Multiple sequence alignment - TraesCS2D01G539700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G539700 chr2D 100.000 5066 0 0 1 5066 619958439 619953374 0.000000e+00 9356.0
1 TraesCS2D01G539700 chr2D 95.758 165 7 0 1492 1656 445733832 445733668 3.010000e-67 267.0
2 TraesCS2D01G539700 chrUn 91.671 1993 120 24 2425 4403 23298120 23296160 0.000000e+00 2719.0
3 TraesCS2D01G539700 chrUn 92.336 809 42 12 696 1493 23299614 23298815 0.000000e+00 1133.0
4 TraesCS2D01G539700 chrUn 93.741 703 37 4 1685 2385 23298819 23298122 0.000000e+00 1048.0
5 TraesCS2D01G539700 chrUn 86.701 391 42 3 289 670 23300060 23299671 4.690000e-115 425.0
6 TraesCS2D01G539700 chrUn 92.188 64 5 0 222 285 23302815 23302752 1.940000e-14 91.6
7 TraesCS2D01G539700 chr2A 92.296 1285 75 15 1705 2981 751513566 751512298 0.000000e+00 1803.0
8 TraesCS2D01G539700 chr2A 90.065 765 50 9 2981 3737 751512230 751511484 0.000000e+00 968.0
9 TraesCS2D01G539700 chr2A 91.619 525 35 6 3882 4403 751511373 751510855 0.000000e+00 717.0
10 TraesCS2D01G539700 chr2A 95.930 344 14 0 983 1326 751514233 751513890 4.430000e-155 558.0
11 TraesCS2D01G539700 chr2A 93.210 162 10 1 1333 1493 751513774 751513613 2.360000e-58 237.0
12 TraesCS2D01G539700 chr2A 92.105 76 4 2 3809 3884 751511482 751511409 6.940000e-19 106.0
13 TraesCS2D01G539700 chr2A 84.507 71 7 4 894 963 751514287 751514220 3.270000e-07 67.6
14 TraesCS2D01G539700 chr7A 85.093 644 91 3 4428 5066 252192265 252191622 0.000000e+00 652.0
15 TraesCS2D01G539700 chr1B 82.759 638 101 6 4434 5066 684342468 684343101 1.230000e-155 560.0
16 TraesCS2D01G539700 chr1B 78.912 147 26 5 239 382 492378146 492378290 1.500000e-15 95.3
17 TraesCS2D01G539700 chr2B 82.753 632 91 16 4444 5066 491708098 491707476 9.590000e-152 547.0
18 TraesCS2D01G539700 chr1D 81.887 657 108 9 4419 5066 484031375 484032029 1.240000e-150 544.0
19 TraesCS2D01G539700 chr1D 81.734 646 110 7 4428 5066 112915934 112916578 2.690000e-147 532.0
20 TraesCS2D01G539700 chr1D 82.623 610 89 15 4462 5066 430999097 430999694 1.620000e-144 523.0
21 TraesCS2D01G539700 chr6A 82.006 628 101 8 4446 5066 564731719 564731097 1.620000e-144 523.0
22 TraesCS2D01G539700 chr6A 94.706 170 9 0 1487 1656 73573916 73573747 1.080000e-66 265.0
23 TraesCS2D01G539700 chr6D 81.534 639 108 7 4435 5066 346072707 346072072 7.520000e-143 518.0
24 TraesCS2D01G539700 chr5A 80.811 641 109 11 4434 5066 53242248 53241614 1.640000e-134 490.0
25 TraesCS2D01G539700 chr3B 95.833 168 7 0 1487 1654 183601081 183601248 6.460000e-69 272.0
26 TraesCS2D01G539700 chr3B 92.021 188 15 0 1122 1309 247077947 247077760 1.080000e-66 265.0
27 TraesCS2D01G539700 chr3B 93.678 174 10 1 1490 1663 540174927 540175099 5.030000e-65 259.0
28 TraesCS2D01G539700 chr3B 90.323 186 18 0 1124 1309 246968837 246968652 1.410000e-60 244.0
29 TraesCS2D01G539700 chr4B 94.253 174 8 2 1492 1664 483266540 483266368 1.080000e-66 265.0
30 TraesCS2D01G539700 chr4B 95.732 164 7 0 1491 1654 660120762 660120599 1.080000e-66 265.0
31 TraesCS2D01G539700 chr4B 95.181 166 7 1 1489 1653 63753837 63754002 1.400000e-65 261.0
32 TraesCS2D01G539700 chr3A 95.732 164 7 0 1490 1653 659527393 659527230 1.080000e-66 265.0
33 TraesCS2D01G539700 chr3D 95.706 163 7 0 1492 1654 410670063 410670225 3.890000e-66 263.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G539700 chr2D 619953374 619958439 5065 True 9356.000000 9356 100.000000 1 5066 1 chr2D.!!$R2 5065
1 TraesCS2D01G539700 chrUn 23296160 23302815 6655 True 1083.320000 2719 91.327400 222 4403 5 chrUn.!!$R1 4181
2 TraesCS2D01G539700 chr2A 751510855 751514287 3432 True 636.657143 1803 91.390286 894 4403 7 chr2A.!!$R1 3509
3 TraesCS2D01G539700 chr7A 252191622 252192265 643 True 652.000000 652 85.093000 4428 5066 1 chr7A.!!$R1 638
4 TraesCS2D01G539700 chr1B 684342468 684343101 633 False 560.000000 560 82.759000 4434 5066 1 chr1B.!!$F2 632
5 TraesCS2D01G539700 chr2B 491707476 491708098 622 True 547.000000 547 82.753000 4444 5066 1 chr2B.!!$R1 622
6 TraesCS2D01G539700 chr1D 484031375 484032029 654 False 544.000000 544 81.887000 4419 5066 1 chr1D.!!$F3 647
7 TraesCS2D01G539700 chr1D 112915934 112916578 644 False 532.000000 532 81.734000 4428 5066 1 chr1D.!!$F1 638
8 TraesCS2D01G539700 chr1D 430999097 430999694 597 False 523.000000 523 82.623000 4462 5066 1 chr1D.!!$F2 604
9 TraesCS2D01G539700 chr6A 564731097 564731719 622 True 523.000000 523 82.006000 4446 5066 1 chr6A.!!$R2 620
10 TraesCS2D01G539700 chr6D 346072072 346072707 635 True 518.000000 518 81.534000 4435 5066 1 chr6D.!!$R1 631
11 TraesCS2D01G539700 chr5A 53241614 53242248 634 True 490.000000 490 80.811000 4434 5066 1 chr5A.!!$R1 632

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
742 3471 0.032130 TGTGACTCAGGCTGTTCGAC 59.968 55.0 15.27 12.41 0.0 4.20 F
998 3744 0.037734 AAAACCTCCGGCGAAATCCT 59.962 50.0 9.30 0.00 0.0 3.24 F
1074 3820 0.116342 TGGAGTCCAGCCCTGAAGTA 59.884 55.0 8.12 0.00 0.0 2.24 F
2981 5860 0.179015 TTGCTTGTACCGGCTTGGAA 60.179 50.0 0.00 0.00 42.0 3.53 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1641 4497 0.178987 ATGCGATCTACTCCCTCGGT 60.179 55.000 0.00 0.0 33.17 4.69 R
2972 5851 0.521735 GCCTTTACAGTTCCAAGCCG 59.478 55.000 0.00 0.0 0.00 5.52 R
2983 5862 8.368668 GCTCTCTATTTATTCTAGGCCTTTACA 58.631 37.037 12.58 0.0 0.00 2.41 R
4592 7592 0.106708 GGCAGTGGAGTGTGAAGTGA 59.893 55.000 0.00 0.0 0.00 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.283145 AAGCAGGCATGAACAAGAGT 57.717 45.000 0.62 0.00 0.00 3.24
20 21 1.531423 AGCAGGCATGAACAAGAGTG 58.469 50.000 0.62 0.00 0.00 3.51
21 22 1.072806 AGCAGGCATGAACAAGAGTGA 59.927 47.619 0.62 0.00 0.00 3.41
22 23 2.089980 GCAGGCATGAACAAGAGTGAT 58.910 47.619 0.62 0.00 0.00 3.06
23 24 2.097142 GCAGGCATGAACAAGAGTGATC 59.903 50.000 0.62 0.00 0.00 2.92
24 25 3.607741 CAGGCATGAACAAGAGTGATCT 58.392 45.455 0.00 0.00 0.00 2.75
25 26 4.008330 CAGGCATGAACAAGAGTGATCTT 58.992 43.478 0.00 0.00 0.00 2.40
34 35 4.778534 CAAGAGTGATCTTGCCAACAAT 57.221 40.909 5.15 0.00 40.29 2.71
35 36 5.885230 CAAGAGTGATCTTGCCAACAATA 57.115 39.130 5.15 0.00 40.29 1.90
36 37 6.446781 CAAGAGTGATCTTGCCAACAATAT 57.553 37.500 5.15 0.00 40.29 1.28
37 38 6.860080 CAAGAGTGATCTTGCCAACAATATT 58.140 36.000 5.15 0.00 40.29 1.28
38 39 7.988737 CAAGAGTGATCTTGCCAACAATATTA 58.011 34.615 5.15 0.00 40.29 0.98
39 40 8.461222 CAAGAGTGATCTTGCCAACAATATTAA 58.539 33.333 5.15 0.00 40.29 1.40
40 41 8.218338 AGAGTGATCTTGCCAACAATATTAAG 57.782 34.615 0.00 0.00 34.61 1.85
41 42 6.799512 AGTGATCTTGCCAACAATATTAAGC 58.200 36.000 0.00 0.00 34.61 3.09
42 43 6.377996 AGTGATCTTGCCAACAATATTAAGCA 59.622 34.615 0.00 0.00 34.61 3.91
43 44 7.069085 AGTGATCTTGCCAACAATATTAAGCAT 59.931 33.333 0.00 0.00 34.61 3.79
44 45 7.707893 GTGATCTTGCCAACAATATTAAGCATT 59.292 33.333 0.00 0.00 34.61 3.56
45 46 8.259411 TGATCTTGCCAACAATATTAAGCATTT 58.741 29.630 0.00 0.00 34.61 2.32
46 47 9.101655 GATCTTGCCAACAATATTAAGCATTTT 57.898 29.630 0.00 0.00 34.61 1.82
47 48 8.254178 TCTTGCCAACAATATTAAGCATTTTG 57.746 30.769 0.00 0.00 34.61 2.44
48 49 6.419980 TGCCAACAATATTAAGCATTTTGC 57.580 33.333 0.00 0.00 45.46 3.68
49 50 5.353678 TGCCAACAATATTAAGCATTTTGCC 59.646 36.000 0.00 0.00 46.52 4.52
50 51 5.585844 GCCAACAATATTAAGCATTTTGCCT 59.414 36.000 0.00 0.00 46.52 4.75
51 52 6.093909 GCCAACAATATTAAGCATTTTGCCTT 59.906 34.615 0.00 0.00 46.52 4.35
52 53 7.465989 CCAACAATATTAAGCATTTTGCCTTG 58.534 34.615 0.00 0.00 46.52 3.61
53 54 6.667007 ACAATATTAAGCATTTTGCCTTGC 57.333 33.333 0.00 0.00 46.52 4.01
54 55 5.585844 ACAATATTAAGCATTTTGCCTTGCC 59.414 36.000 0.00 0.00 46.52 4.52
55 56 3.699411 ATTAAGCATTTTGCCTTGCCA 57.301 38.095 0.00 0.00 46.52 4.92
56 57 2.747396 TAAGCATTTTGCCTTGCCAG 57.253 45.000 0.00 0.00 46.52 4.85
57 58 0.604511 AAGCATTTTGCCTTGCCAGC 60.605 50.000 0.00 0.00 46.52 4.85
58 59 1.301874 GCATTTTGCCTTGCCAGCA 60.302 52.632 0.00 0.00 37.42 4.41
59 60 1.571215 GCATTTTGCCTTGCCAGCAC 61.571 55.000 0.00 0.00 40.69 4.40
60 61 0.249953 CATTTTGCCTTGCCAGCACA 60.250 50.000 0.00 0.00 40.69 4.57
61 62 0.249996 ATTTTGCCTTGCCAGCACAC 60.250 50.000 0.00 0.00 40.69 3.82
62 63 1.611474 TTTTGCCTTGCCAGCACACA 61.611 50.000 0.00 0.00 40.69 3.72
63 64 1.401318 TTTGCCTTGCCAGCACACAT 61.401 50.000 0.00 0.00 40.69 3.21
64 65 2.089887 TTGCCTTGCCAGCACACATG 62.090 55.000 0.00 0.00 40.69 3.21
65 66 2.567497 GCCTTGCCAGCACACATGT 61.567 57.895 0.00 0.00 0.00 3.21
66 67 1.582968 CCTTGCCAGCACACATGTC 59.417 57.895 0.00 0.00 0.00 3.06
67 68 0.892358 CCTTGCCAGCACACATGTCT 60.892 55.000 0.00 0.00 0.00 3.41
68 69 0.956633 CTTGCCAGCACACATGTCTT 59.043 50.000 0.00 0.00 0.00 3.01
69 70 1.338973 CTTGCCAGCACACATGTCTTT 59.661 47.619 0.00 0.00 0.00 2.52
70 71 0.953727 TGCCAGCACACATGTCTTTC 59.046 50.000 0.00 0.00 0.00 2.62
71 72 1.242076 GCCAGCACACATGTCTTTCT 58.758 50.000 0.00 0.00 0.00 2.52
72 73 1.198637 GCCAGCACACATGTCTTTCTC 59.801 52.381 0.00 0.00 0.00 2.87
73 74 2.775890 CCAGCACACATGTCTTTCTCT 58.224 47.619 0.00 0.00 0.00 3.10
74 75 3.866066 GCCAGCACACATGTCTTTCTCTA 60.866 47.826 0.00 0.00 0.00 2.43
75 76 4.511527 CCAGCACACATGTCTTTCTCTAT 58.488 43.478 0.00 0.00 0.00 1.98
76 77 4.940046 CCAGCACACATGTCTTTCTCTATT 59.060 41.667 0.00 0.00 0.00 1.73
77 78 5.413833 CCAGCACACATGTCTTTCTCTATTT 59.586 40.000 0.00 0.00 0.00 1.40
78 79 6.072286 CCAGCACACATGTCTTTCTCTATTTT 60.072 38.462 0.00 0.00 0.00 1.82
79 80 7.365741 CAGCACACATGTCTTTCTCTATTTTT 58.634 34.615 0.00 0.00 0.00 1.94
97 98 4.788925 TTTTTCTATCATCCCATCCGGT 57.211 40.909 0.00 0.00 0.00 5.28
98 99 3.769739 TTTCTATCATCCCATCCGGTG 57.230 47.619 0.00 0.00 0.00 4.94
99 100 2.398754 TCTATCATCCCATCCGGTGT 57.601 50.000 0.00 0.00 0.00 4.16
100 101 2.689658 TCTATCATCCCATCCGGTGTT 58.310 47.619 0.00 0.00 0.00 3.32
101 102 3.045634 TCTATCATCCCATCCGGTGTTT 58.954 45.455 0.00 0.00 0.00 2.83
102 103 4.228010 TCTATCATCCCATCCGGTGTTTA 58.772 43.478 0.00 0.00 0.00 2.01
103 104 4.844085 TCTATCATCCCATCCGGTGTTTAT 59.156 41.667 0.00 0.00 0.00 1.40
104 105 3.943671 TCATCCCATCCGGTGTTTATT 57.056 42.857 0.00 0.00 0.00 1.40
105 106 3.550820 TCATCCCATCCGGTGTTTATTG 58.449 45.455 0.00 0.00 0.00 1.90
106 107 3.053991 TCATCCCATCCGGTGTTTATTGT 60.054 43.478 0.00 0.00 0.00 2.71
107 108 3.443145 TCCCATCCGGTGTTTATTGTT 57.557 42.857 0.00 0.00 0.00 2.83
108 109 4.571369 TCCCATCCGGTGTTTATTGTTA 57.429 40.909 0.00 0.00 0.00 2.41
109 110 4.919793 TCCCATCCGGTGTTTATTGTTAA 58.080 39.130 0.00 0.00 0.00 2.01
110 111 5.511363 TCCCATCCGGTGTTTATTGTTAAT 58.489 37.500 0.00 0.00 0.00 1.40
111 112 5.952947 TCCCATCCGGTGTTTATTGTTAATT 59.047 36.000 0.00 0.00 0.00 1.40
112 113 6.095720 TCCCATCCGGTGTTTATTGTTAATTC 59.904 38.462 0.00 0.00 0.00 2.17
113 114 6.096282 CCCATCCGGTGTTTATTGTTAATTCT 59.904 38.462 0.00 0.00 0.00 2.40
114 115 7.193595 CCATCCGGTGTTTATTGTTAATTCTC 58.806 38.462 0.00 0.00 0.00 2.87
115 116 7.148154 CCATCCGGTGTTTATTGTTAATTCTCA 60.148 37.037 0.00 0.00 0.00 3.27
116 117 7.136289 TCCGGTGTTTATTGTTAATTCTCAC 57.864 36.000 0.00 0.00 0.00 3.51
117 118 6.711194 TCCGGTGTTTATTGTTAATTCTCACA 59.289 34.615 0.00 0.00 0.00 3.58
118 119 7.392113 TCCGGTGTTTATTGTTAATTCTCACAT 59.608 33.333 0.00 0.00 0.00 3.21
119 120 8.026607 CCGGTGTTTATTGTTAATTCTCACATT 58.973 33.333 0.00 0.00 0.00 2.71
134 135 5.911752 TCTCACATTAGAGAGAAGCATTCC 58.088 41.667 0.00 0.00 38.24 3.01
135 136 5.163364 TCTCACATTAGAGAGAAGCATTCCC 60.163 44.000 0.00 0.00 38.24 3.97
136 137 7.541826 TCTCACATTAGAGAGAAGCATTCCCA 61.542 42.308 0.00 0.00 38.24 4.37
137 138 9.253295 TCTCACATTAGAGAGAAGCATTCCCAG 62.253 44.444 0.00 0.00 38.24 4.45
148 149 4.713792 AGCATTCCCAGATACTTTAGGG 57.286 45.455 0.00 0.00 42.86 3.53
149 150 3.395941 AGCATTCCCAGATACTTTAGGGG 59.604 47.826 0.00 0.00 41.77 4.79
150 151 3.394606 GCATTCCCAGATACTTTAGGGGA 59.605 47.826 0.00 0.00 45.84 4.81
153 154 4.363546 TCCCAGATACTTTAGGGGAACT 57.636 45.455 0.00 0.00 44.59 3.01
154 155 4.037927 TCCCAGATACTTTAGGGGAACTG 58.962 47.826 0.00 0.00 44.59 3.16
155 156 4.037927 CCCAGATACTTTAGGGGAACTGA 58.962 47.826 0.00 0.00 41.49 3.41
156 157 4.660771 CCCAGATACTTTAGGGGAACTGAT 59.339 45.833 0.00 0.00 41.49 2.90
157 158 5.221742 CCCAGATACTTTAGGGGAACTGATC 60.222 48.000 0.00 0.00 41.49 2.92
158 159 5.509840 CCAGATACTTTAGGGGAACTGATCG 60.510 48.000 0.00 0.00 0.00 3.69
159 160 5.069251 CAGATACTTTAGGGGAACTGATCGT 59.931 44.000 0.00 0.00 0.00 3.73
160 161 3.611766 ACTTTAGGGGAACTGATCGTG 57.388 47.619 0.00 0.00 0.00 4.35
161 162 3.170717 ACTTTAGGGGAACTGATCGTGA 58.829 45.455 0.00 0.00 0.00 4.35
162 163 3.056035 ACTTTAGGGGAACTGATCGTGAC 60.056 47.826 0.00 0.00 0.00 3.67
163 164 2.526888 TAGGGGAACTGATCGTGACT 57.473 50.000 0.00 0.00 0.00 3.41
164 165 1.187087 AGGGGAACTGATCGTGACTC 58.813 55.000 0.00 0.00 0.00 3.36
165 166 0.895530 GGGGAACTGATCGTGACTCA 59.104 55.000 0.00 0.00 0.00 3.41
166 167 1.404315 GGGGAACTGATCGTGACTCAC 60.404 57.143 0.00 0.00 0.00 3.51
167 168 1.272490 GGGAACTGATCGTGACTCACA 59.728 52.381 9.84 0.00 33.40 3.58
168 169 2.288825 GGGAACTGATCGTGACTCACAA 60.289 50.000 9.84 0.00 33.40 3.33
169 170 2.989840 GGAACTGATCGTGACTCACAAG 59.010 50.000 9.84 3.88 33.40 3.16
170 171 3.553096 GGAACTGATCGTGACTCACAAGT 60.553 47.826 9.84 4.43 38.88 3.16
171 172 4.321008 GGAACTGATCGTGACTCACAAGTA 60.321 45.833 9.84 0.00 35.28 2.24
172 173 4.848562 ACTGATCGTGACTCACAAGTAA 57.151 40.909 9.84 0.00 35.28 2.24
173 174 4.799678 ACTGATCGTGACTCACAAGTAAG 58.200 43.478 9.84 2.94 35.28 2.34
174 175 4.278669 ACTGATCGTGACTCACAAGTAAGT 59.721 41.667 9.84 3.49 35.28 2.24
175 176 5.472478 ACTGATCGTGACTCACAAGTAAGTA 59.528 40.000 9.84 0.00 35.28 2.24
176 177 6.151312 ACTGATCGTGACTCACAAGTAAGTAT 59.849 38.462 9.84 0.00 35.28 2.12
177 178 6.920817 TGATCGTGACTCACAAGTAAGTATT 58.079 36.000 9.84 0.00 35.28 1.89
178 179 7.375834 TGATCGTGACTCACAAGTAAGTATTT 58.624 34.615 9.84 0.00 35.28 1.40
179 180 7.541091 TGATCGTGACTCACAAGTAAGTATTTC 59.459 37.037 9.84 0.00 35.28 2.17
180 181 6.154445 TCGTGACTCACAAGTAAGTATTTCC 58.846 40.000 9.84 0.00 35.28 3.13
181 182 5.924254 CGTGACTCACAAGTAAGTATTTCCA 59.076 40.000 9.84 0.00 35.28 3.53
182 183 6.422701 CGTGACTCACAAGTAAGTATTTCCAA 59.577 38.462 9.84 0.00 35.28 3.53
183 184 7.359264 CGTGACTCACAAGTAAGTATTTCCAAG 60.359 40.741 9.84 0.00 35.28 3.61
184 185 7.441458 GTGACTCACAAGTAAGTATTTCCAAGT 59.559 37.037 4.17 0.00 35.28 3.16
185 186 8.644216 TGACTCACAAGTAAGTATTTCCAAGTA 58.356 33.333 0.00 0.00 35.28 2.24
186 187 9.654663 GACTCACAAGTAAGTATTTCCAAGTAT 57.345 33.333 0.00 0.00 35.28 2.12
249 250 9.157104 GATTTTCTAGTAGTTTCTCCAAAGAGG 57.843 37.037 0.00 0.00 40.83 3.69
285 286 6.385649 TTGTGAAAGTTGATAGTCAAACCC 57.614 37.500 0.00 0.00 38.22 4.11
286 287 5.441500 TGTGAAAGTTGATAGTCAAACCCA 58.558 37.500 0.00 0.00 38.22 4.51
287 288 5.888724 TGTGAAAGTTGATAGTCAAACCCAA 59.111 36.000 0.00 0.00 38.22 4.12
306 2995 9.737844 AAACCCAATATTTATTCAAAAGCACAT 57.262 25.926 0.00 0.00 0.00 3.21
389 3078 9.106070 TCATCAGTATATTGCAGCATATTCATC 57.894 33.333 0.00 0.00 0.00 2.92
397 3087 3.316029 TGCAGCATATTCATCCCTTTTCG 59.684 43.478 0.00 0.00 0.00 3.46
414 3104 9.627123 TCCCTTTTCGAAATAATCATCTAACAT 57.373 29.630 12.12 0.00 0.00 2.71
425 3115 3.323775 TCATCTAACATCCCCCTTACCC 58.676 50.000 0.00 0.00 0.00 3.69
432 3122 2.065799 CATCCCCCTTACCCAAGCTAT 58.934 52.381 0.00 0.00 0.00 2.97
460 3150 3.146218 GGGGGCCAAATATGCATCA 57.854 52.632 0.19 0.00 0.00 3.07
479 3169 6.138761 GCATCATAATGAGACGTTCCAATTC 58.861 40.000 0.00 0.00 34.61 2.17
485 3175 3.081061 TGAGACGTTCCAATTCCCATTG 58.919 45.455 0.00 0.00 39.79 2.82
505 3195 2.349755 GGCGCCCAAGGACACTAA 59.650 61.111 18.11 0.00 0.00 2.24
506 3196 1.302993 GGCGCCCAAGGACACTAAA 60.303 57.895 18.11 0.00 0.00 1.85
510 3200 1.950909 CGCCCAAGGACACTAAAAACA 59.049 47.619 0.00 0.00 0.00 2.83
511 3201 2.556622 CGCCCAAGGACACTAAAAACAT 59.443 45.455 0.00 0.00 0.00 2.71
538 3228 1.303309 GTGCAGACAGTGAGCAAGTT 58.697 50.000 10.31 0.00 40.35 2.66
549 3239 2.612212 GTGAGCAAGTTCGGAAACTCAA 59.388 45.455 12.65 0.62 45.07 3.02
552 3242 3.214328 AGCAAGTTCGGAAACTCAATGT 58.786 40.909 0.00 0.00 45.07 2.71
563 3253 5.068460 CGGAAACTCAATGTAGAGAGGAGAT 59.932 44.000 0.00 0.00 38.98 2.75
630 3328 5.106118 GGAAACTGAAAGCCCTAGTTGAATC 60.106 44.000 0.00 0.00 37.60 2.52
645 3343 4.458295 AGTTGAATCTCATGCTTGACCTTG 59.542 41.667 0.00 0.00 0.00 3.61
665 3363 7.584987 ACCTTGTGAATCGACTTCTAAAATTG 58.415 34.615 0.00 0.00 34.75 2.32
670 3368 6.148811 GTGAATCGACTTCTAAAATTGGGACA 59.851 38.462 0.00 0.00 34.75 4.02
671 3369 6.712998 TGAATCGACTTCTAAAATTGGGACAA 59.287 34.615 0.00 0.00 38.01 3.18
672 3370 7.094805 TGAATCGACTTCTAAAATTGGGACAAG 60.095 37.037 0.00 0.00 38.01 3.16
684 3382 1.271707 TGGGACAAGAAACCGATTCCC 60.272 52.381 0.00 0.00 42.80 3.97
686 3384 2.510613 GGACAAGAAACCGATTCCCAA 58.489 47.619 0.00 0.00 38.94 4.12
687 3385 3.089284 GGACAAGAAACCGATTCCCAAT 58.911 45.455 0.00 0.00 38.94 3.16
689 3387 4.887655 GGACAAGAAACCGATTCCCAATAT 59.112 41.667 0.00 0.00 38.94 1.28
690 3388 5.359860 GGACAAGAAACCGATTCCCAATATT 59.640 40.000 0.00 0.00 38.94 1.28
692 3390 7.255139 GGACAAGAAACCGATTCCCAATATTAG 60.255 40.741 0.00 0.00 38.94 1.73
693 3391 6.039382 ACAAGAAACCGATTCCCAATATTAGC 59.961 38.462 0.00 0.00 38.94 3.09
694 3392 5.690865 AGAAACCGATTCCCAATATTAGCA 58.309 37.500 0.00 0.00 38.94 3.49
703 3432 9.214957 CGATTCCCAATATTAGCACTATTAACA 57.785 33.333 0.00 0.00 0.00 2.41
705 3434 9.860650 ATTCCCAATATTAGCACTATTAACACA 57.139 29.630 0.00 0.00 0.00 3.72
739 3468 5.689383 TTTATTTGTGACTCAGGCTGTTC 57.311 39.130 15.27 12.57 0.00 3.18
742 3471 0.032130 TGTGACTCAGGCTGTTCGAC 59.968 55.000 15.27 12.41 0.00 4.20
817 3557 1.042229 GATTAATGGGCATGGCAGCA 58.958 50.000 22.06 11.14 35.83 4.41
820 3560 1.273759 TAATGGGCATGGCAGCAAAA 58.726 45.000 22.06 0.79 35.83 2.44
845 3585 0.038892 GATTAATGCGCATGGGCCAG 60.039 55.000 29.42 5.44 36.38 4.85
891 3631 4.410400 CTGGGCCGGTTGGAGGAC 62.410 72.222 3.48 0.00 37.49 3.85
918 3659 1.409064 CTGCCGCTACCATCTTGTCTA 59.591 52.381 0.00 0.00 0.00 2.59
961 3707 3.702048 CCTCCACCTCCGGCGAAA 61.702 66.667 9.30 0.00 0.00 3.46
969 3715 0.530870 CCTCCGGCGAAATTCTCTCC 60.531 60.000 9.30 0.00 0.00 3.71
972 3718 1.002659 TCCGGCGAAATTCTCTCCAAA 59.997 47.619 9.30 0.00 0.00 3.28
998 3744 0.037734 AAAACCTCCGGCGAAATCCT 59.962 50.000 9.30 0.00 0.00 3.24
1074 3820 0.116342 TGGAGTCCAGCCCTGAAGTA 59.884 55.000 8.12 0.00 0.00 2.24
1228 3974 1.008538 GTTCCACGACGTGTACGGT 60.009 57.895 25.18 0.00 44.95 4.83
1331 4186 2.548057 ACACCACACGCTTCAGTTTATG 59.452 45.455 0.00 0.00 0.00 1.90
1355 4210 1.610522 GAAAATGTGTGCAGGCAGTCT 59.389 47.619 0.00 0.00 0.00 3.24
1410 4266 4.607955 TCAGCGATTCAGTACTTATTCCG 58.392 43.478 0.00 0.00 0.00 4.30
1491 4347 3.181466 GGTGGGCAATTTCTGTTTCTTGT 60.181 43.478 0.00 0.00 0.00 3.16
1492 4348 4.038642 GGTGGGCAATTTCTGTTTCTTGTA 59.961 41.667 0.00 0.00 0.00 2.41
1493 4349 4.982295 GTGGGCAATTTCTGTTTCTTGTAC 59.018 41.667 0.00 0.00 0.00 2.90
1494 4350 4.892934 TGGGCAATTTCTGTTTCTTGTACT 59.107 37.500 0.00 0.00 0.00 2.73
1495 4351 5.009610 TGGGCAATTTCTGTTTCTTGTACTC 59.990 40.000 0.00 0.00 0.00 2.59
1496 4352 5.461526 GGCAATTTCTGTTTCTTGTACTCC 58.538 41.667 0.00 0.00 0.00 3.85
1497 4353 5.461526 GCAATTTCTGTTTCTTGTACTCCC 58.538 41.667 0.00 0.00 0.00 4.30
1498 4354 5.241728 GCAATTTCTGTTTCTTGTACTCCCT 59.758 40.000 0.00 0.00 0.00 4.20
1499 4355 6.568653 GCAATTTCTGTTTCTTGTACTCCCTC 60.569 42.308 0.00 0.00 0.00 4.30
1500 4356 4.618920 TTCTGTTTCTTGTACTCCCTCC 57.381 45.455 0.00 0.00 0.00 4.30
1501 4357 2.561419 TCTGTTTCTTGTACTCCCTCCG 59.439 50.000 0.00 0.00 0.00 4.63
1502 4358 2.299297 CTGTTTCTTGTACTCCCTCCGT 59.701 50.000 0.00 0.00 0.00 4.69
1503 4359 2.701951 TGTTTCTTGTACTCCCTCCGTT 59.298 45.455 0.00 0.00 0.00 4.44
1504 4360 3.243975 TGTTTCTTGTACTCCCTCCGTTC 60.244 47.826 0.00 0.00 0.00 3.95
1505 4361 1.553706 TCTTGTACTCCCTCCGTTCC 58.446 55.000 0.00 0.00 0.00 3.62
1506 4362 1.076677 TCTTGTACTCCCTCCGTTCCT 59.923 52.381 0.00 0.00 0.00 3.36
1507 4363 2.309755 TCTTGTACTCCCTCCGTTCCTA 59.690 50.000 0.00 0.00 0.00 2.94
1508 4364 2.905415 TGTACTCCCTCCGTTCCTAA 57.095 50.000 0.00 0.00 0.00 2.69
1509 4365 3.173953 TGTACTCCCTCCGTTCCTAAA 57.826 47.619 0.00 0.00 0.00 1.85
1510 4366 3.716431 TGTACTCCCTCCGTTCCTAAAT 58.284 45.455 0.00 0.00 0.00 1.40
1511 4367 4.870636 TGTACTCCCTCCGTTCCTAAATA 58.129 43.478 0.00 0.00 0.00 1.40
1512 4368 5.461327 TGTACTCCCTCCGTTCCTAAATAT 58.539 41.667 0.00 0.00 0.00 1.28
1513 4369 6.613699 TGTACTCCCTCCGTTCCTAAATATA 58.386 40.000 0.00 0.00 0.00 0.86
1514 4370 7.068702 TGTACTCCCTCCGTTCCTAAATATAA 58.931 38.462 0.00 0.00 0.00 0.98
1515 4371 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
1516 4372 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
1517 4373 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
1518 4374 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
1519 4375 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
1520 4376 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
1521 4377 7.441458 CCCTCCGTTCCTAAATATAAGTCTTTG 59.559 40.741 0.00 0.00 0.00 2.77
1522 4378 7.985752 CCTCCGTTCCTAAATATAAGTCTTTGT 59.014 37.037 0.00 0.00 0.00 2.83
1544 4400 9.952030 TTTGTATAGATTTCACTATGAACCACA 57.048 29.630 0.00 0.00 35.89 4.17
1548 4404 8.818141 ATAGATTTCACTATGAACCACATACG 57.182 34.615 0.00 0.00 35.89 3.06
1549 4405 6.049149 AGATTTCACTATGAACCACATACGG 58.951 40.000 0.00 0.00 35.89 4.02
1550 4406 5.408880 TTTCACTATGAACCACATACGGA 57.591 39.130 0.00 0.00 35.89 4.69
1551 4407 5.607939 TTCACTATGAACCACATACGGAT 57.392 39.130 0.00 0.00 40.07 4.18
1552 4408 4.944048 TCACTATGAACCACATACGGATG 58.056 43.478 5.94 5.94 40.07 3.51
1553 4409 5.105106 TTCACTATGAACCACATACGGATGT 60.105 40.000 7.68 7.68 37.89 3.06
1554 4410 5.595133 TCACTATGAACCACATACGGATGTA 59.405 40.000 14.23 0.00 44.82 2.29
1555 4411 6.266786 TCACTATGAACCACATACGGATGTAT 59.733 38.462 14.23 5.54 44.82 2.29
1556 4412 7.449086 TCACTATGAACCACATACGGATGTATA 59.551 37.037 14.23 6.48 44.82 1.47
1557 4413 8.251026 CACTATGAACCACATACGGATGTATAT 58.749 37.037 14.23 1.68 44.82 0.86
1558 4414 9.470399 ACTATGAACCACATACGGATGTATATA 57.530 33.333 14.23 7.10 44.82 0.86
1559 4415 9.952188 CTATGAACCACATACGGATGTATATAG 57.048 37.037 14.23 12.28 44.82 1.31
1560 4416 8.589701 ATGAACCACATACGGATGTATATAGA 57.410 34.615 14.23 0.00 44.82 1.98
1561 4417 8.589701 TGAACCACATACGGATGTATATAGAT 57.410 34.615 14.23 0.00 44.82 1.98
1562 4418 8.466798 TGAACCACATACGGATGTATATAGATG 58.533 37.037 14.23 0.00 44.82 2.90
1563 4419 6.806751 ACCACATACGGATGTATATAGATGC 58.193 40.000 14.23 0.00 44.82 3.91
1564 4420 6.379988 ACCACATACGGATGTATATAGATGCA 59.620 38.462 14.23 0.00 44.82 3.96
1565 4421 7.069950 ACCACATACGGATGTATATAGATGCAT 59.930 37.037 14.23 0.00 44.82 3.96
1566 4422 7.928167 CCACATACGGATGTATATAGATGCATT 59.072 37.037 14.23 1.23 44.82 3.56
1567 4423 9.317936 CACATACGGATGTATATAGATGCATTT 57.682 33.333 14.23 0.00 44.82 2.32
1568 4424 9.890629 ACATACGGATGTATATAGATGCATTTT 57.109 29.630 12.79 0.00 44.77 1.82
1572 4428 9.809096 ACGGATGTATATAGATGCATTTTAGAG 57.191 33.333 11.19 0.00 38.38 2.43
1573 4429 9.809096 CGGATGTATATAGATGCATTTTAGAGT 57.191 33.333 11.19 0.00 38.38 3.24
1583 4439 8.430801 AGATGCATTTTAGAGTGTAGATTCAC 57.569 34.615 0.00 0.00 38.46 3.18
1593 4449 5.078411 AGTGTAGATTCACTCAATTCGCT 57.922 39.130 0.00 0.00 44.07 4.93
1594 4450 5.105752 AGTGTAGATTCACTCAATTCGCTC 58.894 41.667 0.00 0.00 44.07 5.03
1595 4451 4.268884 GTGTAGATTCACTCAATTCGCTCC 59.731 45.833 0.00 0.00 35.68 4.70
1596 4452 2.544685 AGATTCACTCAATTCGCTCCG 58.455 47.619 0.00 0.00 0.00 4.63
1597 4453 2.093973 AGATTCACTCAATTCGCTCCGT 60.094 45.455 0.00 0.00 0.00 4.69
1598 4454 3.130516 AGATTCACTCAATTCGCTCCGTA 59.869 43.478 0.00 0.00 0.00 4.02
1599 4455 3.520290 TTCACTCAATTCGCTCCGTAT 57.480 42.857 0.00 0.00 0.00 3.06
1600 4456 2.809446 TCACTCAATTCGCTCCGTATG 58.191 47.619 0.00 0.00 0.00 2.39
1601 4457 2.165641 TCACTCAATTCGCTCCGTATGT 59.834 45.455 0.00 0.00 0.00 2.29
1602 4458 3.379057 TCACTCAATTCGCTCCGTATGTA 59.621 43.478 0.00 0.00 0.00 2.29
1603 4459 3.731216 CACTCAATTCGCTCCGTATGTAG 59.269 47.826 0.00 0.00 0.00 2.74
1604 4460 3.380637 ACTCAATTCGCTCCGTATGTAGT 59.619 43.478 0.00 0.00 0.00 2.73
1605 4461 3.961182 TCAATTCGCTCCGTATGTAGTC 58.039 45.455 0.00 0.00 0.00 2.59
1606 4462 3.050619 CAATTCGCTCCGTATGTAGTCC 58.949 50.000 0.00 0.00 0.00 3.85
1607 4463 1.753930 TTCGCTCCGTATGTAGTCCA 58.246 50.000 0.00 0.00 0.00 4.02
1608 4464 1.977056 TCGCTCCGTATGTAGTCCAT 58.023 50.000 0.00 0.00 37.58 3.41
1609 4465 3.130280 TCGCTCCGTATGTAGTCCATA 57.870 47.619 0.00 0.00 34.86 2.74
1610 4466 3.072211 TCGCTCCGTATGTAGTCCATAG 58.928 50.000 0.00 0.00 36.71 2.23
1611 4467 2.812591 CGCTCCGTATGTAGTCCATAGT 59.187 50.000 0.00 0.00 36.71 2.12
1612 4468 3.999001 CGCTCCGTATGTAGTCCATAGTA 59.001 47.826 0.00 0.00 36.71 1.82
1613 4469 4.093115 CGCTCCGTATGTAGTCCATAGTAG 59.907 50.000 0.00 0.00 36.71 2.57
1614 4470 5.243981 GCTCCGTATGTAGTCCATAGTAGA 58.756 45.833 0.00 0.00 36.71 2.59
1615 4471 5.704515 GCTCCGTATGTAGTCCATAGTAGAA 59.295 44.000 0.00 0.00 36.71 2.10
1616 4472 6.374894 GCTCCGTATGTAGTCCATAGTAGAAT 59.625 42.308 0.00 0.00 36.71 2.40
1617 4473 7.414319 GCTCCGTATGTAGTCCATAGTAGAATC 60.414 44.444 0.00 0.00 36.71 2.52
1618 4474 7.687388 TCCGTATGTAGTCCATAGTAGAATCT 58.313 38.462 0.00 0.00 36.71 2.40
1619 4475 7.823310 TCCGTATGTAGTCCATAGTAGAATCTC 59.177 40.741 0.00 0.00 36.71 2.75
1620 4476 7.825270 CCGTATGTAGTCCATAGTAGAATCTCT 59.175 40.741 0.00 0.00 36.71 3.10
1621 4477 9.872721 CGTATGTAGTCCATAGTAGAATCTCTA 57.127 37.037 0.00 0.00 36.71 2.43
1646 4502 8.943909 ACAAAGACTTATATTTAGGAACCGAG 57.056 34.615 0.00 0.00 0.00 4.63
1647 4503 7.985752 ACAAAGACTTATATTTAGGAACCGAGG 59.014 37.037 0.00 0.00 0.00 4.63
1648 4504 6.667558 AGACTTATATTTAGGAACCGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
1649 4505 6.379579 AGACTTATATTTAGGAACCGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
1673 4542 7.496263 GGAGTAGATCGCATGACTATATCAGTA 59.504 40.741 0.00 0.00 41.91 2.74
1732 4601 3.496870 GGCCCCTTATGGTCTTACATCAG 60.497 52.174 0.00 0.00 32.39 2.90
1735 4604 4.444876 CCCCTTATGGTCTTACATCAGGTG 60.445 50.000 5.88 0.00 39.51 4.00
1744 4613 4.941263 GTCTTACATCAGGTGGCACATTTA 59.059 41.667 20.82 3.01 44.52 1.40
1762 4631 9.023967 GCACATTTAACATCAACATATTCCTTC 57.976 33.333 0.00 0.00 0.00 3.46
1827 4696 4.970662 TGACTCATTAGGAAATGCTTGC 57.029 40.909 0.00 0.00 41.96 4.01
1869 4738 1.987770 GCTGTTGGAAATGCATGTTCG 59.012 47.619 0.00 0.00 0.00 3.95
1882 4751 4.183865 TGCATGTTCGGAAATCAGTCTAG 58.816 43.478 0.00 0.00 0.00 2.43
1888 4757 5.479375 TGTTCGGAAATCAGTCTAGGTAAGT 59.521 40.000 0.00 0.00 0.00 2.24
1891 4760 7.330900 TCGGAAATCAGTCTAGGTAAGTAAG 57.669 40.000 0.00 0.00 0.00 2.34
1924 4794 3.802866 TGTGCTTCTGTTGTGTGTGATA 58.197 40.909 0.00 0.00 0.00 2.15
1952 4822 7.561021 TTCTGTCTGTTGCACAAGTAATTAA 57.439 32.000 0.00 0.00 0.00 1.40
1967 4837 5.147767 AGTAATTAAGGGGGCATTGATTCC 58.852 41.667 0.00 0.00 0.00 3.01
1978 4848 4.520492 GGGCATTGATTCCATGTAGGTTAG 59.480 45.833 0.00 0.00 39.02 2.34
1989 4859 6.046593 TCCATGTAGGTTAGTAGAATTTGCG 58.953 40.000 0.00 0.00 39.02 4.85
2151 5022 7.928706 CCGTATGAGGTTCTTATCTCTTGATTT 59.071 37.037 0.00 0.00 34.32 2.17
2274 5146 1.085091 CATGGCAAGAGCTCACTCAC 58.915 55.000 17.77 2.49 46.09 3.51
2380 5252 5.059161 TGATCATTACAGCAGCCAATAGAC 58.941 41.667 0.00 0.00 0.00 2.59
2391 5263 2.092753 AGCCAATAGACTGATGTGTGGG 60.093 50.000 0.00 0.00 0.00 4.61
2396 5268 2.795231 AGACTGATGTGTGGGGAATG 57.205 50.000 0.00 0.00 0.00 2.67
2406 5278 8.006298 TGATGTGTGGGGAATGAATAAATAAC 57.994 34.615 0.00 0.00 0.00 1.89
2483 5355 6.313411 TGTTTCTTTCAGTTCAAATGCAAAGG 59.687 34.615 0.00 0.00 0.00 3.11
2540 5415 7.753309 TTTTTAAAAGGCAGTATGAGCACTA 57.247 32.000 0.14 0.00 39.69 2.74
2542 5417 7.938140 TTTAAAAGGCAGTATGAGCACTAAT 57.062 32.000 0.00 0.00 39.69 1.73
2543 5418 7.938140 TTAAAAGGCAGTATGAGCACTAATT 57.062 32.000 0.00 0.00 39.69 1.40
2544 5419 9.456147 TTTAAAAGGCAGTATGAGCACTAATTA 57.544 29.630 0.00 0.00 39.69 1.40
2545 5420 7.559590 AAAAGGCAGTATGAGCACTAATTAG 57.440 36.000 11.05 11.05 39.69 1.73
2561 5436 9.896263 GCACTAATTAGTATCTAACAGACTACC 57.104 37.037 17.62 0.00 34.13 3.18
2714 5593 5.305139 ACGTTTAACTTTCATACATGGCC 57.695 39.130 0.00 0.00 0.00 5.36
2729 5608 4.002797 GCCCTCGTTTGCCAGATT 57.997 55.556 0.00 0.00 0.00 2.40
2750 5629 3.664107 TGGTGACATTGTAGAAGAGCAC 58.336 45.455 0.00 0.00 33.40 4.40
2771 5650 5.446709 CACTATGTTTGTTTCACAGCTCTG 58.553 41.667 0.00 0.00 0.00 3.35
2775 5654 6.882610 ATGTTTGTTTCACAGCTCTGAATA 57.117 33.333 5.18 0.00 30.19 1.75
2796 5675 7.719633 TGAATAGTAAGTCTTTTTGCTGGTCTT 59.280 33.333 0.00 0.00 0.00 3.01
2810 5689 6.048732 TGCTGGTCTTGATGTAATACTCAA 57.951 37.500 0.00 0.00 0.00 3.02
2972 5851 5.449999 GGCCAGTGTTATATTTGCTTGTACC 60.450 44.000 0.00 0.00 0.00 3.34
2981 5860 0.179015 TTGCTTGTACCGGCTTGGAA 60.179 50.000 0.00 0.00 42.00 3.53
2982 5861 0.887387 TGCTTGTACCGGCTTGGAAC 60.887 55.000 0.00 0.00 42.00 3.62
2983 5862 0.605589 GCTTGTACCGGCTTGGAACT 60.606 55.000 0.00 0.00 42.00 3.01
2984 5863 1.156736 CTTGTACCGGCTTGGAACTG 58.843 55.000 0.00 0.00 42.00 3.16
2985 5864 0.470766 TTGTACCGGCTTGGAACTGT 59.529 50.000 0.00 0.00 42.00 3.55
3114 6061 7.766283 TGTCAATTTGTTTGATGACTTGTACA 58.234 30.769 0.00 0.00 45.77 2.90
3115 6062 8.412456 TGTCAATTTGTTTGATGACTTGTACAT 58.588 29.630 0.00 0.00 45.77 2.29
3117 6064 9.462174 TCAATTTGTTTGATGACTTGTACATTC 57.538 29.630 0.00 0.00 39.44 2.67
3118 6065 9.467258 CAATTTGTTTGATGACTTGTACATTCT 57.533 29.630 0.00 0.00 37.53 2.40
3121 6068 8.902540 TTGTTTGATGACTTGTACATTCTAGT 57.097 30.769 0.00 0.00 0.00 2.57
3122 6069 8.534333 TGTTTGATGACTTGTACATTCTAGTC 57.466 34.615 15.54 15.54 39.38 2.59
3198 6145 5.292834 GGCCTTAAATAGAACAGGTACGAAC 59.707 44.000 0.00 0.00 0.00 3.95
3199 6146 6.104665 GCCTTAAATAGAACAGGTACGAACT 58.895 40.000 0.00 0.00 0.00 3.01
3200 6147 7.260603 GCCTTAAATAGAACAGGTACGAACTA 58.739 38.462 0.00 0.00 0.00 2.24
3201 6148 7.221645 GCCTTAAATAGAACAGGTACGAACTAC 59.778 40.741 0.00 0.00 0.00 2.73
3203 6150 6.500684 AAATAGAACAGGTACGAACTACGA 57.499 37.500 0.00 0.00 45.77 3.43
3204 6151 6.500684 AATAGAACAGGTACGAACTACGAA 57.499 37.500 0.00 0.00 45.77 3.85
3205 6152 4.416505 AGAACAGGTACGAACTACGAAG 57.583 45.455 0.00 0.00 45.77 3.79
3238 6185 5.334414 GCAGATTCAGTTACTGGTGTGAAAG 60.334 44.000 12.79 0.00 32.85 2.62
3256 6203 1.813513 AGGAGTCGTGCTTTTCATGG 58.186 50.000 0.00 0.00 32.54 3.66
3376 6323 5.361571 TGTGAATAATTGATGCTGGCAGATT 59.638 36.000 20.86 11.01 0.00 2.40
3411 6358 6.485313 AGTTCACCTGAAAAATCATTCGTGTA 59.515 34.615 0.00 0.00 35.58 2.90
3413 6360 5.088739 CACCTGAAAAATCATTCGTGTAGC 58.911 41.667 0.00 0.00 31.80 3.58
3418 6365 2.806288 AATCATTCGTGTAGCGTTGC 57.194 45.000 0.00 0.00 42.13 4.17
3439 6386 3.804518 TGCACTGCAGTTTAACATACG 57.195 42.857 18.94 3.41 33.32 3.06
3440 6387 2.095969 TGCACTGCAGTTTAACATACGC 60.096 45.455 18.94 14.60 33.32 4.42
3444 6391 2.601314 CTGCAGTTTAACATACGCGCTA 59.399 45.455 5.73 0.00 0.00 4.26
3446 6393 3.181528 TGCAGTTTAACATACGCGCTAAC 60.182 43.478 5.73 0.14 0.00 2.34
3475 6424 4.040095 GGGATATAAGCTAGTTTCACGGGT 59.960 45.833 0.00 0.00 0.00 5.28
3477 6426 2.088950 TAAGCTAGTTTCACGGGTGC 57.911 50.000 0.00 0.00 0.00 5.01
3490 6439 3.702548 TCACGGGTGCTATACAGTGTTAT 59.297 43.478 0.00 0.00 39.18 1.89
3630 6579 4.338400 TGATAACACGGTATCCAGTCTGAG 59.662 45.833 0.00 0.00 30.62 3.35
3631 6580 2.509166 ACACGGTATCCAGTCTGAGA 57.491 50.000 0.00 0.00 0.00 3.27
3632 6581 2.093106 ACACGGTATCCAGTCTGAGAC 58.907 52.381 3.98 3.98 0.00 3.36
3748 6705 2.125912 ACCACCCAGCCTGGAGAT 59.874 61.111 13.74 0.00 40.96 2.75
3774 6731 1.215673 TCCCACCAAAACAGCCTACAA 59.784 47.619 0.00 0.00 0.00 2.41
3833 6791 2.356069 GCCTTGGCTTGATAACAGTAGC 59.644 50.000 4.11 0.00 31.40 3.58
3873 6831 5.470098 ACATCTCTACAAGTCGCACAATTTT 59.530 36.000 0.00 0.00 0.00 1.82
3877 6835 4.994852 TCTACAAGTCGCACAATTTTAGCT 59.005 37.500 0.00 0.00 0.00 3.32
3888 6882 9.116067 TCGCACAATTTTAGCTATACCTTTTAT 57.884 29.630 0.00 0.00 0.00 1.40
3943 6937 5.645497 GCAAATATATCTCCCCTGCTTACAG 59.355 44.000 0.00 0.00 44.05 2.74
3955 6949 5.452776 CCCCTGCTTACAGTACAATAATCGA 60.453 44.000 0.00 0.00 42.81 3.59
3969 6963 6.133392 ACAATAATCGACGTTCTTTGTGTTG 58.867 36.000 0.00 0.00 0.00 3.33
3997 6991 2.470983 TGCCGTGAATGTCATCAAGA 57.529 45.000 0.00 0.00 31.49 3.02
4018 7012 1.805869 GATGATGCAGAGGATTCCCG 58.194 55.000 0.00 0.00 37.58 5.14
4086 7080 2.519013 AGAGGTGCCATTTCTTTGGTC 58.481 47.619 0.00 0.00 39.11 4.02
4100 7094 0.108963 TTGGTCGATTGTTTCCGGGT 59.891 50.000 0.00 0.00 0.00 5.28
4183 7177 5.154932 CGTAAGAACTTCTGTCTGGTACTG 58.845 45.833 0.00 0.00 43.02 2.74
4253 7250 7.838771 ACCTCTTAATTGGTAACGTGAATAC 57.161 36.000 0.00 0.00 42.51 1.89
4265 7262 7.654520 TGGTAACGTGAATACTGCTTATATTCC 59.345 37.037 0.00 0.00 37.54 3.01
4291 7288 6.166279 GTGATATGTATGGGTCGATCACATT 58.834 40.000 5.55 0.00 41.69 2.71
4374 7371 1.441311 CCATATGGCCCCGTTTTGC 59.559 57.895 9.29 0.00 0.00 3.68
4375 7372 1.326213 CCATATGGCCCCGTTTTGCA 61.326 55.000 9.29 0.00 0.00 4.08
4376 7373 0.102844 CATATGGCCCCGTTTTGCAG 59.897 55.000 0.00 0.00 0.00 4.41
4380 7377 4.662961 GCCCCGTTTTGCAGCCAC 62.663 66.667 0.00 0.00 0.00 5.01
4381 7378 2.912025 CCCCGTTTTGCAGCCACT 60.912 61.111 0.00 0.00 0.00 4.00
4382 7379 2.498056 CCCCGTTTTGCAGCCACTT 61.498 57.895 0.00 0.00 0.00 3.16
4384 7381 1.437160 CCGTTTTGCAGCCACTTGT 59.563 52.632 0.00 0.00 0.00 3.16
4385 7382 0.871163 CCGTTTTGCAGCCACTTGTG 60.871 55.000 0.00 0.00 0.00 3.33
4386 7383 1.481819 CGTTTTGCAGCCACTTGTGC 61.482 55.000 0.00 0.00 40.29 4.57
4391 7388 2.492773 GCAGCCACTTGTGCACCTT 61.493 57.895 15.69 0.00 39.62 3.50
4403 7400 7.041721 CACTTGTGCACCTTCACTAGAATATA 58.958 38.462 15.69 0.00 40.55 0.86
4404 7401 7.549134 CACTTGTGCACCTTCACTAGAATATAA 59.451 37.037 15.69 0.00 40.55 0.98
4405 7402 7.766278 ACTTGTGCACCTTCACTAGAATATAAG 59.234 37.037 15.69 7.56 40.55 1.73
4406 7403 7.418337 TGTGCACCTTCACTAGAATATAAGA 57.582 36.000 15.69 0.00 37.81 2.10
4407 7404 7.492524 TGTGCACCTTCACTAGAATATAAGAG 58.507 38.462 15.69 0.00 37.81 2.85
4408 7405 6.422400 GTGCACCTTCACTAGAATATAAGAGC 59.578 42.308 5.22 1.92 34.29 4.09
4409 7406 6.098266 TGCACCTTCACTAGAATATAAGAGCA 59.902 38.462 0.00 4.16 32.31 4.26
4410 7407 7.158021 GCACCTTCACTAGAATATAAGAGCAT 58.842 38.462 0.00 0.00 32.31 3.79
4411 7408 7.330700 GCACCTTCACTAGAATATAAGAGCATC 59.669 40.741 0.00 0.00 32.31 3.91
4412 7409 8.363390 CACCTTCACTAGAATATAAGAGCATCA 58.637 37.037 0.00 0.00 32.37 3.07
4413 7410 8.928448 ACCTTCACTAGAATATAAGAGCATCAA 58.072 33.333 0.00 0.00 32.37 2.57
4414 7411 9.202273 CCTTCACTAGAATATAAGAGCATCAAC 57.798 37.037 0.00 0.00 32.37 3.18
4415 7412 9.755804 CTTCACTAGAATATAAGAGCATCAACA 57.244 33.333 0.00 0.00 32.37 3.33
4417 7414 9.920133 TCACTAGAATATAAGAGCATCAACATC 57.080 33.333 0.00 0.00 37.82 3.06
4424 7421 2.824041 GCATCAACATCCGGGCGT 60.824 61.111 0.00 0.00 0.00 5.68
4426 7423 2.180204 CATCAACATCCGGGCGTCC 61.180 63.158 0.00 0.00 0.00 4.79
4432 7429 4.419921 ATCCGGGCGTCCCAAACC 62.420 66.667 14.17 0.00 45.83 3.27
4440 7437 2.355115 GTCCCAAACCCGCCTCAT 59.645 61.111 0.00 0.00 0.00 2.90
4476 7473 1.708993 GCACCCCTCATATCCAGCCA 61.709 60.000 0.00 0.00 0.00 4.75
4479 7476 2.146998 ACCCCTCATATCCAGCCAAAT 58.853 47.619 0.00 0.00 0.00 2.32
4481 7478 3.925370 ACCCCTCATATCCAGCCAAATAT 59.075 43.478 0.00 0.00 0.00 1.28
4482 7479 4.264083 ACCCCTCATATCCAGCCAAATATG 60.264 45.833 4.29 4.29 37.25 1.78
4483 7480 4.018141 CCCCTCATATCCAGCCAAATATGA 60.018 45.833 10.41 10.41 40.71 2.15
4484 7481 5.517122 CCCCTCATATCCAGCCAAATATGAA 60.517 44.000 11.47 1.03 41.77 2.57
4486 7483 5.125097 CCTCATATCCAGCCAAATATGAAGC 59.875 44.000 11.47 0.00 41.77 3.86
4488 7485 1.024271 TCCAGCCAAATATGAAGCGC 58.976 50.000 0.00 0.00 0.00 5.92
4549 7548 0.107508 CATGCTGACCCATTCGACCT 60.108 55.000 0.00 0.00 0.00 3.85
4576 7576 0.031111 ATTCCTCCCCATCCACTCGA 60.031 55.000 0.00 0.00 0.00 4.04
4577 7577 0.031111 TTCCTCCCCATCCACTCGAT 60.031 55.000 0.00 0.00 0.00 3.59
4592 7592 2.844348 ACTCGATGGACCAAACCCTAAT 59.156 45.455 0.00 0.00 0.00 1.73
4609 7610 4.248859 CCTAATCACTTCACACTCCACTG 58.751 47.826 0.00 0.00 0.00 3.66
4616 7618 2.930562 ACACTCCACTGCCCTCCC 60.931 66.667 0.00 0.00 0.00 4.30
4621 7624 4.748798 CCACTGCCCTCCCCTCCT 62.749 72.222 0.00 0.00 0.00 3.69
4657 7660 1.745115 CCTCCAGCGATTTTCGGCA 60.745 57.895 0.00 0.00 40.84 5.69
4688 7691 2.728817 CGGGTAGCGGATCTGACC 59.271 66.667 5.48 4.71 0.00 4.02
4708 7711 2.284798 CTGACCAGTCCGGATCCGTG 62.285 65.000 31.22 22.48 38.63 4.94
4774 7777 4.087892 ATTGCACTCCGCCGCTCT 62.088 61.111 0.00 0.00 41.33 4.09
4819 7822 0.036952 CAGGTTCTGTCTGGCACGAT 60.037 55.000 0.00 0.00 0.00 3.73
4862 7865 3.934391 CTCGTGCCCTCGGTGGTTC 62.934 68.421 0.00 0.00 0.00 3.62
4871 7874 0.100682 CTCGGTGGTTCGATCATCGT 59.899 55.000 17.44 0.00 41.35 3.73
4881 7884 4.221422 ATCATCGTGGTCCCGGCG 62.221 66.667 0.00 0.00 0.00 6.46
4893 7896 2.749839 CCGGCGGCCAGAAAATCA 60.750 61.111 20.71 0.00 0.00 2.57
4930 7934 1.077285 TCGGGCGGACTATGAGTCA 60.077 57.895 8.77 0.00 46.79 3.41
4935 7939 0.179108 GCGGACTATGAGTCACACCC 60.179 60.000 8.77 0.00 46.79 4.61
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.884579 CACTCTTGTTCATGCCTGCTT 59.115 47.619 0.00 0.00 0.00 3.91
1 2 1.072806 TCACTCTTGTTCATGCCTGCT 59.927 47.619 0.00 0.00 0.00 4.24
2 3 1.527034 TCACTCTTGTTCATGCCTGC 58.473 50.000 0.00 0.00 0.00 4.85
3 4 3.607741 AGATCACTCTTGTTCATGCCTG 58.392 45.455 0.00 0.00 0.00 4.85
4 5 3.996921 AGATCACTCTTGTTCATGCCT 57.003 42.857 0.00 0.00 0.00 4.75
14 15 8.579850 TTAATATTGTTGGCAAGATCACTCTT 57.420 30.769 0.00 0.00 42.59 2.85
15 16 7.201767 GCTTAATATTGTTGGCAAGATCACTCT 60.202 37.037 0.00 0.00 35.71 3.24
16 17 6.914757 GCTTAATATTGTTGGCAAGATCACTC 59.085 38.462 0.00 0.00 35.71 3.51
17 18 6.377996 TGCTTAATATTGTTGGCAAGATCACT 59.622 34.615 0.00 0.00 35.71 3.41
18 19 6.563422 TGCTTAATATTGTTGGCAAGATCAC 58.437 36.000 0.00 0.00 35.71 3.06
19 20 6.772360 TGCTTAATATTGTTGGCAAGATCA 57.228 33.333 0.00 0.00 35.71 2.92
20 21 8.652810 AAATGCTTAATATTGTTGGCAAGATC 57.347 30.769 0.00 0.00 35.71 2.75
21 22 8.885722 CAAAATGCTTAATATTGTTGGCAAGAT 58.114 29.630 0.00 0.28 38.07 2.40
22 23 7.148440 GCAAAATGCTTAATATTGTTGGCAAGA 60.148 33.333 0.00 0.00 40.96 3.02
23 24 6.962678 GCAAAATGCTTAATATTGTTGGCAAG 59.037 34.615 0.00 0.00 40.96 4.01
24 25 6.128063 GGCAAAATGCTTAATATTGTTGGCAA 60.128 34.615 0.00 0.00 44.28 4.52
25 26 5.353678 GGCAAAATGCTTAATATTGTTGGCA 59.646 36.000 0.00 3.89 44.28 4.92
26 27 5.585844 AGGCAAAATGCTTAATATTGTTGGC 59.414 36.000 0.00 15.68 44.28 4.52
27 28 7.465989 CAAGGCAAAATGCTTAATATTGTTGG 58.534 34.615 0.00 0.00 44.28 3.77
28 29 6.962678 GCAAGGCAAAATGCTTAATATTGTTG 59.037 34.615 0.00 0.00 44.28 3.33
29 30 6.093909 GGCAAGGCAAAATGCTTAATATTGTT 59.906 34.615 0.00 0.00 44.28 2.83
30 31 5.585844 GGCAAGGCAAAATGCTTAATATTGT 59.414 36.000 0.00 0.00 44.28 2.71
31 32 5.585445 TGGCAAGGCAAAATGCTTAATATTG 59.415 36.000 0.00 0.97 44.28 1.90
32 33 5.743117 TGGCAAGGCAAAATGCTTAATATT 58.257 33.333 2.00 0.00 44.28 1.28
33 34 5.356291 TGGCAAGGCAAAATGCTTAATAT 57.644 34.783 2.00 0.00 44.28 1.28
34 35 4.757594 CTGGCAAGGCAAAATGCTTAATA 58.242 39.130 2.00 0.00 44.28 0.98
35 36 3.602483 CTGGCAAGGCAAAATGCTTAAT 58.398 40.909 2.00 0.00 44.28 1.40
36 37 2.871236 GCTGGCAAGGCAAAATGCTTAA 60.871 45.455 2.00 0.00 44.28 1.85
37 38 1.338011 GCTGGCAAGGCAAAATGCTTA 60.338 47.619 2.00 0.00 44.28 3.09
38 39 0.604511 GCTGGCAAGGCAAAATGCTT 60.605 50.000 2.00 0.00 44.28 3.91
39 40 1.004200 GCTGGCAAGGCAAAATGCT 60.004 52.632 2.00 0.00 44.28 3.79
40 41 1.301874 TGCTGGCAAGGCAAAATGC 60.302 52.632 0.00 0.00 44.08 3.56
41 42 0.249953 TGTGCTGGCAAGGCAAAATG 60.250 50.000 2.71 0.00 41.54 2.32
42 43 0.249996 GTGTGCTGGCAAGGCAAAAT 60.250 50.000 2.71 0.00 41.54 1.82
43 44 1.143620 GTGTGCTGGCAAGGCAAAA 59.856 52.632 2.71 0.00 41.54 2.44
44 45 1.401318 ATGTGTGCTGGCAAGGCAAA 61.401 50.000 2.71 0.00 41.54 3.68
45 46 1.833492 ATGTGTGCTGGCAAGGCAA 60.833 52.632 2.71 0.00 41.54 4.52
46 47 2.203523 ATGTGTGCTGGCAAGGCA 60.204 55.556 0.00 0.00 37.36 4.75
47 48 2.260434 CATGTGTGCTGGCAAGGC 59.740 61.111 0.00 0.00 0.00 4.35
48 49 0.892358 AGACATGTGTGCTGGCAAGG 60.892 55.000 1.15 0.00 0.00 3.61
49 50 0.956633 AAGACATGTGTGCTGGCAAG 59.043 50.000 1.15 0.00 0.00 4.01
50 51 1.337703 GAAAGACATGTGTGCTGGCAA 59.662 47.619 1.15 0.00 0.00 4.52
51 52 0.953727 GAAAGACATGTGTGCTGGCA 59.046 50.000 1.15 0.00 0.00 4.92
52 53 1.198637 GAGAAAGACATGTGTGCTGGC 59.801 52.381 1.15 0.00 0.00 4.85
53 54 2.775890 AGAGAAAGACATGTGTGCTGG 58.224 47.619 1.15 0.00 0.00 4.85
54 55 6.492007 AAATAGAGAAAGACATGTGTGCTG 57.508 37.500 1.15 0.00 0.00 4.41
55 56 7.516198 AAAAATAGAGAAAGACATGTGTGCT 57.484 32.000 1.15 0.00 0.00 4.40
76 77 4.080015 ACACCGGATGGGATGATAGAAAAA 60.080 41.667 9.46 0.00 40.75 1.94
77 78 3.458118 ACACCGGATGGGATGATAGAAAA 59.542 43.478 9.46 0.00 40.75 2.29
78 79 3.045634 ACACCGGATGGGATGATAGAAA 58.954 45.455 9.46 0.00 40.75 2.52
79 80 2.689658 ACACCGGATGGGATGATAGAA 58.310 47.619 9.46 0.00 40.75 2.10
80 81 2.398754 ACACCGGATGGGATGATAGA 57.601 50.000 9.46 0.00 40.75 1.98
81 82 3.492102 AAACACCGGATGGGATGATAG 57.508 47.619 9.46 0.00 40.75 2.08
82 83 5.163141 ACAATAAACACCGGATGGGATGATA 60.163 40.000 9.46 0.00 40.75 2.15
83 84 4.144297 CAATAAACACCGGATGGGATGAT 58.856 43.478 9.46 0.00 40.75 2.45
84 85 3.053991 ACAATAAACACCGGATGGGATGA 60.054 43.478 9.46 0.00 40.75 2.92
85 86 3.287222 ACAATAAACACCGGATGGGATG 58.713 45.455 9.46 0.00 40.75 3.51
86 87 3.662759 ACAATAAACACCGGATGGGAT 57.337 42.857 9.46 0.00 40.75 3.85
87 88 3.443145 AACAATAAACACCGGATGGGA 57.557 42.857 9.46 0.00 40.75 4.37
88 89 5.845391 ATTAACAATAAACACCGGATGGG 57.155 39.130 9.46 0.00 40.75 4.00
89 90 7.095695 AGAATTAACAATAAACACCGGATGG 57.904 36.000 9.46 0.00 42.84 3.51
90 91 7.696453 GTGAGAATTAACAATAAACACCGGATG 59.304 37.037 9.46 5.32 0.00 3.51
91 92 7.392113 TGTGAGAATTAACAATAAACACCGGAT 59.608 33.333 9.46 0.00 0.00 4.18
92 93 6.711194 TGTGAGAATTAACAATAAACACCGGA 59.289 34.615 9.46 0.00 0.00 5.14
93 94 6.904498 TGTGAGAATTAACAATAAACACCGG 58.096 36.000 0.00 0.00 0.00 5.28
94 95 8.964420 AATGTGAGAATTAACAATAAACACCG 57.036 30.769 0.00 0.00 0.00 4.94
103 104 9.155975 GCTTCTCTCTAATGTGAGAATTAACAA 57.844 33.333 9.84 0.00 45.68 2.83
104 105 8.314021 TGCTTCTCTCTAATGTGAGAATTAACA 58.686 33.333 9.84 5.55 45.68 2.41
105 106 8.709386 TGCTTCTCTCTAATGTGAGAATTAAC 57.291 34.615 9.84 3.75 45.68 2.01
106 107 9.896645 AATGCTTCTCTCTAATGTGAGAATTAA 57.103 29.630 9.84 0.00 45.68 1.40
107 108 9.539825 GAATGCTTCTCTCTAATGTGAGAATTA 57.460 33.333 9.84 4.74 45.68 1.40
108 109 7.498570 GGAATGCTTCTCTCTAATGTGAGAATT 59.501 37.037 9.84 4.04 45.68 2.17
109 110 6.991531 GGAATGCTTCTCTCTAATGTGAGAAT 59.008 38.462 9.84 0.00 45.68 2.40
110 111 6.344500 GGAATGCTTCTCTCTAATGTGAGAA 58.656 40.000 9.27 9.27 45.10 2.87
111 112 5.163364 GGGAATGCTTCTCTCTAATGTGAGA 60.163 44.000 0.00 0.00 39.96 3.27
112 113 5.055812 GGGAATGCTTCTCTCTAATGTGAG 58.944 45.833 0.00 0.00 35.72 3.51
113 114 4.471025 TGGGAATGCTTCTCTCTAATGTGA 59.529 41.667 0.00 0.00 0.00 3.58
114 115 4.774124 TGGGAATGCTTCTCTCTAATGTG 58.226 43.478 0.00 0.00 0.00 3.21
115 116 4.718774 TCTGGGAATGCTTCTCTCTAATGT 59.281 41.667 0.00 0.00 0.00 2.71
116 117 5.287674 TCTGGGAATGCTTCTCTCTAATG 57.712 43.478 0.00 0.00 0.00 1.90
117 118 6.786959 AGTATCTGGGAATGCTTCTCTCTAAT 59.213 38.462 0.00 0.00 0.00 1.73
118 119 6.139671 AGTATCTGGGAATGCTTCTCTCTAA 58.860 40.000 0.00 0.00 0.00 2.10
119 120 5.710646 AGTATCTGGGAATGCTTCTCTCTA 58.289 41.667 0.00 0.00 0.00 2.43
120 121 4.555689 AGTATCTGGGAATGCTTCTCTCT 58.444 43.478 0.00 0.00 0.00 3.10
121 122 4.953940 AGTATCTGGGAATGCTTCTCTC 57.046 45.455 0.00 0.00 0.00 3.20
122 123 5.707066 AAAGTATCTGGGAATGCTTCTCT 57.293 39.130 0.00 0.00 31.40 3.10
123 124 5.994668 CCTAAAGTATCTGGGAATGCTTCTC 59.005 44.000 0.00 0.00 31.40 2.87
124 125 5.163152 CCCTAAAGTATCTGGGAATGCTTCT 60.163 44.000 0.00 0.00 42.11 2.85
125 126 5.066593 CCCTAAAGTATCTGGGAATGCTTC 58.933 45.833 0.00 0.00 42.11 3.86
126 127 4.141158 CCCCTAAAGTATCTGGGAATGCTT 60.141 45.833 0.00 0.00 42.11 3.91
127 128 3.395941 CCCCTAAAGTATCTGGGAATGCT 59.604 47.826 0.00 0.00 42.11 3.79
128 129 3.394606 TCCCCTAAAGTATCTGGGAATGC 59.605 47.826 0.00 0.00 42.24 3.56
132 133 4.037927 CAGTTCCCCTAAAGTATCTGGGA 58.962 47.826 0.00 0.00 43.47 4.37
133 134 4.037927 TCAGTTCCCCTAAAGTATCTGGG 58.962 47.826 0.00 0.00 39.37 4.45
134 135 5.509840 CGATCAGTTCCCCTAAAGTATCTGG 60.510 48.000 0.00 0.00 0.00 3.86
135 136 5.069251 ACGATCAGTTCCCCTAAAGTATCTG 59.931 44.000 0.00 0.00 0.00 2.90
136 137 5.069251 CACGATCAGTTCCCCTAAAGTATCT 59.931 44.000 0.00 0.00 0.00 1.98
137 138 5.068723 TCACGATCAGTTCCCCTAAAGTATC 59.931 44.000 0.00 0.00 0.00 2.24
138 139 4.960469 TCACGATCAGTTCCCCTAAAGTAT 59.040 41.667 0.00 0.00 0.00 2.12
139 140 4.159135 GTCACGATCAGTTCCCCTAAAGTA 59.841 45.833 0.00 0.00 0.00 2.24
140 141 3.056035 GTCACGATCAGTTCCCCTAAAGT 60.056 47.826 0.00 0.00 0.00 2.66
141 142 3.195825 AGTCACGATCAGTTCCCCTAAAG 59.804 47.826 0.00 0.00 0.00 1.85
142 143 3.170717 AGTCACGATCAGTTCCCCTAAA 58.829 45.455 0.00 0.00 0.00 1.85
143 144 2.758979 GAGTCACGATCAGTTCCCCTAA 59.241 50.000 0.00 0.00 0.00 2.69
144 145 2.291346 TGAGTCACGATCAGTTCCCCTA 60.291 50.000 0.00 0.00 0.00 3.53
145 146 1.187087 GAGTCACGATCAGTTCCCCT 58.813 55.000 0.00 0.00 0.00 4.79
146 147 0.895530 TGAGTCACGATCAGTTCCCC 59.104 55.000 0.00 0.00 0.00 4.81
147 148 1.272490 TGTGAGTCACGATCAGTTCCC 59.728 52.381 18.17 0.00 37.14 3.97
148 149 2.724977 TGTGAGTCACGATCAGTTCC 57.275 50.000 18.17 0.00 37.14 3.62
149 150 3.643763 ACTTGTGAGTCACGATCAGTTC 58.356 45.455 18.17 0.00 37.14 3.01
150 151 3.735237 ACTTGTGAGTCACGATCAGTT 57.265 42.857 18.17 0.00 37.14 3.16
151 152 4.278669 ACTTACTTGTGAGTCACGATCAGT 59.721 41.667 18.17 17.32 37.14 3.41
152 153 4.799678 ACTTACTTGTGAGTCACGATCAG 58.200 43.478 18.17 13.53 37.14 2.90
153 154 4.848562 ACTTACTTGTGAGTCACGATCA 57.151 40.909 18.17 4.64 37.14 2.92
154 155 7.009357 GGAAATACTTACTTGTGAGTCACGATC 59.991 40.741 18.17 7.46 37.14 3.69
155 156 6.812160 GGAAATACTTACTTGTGAGTCACGAT 59.188 38.462 18.17 8.63 37.14 3.73
156 157 6.154445 GGAAATACTTACTTGTGAGTCACGA 58.846 40.000 18.17 15.46 37.14 4.35
157 158 5.924254 TGGAAATACTTACTTGTGAGTCACG 59.076 40.000 18.17 7.64 37.14 4.35
158 159 7.441458 ACTTGGAAATACTTACTTGTGAGTCAC 59.559 37.037 16.68 16.68 37.33 3.67
159 160 7.506114 ACTTGGAAATACTTACTTGTGAGTCA 58.494 34.615 1.45 0.00 37.33 3.41
160 161 7.964604 ACTTGGAAATACTTACTTGTGAGTC 57.035 36.000 1.45 0.00 37.33 3.36
224 225 8.881262 TCCTCTTTGGAGAAACTACTAGAAAAT 58.119 33.333 0.00 0.00 41.86 1.82
367 3056 6.827251 AGGGATGAATATGCTGCAATATACTG 59.173 38.462 6.36 0.00 0.00 2.74
370 3059 8.654485 AAAAGGGATGAATATGCTGCAATATA 57.346 30.769 6.36 0.00 0.00 0.86
379 3068 9.346725 GATTATTTCGAAAAGGGATGAATATGC 57.653 33.333 15.66 0.00 0.00 3.14
385 3074 9.845740 TTAGATGATTATTTCGAAAAGGGATGA 57.154 29.630 15.66 1.69 0.00 2.92
389 3078 9.884465 GATGTTAGATGATTATTTCGAAAAGGG 57.116 33.333 15.66 0.00 0.00 3.95
397 3087 9.232473 GTAAGGGGGATGTTAGATGATTATTTC 57.768 37.037 0.00 0.00 0.00 2.17
414 3104 1.518367 CATAGCTTGGGTAAGGGGGA 58.482 55.000 0.00 0.00 34.40 4.81
446 3136 6.025896 CGTCTCATTATGATGCATATTTGGC 58.974 40.000 0.00 0.00 33.14 4.52
453 3143 4.707105 TGGAACGTCTCATTATGATGCAT 58.293 39.130 0.00 0.00 33.14 3.96
456 3146 6.293626 GGGAATTGGAACGTCTCATTATGATG 60.294 42.308 0.00 0.00 34.46 3.07
457 3147 5.765182 GGGAATTGGAACGTCTCATTATGAT 59.235 40.000 0.00 0.00 0.00 2.45
459 3149 4.881273 TGGGAATTGGAACGTCTCATTATG 59.119 41.667 0.00 0.00 0.00 1.90
460 3150 5.110814 TGGGAATTGGAACGTCTCATTAT 57.889 39.130 0.00 0.00 0.00 1.28
490 3180 1.950909 TGTTTTTAGTGTCCTTGGGCG 59.049 47.619 0.00 0.00 0.00 6.13
492 3182 3.190535 CCGATGTTTTTAGTGTCCTTGGG 59.809 47.826 0.00 0.00 0.00 4.12
495 3185 2.817844 GCCCGATGTTTTTAGTGTCCTT 59.182 45.455 0.00 0.00 0.00 3.36
497 3187 1.471287 GGCCCGATGTTTTTAGTGTCC 59.529 52.381 0.00 0.00 0.00 4.02
505 3195 1.526575 CTGCACAGGCCCGATGTTTT 61.527 55.000 0.00 0.00 40.13 2.43
506 3196 1.973281 CTGCACAGGCCCGATGTTT 60.973 57.895 0.00 0.00 40.13 2.83
510 3200 3.320879 CTGTCTGCACAGGCCCGAT 62.321 63.158 0.00 0.00 45.75 4.18
511 3201 4.007644 CTGTCTGCACAGGCCCGA 62.008 66.667 0.00 0.00 45.75 5.14
532 3222 3.626028 ACATTGAGTTTCCGAACTTGC 57.374 42.857 0.00 0.00 45.88 4.01
538 3228 4.341487 TCCTCTCTACATTGAGTTTCCGA 58.659 43.478 0.00 0.00 35.68 4.55
549 3239 2.443632 TGGACGGATCTCCTCTCTACAT 59.556 50.000 2.92 0.00 0.00 2.29
552 3242 2.040545 GGATGGACGGATCTCCTCTCTA 59.959 54.545 2.92 0.00 0.00 2.43
563 3253 1.195115 CTTCTCCTTGGATGGACGGA 58.805 55.000 0.00 0.00 31.94 4.69
595 3293 4.158394 GCTTTCAGTTTCCATAGGCAATGA 59.842 41.667 0.09 0.00 37.86 2.57
630 3328 3.181513 CGATTCACAAGGTCAAGCATGAG 60.182 47.826 0.00 0.00 35.88 2.90
645 3343 6.148811 TGTCCCAATTTTAGAAGTCGATTCAC 59.851 38.462 9.31 0.00 40.67 3.18
665 3363 1.271707 TGGGAATCGGTTTCTTGTCCC 60.272 52.381 0.00 0.00 44.31 4.46
670 3368 6.039382 GTGCTAATATTGGGAATCGGTTTCTT 59.961 38.462 0.00 0.00 34.56 2.52
671 3369 5.531287 GTGCTAATATTGGGAATCGGTTTCT 59.469 40.000 0.00 0.00 34.56 2.52
672 3370 5.531287 AGTGCTAATATTGGGAATCGGTTTC 59.469 40.000 0.00 0.00 0.00 2.78
673 3371 5.445964 AGTGCTAATATTGGGAATCGGTTT 58.554 37.500 0.00 0.00 0.00 3.27
674 3372 5.048846 AGTGCTAATATTGGGAATCGGTT 57.951 39.130 0.00 0.00 0.00 4.44
675 3373 4.706842 AGTGCTAATATTGGGAATCGGT 57.293 40.909 0.00 0.00 0.00 4.69
676 3374 8.665685 GTTAATAGTGCTAATATTGGGAATCGG 58.334 37.037 0.00 0.00 0.00 4.18
679 3377 9.860650 TGTGTTAATAGTGCTAATATTGGGAAT 57.139 29.630 0.00 0.00 0.00 3.01
681 3379 8.710239 TCTGTGTTAATAGTGCTAATATTGGGA 58.290 33.333 0.00 0.00 0.00 4.37
682 3380 8.902540 TCTGTGTTAATAGTGCTAATATTGGG 57.097 34.615 0.00 0.00 0.00 4.12
686 3384 9.982651 ACGATTCTGTGTTAATAGTGCTAATAT 57.017 29.630 0.00 0.00 0.00 1.28
689 3387 8.464404 AGTACGATTCTGTGTTAATAGTGCTAA 58.536 33.333 0.00 0.00 34.76 3.09
690 3388 7.993101 AGTACGATTCTGTGTTAATAGTGCTA 58.007 34.615 0.00 0.00 34.76 3.49
692 3390 7.521509 AAGTACGATTCTGTGTTAATAGTGC 57.478 36.000 0.00 0.00 0.00 4.40
703 3432 9.052759 AGTCACAAATAAAAAGTACGATTCTGT 57.947 29.630 0.00 0.00 0.00 3.41
705 3434 9.268268 TGAGTCACAAATAAAAAGTACGATTCT 57.732 29.630 0.00 0.00 0.00 2.40
711 3440 7.078228 CAGCCTGAGTCACAAATAAAAAGTAC 58.922 38.462 0.00 0.00 0.00 2.73
720 3449 2.146342 CGAACAGCCTGAGTCACAAAT 58.854 47.619 0.00 0.00 0.00 2.32
739 3468 6.002062 AGGCAGATTTTAAGTTCAAAGTCG 57.998 37.500 0.00 0.00 31.48 4.18
742 3471 8.877808 AAAGAAGGCAGATTTTAAGTTCAAAG 57.122 30.769 0.00 0.00 0.00 2.77
801 3541 1.273759 TTTTGCTGCCATGCCCATTA 58.726 45.000 0.00 0.00 0.00 1.90
802 3542 0.400975 TTTTTGCTGCCATGCCCATT 59.599 45.000 0.00 0.00 0.00 3.16
803 3543 2.068056 TTTTTGCTGCCATGCCCAT 58.932 47.368 0.00 0.00 0.00 4.00
804 3544 3.559731 TTTTTGCTGCCATGCCCA 58.440 50.000 0.00 0.00 0.00 5.36
929 3675 0.405973 GGAGGGGAGAGGCAGTTTTT 59.594 55.000 0.00 0.00 0.00 1.94
930 3676 0.772124 TGGAGGGGAGAGGCAGTTTT 60.772 55.000 0.00 0.00 0.00 2.43
931 3677 1.151810 TGGAGGGGAGAGGCAGTTT 60.152 57.895 0.00 0.00 0.00 2.66
932 3678 1.920835 GTGGAGGGGAGAGGCAGTT 60.921 63.158 0.00 0.00 0.00 3.16
933 3679 2.284995 GTGGAGGGGAGAGGCAGT 60.285 66.667 0.00 0.00 0.00 4.40
934 3680 3.086600 GGTGGAGGGGAGAGGCAG 61.087 72.222 0.00 0.00 0.00 4.85
935 3681 3.615811 AGGTGGAGGGGAGAGGCA 61.616 66.667 0.00 0.00 0.00 4.75
1068 3814 4.250464 CGCTAACCTGGTTGAATACTTCA 58.750 43.478 22.04 0.00 38.04 3.02
1074 3820 1.674817 CGGACGCTAACCTGGTTGAAT 60.675 52.381 22.04 4.85 0.00 2.57
1331 4186 1.202394 TGCCTGCACACATTTTCACAC 60.202 47.619 0.00 0.00 0.00 3.82
1392 4248 5.401674 GGCTAACGGAATAAGTACTGAATCG 59.598 44.000 0.00 0.26 0.00 3.34
1410 4266 0.603975 GGATCCTGCATCGGGCTAAC 60.604 60.000 3.84 0.00 45.15 2.34
1491 4347 7.300658 ACTTATATTTAGGAACGGAGGGAGTA 58.699 38.462 0.00 0.00 0.00 2.59
1492 4348 6.141790 ACTTATATTTAGGAACGGAGGGAGT 58.858 40.000 0.00 0.00 0.00 3.85
1493 4349 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
1494 4350 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
1495 4351 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
1496 4352 7.985752 ACAAAGACTTATATTTAGGAACGGAGG 59.014 37.037 0.00 0.00 0.00 4.30
1497 4353 8.943909 ACAAAGACTTATATTTAGGAACGGAG 57.056 34.615 0.00 0.00 0.00 4.63
1518 4374 9.952030 TGTGGTTCATAGTGAAATCTATACAAA 57.048 29.630 0.00 0.00 38.22 2.83
1522 4378 9.908152 CGTATGTGGTTCATAGTGAAATCTATA 57.092 33.333 0.00 0.00 38.22 1.31
1523 4379 7.872993 CCGTATGTGGTTCATAGTGAAATCTAT 59.127 37.037 0.00 0.00 38.22 1.98
1524 4380 7.068962 TCCGTATGTGGTTCATAGTGAAATCTA 59.931 37.037 0.00 0.00 38.22 1.98
1525 4381 6.049149 CCGTATGTGGTTCATAGTGAAATCT 58.951 40.000 0.00 0.00 38.22 2.40
1526 4382 6.046593 TCCGTATGTGGTTCATAGTGAAATC 58.953 40.000 0.00 0.00 38.22 2.17
1527 4383 5.984725 TCCGTATGTGGTTCATAGTGAAAT 58.015 37.500 0.00 0.00 38.22 2.17
1528 4384 5.408880 TCCGTATGTGGTTCATAGTGAAA 57.591 39.130 0.00 0.00 38.22 2.69
1529 4385 5.105106 ACATCCGTATGTGGTTCATAGTGAA 60.105 40.000 0.00 0.00 44.79 3.18
1530 4386 4.404394 ACATCCGTATGTGGTTCATAGTGA 59.596 41.667 0.00 0.00 44.79 3.41
1531 4387 4.693283 ACATCCGTATGTGGTTCATAGTG 58.307 43.478 0.00 0.00 44.79 2.74
1532 4388 6.665992 ATACATCCGTATGTGGTTCATAGT 57.334 37.500 3.56 0.00 45.99 2.12
1533 4389 9.952188 CTATATACATCCGTATGTGGTTCATAG 57.048 37.037 3.56 0.80 45.99 2.23
1534 4390 9.689501 TCTATATACATCCGTATGTGGTTCATA 57.310 33.333 3.56 0.00 45.99 2.15
1535 4391 8.589701 TCTATATACATCCGTATGTGGTTCAT 57.410 34.615 3.56 0.00 45.99 2.57
1536 4392 8.466798 CATCTATATACATCCGTATGTGGTTCA 58.533 37.037 3.56 0.00 45.99 3.18
1537 4393 7.435488 GCATCTATATACATCCGTATGTGGTTC 59.565 40.741 3.56 0.00 45.99 3.62
1538 4394 7.093509 TGCATCTATATACATCCGTATGTGGTT 60.094 37.037 3.56 0.00 45.99 3.67
1539 4395 6.379988 TGCATCTATATACATCCGTATGTGGT 59.620 38.462 3.56 0.00 45.99 4.16
1540 4396 6.805713 TGCATCTATATACATCCGTATGTGG 58.194 40.000 3.56 0.00 45.99 4.17
1541 4397 8.877808 AATGCATCTATATACATCCGTATGTG 57.122 34.615 3.56 0.00 45.99 3.21
1546 4402 9.809096 CTCTAAAATGCATCTATATACATCCGT 57.191 33.333 0.00 0.00 0.00 4.69
1547 4403 9.809096 ACTCTAAAATGCATCTATATACATCCG 57.191 33.333 0.00 0.00 0.00 4.18
1557 4413 9.534565 GTGAATCTACACTCTAAAATGCATCTA 57.465 33.333 0.00 0.00 37.73 1.98
1558 4414 8.263640 AGTGAATCTACACTCTAAAATGCATCT 58.736 33.333 0.00 0.00 46.36 2.90
1559 4415 8.430801 AGTGAATCTACACTCTAAAATGCATC 57.569 34.615 0.00 0.00 46.36 3.91
1572 4428 4.268884 GGAGCGAATTGAGTGAATCTACAC 59.731 45.833 0.00 0.00 40.60 2.90
1573 4429 4.433615 GGAGCGAATTGAGTGAATCTACA 58.566 43.478 0.00 0.00 0.00 2.74
1574 4430 3.487574 CGGAGCGAATTGAGTGAATCTAC 59.512 47.826 0.00 0.00 0.00 2.59
1575 4431 3.130516 ACGGAGCGAATTGAGTGAATCTA 59.869 43.478 0.00 0.00 0.00 1.98
1576 4432 2.093973 ACGGAGCGAATTGAGTGAATCT 60.094 45.455 0.00 0.00 0.00 2.40
1577 4433 2.271800 ACGGAGCGAATTGAGTGAATC 58.728 47.619 0.00 0.00 0.00 2.52
1578 4434 2.386661 ACGGAGCGAATTGAGTGAAT 57.613 45.000 0.00 0.00 0.00 2.57
1579 4435 3.186909 CATACGGAGCGAATTGAGTGAA 58.813 45.455 0.00 0.00 0.00 3.18
1580 4436 2.165641 ACATACGGAGCGAATTGAGTGA 59.834 45.455 0.00 0.00 0.00 3.41
1581 4437 2.540515 ACATACGGAGCGAATTGAGTG 58.459 47.619 0.00 0.00 0.00 3.51
1582 4438 2.961526 ACATACGGAGCGAATTGAGT 57.038 45.000 0.00 0.00 0.00 3.41
1583 4439 3.966154 ACTACATACGGAGCGAATTGAG 58.034 45.455 0.00 0.00 0.00 3.02
1584 4440 3.243301 GGACTACATACGGAGCGAATTGA 60.243 47.826 0.00 0.00 0.00 2.57
1585 4441 3.050619 GGACTACATACGGAGCGAATTG 58.949 50.000 0.00 0.00 0.00 2.32
1586 4442 2.691526 TGGACTACATACGGAGCGAATT 59.308 45.455 0.00 0.00 0.00 2.17
1587 4443 2.304092 TGGACTACATACGGAGCGAAT 58.696 47.619 0.00 0.00 0.00 3.34
1588 4444 1.753930 TGGACTACATACGGAGCGAA 58.246 50.000 0.00 0.00 0.00 4.70
1589 4445 1.977056 ATGGACTACATACGGAGCGA 58.023 50.000 0.00 0.00 38.26 4.93
1590 4446 2.812591 ACTATGGACTACATACGGAGCG 59.187 50.000 0.00 0.00 41.03 5.03
1591 4447 5.243981 TCTACTATGGACTACATACGGAGC 58.756 45.833 0.00 0.00 41.03 4.70
1592 4448 7.825270 AGATTCTACTATGGACTACATACGGAG 59.175 40.741 0.00 0.00 41.03 4.63
1593 4449 7.687388 AGATTCTACTATGGACTACATACGGA 58.313 38.462 0.00 0.00 41.03 4.69
1594 4450 7.825270 AGAGATTCTACTATGGACTACATACGG 59.175 40.741 0.00 0.00 41.03 4.02
1595 4451 8.780846 AGAGATTCTACTATGGACTACATACG 57.219 38.462 0.00 0.00 41.03 3.06
1621 4477 7.985752 CCTCGGTTCCTAAATATAAGTCTTTGT 59.014 37.037 0.00 0.00 0.00 2.83
1622 4478 7.441458 CCCTCGGTTCCTAAATATAAGTCTTTG 59.559 40.741 0.00 0.00 0.00 2.77
1623 4479 7.346436 TCCCTCGGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
1624 4480 6.842807 TCCCTCGGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
1625 4481 6.379579 TCCCTCGGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
1626 4482 6.267242 ACTCCCTCGGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
1627 4483 6.141790 ACTCCCTCGGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
1628 4484 6.667558 ACTCCCTCGGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
1629 4485 7.529555 TCTACTCCCTCGGTTCCTAAATATAA 58.470 38.462 0.00 0.00 0.00 0.98
1630 4486 7.095183 TCTACTCCCTCGGTTCCTAAATATA 57.905 40.000 0.00 0.00 0.00 0.86
1631 4487 5.961897 TCTACTCCCTCGGTTCCTAAATAT 58.038 41.667 0.00 0.00 0.00 1.28
1632 4488 5.393068 TCTACTCCCTCGGTTCCTAAATA 57.607 43.478 0.00 0.00 0.00 1.40
1633 4489 4.261411 TCTACTCCCTCGGTTCCTAAAT 57.739 45.455 0.00 0.00 0.00 1.40
1634 4490 3.744940 TCTACTCCCTCGGTTCCTAAA 57.255 47.619 0.00 0.00 0.00 1.85
1635 4491 3.746751 CGATCTACTCCCTCGGTTCCTAA 60.747 52.174 0.00 0.00 0.00 2.69
1636 4492 2.224475 CGATCTACTCCCTCGGTTCCTA 60.224 54.545 0.00 0.00 0.00 2.94
1637 4493 1.477195 CGATCTACTCCCTCGGTTCCT 60.477 57.143 0.00 0.00 0.00 3.36
1638 4494 0.953003 CGATCTACTCCCTCGGTTCC 59.047 60.000 0.00 0.00 0.00 3.62
1639 4495 0.311477 GCGATCTACTCCCTCGGTTC 59.689 60.000 0.00 0.00 33.17 3.62
1640 4496 0.395311 TGCGATCTACTCCCTCGGTT 60.395 55.000 0.00 0.00 33.17 4.44
1641 4497 0.178987 ATGCGATCTACTCCCTCGGT 60.179 55.000 0.00 0.00 33.17 4.69
1642 4498 0.242286 CATGCGATCTACTCCCTCGG 59.758 60.000 0.00 0.00 33.17 4.63
1643 4499 1.068885 GTCATGCGATCTACTCCCTCG 60.069 57.143 0.00 0.00 35.57 4.63
1644 4500 2.235016 AGTCATGCGATCTACTCCCTC 58.765 52.381 0.00 0.00 0.00 4.30
1645 4501 2.373335 AGTCATGCGATCTACTCCCT 57.627 50.000 0.00 0.00 0.00 4.20
1646 4502 5.590663 TGATATAGTCATGCGATCTACTCCC 59.409 44.000 0.00 0.00 0.00 4.30
1647 4503 6.317642 ACTGATATAGTCATGCGATCTACTCC 59.682 42.308 0.00 0.00 33.17 3.85
1648 4504 7.315247 ACTGATATAGTCATGCGATCTACTC 57.685 40.000 0.00 0.00 33.17 2.59
1649 4505 8.835439 CATACTGATATAGTCATGCGATCTACT 58.165 37.037 0.00 0.00 40.89 2.57
1673 4542 3.407424 TCAGCTACAACTGCAACTCAT 57.593 42.857 0.00 0.00 37.59 2.90
1680 4549 2.275318 GGACAGATCAGCTACAACTGC 58.725 52.381 0.00 0.00 37.59 4.40
1686 4555 0.818296 ACGGTGGACAGATCAGCTAC 59.182 55.000 0.00 0.00 0.00 3.58
1732 4601 4.250116 TGTTGATGTTAAATGTGCCACC 57.750 40.909 0.00 0.00 0.00 4.61
1735 4604 7.491682 AGGAATATGTTGATGTTAAATGTGCC 58.508 34.615 0.00 0.00 0.00 5.01
1744 4613 6.209192 TGTTGCAGAAGGAATATGTTGATGTT 59.791 34.615 0.00 0.00 0.00 2.71
1762 4631 3.318839 TCATCCAAACTTTCCTGTTGCAG 59.681 43.478 0.00 0.00 0.00 4.41
1806 4675 3.374988 CGCAAGCATTTCCTAATGAGTCA 59.625 43.478 0.00 0.00 43.12 3.41
1827 4696 3.431922 TGGAGTAAAGCGATAGTTCCG 57.568 47.619 0.00 0.00 39.35 4.30
1845 4714 2.684001 ATGCATTTCCAACAGCATGG 57.316 45.000 0.00 0.00 45.19 3.66
1869 4738 7.068962 AGAGCTTACTTACCTAGACTGATTTCC 59.931 40.741 0.00 0.00 0.00 3.13
1891 4760 1.336125 AGAAGCACAAAAGCACAGAGC 59.664 47.619 0.00 0.00 46.19 4.09
1924 4794 2.346766 TGTGCAACAGACAGAATGGT 57.653 45.000 0.00 0.00 45.67 3.55
1952 4822 0.638292 ACATGGAATCAATGCCCCCT 59.362 50.000 0.00 0.00 0.00 4.79
1967 4837 5.815740 ACCGCAAATTCTACTAACCTACATG 59.184 40.000 0.00 0.00 0.00 3.21
2022 4892 2.472695 ACAGAGGCATAAGCACGAAA 57.527 45.000 0.00 0.00 44.61 3.46
2023 4893 2.472695 AACAGAGGCATAAGCACGAA 57.527 45.000 0.00 0.00 44.61 3.85
2024 4894 2.472695 AAACAGAGGCATAAGCACGA 57.527 45.000 0.00 0.00 44.61 4.35
2151 5022 7.556275 GTGATCAAGGTAAGGATGAATGGTTTA 59.444 37.037 0.00 0.00 0.00 2.01
2154 5025 5.192522 AGTGATCAAGGTAAGGATGAATGGT 59.807 40.000 0.00 0.00 0.00 3.55
2206 5078 5.277779 GCACGCTAAATGTATGGCATAAGAA 60.278 40.000 9.14 0.00 36.67 2.52
2311 5183 6.152661 TCCCAGTTCACATAAGCCAAAAATAG 59.847 38.462 0.00 0.00 0.00 1.73
2380 5252 6.720112 ATTTATTCATTCCCCACACATCAG 57.280 37.500 0.00 0.00 0.00 2.90
2391 5263 9.533253 CAAGTTCCATGGTTATTTATTCATTCC 57.467 33.333 12.58 0.00 0.00 3.01
2406 5278 6.923928 AAACAACAATTTCAAGTTCCATGG 57.076 33.333 4.97 4.97 0.00 3.66
2483 5355 6.691388 CACTGGTTACTAGAACAAAGTTTTGC 59.309 38.462 1.98 0.00 41.79 3.68
2535 5410 9.896263 GGTAGTCTGTTAGATACTAATTAGTGC 57.104 37.037 25.27 17.29 37.10 4.40
2540 5415 8.915036 CCTGTGGTAGTCTGTTAGATACTAATT 58.085 37.037 0.00 0.00 0.00 1.40
2542 5417 7.555554 GTCCTGTGGTAGTCTGTTAGATACTAA 59.444 40.741 0.00 0.00 0.00 2.24
2543 5418 7.052873 GTCCTGTGGTAGTCTGTTAGATACTA 58.947 42.308 0.00 0.00 0.00 1.82
2544 5419 5.887035 GTCCTGTGGTAGTCTGTTAGATACT 59.113 44.000 0.00 0.00 0.00 2.12
2545 5420 5.220815 CGTCCTGTGGTAGTCTGTTAGATAC 60.221 48.000 0.00 0.00 0.00 2.24
2701 5580 2.752354 CAAACGAGGGCCATGTATGAAA 59.248 45.455 6.18 0.00 0.00 2.69
2714 5593 0.523072 CACCAATCTGGCAAACGAGG 59.477 55.000 0.00 0.00 42.67 4.63
2729 5608 3.324846 AGTGCTCTTCTACAATGTCACCA 59.675 43.478 0.00 0.00 0.00 4.17
2771 5650 7.674471 AGACCAGCAAAAAGACTTACTATTC 57.326 36.000 0.00 0.00 0.00 1.75
2775 5654 5.437060 TCAAGACCAGCAAAAAGACTTACT 58.563 37.500 0.00 0.00 0.00 2.24
2829 5708 8.409371 ACAGATATATGCCACTCATTACTATCG 58.591 37.037 0.00 0.00 36.63 2.92
2972 5851 0.521735 GCCTTTACAGTTCCAAGCCG 59.478 55.000 0.00 0.00 0.00 5.52
2981 5860 9.435570 TCTCTATTTATTCTAGGCCTTTACAGT 57.564 33.333 12.58 0.00 0.00 3.55
2982 5861 9.921637 CTCTCTATTTATTCTAGGCCTTTACAG 57.078 37.037 12.58 1.01 0.00 2.74
2983 5862 8.368668 GCTCTCTATTTATTCTAGGCCTTTACA 58.631 37.037 12.58 0.00 0.00 2.41
2984 5863 8.368668 TGCTCTCTATTTATTCTAGGCCTTTAC 58.631 37.037 12.58 0.00 0.00 2.01
2985 5864 8.492415 TGCTCTCTATTTATTCTAGGCCTTTA 57.508 34.615 12.58 0.00 0.00 1.85
3117 6064 7.081349 CAGAACAACTGTGTCTAGAAGACTAG 58.919 42.308 8.42 8.79 40.48 2.57
3118 6065 6.971602 CAGAACAACTGTGTCTAGAAGACTA 58.028 40.000 8.42 0.00 40.48 2.59
3203 6150 7.815068 CAGTAACTGAATCTGCTAGTGTAACTT 59.185 37.037 0.00 0.00 40.45 2.66
3204 6151 7.316640 CAGTAACTGAATCTGCTAGTGTAACT 58.683 38.462 0.00 0.00 42.15 2.24
3205 6152 6.531948 CCAGTAACTGAATCTGCTAGTGTAAC 59.468 42.308 0.00 0.00 32.44 2.50
3206 6153 6.210784 ACCAGTAACTGAATCTGCTAGTGTAA 59.789 38.462 0.00 0.00 32.44 2.41
3238 6185 0.169009 GCCATGAAAAGCACGACTCC 59.831 55.000 0.00 0.00 0.00 3.85
3256 6203 4.483476 ACCAAAACGTCAAGACTAATGC 57.517 40.909 0.00 0.00 0.00 3.56
3336 6283 2.646930 TCACAGGCCATGAGCAATTAG 58.353 47.619 5.01 0.00 46.50 1.73
3438 6385 0.802994 TATCCCGTGTTGTTAGCGCG 60.803 55.000 0.00 0.00 39.26 6.86
3439 6386 1.578583 ATATCCCGTGTTGTTAGCGC 58.421 50.000 0.00 0.00 0.00 5.92
3440 6387 3.183775 GCTTATATCCCGTGTTGTTAGCG 59.816 47.826 0.00 0.00 0.00 4.26
3444 6391 5.609533 ACTAGCTTATATCCCGTGTTGTT 57.390 39.130 0.00 0.00 0.00 2.83
3446 6393 6.018994 GTGAAACTAGCTTATATCCCGTGTTG 60.019 42.308 0.00 0.00 0.00 3.33
3475 6424 8.286800 GTCAACAAAACATAACACTGTATAGCA 58.713 33.333 0.00 0.00 0.00 3.49
3490 6439 0.457443 TGCGCCATGTCAACAAAACA 59.543 45.000 4.18 0.00 0.00 2.83
3523 6472 1.867233 CAACGGCACTGGCATATACTC 59.133 52.381 3.16 0.00 43.71 2.59
3630 6579 4.156008 GTGGGTGTGATTGAATAAGTGGTC 59.844 45.833 0.00 0.00 0.00 4.02
3631 6580 4.079253 GTGGGTGTGATTGAATAAGTGGT 58.921 43.478 0.00 0.00 0.00 4.16
3632 6581 4.078537 TGTGGGTGTGATTGAATAAGTGG 58.921 43.478 0.00 0.00 0.00 4.00
3748 6705 1.076412 TGTTTTGGTGGGAGCTGCA 60.076 52.632 7.79 0.00 0.00 4.41
3774 6731 9.474313 ACTGTTATGATCTCTTTCTAGTCTTCT 57.526 33.333 0.00 0.00 0.00 2.85
3833 6791 0.957395 ATGTCGGCTGTCCTTTGCTG 60.957 55.000 0.00 0.00 36.94 4.41
3888 6882 2.767394 TGGGCAGTTAGATAACCGCTAA 59.233 45.455 10.00 0.00 39.07 3.09
3923 6917 6.562228 TGTACTGTAAGCAGGGGAGATATAT 58.438 40.000 0.00 0.00 46.62 0.86
3943 6937 6.814343 ACACAAAGAACGTCGATTATTGTAC 58.186 36.000 0.00 0.00 0.00 2.90
3955 6949 2.940410 CCTGGTACAACACAAAGAACGT 59.060 45.455 0.00 0.00 38.70 3.99
3969 6963 1.299541 CATTCACGGCATCCTGGTAC 58.700 55.000 0.00 0.00 0.00 3.34
3997 6991 1.071385 GGGAATCCTCTGCATCATCGT 59.929 52.381 0.00 0.00 0.00 3.73
4018 7012 6.128007 ACCATCACATTGAAGTTTACCGAATC 60.128 38.462 0.00 0.00 0.00 2.52
4059 7053 5.712152 AAGAAATGGCACCTCTTTACTTG 57.288 39.130 7.01 0.00 0.00 3.16
4100 7094 2.175035 CTTCACCCCTTCCGCCGTAA 62.175 60.000 0.00 0.00 0.00 3.18
4183 7177 2.393271 ATCTAGACAAGCACACAGGC 57.607 50.000 0.00 0.00 0.00 4.85
4253 7250 9.322773 CCATACATATCACAGGAATATAAGCAG 57.677 37.037 0.00 0.00 0.00 4.24
4265 7262 5.164233 GTGATCGACCCATACATATCACAG 58.836 45.833 0.00 0.00 41.66 3.66
4365 7362 1.300080 CAAGTGGCTGCAAAACGGG 60.300 57.895 0.50 0.00 0.00 5.28
4370 7367 1.141449 GTGCACAAGTGGCTGCAAA 59.859 52.632 13.17 0.00 44.82 3.68
4372 7369 3.218470 GGTGCACAAGTGGCTGCA 61.218 61.111 20.43 0.00 41.13 4.41
4373 7370 2.412037 GAAGGTGCACAAGTGGCTGC 62.412 60.000 20.43 0.00 0.00 5.25
4374 7371 1.102809 TGAAGGTGCACAAGTGGCTG 61.103 55.000 20.43 0.00 0.00 4.85
4375 7372 1.103398 GTGAAGGTGCACAAGTGGCT 61.103 55.000 20.43 1.74 38.63 4.75
4376 7373 1.103398 AGTGAAGGTGCACAAGTGGC 61.103 55.000 20.43 0.00 41.19 5.01
4379 7376 3.838244 TTCTAGTGAAGGTGCACAAGT 57.162 42.857 20.43 2.02 41.19 3.16
4380 7377 7.981789 TCTTATATTCTAGTGAAGGTGCACAAG 59.018 37.037 20.43 7.56 41.19 3.16
4381 7378 7.847096 TCTTATATTCTAGTGAAGGTGCACAA 58.153 34.615 20.43 0.58 41.19 3.33
4382 7379 7.418337 TCTTATATTCTAGTGAAGGTGCACA 57.582 36.000 20.43 0.00 41.19 4.57
4384 7381 6.098266 TGCTCTTATATTCTAGTGAAGGTGCA 59.902 38.462 0.00 0.00 35.44 4.57
4385 7382 6.516718 TGCTCTTATATTCTAGTGAAGGTGC 58.483 40.000 0.00 0.00 35.44 5.01
4386 7383 8.363390 TGATGCTCTTATATTCTAGTGAAGGTG 58.637 37.037 0.00 0.00 35.44 4.00
4387 7384 8.484214 TGATGCTCTTATATTCTAGTGAAGGT 57.516 34.615 0.00 0.00 35.44 3.50
4388 7385 9.202273 GTTGATGCTCTTATATTCTAGTGAAGG 57.798 37.037 0.00 0.00 35.44 3.46
4391 7388 9.920133 GATGTTGATGCTCTTATATTCTAGTGA 57.080 33.333 0.00 0.00 0.00 3.41
4403 7400 0.749454 GCCCGGATGTTGATGCTCTT 60.749 55.000 0.73 0.00 0.00 2.85
4404 7401 1.153086 GCCCGGATGTTGATGCTCT 60.153 57.895 0.73 0.00 0.00 4.09
4405 7402 2.537560 CGCCCGGATGTTGATGCTC 61.538 63.158 0.73 0.00 0.00 4.26
4406 7403 2.514592 CGCCCGGATGTTGATGCT 60.515 61.111 0.73 0.00 0.00 3.79
4407 7404 2.823829 GACGCCCGGATGTTGATGC 61.824 63.158 0.73 0.00 0.00 3.91
4408 7405 2.180204 GGACGCCCGGATGTTGATG 61.180 63.158 0.73 0.00 0.00 3.07
4409 7406 2.189521 GGACGCCCGGATGTTGAT 59.810 61.111 0.73 0.00 0.00 2.57
4410 7407 4.090588 GGGACGCCCGGATGTTGA 62.091 66.667 0.73 0.00 32.13 3.18
4424 7421 0.182537 CATATGAGGCGGGTTTGGGA 59.817 55.000 0.00 0.00 0.00 4.37
4426 7423 1.455383 GGCATATGAGGCGGGTTTGG 61.455 60.000 6.97 0.00 0.00 3.28
4432 7429 4.704833 CCCGGGCATATGAGGCGG 62.705 72.222 8.08 0.00 34.40 6.13
4476 7473 3.507233 CACCCCATATGCGCTTCATATTT 59.493 43.478 9.73 0.00 43.91 1.40
4479 7476 1.881925 GCACCCCATATGCGCTTCATA 60.882 52.381 9.73 0.00 41.52 2.15
4481 7478 1.823470 GCACCCCATATGCGCTTCA 60.823 57.895 9.73 0.00 32.45 3.02
4482 7479 3.034030 GCACCCCATATGCGCTTC 58.966 61.111 9.73 0.00 32.45 3.86
4488 7485 2.195567 CGCCCAAGCACCCCATATG 61.196 63.158 0.00 0.00 39.83 1.78
4549 7548 4.536090 GTGGATGGGGAGGAATATATGTGA 59.464 45.833 0.00 0.00 0.00 3.58
4576 7576 4.044065 TGAAGTGATTAGGGTTTGGTCCAT 59.956 41.667 0.00 0.00 0.00 3.41
4577 7577 3.396276 TGAAGTGATTAGGGTTTGGTCCA 59.604 43.478 0.00 0.00 0.00 4.02
4592 7592 0.106708 GGCAGTGGAGTGTGAAGTGA 59.893 55.000 0.00 0.00 0.00 3.41
4616 7618 1.522569 CTTGGGTAGCGGAAGGAGG 59.477 63.158 0.00 0.00 0.00 4.30
4675 7678 0.755698 GGTCAGGGTCAGATCCGCTA 60.756 60.000 0.00 0.00 0.00 4.26
4688 7691 2.786495 CGGATCCGGACTGGTCAGG 61.786 68.421 26.95 12.51 44.71 3.86
4708 7711 2.998949 GGGATGACACCCCAGTCC 59.001 66.667 0.00 0.00 43.81 3.85
4774 7777 3.209812 CGGGCGATGTCCTCTCGA 61.210 66.667 0.00 0.00 38.38 4.04
4804 7807 0.684535 TGGAATCGTGCCAGACAGAA 59.315 50.000 0.00 0.00 0.00 3.02
4819 7822 0.459585 GTTCAGCCGACGCTATGGAA 60.460 55.000 0.00 0.00 46.25 3.53
4848 7851 3.000819 ATCGAACCACCGAGGGCA 61.001 61.111 0.00 0.00 43.89 5.36
4850 7853 0.249489 GATGATCGAACCACCGAGGG 60.249 60.000 0.00 0.00 43.89 4.30
4855 7858 0.108329 ACCACGATGATCGAACCACC 60.108 55.000 22.88 0.00 43.74 4.61
4857 7860 0.174845 GGACCACGATGATCGAACCA 59.825 55.000 22.88 0.00 43.74 3.67
4860 7863 1.435925 CGGGACCACGATGATCGAA 59.564 57.895 22.88 0.00 43.74 3.71
4862 7865 2.027605 CCGGGACCACGATGATCG 59.972 66.667 14.01 14.01 46.93 3.69
4881 7884 2.095461 GGAAGGAGTGATTTTCTGGCC 58.905 52.381 0.00 0.00 0.00 5.36
4893 7896 0.326618 ACCGATGATGGGGAAGGAGT 60.327 55.000 0.00 0.00 0.00 3.85
4949 7953 2.537714 ATCCTCTCCTTCCCACGGCT 62.538 60.000 0.00 0.00 0.00 5.52
4996 8000 4.842091 GCAGCAGCCGCCATTTCG 62.842 66.667 0.00 0.00 39.83 3.46
5034 8051 4.161295 CGCGGATGGCTTCCTCCA 62.161 66.667 16.47 0.00 42.99 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.