGTTGCTCTAATGCGGAGG 58.424 55.000 0.00 0.00 35.36 4.30
111 112 0.179000 AGTTGCTCTAATGCGGAGGG 59.821 55.000 0.00 0.00 35.36 4.30
112 113 0.107654 GTTGCTCTAATGCGGAGGGT 60.108 55.000 0.00 0.00 35.36 4.34
113 114 0.107703 TTGCTCTAATGCGGAGGGTG 60.108 55.000 0.00 0.00 35.36 4.61
114 115 0.975556 TGCTCTAATGCGGAGGGTGA 60.976 55.000 0.00 0.00 35.36 4.02
115 116 0.394565 GCTCTAATGCGGAGGGTGAT 59.605 55.000 0.00 0.00 0.00 3.06
116 117 1.618837 GCTCTAATGCGGAGGGTGATA 59.381 52.381 0.00 0.00 0.00 2.15
117 118 2.234908 GCTCTAATGCGGAGGGTGATAT 59.765 50.000 0.00 0.00 0.00 1.63
118 119 3.677424 GCTCTAATGCGGAGGGTGATATC 60.677 52.174 0.00 0.00 0.00 1.63
119 120 3.506398 TCTAATGCGGAGGGTGATATCA 58.494 45.455 0.00 0.00 0.00 2.15
120 121 4.096681 TCTAATGCGGAGGGTGATATCAT 58.903 43.478 9.02 0.00 0.00 2.45
121 122 5.269189 TCTAATGCGGAGGGTGATATCATA 58.731 41.667 9.02 0.00 0.00 2.15
122 123 4.478206 AATGCGGAGGGTGATATCATAG 57.522 45.455 9.02 0.00 0.00 2.23
123 124 1.550524 TGCGGAGGGTGATATCATAGC 59.449 52.381 9.02 8.91 0.00 2.97
124 125 1.134670 GCGGAGGGTGATATCATAGCC 60.135 57.143 9.02 5.94 34.73 3.93
125 126 1.135139 CGGAGGGTGATATCATAGCCG 59.865 57.143 18.28 18.28 39.38 5.52
126 127 1.482593 GGAGGGTGATATCATAGCCGG 59.517 57.143 9.02 0.00 39.38 6.13
127 128 2.180276 GAGGGTGATATCATAGCCGGT 58.820 52.381 9.02 0.00 39.38 5.28
128 129 2.567615 GAGGGTGATATCATAGCCGGTT 59.432 50.000 9.02 0.00 39.38 4.44
129 130 3.767673 GAGGGTGATATCATAGCCGGTTA 59.232 47.826 9.02 0.17 39.38 2.85
130 131 4.164981 AGGGTGATATCATAGCCGGTTAA 58.835 43.478 9.02 0.00 39.38 2.01
131 132 4.595781 AGGGTGATATCATAGCCGGTTAAA 59.404 41.667 9.02 0.00 39.38 1.52
132 133 4.694037 GGGTGATATCATAGCCGGTTAAAC 59.306 45.833 9.02 0.00 0.00 2.01
133 134 4.694037 GGTGATATCATAGCCGGTTAAACC 59.306 45.833 9.02 0.00 34.05 3.27
134 135 5.302360 GTGATATCATAGCCGGTTAAACCA 58.698 41.667 9.02 0.00 38.47 3.67
135 136 5.761234 GTGATATCATAGCCGGTTAAACCAA 59.239 40.000 9.02 0.00 38.47 3.67
136 137 5.995282 TGATATCATAGCCGGTTAAACCAAG 59.005 40.000 0.79 0.00 38.47 3.61
137 138 3.985019 TCATAGCCGGTTAAACCAAGA 57.015 42.857 0.79 0.00 38.47 3.02
138 139 4.497291 TCATAGCCGGTTAAACCAAGAT 57.503 40.909 0.79 0.00 38.47 2.40
139 140 4.850680 TCATAGCCGGTTAAACCAAGATT 58.149 39.130 0.79 0.00 38.47 2.40
140 141 5.991861 TCATAGCCGGTTAAACCAAGATTA 58.008 37.500 0.79 0.00 38.47 1.75
141 142 6.416415 TCATAGCCGGTTAAACCAAGATTAA 58.584 36.000 0.79 0.00 38.47 1.40
142 143 7.057894 TCATAGCCGGTTAAACCAAGATTAAT 58.942 34.615 0.79 0.00 38.47 1.40
143 144 7.558444 TCATAGCCGGTTAAACCAAGATTAATT 59.442 33.333 0.79 0.00 38.47 1.40
144 145 5.961272 AGCCGGTTAAACCAAGATTAATTG 58.039 37.500 1.90 0.00 38.47 2.32
145 146 4.565166 GCCGGTTAAACCAAGATTAATTGC 59.435 41.667 1.90 0.00 38.47 3.56
146 147 5.715070 CCGGTTAAACCAAGATTAATTGCA 58.285 37.500 0.00 0.00 38.47 4.08
147 148 5.804979 CCGGTTAAACCAAGATTAATTGCAG 59.195 40.000 0.00 0.00 38.47 4.41
148 149 5.288472 CGGTTAAACCAAGATTAATTGCAGC 59.712 40.000 0.00 0.00 38.47 5.25
149 150 5.288472 GGTTAAACCAAGATTAATTGCAGCG 59.712 40.000 0.00 0.00 38.42 5.18
150 151 3.508744 AACCAAGATTAATTGCAGCGG 57.491 42.857 0.00 0.00 0.00 5.52
151 152 2.446435 ACCAAGATTAATTGCAGCGGT 58.554 42.857 0.00 0.00 0.00 5.68
152 153 2.825532 ACCAAGATTAATTGCAGCGGTT 59.174 40.909 0.00 0.00 0.00 4.44
153 154 3.181397 CCAAGATTAATTGCAGCGGTTG 58.819 45.455 0.00 0.00 0.00 3.77
154 155 3.181397 CAAGATTAATTGCAGCGGTTGG 58.819 45.455 0.00 0.00 0.00 3.77
155 156 2.722094 AGATTAATTGCAGCGGTTGGA 58.278 42.857 0.00 0.00 0.00 3.53
156 157 3.290710 AGATTAATTGCAGCGGTTGGAT 58.709 40.909 0.00 0.00 0.00 3.41
157 158 2.937469 TTAATTGCAGCGGTTGGATG 57.063 45.000 0.00 0.00 34.39 3.51
158 159 1.102154 TAATTGCAGCGGTTGGATGG 58.898 50.000 0.00 0.00 31.06 3.51
159 160 0.899717 AATTGCAGCGGTTGGATGGT 60.900 50.000 0.00 0.00 31.06 3.55
160 161 1.597797 ATTGCAGCGGTTGGATGGTG 61.598 55.000 0.00 0.00 36.70 4.17
161 162 2.672996 GCAGCGGTTGGATGGTGT 60.673 61.111 0.00 0.00 36.05 4.16
162 163 2.268076 GCAGCGGTTGGATGGTGTT 61.268 57.895 0.00 0.00 36.05 3.32
163 164 1.875963 CAGCGGTTGGATGGTGTTC 59.124 57.895 0.00 0.00 0.00 3.18
164 165 0.888736 CAGCGGTTGGATGGTGTTCA 60.889 55.000 0.00 0.00 0.00 3.18
165 166 0.889186 AGCGGTTGGATGGTGTTCAC 60.889 55.000 0.00 0.00 0.00 3.18
166 167 1.862602 GCGGTTGGATGGTGTTCACC 61.863 60.000 14.31 14.31 0.00 4.02
167 168 1.573829 CGGTTGGATGGTGTTCACCG 61.574 60.000 15.82 0.00 0.00 4.94
168 169 0.250553 GGTTGGATGGTGTTCACCGA 60.251 55.000 15.82 6.95 0.00 4.69
169 170 1.613255 GGTTGGATGGTGTTCACCGAT 60.613 52.381 15.82 10.80 0.00 4.18
170 171 1.737793 GTTGGATGGTGTTCACCGATC 59.262 52.381 15.82 16.89 0.00 3.69
171 172 1.275666 TGGATGGTGTTCACCGATCT 58.724 50.000 21.41 8.89 0.00 2.75
172 173 1.207089 TGGATGGTGTTCACCGATCTC 59.793 52.381 21.41 14.32 0.00 2.75
173 174 1.473434 GGATGGTGTTCACCGATCTCC 60.473 57.143 21.41 17.53 0.00 3.71
174 175 0.175760 ATGGTGTTCACCGATCTCCG 59.824 55.000 15.82 0.00 38.18 4.63
175 176 1.183030 TGGTGTTCACCGATCTCCGT 61.183 55.000 15.82 0.00 36.31 4.69
176 177 0.736325 GGTGTTCACCGATCTCCGTG 60.736 60.000 6.22 0.00 36.31 4.94
177 178 1.080093 TGTTCACCGATCTCCGTGC 60.080 57.895 0.00 0.00 36.31 5.34
178 179 2.158959 GTTCACCGATCTCCGTGCG 61.159 63.158 0.00 0.00 36.31 5.34
179 180 2.632544 TTCACCGATCTCCGTGCGT 61.633 57.895 0.00 0.00 36.31 5.24
180 181 2.812542 TTCACCGATCTCCGTGCGTG 62.813 60.000 0.00 0.00 36.31 5.34
181 182 4.129737 ACCGATCTCCGTGCGTGG 62.130 66.667 0.00 0.00 36.31 4.94
183 184 4.794439 CGATCTCCGTGCGTGGCA 62.794 66.667 0.00 0.00 35.60 4.92
184 185 2.202932 GATCTCCGTGCGTGGCAT 60.203 61.111 0.00 0.00 41.91 4.40
185 186 2.202932 ATCTCCGTGCGTGGCATC 60.203 61.111 0.00 0.00 41.91 3.91
186 187 3.740128 ATCTCCGTGCGTGGCATCC 62.740 63.158 0.00 0.00 41.91 3.51
211 212 4.902645 GCATAGCCAGGCCCCACC 62.903 72.222 8.22 0.00 39.61 4.61
220 221 4.446413 GGCCCCACCTCGTGTACG 62.446 72.222 0.00 0.00 41.45 3.67
222 223 3.379445 CCCCACCTCGTGTACGCT 61.379 66.667 4.67 0.00 39.60 5.07
223 224 2.126071 CCCACCTCGTGTACGCTG 60.126 66.667 4.67 0.00 39.60 5.18
224 225 2.632544 CCCACCTCGTGTACGCTGA 61.633 63.158 4.67 3.12 39.60 4.26
225 226 1.511305 CCACCTCGTGTACGCTGAT 59.489 57.895 4.67 0.00 39.60 2.90
226 227 0.525668 CCACCTCGTGTACGCTGATC 60.526 60.000 4.67 0.00 39.60 2.92
227 228 0.861866 CACCTCGTGTACGCTGATCG 60.862 60.000 4.67 0.75 45.38 3.69
228 229 1.022982 ACCTCGTGTACGCTGATCGA 61.023 55.000 4.67 0.00 41.67 3.59
229 230 0.589229 CCTCGTGTACGCTGATCGAC 60.589 60.000 4.67 0.00 41.67 4.20
230 231 0.096454 CTCGTGTACGCTGATCGACA 59.904 55.000 4.67 0.00 41.67 4.35
231 232 0.179207 TCGTGTACGCTGATCGACAC 60.179 55.000 4.67 0.00 41.40 3.67
232 233 2.266373 GTGTACGCTGATCGACACG 58.734 57.895 0.00 0.00 41.67 4.49
233 234 0.179207 GTGTACGCTGATCGACACGA 60.179 55.000 0.00 0.00 41.67 4.35
234 235 0.096454 TGTACGCTGATCGACACGAG 59.904 55.000 5.38 0.00 39.91 4.18
235 236 0.096628 GTACGCTGATCGACACGAGT 59.903 55.000 5.38 0.00 39.91 4.18
236 237 0.096454 TACGCTGATCGACACGAGTG 59.904 55.000 1.13 1.13 39.91 3.51
237 238 2.500442 CGCTGATCGACACGAGTGC 61.500 63.158 2.76 0.00 39.91 4.40
238 239 1.153939 GCTGATCGACACGAGTGCT 60.154 57.895 2.76 0.00 39.91 4.40
239 240 1.136872 GCTGATCGACACGAGTGCTC 61.137 60.000 2.76 0.25 39.91 4.26
257 258 2.533318 CGCAGAGGAAAAGCGTTCT 58.467 52.632 0.00 0.00 45.82 3.01
258 259 0.164647 CGCAGAGGAAAAGCGTTCTG 59.835 55.000 0.00 0.00 45.82 3.02
259 260 1.512926 GCAGAGGAAAAGCGTTCTGA 58.487 50.000 3.62 0.00 0.00 3.27
260 261 1.195674 GCAGAGGAAAAGCGTTCTGAC 59.804 52.381 3.62 0.00 0.00 3.51
261 262 1.801178 CAGAGGAAAAGCGTTCTGACC 59.199 52.381 3.62 0.00 0.00 4.02
262 263 0.790814 GAGGAAAAGCGTTCTGACCG 59.209 55.000 3.62 0.00 0.00 4.79
329 330 0.605319 TTGCTTGGAACCACCGCTAG 60.605 55.000 12.97 0.00 42.61 3.42
330 331 1.295423 GCTTGGAACCACCGCTAGA 59.705 57.895 0.00 0.00 42.61 2.43
334 335 1.153881 GGAACCACCGCTAGACGTC 60.154 63.158 7.70 7.70 41.42 4.34
344 345 1.371595 GCTAGACGTCCGAACTCTCT 58.628 55.000 13.01 0.00 0.00 3.10
348 349 3.285816 AGACGTCCGAACTCTCTTTTC 57.714 47.619 13.01 0.00 0.00 2.29
369 2945 1.212688 TCCTGGCAATGGTAGGTGATG 59.787 52.381 0.00 0.00 33.30 3.07
370 2946 1.212688 CCTGGCAATGGTAGGTGATGA 59.787 52.381 0.00 0.00 0.00 2.92
371 2947 2.158564 CCTGGCAATGGTAGGTGATGAT 60.159 50.000 0.00 0.00 0.00 2.45
372 2948 2.882761 CTGGCAATGGTAGGTGATGATG 59.117 50.000 0.00 0.00 0.00 3.07
394 2970 4.329545 GTTGGTCCGCTGGGCTGA 62.330 66.667 0.00 0.00 0.00 4.26
412 2988 2.202557 GGTGCCGCGCCAATTAAC 60.203 61.111 18.36 0.00 33.65 2.01
423 2999 1.405391 GCCAATTAACCATTTGCCGCT 60.405 47.619 0.00 0.00 28.89 5.52
432 3008 3.680620 ATTTGCCGCTGCCGCTAGA 62.681 57.895 13.74 1.15 36.33 2.43
452 3028 4.588899 AGATGCACTTGTGCCATAACTTA 58.411 39.130 21.01 2.36 0.00 2.24
461 3037 1.089112 GCCATAACTTAACGGCCGTT 58.911 50.000 41.91 41.91 38.67 4.44
508 3085 0.599558 CAACTACGGACAAGGGACGA 59.400 55.000 0.00 0.00 0.00 4.20
509 3086 0.600057 AACTACGGACAAGGGACGAC 59.400 55.000 0.00 0.00 0.00 4.34
510 3087 1.136147 CTACGGACAAGGGACGACG 59.864 63.158 0.00 0.00 0.00 5.12
511 3088 1.580845 CTACGGACAAGGGACGACGT 61.581 60.000 0.00 0.00 38.23 4.34
512 3089 0.321210 TACGGACAAGGGACGACGTA 60.321 55.000 0.00 0.00 35.97 3.57
513 3090 1.154150 CGGACAAGGGACGACGTAC 60.154 63.158 0.10 0.10 0.00 3.67
515 3092 1.799121 GACAAGGGACGACGTACGC 60.799 63.158 16.72 7.41 46.94 4.42
555 3132 2.313172 CGACAGCGCTGACAGCTTT 61.313 57.895 42.03 19.53 44.06 3.51
581 3158 1.143183 GCCAGATCGGTCGGCTTAA 59.857 57.895 19.84 0.00 39.41 1.85
602 3181 0.108186 TAGCTCACGATGCCCAAGTG 60.108 55.000 0.00 2.23 37.24 3.16
615 3194 3.003480 GCCCAAGTGTGTCAAGATACTC 58.997 50.000 0.00 0.00 0.00 2.59
616 3195 3.254060 CCCAAGTGTGTCAAGATACTCG 58.746 50.000 0.00 0.00 0.00 4.18
617 3196 2.668457 CCAAGTGTGTCAAGATACTCGC 59.332 50.000 0.00 0.00 0.00 5.03
618 3197 2.656560 AGTGTGTCAAGATACTCGCC 57.343 50.000 0.00 0.00 0.00 5.54
619 3198 1.893137 AGTGTGTCAAGATACTCGCCA 59.107 47.619 0.00 0.00 0.00 5.69
620 3199 2.299013 AGTGTGTCAAGATACTCGCCAA 59.701 45.455 0.00 0.00 0.00 4.52
621 3200 2.668457 GTGTGTCAAGATACTCGCCAAG 59.332 50.000 0.00 0.00 0.00 3.61
623 3202 3.508402 TGTGTCAAGATACTCGCCAAGTA 59.492 43.478 0.00 0.00 44.49 2.24
630 3209 3.717707 GATACTCGCCAAGTAGCAATCA 58.282 45.455 4.72 0.00 44.59 2.57
631 3210 2.698855 ACTCGCCAAGTAGCAATCAT 57.301 45.000 0.00 0.00 36.07 2.45
633 3212 1.600957 CTCGCCAAGTAGCAATCATGG 59.399 52.381 0.00 0.00 0.00 3.66
634 3213 1.209261 TCGCCAAGTAGCAATCATGGA 59.791 47.619 0.00 0.00 32.82 3.41
635 3214 2.158769 TCGCCAAGTAGCAATCATGGAT 60.159 45.455 0.00 0.00 32.82 3.41
640 3219 4.153655 CCAAGTAGCAATCATGGATCGATG 59.846 45.833 11.21 11.21 32.82 3.84
645 3224 2.774687 CAATCATGGATCGATGGAGCA 58.225 47.619 16.58 0.00 0.00 4.26
674 3253 4.988716 ACCCGCACCGAGACTCCA 62.989 66.667 0.00 0.00 0.00 3.86
678 3257 2.433318 GCACCGAGACTCCAGCAC 60.433 66.667 0.00 0.00 0.00 4.40
679 3258 3.051210 CACCGAGACTCCAGCACA 58.949 61.111 0.00 0.00 0.00 4.57
680 3259 1.080230 CACCGAGACTCCAGCACAG 60.080 63.158 0.00 0.00 0.00 3.66
681 3260 2.279069 ACCGAGACTCCAGCACAGG 61.279 63.158 0.00 0.00 0.00 4.00
682 3261 1.979155 CCGAGACTCCAGCACAGGA 60.979 63.158 0.00 0.00 36.00 3.86
683 3262 1.214062 CGAGACTCCAGCACAGGAC 59.786 63.158 0.00 0.00 33.19 3.85
684 3263 1.214062 GAGACTCCAGCACAGGACG 59.786 63.158 0.00 0.00 33.19 4.79
685 3264 1.528292 GAGACTCCAGCACAGGACGT 61.528 60.000 0.00 0.00 33.19 4.34
706 3285 3.186047 CGGTCGTCGTGGCCATTC 61.186 66.667 9.72 1.21 0.00 2.67
707 3286 2.047655 GGTCGTCGTGGCCATTCA 60.048 61.111 9.72 0.00 0.00 2.57
708 3287 1.449601 GGTCGTCGTGGCCATTCAT 60.450 57.895 9.72 0.00 0.00 2.57
709 3288 1.024579 GGTCGTCGTGGCCATTCATT 61.025 55.000 9.72 0.00 0.00 2.57
713 3292 0.394352 GTCGTGGCCATTCATTCCCT 60.394 55.000 9.72 0.00 0.00 4.20
753 3332 2.283388 TACAACGCCCCTCGGTCT 60.283 61.111 0.00 0.00 43.86 3.85
754 3333 2.345760 TACAACGCCCCTCGGTCTC 61.346 63.158 0.00 0.00 43.86 3.36
769 3349 1.484240 GGTCTCCTCCACTCTCCAATG 59.516 57.143 0.00 0.00 0.00 2.82
783 3363 2.360350 AATGGCGCTCACACCTGG 60.360 61.111 7.64 0.00 0.00 4.45
788 3368 4.624364 CGCTCACACCTGGCCACA 62.624 66.667 0.00 0.00 0.00 4.17
790 3370 2.666190 CTCACACCTGGCCACACG 60.666 66.667 0.00 0.00 0.00 4.49
828 3430 0.968901 TACGCCCTAGTCCCACTGTG 60.969 60.000 0.00 0.00 0.00 3.66
843 3445 1.331214 CTGTGCCAACTCCCAACAAT 58.669 50.000 0.00 0.00 0.00 2.71
853 3455 2.618053 CTCCCAACAATACACGGAGTC 58.382 52.381 0.00 0.00 41.61 3.36
855 3457 2.569853 TCCCAACAATACACGGAGTCAT 59.430 45.455 0.00 0.00 41.61 3.06
856 3458 2.677836 CCCAACAATACACGGAGTCATG 59.322 50.000 0.00 0.00 41.61 3.07
857 3459 2.677836 CCAACAATACACGGAGTCATGG 59.322 50.000 0.00 0.00 41.61 3.66
858 3460 3.334691 CAACAATACACGGAGTCATGGT 58.665 45.455 0.00 0.00 41.61 3.55
900 3502 2.348472 CTATAAATCCCCCAGGCTCCA 58.652 52.381 0.00 0.00 0.00 3.86
906 3508 2.750657 CCCCCAGGCTCCATCACTC 61.751 68.421 0.00 0.00 0.00 3.51
913 3549 1.439228 GCTCCATCACTCGCTGCTA 59.561 57.895 0.00 0.00 0.00 3.49
987 3626 3.089284 ACCCTTCCAAATTCATTCGTCC 58.911 45.455 0.00 0.00 0.00 4.79
1090 3764 2.818132 GCGCCTAGCTCCTGATGT 59.182 61.111 0.00 0.00 44.04 3.06
1091 3765 1.796190 CGCGCCTAGCTCCTGATGTA 61.796 60.000 0.00 0.00 45.59 2.29
1092 3766 0.319125 GCGCCTAGCTCCTGATGTAC 60.319 60.000 0.00 0.00 44.04 2.90
1093 3767 0.315568 CGCCTAGCTCCTGATGTACC 59.684 60.000 0.00 0.00 0.00 3.34
1120 3794 6.153000 ACTGGTAGTTAGTTTGATCTGATCGT 59.847 38.462 12.65 0.90 0.00 3.73
1228 3938 2.029828 CGCTCTCTGTGGTGACTTACTT 60.030 50.000 0.00 0.00 0.00 2.24
1229 3939 3.553096 CGCTCTCTGTGGTGACTTACTTT 60.553 47.826 0.00 0.00 0.00 2.66
1230 3940 4.321008 CGCTCTCTGTGGTGACTTACTTTA 60.321 45.833 0.00 0.00 0.00 1.85
1233 3943 6.328641 TCTCTGTGGTGACTTACTTTACTC 57.671 41.667 0.00 0.00 0.00 2.59
1234 3944 5.243283 TCTCTGTGGTGACTTACTTTACTCC 59.757 44.000 0.00 0.00 0.00 3.85
1235 3945 4.282703 TCTGTGGTGACTTACTTTACTCCC 59.717 45.833 0.00 0.00 0.00 4.30
1379 4112 2.657237 CGACCGTGGCTTCCTTCT 59.343 61.111 0.00 0.00 0.00 2.85
1380 4113 1.738099 CGACCGTGGCTTCCTTCTG 60.738 63.158 0.00 0.00 0.00 3.02
1419 4152 1.811266 CGCCGTGGACATGAAGGAG 60.811 63.158 0.00 0.00 0.00 3.69
1512 4245 2.989824 CAGGTGGTCTCCGTCGGT 60.990 66.667 11.88 0.00 0.00 4.69
1680 4657 2.287009 GGCCGTGTGAGCTAAATATTGC 60.287 50.000 0.00 0.00 0.00 3.56
1757 4734 5.708877 ACAGTGTGGAGAAGAACTACTAC 57.291 43.478 0.00 0.00 0.00 2.73
1758 4735 5.386924 ACAGTGTGGAGAAGAACTACTACT 58.613 41.667 0.00 0.00 31.39 2.57
1760 4737 4.767928 AGTGTGGAGAAGAACTACTACTGG 59.232 45.833 0.00 0.00 30.60 4.00
1761 4738 4.523558 GTGTGGAGAAGAACTACTACTGGT 59.476 45.833 0.00 0.00 0.00 4.00
1762 4739 5.709164 GTGTGGAGAAGAACTACTACTGGTA 59.291 44.000 0.00 0.00 0.00 3.25
1763 4740 6.208204 GTGTGGAGAAGAACTACTACTGGTAA 59.792 42.308 0.00 0.00 0.00 2.85
1794 4771 1.860676 GCTGCATGCATACATTTGGG 58.139 50.000 22.97 7.15 42.31 4.12
1795 4772 1.137479 GCTGCATGCATACATTTGGGT 59.863 47.619 22.97 0.00 42.31 4.51
1796 4773 2.419021 GCTGCATGCATACATTTGGGTT 60.419 45.455 22.97 0.00 42.31 4.11
1797 4774 3.864243 CTGCATGCATACATTTGGGTTT 58.136 40.909 22.97 0.00 32.87 3.27
1850 4827 1.274167 TCCTTTGTCCTTACGTGCGAT 59.726 47.619 0.00 0.00 0.00 4.58
1859 4836 0.724549 TTACGTGCGATCCAACATGC 59.275 50.000 0.00 0.00 0.00 4.06
2037 5020 4.468643 GTCAAATTTCGCACGTCCATTTA 58.531 39.130 0.00 0.00 0.00 1.40
2052 5035 5.235186 CGTCCATTTATGATCCAACTCTGTC 59.765 44.000 0.00 0.00 0.00 3.51
2075 5058 2.263021 GCATCTGTGTGGCACTGCA 61.263 57.895 19.83 15.90 35.11 4.41
2140 5123 2.737376 GTGCGTTCCGTCCCACTC 60.737 66.667 0.00 0.00 0.00 3.51
2144 5127 2.863346 CGTTCCGTCCCACTCCACA 61.863 63.158 0.00 0.00 0.00 4.17
2203 5186 4.593956 AGAATCTTCCATTGAAGTCCACC 58.406 43.478 6.45 0.00 46.66 4.61
2222 5205 0.890683 CAGATGACCCCCAAACAAGC 59.109 55.000 0.00 0.00 0.00 4.01
2263 5246 5.015733 GCTGTTTTCGATGACATAGAAACG 58.984 41.667 19.50 13.29 34.38 3.60
2266 5249 4.840401 TTTCGATGACATAGAAACGCAG 57.160 40.909 16.82 0.00 30.58 5.18
2312 5295 5.048013 ACACGCGAATCAGATGATTATCCTA 60.048 40.000 15.93 0.00 44.14 2.94
2314 5297 5.864474 ACGCGAATCAGATGATTATCCTAAC 59.136 40.000 15.93 0.00 44.14 2.34
2318 5301 6.309009 CGAATCAGATGATTATCCTAACGGTG 59.691 42.308 8.01 0.00 44.14 4.94
2402 5385 0.935366 GATGCTACGAGCGGCACTAC 60.935 60.000 1.45 0.00 46.26 2.73
2404 5387 0.745486 TGCTACGAGCGGCACTACTA 60.745 55.000 1.45 0.00 46.26 1.82
2409 5392 0.663688 CGAGCGGCACTACTAGATGT 59.336 55.000 1.45 0.00 0.00 3.06
2413 5396 1.852895 GCGGCACTACTAGATGTTTCG 59.147 52.381 0.00 2.64 0.00 3.46
2417 5400 3.975670 GGCACTACTAGATGTTTCGATCG 59.024 47.826 9.36 9.36 0.00 3.69
2420 5403 4.899052 CACTACTAGATGTTTCGATCGACG 59.101 45.833 19.26 1.75 44.09 5.12
2438 5421 3.420576 CGACGACGAAAAATGTTGCAAAT 59.579 39.130 0.00 0.00 42.66 2.32
2475 5465 1.334992 CGCGGATGCTATAACCGTCG 61.335 60.000 0.00 0.00 46.95 5.12
2535 5525 6.500041 TGAAGTTTTAGAAACCGTTCCATTG 58.500 36.000 0.27 0.00 33.92 2.82
2548 5538 6.588204 ACCGTTCCATTGCTCATTATACTTA 58.412 36.000 0.00 0.00 0.00 2.24
2549 5539 6.706270 ACCGTTCCATTGCTCATTATACTTAG 59.294 38.462 0.00 0.00 0.00 2.18
2550 5540 6.147821 CCGTTCCATTGCTCATTATACTTAGG 59.852 42.308 0.00 0.00 0.00 2.69
2551 5541 6.147821 CGTTCCATTGCTCATTATACTTAGGG 59.852 42.308 0.00 0.00 0.00 3.53
2552 5542 7.224297 GTTCCATTGCTCATTATACTTAGGGA 58.776 38.462 0.00 0.00 0.00 4.20
2553 5543 7.387265 TCCATTGCTCATTATACTTAGGGAA 57.613 36.000 0.00 0.00 0.00 3.97
2554 5544 7.811282 TCCATTGCTCATTATACTTAGGGAAA 58.189 34.615 0.00 0.00 0.00 3.13
2555 5545 7.719633 TCCATTGCTCATTATACTTAGGGAAAC 59.280 37.037 0.00 0.00 0.00 2.78
2556 5546 7.307989 CCATTGCTCATTATACTTAGGGAAACG 60.308 40.741 0.00 0.00 0.00 3.60
2557 5547 6.229936 TGCTCATTATACTTAGGGAAACGT 57.770 37.500 0.00 0.00 0.00 3.99
2558 5548 6.646267 TGCTCATTATACTTAGGGAAACGTT 58.354 36.000 0.00 0.00 0.00 3.99
2559 5549 6.759827 TGCTCATTATACTTAGGGAAACGTTC 59.240 38.462 0.00 0.00 0.00 3.95
2560 5550 6.074463 GCTCATTATACTTAGGGAAACGTTCG 60.074 42.308 0.00 0.00 0.00 3.95
2561 5551 5.750067 TCATTATACTTAGGGAAACGTTCGC 59.250 40.000 0.00 4.01 42.38 4.70
2562 5552 3.598019 ATACTTAGGGAAACGTTCGCA 57.402 42.857 0.00 0.00 44.27 5.10
2563 5553 1.792006 ACTTAGGGAAACGTTCGCAG 58.208 50.000 0.00 1.66 44.27 5.18
2564 5554 0.442699 CTTAGGGAAACGTTCGCAGC 59.557 55.000 0.00 0.00 44.27 5.25
2565 5555 0.952010 TTAGGGAAACGTTCGCAGCC 60.952 55.000 0.00 0.00 44.27 4.85
2566 5556 4.084888 GGGAAACGTTCGCAGCCG 62.085 66.667 0.00 0.00 41.74 5.52
2567 5557 4.084888 GGAAACGTTCGCAGCCGG 62.085 66.667 0.00 0.00 34.56 6.13
2568 5558 3.343421 GAAACGTTCGCAGCCGGT 61.343 61.111 0.00 0.00 34.56 5.28
2569 5559 3.291167 GAAACGTTCGCAGCCGGTC 62.291 63.158 0.00 0.00 34.56 4.79
2597 5587 4.754667 GTGTTCCGCCGGTCCCTC 62.755 72.222 1.63 0.00 0.00 4.30
2605 5595 4.082523 CCGGTCCCTCGCACACAT 62.083 66.667 0.00 0.00 0.00 3.21
2606 5596 2.815211 CGGTCCCTCGCACACATG 60.815 66.667 0.00 0.00 0.00 3.21
2607 5597 2.436646 GGTCCCTCGCACACATGG 60.437 66.667 0.00 0.00 0.00 3.66
2608 5598 3.127533 GTCCCTCGCACACATGGC 61.128 66.667 0.00 0.00 0.00 4.40
2609 5599 4.408821 TCCCTCGCACACATGGCC 62.409 66.667 0.00 0.00 0.00 5.36
2610 5600 4.415150 CCCTCGCACACATGGCCT 62.415 66.667 3.32 0.00 0.00 5.19
2611 5601 3.129502 CCTCGCACACATGGCCTG 61.130 66.667 3.32 2.01 0.00 4.85
2612 5602 3.807538 CTCGCACACATGGCCTGC 61.808 66.667 3.32 3.64 0.00 4.85
2615 5605 2.745884 GCACACATGGCCTGCGTA 60.746 61.111 3.32 0.00 0.00 4.42
2616 5606 3.039202 GCACACATGGCCTGCGTAC 62.039 63.158 3.32 0.00 0.00 3.67
2617 5607 2.434185 ACACATGGCCTGCGTACG 60.434 61.111 11.84 11.84 0.00 3.67
2618 5608 3.864686 CACATGGCCTGCGTACGC 61.865 66.667 32.49 32.49 42.35 4.42
2634 5624 4.760047 GCAGCGTCGTCCCCACAT 62.760 66.667 0.00 0.00 0.00 3.21
2635 5625 2.509336 CAGCGTCGTCCCCACATC 60.509 66.667 0.00 0.00 0.00 3.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.374758 CGTCATTTGGATCGGCAGTG 59.625 55.000 0.00 0.00 0.00 3.66
1 2 0.744414 CCGTCATTTGGATCGGCAGT 60.744 55.000 0.00 0.00 34.86 4.40
2 3 0.461870 TCCGTCATTTGGATCGGCAG 60.462 55.000 0.00 0.00 38.92 4.85
3 4 0.742990 GTCCGTCATTTGGATCGGCA 60.743 55.000 0.00 0.00 38.92 5.69
4 5 1.762222 CGTCCGTCATTTGGATCGGC 61.762 60.000 0.00 0.00 38.92 5.54
5 6 1.762222 GCGTCCGTCATTTGGATCGG 61.762 60.000 0.00 0.00 39.79 4.18
6 7 1.636340 GCGTCCGTCATTTGGATCG 59.364 57.895 0.00 0.00 37.93 3.69
7 8 1.762222 CGGCGTCCGTCATTTGGATC 61.762 60.000 9.69 0.00 42.73 3.36
8 9 1.813753 CGGCGTCCGTCATTTGGAT 60.814 57.895 9.69 0.00 42.73 3.41
9 10 2.433491 CGGCGTCCGTCATTTGGA 60.433 61.111 9.69 0.00 42.73 3.53
19 20 2.202401 GTCGTACACTCGGCGTCC 60.202 66.667 6.85 0.00 0.00 4.79
20 21 2.202401 GGTCGTACACTCGGCGTC 60.202 66.667 6.85 0.00 36.22 5.19
21 22 4.093952 CGGTCGTACACTCGGCGT 62.094 66.667 6.85 0.00 36.22 5.68
22 23 2.961526 GATCGGTCGTACACTCGGCG 62.962 65.000 0.00 0.00 36.22 6.46
23 24 1.298190 GATCGGTCGTACACTCGGC 60.298 63.158 0.00 0.00 34.52 5.54
24 25 1.354506 GGATCGGTCGTACACTCGG 59.645 63.158 0.00 0.00 0.00 4.63
25 26 1.011463 CGGATCGGTCGTACACTCG 60.011 63.158 0.00 0.00 0.00 4.18
26 27 1.354506 CCGGATCGGTCGTACACTC 59.645 63.158 0.00 0.00 42.73 3.51
27 28 3.506108 CCGGATCGGTCGTACACT 58.494 61.111 0.00 0.00 42.73 3.55
41 42 0.460635 TCCGCTTTTTATCCGTCCGG 60.461 55.000 0.00 0.00 35.83 5.14
42 43 0.648958 GTCCGCTTTTTATCCGTCCG 59.351 55.000 0.00 0.00 0.00 4.79
43 44 1.729284 TGTCCGCTTTTTATCCGTCC 58.271 50.000 0.00 0.00 0.00 4.79
44 45 5.611844 CGATTATGTCCGCTTTTTATCCGTC 60.612 44.000 0.00 0.00 0.00 4.79
45 46 4.210537 CGATTATGTCCGCTTTTTATCCGT 59.789 41.667 0.00 0.00 0.00 4.69
46 47 4.698276 CGATTATGTCCGCTTTTTATCCG 58.302 43.478 0.00 0.00 0.00 4.18
47 48 4.464112 GCGATTATGTCCGCTTTTTATCC 58.536 43.478 0.00 0.00 46.96 2.59
57 58 2.286950 CCAAACATGGCGATTATGTCCG 60.287 50.000 0.00 0.00 37.77 4.79
58 59 2.034558 CCCAAACATGGCGATTATGTCC 59.965 50.000 0.00 0.00 37.77 4.02
59 60 2.687935 ACCCAAACATGGCGATTATGTC 59.312 45.455 0.00 0.00 37.77 3.06
60 61 2.733956 ACCCAAACATGGCGATTATGT 58.266 42.857 0.00 0.00 40.30 2.29
61 62 3.253188 CCTACCCAAACATGGCGATTATG 59.747 47.826 0.00 0.00 0.00 1.90
62 63 3.117663 ACCTACCCAAACATGGCGATTAT 60.118 43.478 0.00 0.00 0.00 1.28
63 64 2.240160 ACCTACCCAAACATGGCGATTA 59.760 45.455 0.00 0.00 0.00 1.75
64 65 1.005450 ACCTACCCAAACATGGCGATT 59.995 47.619 0.00 0.00 0.00 3.34
65 66 0.623723 ACCTACCCAAACATGGCGAT 59.376 50.000 0.00 0.00 0.00 4.58
66 67 0.402504 AACCTACCCAAACATGGCGA 59.597 50.000 0.00 0.00 0.00 5.54
67 68 0.808755 GAACCTACCCAAACATGGCG 59.191 55.000 0.00 0.00 0.00 5.69
68 69 0.808755 CGAACCTACCCAAACATGGC 59.191 55.000 0.00 0.00 0.00 4.40
69 70 2.194201 ACGAACCTACCCAAACATGG 57.806 50.000 0.00 0.00 0.00 3.66
70 71 2.227865 CCAACGAACCTACCCAAACATG 59.772 50.000 0.00 0.00 0.00 3.21
71 72 2.106857 TCCAACGAACCTACCCAAACAT 59.893 45.455 0.00 0.00 0.00 2.71
72 73 1.489649 TCCAACGAACCTACCCAAACA 59.510 47.619 0.00 0.00 0.00 2.83
73 74 2.148768 CTCCAACGAACCTACCCAAAC 58.851 52.381 0.00 0.00 0.00 2.93
74 75 1.770061 ACTCCAACGAACCTACCCAAA 59.230 47.619 0.00 0.00 0.00 3.28
75 76 1.426751 ACTCCAACGAACCTACCCAA 58.573 50.000 0.00 0.00 0.00 4.12
76 77 1.071071 CAACTCCAACGAACCTACCCA 59.929 52.381 0.00 0.00 0.00 4.51
77 78 1.804601 CAACTCCAACGAACCTACCC 58.195 55.000 0.00 0.00 0.00 3.69
78 79 1.154197 GCAACTCCAACGAACCTACC 58.846 55.000 0.00 0.00 0.00 3.18
79 80 2.067013 GAGCAACTCCAACGAACCTAC 58.933 52.381 0.00 0.00 0.00 3.18
80 81 1.968493 AGAGCAACTCCAACGAACCTA 59.032 47.619 0.00 0.00 0.00 3.08
81 82 0.759346 AGAGCAACTCCAACGAACCT 59.241 50.000 0.00 0.00 0.00 3.50
82 83 2.450609 TAGAGCAACTCCAACGAACC 57.549 50.000 0.00 0.00 0.00 3.62
83 84 3.424962 GCATTAGAGCAACTCCAACGAAC 60.425 47.826 0.00 0.00 0.00 3.95
84 85 2.742053 GCATTAGAGCAACTCCAACGAA 59.258 45.455 0.00 0.00 0.00 3.85
85 86 2.346803 GCATTAGAGCAACTCCAACGA 58.653 47.619 0.00 0.00 0.00 3.85
86 87 1.061131 CGCATTAGAGCAACTCCAACG 59.939 52.381 0.00 0.00 0.00 4.10
87 88 1.398390 CCGCATTAGAGCAACTCCAAC 59.602 52.381 0.00 0.00 0.00 3.77
88 89 1.277842 TCCGCATTAGAGCAACTCCAA 59.722 47.619 0.00 0.00 0.00 3.53
89 90 0.901827 TCCGCATTAGAGCAACTCCA 59.098 50.000 0.00 0.00 0.00 3.86
90 91 1.576356 CTCCGCATTAGAGCAACTCC 58.424 55.000 0.00 0.00 0.00 3.85
91 92 1.576356 CCTCCGCATTAGAGCAACTC 58.424 55.000 0.00 0.00 0.00 3.01
92 93 0.179000 CCCTCCGCATTAGAGCAACT 59.821 55.000 0.00 0.00 0.00 3.16
93 94 0.107654 ACCCTCCGCATTAGAGCAAC 60.108 55.000 0.00 0.00 0.00 4.17
94 95 0.107703 CACCCTCCGCATTAGAGCAA 60.108 55.000 0.00 0.00 0.00 3.91
95 96 0.975556 TCACCCTCCGCATTAGAGCA 60.976 55.000 0.00 0.00 0.00 4.26
96 97 0.394565 ATCACCCTCCGCATTAGAGC 59.605 55.000 0.00 0.00 0.00 4.09
97 98 3.511540 TGATATCACCCTCCGCATTAGAG 59.488 47.826 0.00 0.00 0.00 2.43
98 99 3.506398 TGATATCACCCTCCGCATTAGA 58.494 45.455 0.00 0.00 0.00 2.10
99 100 3.961480 TGATATCACCCTCCGCATTAG 57.039 47.619 0.00 0.00 0.00 1.73
100 101 4.141937 GCTATGATATCACCCTCCGCATTA 60.142 45.833 7.78 0.00 0.00 1.90
101 102 3.369892 GCTATGATATCACCCTCCGCATT 60.370 47.826 7.78 0.00 0.00 3.56
102 103 2.169352 GCTATGATATCACCCTCCGCAT 59.831 50.000 7.78 0.00 0.00 4.73
103 104 1.550524 GCTATGATATCACCCTCCGCA 59.449 52.381 7.78 0.00 0.00 5.69
104 105 1.134670 GGCTATGATATCACCCTCCGC 60.135 57.143 7.78 4.62 0.00 5.54
105 106 1.135139 CGGCTATGATATCACCCTCCG 59.865 57.143 7.78 14.04 0.00 4.63
106 107 1.482593 CCGGCTATGATATCACCCTCC 59.517 57.143 7.78 6.34 0.00 4.30
107 108 2.180276 ACCGGCTATGATATCACCCTC 58.820 52.381 7.78 0.00 0.00 4.30
108 109 2.327325 ACCGGCTATGATATCACCCT 57.673 50.000 7.78 0.00 0.00 4.34
109 110 4.546829 TTAACCGGCTATGATATCACCC 57.453 45.455 7.78 8.06 0.00 4.61
110 111 4.694037 GGTTTAACCGGCTATGATATCACC 59.306 45.833 7.78 4.12 0.00 4.02
111 112 5.302360 TGGTTTAACCGGCTATGATATCAC 58.698 41.667 7.78 0.00 42.58 3.06
112 113 5.554437 TGGTTTAACCGGCTATGATATCA 57.446 39.130 8.10 8.10 42.58 2.15
113 114 6.228258 TCTTGGTTTAACCGGCTATGATATC 58.772 40.000 9.77 0.00 42.58 1.63
114 115 6.182507 TCTTGGTTTAACCGGCTATGATAT 57.817 37.500 9.77 0.00 42.58 1.63
115 116 5.617528 TCTTGGTTTAACCGGCTATGATA 57.382 39.130 9.77 0.00 42.58 2.15
116 117 4.497291 TCTTGGTTTAACCGGCTATGAT 57.503 40.909 9.77 0.00 42.58 2.45
117 118 3.985019 TCTTGGTTTAACCGGCTATGA 57.015 42.857 9.77 0.00 42.58 2.15
118 119 6.687081 TTAATCTTGGTTTAACCGGCTATG 57.313 37.500 9.77 0.00 42.58 2.23
119 120 7.683463 GCAATTAATCTTGGTTTAACCGGCTAT 60.683 37.037 9.77 0.00 42.58 2.97
120 121 6.404954 GCAATTAATCTTGGTTTAACCGGCTA 60.405 38.462 9.77 0.00 42.58 3.93
121 122 5.623596 GCAATTAATCTTGGTTTAACCGGCT 60.624 40.000 9.77 0.00 42.58 5.52
122 123 4.565166 GCAATTAATCTTGGTTTAACCGGC 59.435 41.667 9.77 0.00 42.58 6.13
123 124 5.715070 TGCAATTAATCTTGGTTTAACCGG 58.285 37.500 9.77 0.00 42.58 5.28
124 125 5.288472 GCTGCAATTAATCTTGGTTTAACCG 59.712 40.000 9.77 0.00 42.58 4.44
125 126 5.288472 CGCTGCAATTAATCTTGGTTTAACC 59.712 40.000 7.27 7.27 39.22 2.85
126 127 5.288472 CCGCTGCAATTAATCTTGGTTTAAC 59.712 40.000 0.00 0.00 0.00 2.01
127 128 5.047660 ACCGCTGCAATTAATCTTGGTTTAA 60.048 36.000 0.00 0.00 0.00 1.52
128 129 4.461081 ACCGCTGCAATTAATCTTGGTTTA 59.539 37.500 0.00 0.00 0.00 2.01
129 130 3.258123 ACCGCTGCAATTAATCTTGGTTT 59.742 39.130 0.00 0.00 0.00 3.27
130 131 2.825532 ACCGCTGCAATTAATCTTGGTT 59.174 40.909 0.00 0.00 0.00 3.67
131 132 2.446435 ACCGCTGCAATTAATCTTGGT 58.554 42.857 0.00 0.00 0.00 3.67
132 133 3.181397 CAACCGCTGCAATTAATCTTGG 58.819 45.455 0.00 0.00 0.00 3.61
133 134 3.119531 TCCAACCGCTGCAATTAATCTTG 60.120 43.478 0.00 0.00 0.00 3.02
134 135 3.088532 TCCAACCGCTGCAATTAATCTT 58.911 40.909 0.00 0.00 0.00 2.40
135 136 2.722094 TCCAACCGCTGCAATTAATCT 58.278 42.857 0.00 0.00 0.00 2.40
136 137 3.374745 CATCCAACCGCTGCAATTAATC 58.625 45.455 0.00 0.00 0.00 1.75
137 138 2.101249 CCATCCAACCGCTGCAATTAAT 59.899 45.455 0.00 0.00 0.00 1.40
138 139 1.476085 CCATCCAACCGCTGCAATTAA 59.524 47.619 0.00 0.00 0.00 1.40
139 140 1.102154 CCATCCAACCGCTGCAATTA 58.898 50.000 0.00 0.00 0.00 1.40
140 141 0.899717 ACCATCCAACCGCTGCAATT 60.900 50.000 0.00 0.00 0.00 2.32
141 142 1.304381 ACCATCCAACCGCTGCAAT 60.304 52.632 0.00 0.00 0.00 3.56
142 143 2.115052 ACCATCCAACCGCTGCAA 59.885 55.556 0.00 0.00 0.00 4.08
143 144 2.672651 CACCATCCAACCGCTGCA 60.673 61.111 0.00 0.00 0.00 4.41
144 145 2.200170 GAACACCATCCAACCGCTGC 62.200 60.000 0.00 0.00 0.00 5.25
145 146 0.888736 TGAACACCATCCAACCGCTG 60.889 55.000 0.00 0.00 0.00 5.18
146 147 0.889186 GTGAACACCATCCAACCGCT 60.889 55.000 0.00 0.00 0.00 5.52
147 148 1.579429 GTGAACACCATCCAACCGC 59.421 57.895 0.00 0.00 0.00 5.68
157 158 0.736325 CACGGAGATCGGTGAACACC 60.736 60.000 13.55 13.32 46.18 4.16
158 159 1.352156 GCACGGAGATCGGTGAACAC 61.352 60.000 20.72 0.00 46.18 3.32
159 160 1.080093 GCACGGAGATCGGTGAACA 60.080 57.895 20.72 0.00 46.18 3.18
160 161 2.158959 CGCACGGAGATCGGTGAAC 61.159 63.158 20.72 6.45 46.18 3.18
161 162 2.180769 CGCACGGAGATCGGTGAA 59.819 61.111 20.72 0.00 46.18 3.18
162 163 3.060000 ACGCACGGAGATCGGTGA 61.060 61.111 20.72 0.00 46.18 4.02
163 164 2.880879 CACGCACGGAGATCGGTG 60.881 66.667 14.26 14.26 46.08 4.94
164 165 4.129737 CCACGCACGGAGATCGGT 62.130 66.667 0.00 0.00 44.45 4.69
166 167 4.794439 TGCCACGCACGGAGATCG 62.794 66.667 0.00 0.00 45.88 3.69
167 168 2.202932 ATGCCACGCACGGAGATC 60.203 61.111 0.00 0.00 43.04 2.75
168 169 2.202932 GATGCCACGCACGGAGAT 60.203 61.111 0.00 0.00 43.04 2.75
169 170 4.451150 GGATGCCACGCACGGAGA 62.451 66.667 0.00 0.00 43.04 3.71
194 195 4.902645 GGTGGGGCCTGGCTATGC 62.903 72.222 19.68 6.95 0.00 3.14
203 204 4.446413 CGTACACGAGGTGGGGCC 62.446 72.222 0.00 0.00 43.02 5.80
205 206 3.379445 AGCGTACACGAGGTGGGG 61.379 66.667 5.84 0.00 43.02 4.96
206 207 1.945354 ATCAGCGTACACGAGGTGGG 61.945 60.000 5.84 0.00 43.02 4.61
207 208 0.525668 GATCAGCGTACACGAGGTGG 60.526 60.000 5.84 0.00 43.02 4.61
208 209 0.861866 CGATCAGCGTACACGAGGTG 60.862 60.000 5.84 0.00 43.02 4.00
209 210 1.022982 TCGATCAGCGTACACGAGGT 61.023 55.000 5.84 0.00 43.02 3.85
210 211 0.589229 GTCGATCAGCGTACACGAGG 60.589 60.000 5.84 0.00 43.02 4.63
211 212 0.096454 TGTCGATCAGCGTACACGAG 59.904 55.000 5.84 0.00 43.02 4.18
212 213 0.179207 GTGTCGATCAGCGTACACGA 60.179 55.000 5.84 0.00 43.02 4.35
213 214 2.266373 GTGTCGATCAGCGTACACG 58.734 57.895 3.01 0.00 39.39 4.49
214 215 0.179207 TCGTGTCGATCAGCGTACAC 60.179 55.000 7.65 7.65 42.34 2.90
215 216 0.096454 CTCGTGTCGATCAGCGTACA 59.904 55.000 0.00 0.00 41.80 2.90
216 217 0.096628 ACTCGTGTCGATCAGCGTAC 59.903 55.000 0.00 0.00 41.80 3.67
217 218 0.096454 CACTCGTGTCGATCAGCGTA 59.904 55.000 0.00 0.00 41.80 4.42
218 219 1.154207 CACTCGTGTCGATCAGCGT 60.154 57.895 0.00 0.00 41.80 5.07
219 220 2.500442 GCACTCGTGTCGATCAGCG 61.500 63.158 0.00 0.00 42.69 5.18
220 221 1.136872 GAGCACTCGTGTCGATCAGC 61.137 60.000 0.00 0.00 34.61 4.26
221 222 0.859374 CGAGCACTCGTGTCGATCAG 60.859 60.000 11.82 0.00 46.99 2.90
222 223 1.134694 CGAGCACTCGTGTCGATCA 59.865 57.895 11.82 0.00 46.99 2.92
223 224 3.969631 CGAGCACTCGTGTCGATC 58.030 61.111 11.82 0.00 46.99 3.69
232 233 1.074752 CTTTTCCTCTGCGAGCACTC 58.925 55.000 0.00 0.00 0.00 3.51
233 234 0.952984 GCTTTTCCTCTGCGAGCACT 60.953 55.000 0.00 0.00 33.68 4.40
234 235 1.499502 GCTTTTCCTCTGCGAGCAC 59.500 57.895 0.00 0.00 33.68 4.40
235 236 3.972227 GCTTTTCCTCTGCGAGCA 58.028 55.556 0.00 0.00 33.68 4.26
240 241 1.195674 GTCAGAACGCTTTTCCTCTGC 59.804 52.381 0.00 0.00 36.15 4.26
241 242 1.801178 GGTCAGAACGCTTTTCCTCTG 59.199 52.381 0.00 0.00 37.28 3.35
242 243 1.605712 CGGTCAGAACGCTTTTCCTCT 60.606 52.381 0.00 0.00 0.00 3.69
243 244 0.790814 CGGTCAGAACGCTTTTCCTC 59.209 55.000 0.00 0.00 0.00 3.71
244 245 2.914379 CGGTCAGAACGCTTTTCCT 58.086 52.632 0.00 0.00 0.00 3.36
271 272 1.401018 CGTGAATTTTGCTTCGTCCCC 60.401 52.381 0.00 0.00 0.00 4.81
282 283 0.373716 GATCTCGCCGCGTGAATTTT 59.626 50.000 20.14 5.10 33.31 1.82
329 330 3.236005 GAGAAAAGAGAGTTCGGACGTC 58.764 50.000 7.13 7.13 0.00 4.34
330 331 2.030096 GGAGAAAAGAGAGTTCGGACGT 60.030 50.000 0.00 0.00 0.00 4.34
334 335 2.933056 GCCAGGAGAAAAGAGAGTTCGG 60.933 54.545 0.00 0.00 0.00 4.30
344 345 2.378547 ACCTACCATTGCCAGGAGAAAA 59.621 45.455 8.35 0.00 33.44 2.29
348 349 0.911769 TCACCTACCATTGCCAGGAG 59.088 55.000 8.35 2.05 33.44 3.69
369 2945 1.303317 AGCGGACCAACCAACCATC 60.303 57.895 0.00 0.00 38.90 3.51
370 2946 1.603455 CAGCGGACCAACCAACCAT 60.603 57.895 0.00 0.00 38.90 3.55
371 2947 2.203280 CAGCGGACCAACCAACCA 60.203 61.111 0.00 0.00 38.90 3.67
372 2948 2.983592 CCAGCGGACCAACCAACC 60.984 66.667 0.00 0.00 38.90 3.77
394 2970 2.360600 TTAATTGGCGCGGCACCT 60.361 55.556 36.44 25.94 0.00 4.00
407 2983 0.175531 GGCAGCGGCAAATGGTTAAT 59.824 50.000 11.88 0.00 43.71 1.40
452 3028 4.398598 GCGATTGCAACGGCCGTT 62.399 61.111 36.96 36.96 42.15 4.44
494 3071 1.600636 TACGTCGTCCCTTGTCCGT 60.601 57.895 0.00 0.00 0.00 4.69
509 3086 1.446731 CCTTAGTTACGACGCGTACG 58.553 55.000 13.97 20.00 42.13 3.67
510 3087 1.183511 GCCTTAGTTACGACGCGTAC 58.816 55.000 13.97 6.78 42.13 3.67
511 3088 0.801872 TGCCTTAGTTACGACGCGTA 59.198 50.000 13.97 7.80 41.54 4.42
512 3089 0.039256 TTGCCTTAGTTACGACGCGT 60.039 50.000 13.85 13.85 44.35 6.01
513 3090 0.638746 CTTGCCTTAGTTACGACGCG 59.361 55.000 3.53 3.53 0.00 6.01
514 3091 0.369248 GCTTGCCTTAGTTACGACGC 59.631 55.000 0.00 0.00 0.00 5.19
515 3092 0.638746 CGCTTGCCTTAGTTACGACG 59.361 55.000 0.00 0.00 0.00 5.12
521 3098 1.014564 GTCGCTCGCTTGCCTTAGTT 61.015 55.000 0.00 0.00 0.00 2.24
524 3101 1.446099 CTGTCGCTCGCTTGCCTTA 60.446 57.895 0.00 0.00 0.00 2.69
544 3121 1.006922 GTTGGGCAAAGCTGTCAGC 60.007 57.895 17.48 17.48 42.84 4.26
578 3155 3.552132 TGGGCATCGTGAGCTAATTAA 57.448 42.857 0.00 0.00 0.00 1.40
581 3158 1.210478 ACTTGGGCATCGTGAGCTAAT 59.790 47.619 0.00 0.00 0.00 1.73
591 3168 1.896220 TCTTGACACACTTGGGCATC 58.104 50.000 0.00 0.00 0.00 3.91
602 3181 2.960819 ACTTGGCGAGTATCTTGACAC 58.039 47.619 5.34 0.00 31.72 3.67
615 3194 1.667236 TCCATGATTGCTACTTGGCG 58.333 50.000 0.00 0.00 34.13 5.69
616 3195 2.225019 CGATCCATGATTGCTACTTGGC 59.775 50.000 0.00 0.00 34.13 4.52
617 3196 3.732212 TCGATCCATGATTGCTACTTGG 58.268 45.455 0.00 0.00 35.01 3.61
618 3197 4.153655 CCATCGATCCATGATTGCTACTTG 59.846 45.833 1.38 0.00 0.00 3.16
619 3198 4.040829 TCCATCGATCCATGATTGCTACTT 59.959 41.667 1.38 0.00 0.00 2.24
620 3199 3.580022 TCCATCGATCCATGATTGCTACT 59.420 43.478 1.38 0.00 0.00 2.57
621 3200 3.930336 TCCATCGATCCATGATTGCTAC 58.070 45.455 1.38 0.00 0.00 3.58
623 3202 2.874861 GCTCCATCGATCCATGATTGCT 60.875 50.000 1.38 0.00 0.00 3.91
626 3205 3.144506 GTTGCTCCATCGATCCATGATT 58.855 45.455 1.38 0.00 0.00 2.57
628 3207 1.202687 GGTTGCTCCATCGATCCATGA 60.203 52.381 1.38 0.00 35.97 3.07
629 3208 1.233019 GGTTGCTCCATCGATCCATG 58.767 55.000 0.00 0.00 35.97 3.66
630 3209 0.109342 GGGTTGCTCCATCGATCCAT 59.891 55.000 0.00 0.00 38.11 3.41
631 3210 1.526887 GGGTTGCTCCATCGATCCA 59.473 57.895 0.00 0.00 38.11 3.41
633 3212 1.595382 CGGGGTTGCTCCATCGATC 60.595 63.158 0.00 0.00 36.85 3.69
634 3213 2.505982 CGGGGTTGCTCCATCGAT 59.494 61.111 0.00 0.00 36.85 3.59
635 3214 3.781307 CCGGGGTTGCTCCATCGA 61.781 66.667 0.00 0.00 36.85 3.59
666 3245 1.214062 CGTCCTGTGCTGGAGTCTC 59.786 63.158 0.00 0.00 36.69 3.36
674 3253 4.039357 CCGACGACGTCCTGTGCT 62.039 66.667 21.63 0.00 37.88 4.40
678 3257 3.720193 ACGACCGACGACGTCCTG 61.720 66.667 21.63 15.24 45.77 3.86
713 3292 4.418401 GTACGTACGGTGGCGCCA 62.418 66.667 29.03 29.03 36.97 5.69
750 3329 1.484240 CCATTGGAGAGTGGAGGAGAC 59.516 57.143 0.00 0.00 37.72 3.36
753 3332 1.617018 CGCCATTGGAGAGTGGAGGA 61.617 60.000 6.95 0.00 37.72 3.71
754 3333 1.153289 CGCCATTGGAGAGTGGAGG 60.153 63.158 6.95 0.00 37.72 4.30
790 3370 4.232248 GTTAATCCGCGGGCGTGC 62.232 66.667 27.83 9.76 37.81 5.34
803 3393 1.102978 GGGACTAGGGCGTACGTTAA 58.897 55.000 17.90 0.00 0.00 2.01
804 3394 0.034574 TGGGACTAGGGCGTACGTTA 60.035 55.000 17.90 6.62 0.00 3.18
805 3395 1.304381 TGGGACTAGGGCGTACGTT 60.304 57.895 17.90 5.75 0.00 3.99
828 3430 1.199097 CGTGTATTGTTGGGAGTTGGC 59.801 52.381 0.00 0.00 0.00 4.52
843 3445 2.938451 CGTACTACCATGACTCCGTGTA 59.062 50.000 0.00 0.00 0.00 2.90
853 3455 0.804544 CCGTGGCACGTACTACCATG 60.805 60.000 34.74 15.07 40.58 3.66
855 3457 2.964174 CCGTGGCACGTACTACCA 59.036 61.111 34.74 0.00 40.58 3.25
856 3458 2.507769 GCCGTGGCACGTACTACC 60.508 66.667 34.74 14.15 40.58 3.18
857 3459 2.507769 GGCCGTGGCACGTACTAC 60.508 66.667 34.74 19.40 44.11 2.73
858 3460 2.677524 AGGCCGTGGCACGTACTA 60.678 61.111 34.74 0.00 44.11 1.82
890 3492 2.503061 CGAGTGATGGAGCCTGGG 59.497 66.667 0.00 0.00 0.00 4.45
900 3502 0.741326 ACGATGTAGCAGCGAGTGAT 59.259 50.000 13.63 0.00 46.56 3.06
941 3580 1.091537 GGAATGAATTGGAACGGCGA 58.908 50.000 16.62 0.00 0.00 5.54
942 3581 0.808125 TGGAATGAATTGGAACGGCG 59.192 50.000 4.80 4.80 0.00 6.46
987 3626 1.079543 GGCCATCGATCCTCGGATG 60.080 63.158 2.58 2.33 40.88 3.51
1092 3766 7.406031 TCAGATCAAACTAACTACCAGTAGG 57.594 40.000 9.53 0.00 37.49 3.18
1093 3767 7.858382 CGATCAGATCAAACTAACTACCAGTAG 59.142 40.741 11.12 3.25 39.04 2.57
1120 3794 1.597854 CAGCCGTCAGAGCACCAAA 60.598 57.895 0.00 0.00 0.00 3.28
1228 3938 2.913603 TCGGAGAAGAAGGGGAGTAA 57.086 50.000 0.00 0.00 0.00 2.24
1229 3939 2.913603 TTCGGAGAAGAAGGGGAGTA 57.086 50.000 0.00 0.00 45.90 2.59
1230 3940 2.112190 GATTCGGAGAAGAAGGGGAGT 58.888 52.381 0.00 0.00 45.90 3.85
1233 3943 0.105039 CGGATTCGGAGAAGAAGGGG 59.895 60.000 0.00 0.00 45.90 4.79
1234 3944 0.824759 ACGGATTCGGAGAAGAAGGG 59.175 55.000 0.00 0.00 45.90 3.95
1235 3945 1.202428 GGACGGATTCGGAGAAGAAGG 60.202 57.143 0.00 0.00 45.90 3.46
1379 4112 0.750546 CTCGTCGATACCTGGGGACA 60.751 60.000 0.00 0.00 39.59 4.02
1380 4113 0.465097 TCTCGTCGATACCTGGGGAC 60.465 60.000 0.00 0.00 0.00 4.46
1403 4136 0.108138 GTCCTCCTTCATGTCCACGG 60.108 60.000 0.00 0.00 0.00 4.94
1419 4152 0.736325 CCACGACCGTCATCTTGTCC 60.736 60.000 0.00 0.00 0.00 4.02
1512 4245 2.040442 TCCTCATCCTTGGCCGGA 59.960 61.111 5.05 1.40 37.50 5.14
1569 4302 3.258228 GGCCTTCTTCTTCTTCTTCTCG 58.742 50.000 0.00 0.00 0.00 4.04
1611 4569 0.253044 GGTGCAGGTAGGCTGATGAA 59.747 55.000 0.00 0.00 34.04 2.57
1710 4687 1.485838 CGTATCTGGCAAGCTCAGCG 61.486 60.000 5.18 0.00 32.63 5.18
1757 4734 7.043192 GCATGCAGCAGTTTTATTTATTACCAG 60.043 37.037 14.21 0.00 44.79 4.00
1758 4735 6.756074 GCATGCAGCAGTTTTATTTATTACCA 59.244 34.615 14.21 0.00 44.79 3.25
1784 4761 6.096695 GCGTACATTCAAAACCCAAATGTAT 58.903 36.000 9.58 0.00 43.73 2.29
1785 4762 5.462405 GCGTACATTCAAAACCCAAATGTA 58.538 37.500 3.69 3.69 42.14 2.29
1786 4763 4.303282 GCGTACATTCAAAACCCAAATGT 58.697 39.130 5.42 5.42 43.83 2.71
1789 4766 2.287668 CGGCGTACATTCAAAACCCAAA 60.288 45.455 0.00 0.00 0.00 3.28
1790 4767 1.267261 CGGCGTACATTCAAAACCCAA 59.733 47.619 0.00 0.00 0.00 4.12
1791 4768 0.875728 CGGCGTACATTCAAAACCCA 59.124 50.000 0.00 0.00 0.00 4.51
1792 4769 0.876399 ACGGCGTACATTCAAAACCC 59.124 50.000 12.58 0.00 0.00 4.11
1793 4770 2.577450 GAACGGCGTACATTCAAAACC 58.423 47.619 15.20 0.00 0.00 3.27
1794 4771 2.227556 CGAACGGCGTACATTCAAAAC 58.772 47.619 15.20 0.00 34.64 2.43
1795 4772 2.580729 CGAACGGCGTACATTCAAAA 57.419 45.000 15.20 0.00 34.64 2.44
1823 4800 6.513884 CGCACGTAAGGACAAAGGACTATATA 60.514 42.308 0.00 0.00 46.39 0.86
1850 4827 0.107703 GATGGACGGAGCATGTTGGA 60.108 55.000 0.00 0.00 0.00 3.53
1859 4836 1.066215 TGTGTTGGATGATGGACGGAG 60.066 52.381 0.00 0.00 0.00 4.63
1990 4971 2.202518 GCTTCGCAGCCGTACGTA 60.203 61.111 15.21 0.00 40.61 3.57
2037 5020 2.558378 CATGCGACAGAGTTGGATCAT 58.442 47.619 0.00 0.00 0.00 2.45
2052 5035 2.101575 GCCACACAGATGCATGCG 59.898 61.111 14.09 0.35 0.00 4.73
2075 5058 2.138179 ACCGGCACACACTACCACT 61.138 57.895 0.00 0.00 0.00 4.00
2164 5147 8.261522 GGAAGATTCTACACTTCTTGGAATAGT 58.738 37.037 0.00 0.00 41.25 2.12
2203 5186 0.890683 GCTTGTTTGGGGGTCATCTG 59.109 55.000 0.00 0.00 0.00 2.90
2263 5246 0.878086 GACAATCGAGGCCTAGCTGC 60.878 60.000 4.42 0.00 0.00 5.25
2266 5249 1.789506 GATGACAATCGAGGCCTAGC 58.210 55.000 4.42 0.00 0.00 3.42
2294 5277 7.116948 CACACCGTTAGGATAATCATCTGATTC 59.883 40.741 8.63 0.00 40.96 2.52
2312 5295 0.320697 GAGTTCTAGGCCACACCGTT 59.679 55.000 5.01 0.00 46.52 4.44
2314 5297 0.108615 CTGAGTTCTAGGCCACACCG 60.109 60.000 5.01 0.00 46.52 4.94
2318 5301 1.135344 GTCGACTGAGTTCTAGGCCAC 60.135 57.143 8.70 0.00 0.00 5.01
2342 5325 5.629849 CACTCGATTGAGACTTCGTTAAGTT 59.370 40.000 17.27 0.00 46.09 2.66
2378 5361 1.154205 GCCGCTCGTAGCATCACAAT 61.154 55.000 7.47 0.00 42.58 2.71
2384 5367 1.065928 GTAGTGCCGCTCGTAGCAT 59.934 57.895 7.47 0.00 42.58 3.79
2413 5396 2.832745 GCAACATTTTTCGTCGTCGATC 59.167 45.455 5.44 0.00 45.65 3.69
2417 5400 4.947077 ATTTGCAACATTTTTCGTCGTC 57.053 36.364 0.00 0.00 0.00 4.20
2448 5431 1.148310 ATAGCATCCGCGTATGTTGC 58.852 50.000 13.46 10.59 45.49 4.17
2475 5465 9.436957 TTCTTTGTAGGATGTCTTCAATTAGAC 57.563 33.333 1.97 1.97 43.86 2.59
2521 5511 3.575965 AATGAGCAATGGAACGGTTTC 57.424 42.857 0.00 0.00 0.00 2.78
2527 5517 7.224297 TCCCTAAGTATAATGAGCAATGGAAC 58.776 38.462 0.00 0.00 0.00 3.62
2535 5525 6.074463 CGAACGTTTCCCTAAGTATAATGAGC 60.074 42.308 0.46 0.00 0.00 4.26
2548 5538 2.668550 GGCTGCGAACGTTTCCCT 60.669 61.111 0.46 0.00 0.00 4.20
2549 5539 4.084888 CGGCTGCGAACGTTTCCC 62.085 66.667 0.46 0.00 0.00 3.97
2550 5540 4.084888 CCGGCTGCGAACGTTTCC 62.085 66.667 0.46 0.00 0.00 3.13
2551 5541 3.291167 GACCGGCTGCGAACGTTTC 62.291 63.158 0.00 0.00 0.00 2.78
2552 5542 3.343421 GACCGGCTGCGAACGTTT 61.343 61.111 0.00 0.00 0.00 3.60
2580 5570 4.754667 GAGGGACCGGCGGAACAC 62.755 72.222 35.78 25.65 0.00 3.32
2588 5578 4.082523 ATGTGTGCGAGGGACCGG 62.083 66.667 0.00 0.00 0.00 5.28
2589 5579 2.815211 CATGTGTGCGAGGGACCG 60.815 66.667 0.00 0.00 0.00 4.79
2590 5580 2.436646 CCATGTGTGCGAGGGACC 60.437 66.667 0.00 0.00 0.00 4.46
2591 5581 3.127533 GCCATGTGTGCGAGGGAC 61.128 66.667 0.00 0.00 0.00 4.46
2592 5582 4.408821 GGCCATGTGTGCGAGGGA 62.409 66.667 0.00 0.00 0.00 4.20
2593 5583 4.415150 AGGCCATGTGTGCGAGGG 62.415 66.667 5.01 0.00 0.00 4.30
2594 5584 3.129502 CAGGCCATGTGTGCGAGG 61.130 66.667 5.01 0.00 0.00 4.63
2595 5585 3.807538 GCAGGCCATGTGTGCGAG 61.808 66.667 5.01 0.00 0.00 5.03
2601 5591 3.864686 GCGTACGCAGGCCATGTG 61.865 66.667 33.90 9.89 45.35 3.21
2617 5607 4.760047 ATGTGGGGACGACGCTGC 62.760 66.667 0.00 0.00 0.00 5.25
2618 5608 2.509336 GATGTGGGGACGACGCTG 60.509 66.667 0.00 0.00 0.00 5.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.