Multiple sequence alignment - TraesCS2D01G538900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G538900 chr2D 100.000 4672 0 0 1 4672 619662455 619667126 0.000000e+00 8628.0
1 TraesCS2D01G538900 chr2D 88.795 1767 160 29 1963 3711 619702436 619704182 0.000000e+00 2132.0
2 TraesCS2D01G538900 chr2D 85.049 1331 186 7 640 1962 619701055 619702380 0.000000e+00 1343.0
3 TraesCS2D01G538900 chr2D 98.006 351 6 1 1 351 619654272 619654621 4.000000e-170 608.0
4 TraesCS2D01G538900 chr2D 94.257 296 16 1 352 647 107869521 107869227 7.130000e-123 451.0
5 TraesCS2D01G538900 chr2D 80.208 96 18 1 1868 1962 585687836 585687741 2.330000e-08 71.3
6 TraesCS2D01G538900 chr2A 87.199 3117 325 43 640 3708 751231793 751234883 0.000000e+00 3478.0
7 TraesCS2D01G538900 chr2A 93.029 1750 109 11 1966 3711 751208953 751210693 0.000000e+00 2543.0
8 TraesCS2D01G538900 chr2A 88.851 1767 162 24 1963 3712 751238324 751240072 0.000000e+00 2139.0
9 TraesCS2D01G538900 chr2A 88.795 1767 162 25 1963 3712 751268711 751270458 0.000000e+00 2134.0
10 TraesCS2D01G538900 chr2A 91.994 1324 93 5 640 1962 751207574 751208885 0.000000e+00 1845.0
11 TraesCS2D01G538900 chr2A 86.186 1332 169 7 640 1962 751236943 751238268 0.000000e+00 1426.0
12 TraesCS2D01G538900 chr2A 86.186 1332 169 7 640 1962 751267330 751268655 0.000000e+00 1426.0
13 TraesCS2D01G538900 chr2A 86.111 1332 170 7 640 1962 751288256 751289581 0.000000e+00 1421.0
14 TraesCS2D01G538900 chr2A 88.757 676 35 18 3958 4621 751210940 751211586 0.000000e+00 789.0
15 TraesCS2D01G538900 chr2A 88.125 160 19 0 3729 3888 751235063 751235222 1.720000e-44 191.0
16 TraesCS2D01G538900 chr2A 95.918 49 1 1 4624 4672 751211741 751211788 1.390000e-10 78.7
17 TraesCS2D01G538900 chr2B 93.257 1750 106 9 1966 3711 759346370 759348111 0.000000e+00 2567.0
18 TraesCS2D01G538900 chr2B 89.563 1763 153 21 1963 3710 759440609 759442355 0.000000e+00 2207.0
19 TraesCS2D01G538900 chr2B 91.843 1324 98 3 640 1962 759344988 759346302 0.000000e+00 1838.0
20 TraesCS2D01G538900 chr2B 83.023 1773 229 48 1964 3711 706923743 706922018 0.000000e+00 1541.0
21 TraesCS2D01G538900 chr2B 82.957 1772 230 49 1964 3711 706731806 706730083 0.000000e+00 1533.0
22 TraesCS2D01G538900 chr2B 85.575 1331 178 8 640 1962 759439230 759440554 0.000000e+00 1382.0
23 TraesCS2D01G538900 chr2B 90.162 681 32 12 3948 4621 759348351 759349003 0.000000e+00 854.0
24 TraesCS2D01G538900 chr2B 96.181 288 11 0 352 639 794746939 794747226 5.470000e-129 472.0
25 TraesCS2D01G538900 chr2B 94.464 289 14 2 352 639 28872208 28872495 1.190000e-120 444.0
26 TraesCS2D01G538900 chr2B 96.104 77 1 1 3886 3960 159251532 159251608 1.770000e-24 124.0
27 TraesCS2D01G538900 chr2B 90.123 81 6 1 3885 3963 159251610 159251530 2.300000e-18 104.0
28 TraesCS2D01G538900 chr2B 80.672 119 22 1 1845 1962 706923757 706923639 1.790000e-14 91.6
29 TraesCS2D01G538900 chr2B 97.436 39 1 0 3729 3767 759442534 759442572 3.020000e-07 67.6
30 TraesCS2D01G538900 chrUn 86.111 1332 170 7 640 1962 337511629 337512954 0.000000e+00 1421.0
31 TraesCS2D01G538900 chr3D 98.305 354 5 1 1 354 108712822 108713174 1.850000e-173 619.0
32 TraesCS2D01G538900 chr3D 94.828 290 15 0 351 640 536922374 536922085 1.980000e-123 453.0
33 TraesCS2D01G538900 chr7D 98.300 353 5 1 1 353 472395255 472395606 6.640000e-173 617.0
34 TraesCS2D01G538900 chr4D 98.295 352 6 0 1 352 255906518 255906167 6.640000e-173 617.0
35 TraesCS2D01G538900 chr4D 98.011 352 6 1 1 351 255914569 255914218 1.110000e-170 610.0
36 TraesCS2D01G538900 chr4D 94.444 288 16 0 352 639 455275303 455275590 1.190000e-120 444.0
37 TraesCS2D01G538900 chr5D 98.011 352 6 1 1 351 39085703 39086054 1.110000e-170 610.0
38 TraesCS2D01G538900 chr5D 98.011 352 6 1 1 351 450973698 450973347 1.110000e-170 610.0
39 TraesCS2D01G538900 chr1D 98.006 351 7 0 1 351 42074346 42074696 1.110000e-170 610.0
40 TraesCS2D01G538900 chr1D 94.774 287 15 0 354 640 22465545 22465259 9.220000e-122 448.0
41 TraesCS2D01G538900 chr1D 92.771 83 2 3 3880 3961 8284226 8284305 2.950000e-22 117.0
42 TraesCS2D01G538900 chr6D 98.006 351 6 1 1 351 388637999 388637650 4.000000e-170 608.0
43 TraesCS2D01G538900 chr6D 93.902 82 1 2 3882 3960 309955303 309955223 2.280000e-23 121.0
44 TraesCS2D01G538900 chr6B 95.486 288 13 0 352 639 704787590 704787877 1.180000e-125 460.0
45 TraesCS2D01G538900 chr7B 94.792 288 15 0 352 639 525928712 525928425 2.560000e-122 449.0
46 TraesCS2D01G538900 chr7B 94.444 288 16 0 352 639 732787790 732787503 1.190000e-120 444.0
47 TraesCS2D01G538900 chr3B 97.500 80 2 0 3882 3961 349269362 349269441 2.270000e-28 137.0
48 TraesCS2D01G538900 chr3A 92.222 90 4 2 3884 3971 430526427 430526515 1.770000e-24 124.0
49 TraesCS2D01G538900 chr1B 92.771 83 2 2 3882 3960 589766215 589766297 2.950000e-22 117.0
50 TraesCS2D01G538900 chr5B 93.506 77 5 0 3886 3962 315165352 315165276 1.060000e-21 115.0
51 TraesCS2D01G538900 chr7A 93.333 75 4 1 3883 3957 638872515 638872588 4.940000e-20 110.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G538900 chr2D 619662455 619667126 4671 False 8628.000000 8628 100.00000 1 4672 1 chr2D.!!$F2 4671
1 TraesCS2D01G538900 chr2D 619701055 619704182 3127 False 1737.500000 2132 86.92200 640 3711 2 chr2D.!!$F3 3071
2 TraesCS2D01G538900 chr2A 751231793 751240072 8279 False 1808.500000 3478 87.59025 640 3888 4 chr2A.!!$F3 3248
3 TraesCS2D01G538900 chr2A 751267330 751270458 3128 False 1780.000000 2134 87.49050 640 3712 2 chr2A.!!$F4 3072
4 TraesCS2D01G538900 chr2A 751288256 751289581 1325 False 1421.000000 1421 86.11100 640 1962 1 chr2A.!!$F1 1322
5 TraesCS2D01G538900 chr2A 751207574 751211788 4214 False 1313.925000 2543 92.42450 640 4672 4 chr2A.!!$F2 4032
6 TraesCS2D01G538900 chr2B 759344988 759349003 4015 False 1753.000000 2567 91.75400 640 4621 3 chr2B.!!$F4 3981
7 TraesCS2D01G538900 chr2B 706730083 706731806 1723 True 1533.000000 1533 82.95700 1964 3711 1 chr2B.!!$R2 1747
8 TraesCS2D01G538900 chr2B 759439230 759442572 3342 False 1218.866667 2207 90.85800 640 3767 3 chr2B.!!$F5 3127
9 TraesCS2D01G538900 chr2B 706922018 706923757 1739 True 816.300000 1541 81.84750 1845 3711 2 chr2B.!!$R3 1866
10 TraesCS2D01G538900 chrUn 337511629 337512954 1325 False 1421.000000 1421 86.11100 640 1962 1 chrUn.!!$F1 1322

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
631 632 0.036765 AAAACATCGCACGGGAGCTA 60.037 50.0 0.00 0.0 0.00 3.32 F
1461 5974 0.108585 TCAGTGGGTTTGAGCCTGAC 59.891 55.0 0.00 0.0 36.53 3.51 F
2062 6654 0.240411 CTGCAGTTGCCAAAGAGAGC 59.760 55.0 5.25 0.0 41.18 4.09 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1485 5998 1.781786 TCAGATCCTCCTTTCTCCGG 58.218 55.000 0.0 0.0 0.00 5.14 R
3133 7746 2.000447 GGAGACATGTAACCGCTGTTC 59.000 52.381 0.0 0.0 35.87 3.18 R
3821 8597 1.615392 GCACAGCCCAGAGAAAACATT 59.385 47.619 0.0 0.0 0.00 2.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 4.814224 AATAGGTCACAGCCCCAAATAT 57.186 40.909 0.00 0.00 0.00 1.28
32 33 3.473113 AGGTCACAGCCCCAAATATTT 57.527 42.857 0.00 0.00 0.00 1.40
34 35 2.099098 GGTCACAGCCCCAAATATTTCG 59.901 50.000 0.00 0.00 0.00 3.46
35 36 2.099098 GTCACAGCCCCAAATATTTCGG 59.901 50.000 4.94 4.94 0.00 4.30
36 37 1.111277 ACAGCCCCAAATATTTCGGC 58.889 50.000 21.03 21.03 40.03 5.54
39 40 1.111277 GCCCCAAATATTTCGGCACT 58.889 50.000 22.63 0.00 39.50 4.40
40 41 1.480545 GCCCCAAATATTTCGGCACTT 59.519 47.619 22.63 0.00 39.50 3.16
41 42 2.093711 GCCCCAAATATTTCGGCACTTT 60.094 45.455 22.63 0.00 39.50 2.66
42 43 3.131400 GCCCCAAATATTTCGGCACTTTA 59.869 43.478 22.63 0.00 39.50 1.85
43 44 4.382147 GCCCCAAATATTTCGGCACTTTAA 60.382 41.667 22.63 0.00 39.50 1.52
44 45 5.725362 CCCCAAATATTTCGGCACTTTAAA 58.275 37.500 6.33 0.00 0.00 1.52
45 46 6.345298 CCCCAAATATTTCGGCACTTTAAAT 58.655 36.000 6.33 0.00 0.00 1.40
46 47 7.493367 CCCCAAATATTTCGGCACTTTAAATA 58.507 34.615 6.33 0.00 31.60 1.40
48 49 9.372369 CCCAAATATTTCGGCACTTTAAATAAA 57.628 29.630 0.00 0.00 31.03 1.40
124 125 7.192148 TCGCTGTTTTAGTTTATTTAGTGCA 57.808 32.000 0.00 0.00 0.00 4.57
125 126 7.812648 TCGCTGTTTTAGTTTATTTAGTGCAT 58.187 30.769 0.00 0.00 0.00 3.96
162 163 8.842358 ATTAAAAGTCGATTTCTTCACCTACA 57.158 30.769 0.00 0.00 0.00 2.74
163 164 8.842358 TTAAAAGTCGATTTCTTCACCTACAT 57.158 30.769 0.00 0.00 0.00 2.29
166 167 8.842358 AAAGTCGATTTCTTCACCTACATTTA 57.158 30.769 0.00 0.00 0.00 1.40
168 169 9.449719 AAGTCGATTTCTTCACCTACATTTATT 57.550 29.630 0.00 0.00 0.00 1.40
194 195 8.821686 ATGGATTATTTGACACATTAGGAACA 57.178 30.769 0.00 0.00 0.00 3.18
195 196 8.642935 TGGATTATTTGACACATTAGGAACAA 57.357 30.769 0.00 0.00 0.00 2.83
205 206 9.743057 TGACACATTAGGAACAATTTAGTTTTG 57.257 29.630 0.00 0.00 0.00 2.44
207 208 9.744468 ACACATTAGGAACAATTTAGTTTTGAC 57.256 29.630 0.00 0.00 0.00 3.18
208 209 9.965824 CACATTAGGAACAATTTAGTTTTGACT 57.034 29.630 0.00 0.00 0.00 3.41
214 215 9.936759 AGGAACAATTTAGTTTTGACTTTTGAA 57.063 25.926 0.00 0.00 0.00 2.69
266 267 9.964303 CAAATATGAATTTGGATCGGTTATGAA 57.036 29.630 3.45 0.00 45.49 2.57
267 268 9.965824 AAATATGAATTTGGATCGGTTATGAAC 57.034 29.630 0.00 0.00 33.97 3.18
268 269 8.924511 ATATGAATTTGGATCGGTTATGAACT 57.075 30.769 0.00 0.00 0.00 3.01
270 271 8.746052 ATGAATTTGGATCGGTTATGAACTAA 57.254 30.769 0.00 0.00 0.00 2.24
271 272 7.981142 TGAATTTGGATCGGTTATGAACTAAC 58.019 34.615 0.00 0.00 39.25 2.34
272 273 6.598753 ATTTGGATCGGTTATGAACTAACG 57.401 37.500 0.00 0.00 40.62 3.18
274 275 2.470257 GGATCGGTTATGAACTAACGCG 59.530 50.000 3.53 3.53 40.62 6.01
275 276 2.917701 TCGGTTATGAACTAACGCGA 57.082 45.000 15.93 0.00 40.62 5.87
277 278 2.419673 TCGGTTATGAACTAACGCGAGA 59.580 45.455 15.93 0.00 40.62 4.04
279 280 3.795101 CGGTTATGAACTAACGCGAGATT 59.205 43.478 15.93 0.00 40.62 2.40
280 281 4.971830 CGGTTATGAACTAACGCGAGATTA 59.028 41.667 15.93 0.00 40.62 1.75
281 282 5.115171 CGGTTATGAACTAACGCGAGATTAG 59.885 44.000 15.93 13.42 40.62 1.73
282 283 5.107951 GGTTATGAACTAACGCGAGATTAGC 60.108 44.000 15.93 0.00 40.62 3.09
285 286 3.611113 TGAACTAACGCGAGATTAGCAAC 59.389 43.478 15.93 6.43 33.66 4.17
286 287 3.226346 ACTAACGCGAGATTAGCAACA 57.774 42.857 15.93 0.00 33.66 3.33
288 289 2.080286 AACGCGAGATTAGCAACAGT 57.920 45.000 15.93 0.00 34.19 3.55
290 291 3.226346 ACGCGAGATTAGCAACAGTAA 57.774 42.857 15.93 0.00 34.19 2.24
291 292 3.581755 ACGCGAGATTAGCAACAGTAAA 58.418 40.909 15.93 0.00 34.19 2.01
292 293 3.367025 ACGCGAGATTAGCAACAGTAAAC 59.633 43.478 15.93 0.00 34.19 2.01
293 294 3.539592 CGCGAGATTAGCAACAGTAAACG 60.540 47.826 0.00 0.00 34.19 3.60
294 295 3.241995 GCGAGATTAGCAACAGTAAACGG 60.242 47.826 0.00 0.00 34.19 4.44
295 296 3.306166 CGAGATTAGCAACAGTAAACGGG 59.694 47.826 0.00 0.00 0.00 5.28
296 297 3.606687 AGATTAGCAACAGTAAACGGGG 58.393 45.455 0.00 0.00 0.00 5.73
297 298 2.934886 TTAGCAACAGTAAACGGGGT 57.065 45.000 0.00 0.00 0.00 4.95
298 299 2.172851 TAGCAACAGTAAACGGGGTG 57.827 50.000 0.00 0.00 0.00 4.61
299 300 0.470766 AGCAACAGTAAACGGGGTGA 59.529 50.000 0.00 0.00 0.00 4.02
300 301 0.589708 GCAACAGTAAACGGGGTGAC 59.410 55.000 0.00 0.00 0.00 3.67
301 302 1.956297 CAACAGTAAACGGGGTGACA 58.044 50.000 0.00 0.00 0.00 3.58
302 303 2.500229 CAACAGTAAACGGGGTGACAT 58.500 47.619 0.00 0.00 0.00 3.06
304 305 1.271163 ACAGTAAACGGGGTGACATGG 60.271 52.381 0.00 0.00 0.00 3.66
305 306 0.322187 AGTAAACGGGGTGACATGGC 60.322 55.000 0.00 0.00 0.00 4.40
306 307 0.606944 GTAAACGGGGTGACATGGCA 60.607 55.000 0.00 0.00 0.00 4.92
308 309 0.965363 AAACGGGGTGACATGGCATC 60.965 55.000 3.50 2.73 0.00 3.91
309 310 2.896854 CGGGGTGACATGGCATCG 60.897 66.667 3.50 5.99 0.00 3.84
310 311 2.272146 GGGGTGACATGGCATCGT 59.728 61.111 3.50 0.00 0.00 3.73
311 312 1.378514 GGGGTGACATGGCATCGTT 60.379 57.895 3.50 0.00 0.00 3.85
313 314 1.680555 GGGGTGACATGGCATCGTTAA 60.681 52.381 3.50 0.00 0.00 2.01
314 315 1.400494 GGGTGACATGGCATCGTTAAC 59.600 52.381 3.50 0.00 0.00 2.01
315 316 1.062002 GGTGACATGGCATCGTTAACG 59.938 52.381 21.85 21.85 41.45 3.18
316 317 1.730064 GTGACATGGCATCGTTAACGT 59.270 47.619 25.98 11.94 40.80 3.99
317 318 1.729517 TGACATGGCATCGTTAACGTG 59.270 47.619 25.98 22.24 40.80 4.49
318 319 1.062002 GACATGGCATCGTTAACGTGG 59.938 52.381 25.98 19.51 40.80 4.94
319 320 0.376852 CATGGCATCGTTAACGTGGG 59.623 55.000 25.98 17.27 40.80 4.61
320 321 0.250793 ATGGCATCGTTAACGTGGGA 59.749 50.000 25.98 8.70 40.80 4.37
322 323 1.339247 TGGCATCGTTAACGTGGGATT 60.339 47.619 25.98 4.55 40.80 3.01
325 326 3.192466 GCATCGTTAACGTGGGATTACT 58.808 45.455 25.98 0.57 40.80 2.24
326 327 3.000925 GCATCGTTAACGTGGGATTACTG 59.999 47.826 25.98 11.92 40.80 2.74
327 328 3.940209 TCGTTAACGTGGGATTACTGT 57.060 42.857 25.98 0.00 40.80 3.55
328 329 5.342433 CATCGTTAACGTGGGATTACTGTA 58.658 41.667 25.98 3.87 40.80 2.74
329 330 4.985413 TCGTTAACGTGGGATTACTGTAG 58.015 43.478 25.98 0.00 40.80 2.74
331 332 4.676196 CGTTAACGTGGGATTACTGTAGCT 60.676 45.833 19.75 0.00 34.11 3.32
333 334 6.332630 GTTAACGTGGGATTACTGTAGCTTA 58.667 40.000 0.00 0.00 0.00 3.09
334 335 5.410355 AACGTGGGATTACTGTAGCTTAA 57.590 39.130 0.00 0.00 0.00 1.85
335 336 5.609533 ACGTGGGATTACTGTAGCTTAAT 57.390 39.130 0.00 0.00 0.00 1.40
336 337 5.985911 ACGTGGGATTACTGTAGCTTAATT 58.014 37.500 0.00 0.00 0.00 1.40
338 339 7.732996 ACGTGGGATTACTGTAGCTTAATTAT 58.267 34.615 0.00 0.00 0.00 1.28
340 341 7.331193 CGTGGGATTACTGTAGCTTAATTATCC 59.669 40.741 0.00 0.00 0.00 2.59
341 342 7.331193 GTGGGATTACTGTAGCTTAATTATCCG 59.669 40.741 0.00 0.00 31.87 4.18
343 344 6.817140 GGATTACTGTAGCTTAATTATCCGGG 59.183 42.308 0.00 0.00 0.00 5.73
345 346 2.993899 CTGTAGCTTAATTATCCGGGCG 59.006 50.000 0.00 0.00 0.00 6.13
347 348 2.165319 AGCTTAATTATCCGGGCGTC 57.835 50.000 0.00 0.00 0.00 5.19
349 350 1.529865 GCTTAATTATCCGGGCGTCAC 59.470 52.381 0.00 0.00 0.00 3.67
350 351 2.828877 CTTAATTATCCGGGCGTCACA 58.171 47.619 0.00 0.00 0.00 3.58
351 352 2.519377 TAATTATCCGGGCGTCACAG 57.481 50.000 0.00 0.00 0.00 3.66
353 354 2.971428 ATTATCCGGGCGTCACAGCG 62.971 60.000 0.00 0.00 38.18 5.18
397 398 4.148825 GGGTCGAGGCACGCTGAT 62.149 66.667 0.00 0.00 42.26 2.90
399 400 2.181777 GTCGAGGCACGCTGATGA 59.818 61.111 0.00 0.00 42.26 2.92
400 401 1.875813 GTCGAGGCACGCTGATGAG 60.876 63.158 0.00 0.00 42.26 2.90
402 403 2.125391 GAGGCACGCTGATGAGCA 60.125 61.111 4.68 0.00 46.62 4.26
403 404 2.435586 AGGCACGCTGATGAGCAC 60.436 61.111 4.68 0.00 46.62 4.40
404 405 3.857854 GGCACGCTGATGAGCACG 61.858 66.667 4.68 0.00 46.62 5.34
405 406 3.857854 GCACGCTGATGAGCACGG 61.858 66.667 4.68 0.00 46.62 4.94
409 410 2.515523 GCTGATGAGCACGGGCAT 60.516 61.111 14.57 0.00 45.46 4.40
410 411 2.831366 GCTGATGAGCACGGGCATG 61.831 63.158 14.57 0.00 45.46 4.06
411 412 2.825387 TGATGAGCACGGGCATGC 60.825 61.111 14.57 9.90 46.50 4.06
417 418 3.673484 GCACGGGCATGCTTGTGT 61.673 61.111 29.86 17.33 42.62 3.72
418 419 2.256158 CACGGGCATGCTTGTGTG 59.744 61.111 25.08 19.83 0.00 3.82
420 421 2.672651 CGGGCATGCTTGTGTGGA 60.673 61.111 18.92 0.00 0.00 4.02
421 422 2.048023 CGGGCATGCTTGTGTGGAT 61.048 57.895 18.92 0.00 0.00 3.41
423 424 1.473258 GGGCATGCTTGTGTGGATAA 58.527 50.000 18.92 0.00 0.00 1.75
424 425 1.406539 GGGCATGCTTGTGTGGATAAG 59.593 52.381 18.92 0.00 0.00 1.73
425 426 2.094675 GGCATGCTTGTGTGGATAAGT 58.905 47.619 18.92 0.00 0.00 2.24
426 427 2.493278 GGCATGCTTGTGTGGATAAGTT 59.507 45.455 18.92 0.00 0.00 2.66
427 428 3.504863 GCATGCTTGTGTGGATAAGTTG 58.495 45.455 11.37 0.00 0.00 3.16
428 429 3.057315 GCATGCTTGTGTGGATAAGTTGT 60.057 43.478 11.37 0.00 0.00 3.32
429 430 4.478699 CATGCTTGTGTGGATAAGTTGTG 58.521 43.478 0.00 0.00 0.00 3.33
430 431 2.884012 TGCTTGTGTGGATAAGTTGTGG 59.116 45.455 0.00 0.00 0.00 4.17
431 432 2.228822 GCTTGTGTGGATAAGTTGTGGG 59.771 50.000 0.00 0.00 0.00 4.61
432 433 3.486383 CTTGTGTGGATAAGTTGTGGGT 58.514 45.455 0.00 0.00 0.00 4.51
433 434 3.134574 TGTGTGGATAAGTTGTGGGTC 57.865 47.619 0.00 0.00 0.00 4.46
434 435 2.224670 TGTGTGGATAAGTTGTGGGTCC 60.225 50.000 0.00 0.00 0.00 4.46
436 437 1.353022 GTGGATAAGTTGTGGGTCCCA 59.647 52.381 6.47 6.47 0.00 4.37
450 451 4.155733 CCCACCCGCATGCGAGTA 62.156 66.667 39.90 0.00 42.83 2.59
461 462 2.184579 GCGAGTAGCTGGTGGGTC 59.815 66.667 0.00 0.00 44.04 4.46
462 463 2.893398 CGAGTAGCTGGTGGGTCC 59.107 66.667 0.00 0.00 0.00 4.46
463 464 2.722201 CGAGTAGCTGGTGGGTCCC 61.722 68.421 0.00 0.00 34.77 4.46
464 465 2.683933 AGTAGCTGGTGGGTCCCG 60.684 66.667 2.65 0.00 34.77 5.14
472 473 4.388499 GTGGGTCCCGCGTGTCAT 62.388 66.667 5.50 0.00 0.00 3.06
474 475 2.284276 TGGGTCCCGCGTGTCATAA 61.284 57.895 4.92 0.00 0.00 1.90
475 476 1.812507 GGGTCCCGCGTGTCATAAC 60.813 63.158 4.92 0.00 0.00 1.89
476 477 1.217244 GGTCCCGCGTGTCATAACT 59.783 57.895 4.92 0.00 0.00 2.24
477 478 0.804933 GGTCCCGCGTGTCATAACTC 60.805 60.000 4.92 0.00 0.00 3.01
479 480 0.604073 TCCCGCGTGTCATAACTCAA 59.396 50.000 4.92 0.00 0.00 3.02
480 481 1.001068 TCCCGCGTGTCATAACTCAAA 59.999 47.619 4.92 0.00 0.00 2.69
481 482 2.006888 CCCGCGTGTCATAACTCAAAT 58.993 47.619 4.92 0.00 0.00 2.32
482 483 2.030457 CCCGCGTGTCATAACTCAAATC 59.970 50.000 4.92 0.00 0.00 2.17
485 486 2.348666 GCGTGTCATAACTCAAATCGCT 59.651 45.455 0.00 0.00 38.46 4.93
486 487 3.550275 GCGTGTCATAACTCAAATCGCTA 59.450 43.478 0.00 0.00 38.46 4.26
487 488 4.032445 GCGTGTCATAACTCAAATCGCTAA 59.968 41.667 0.00 0.00 38.46 3.09
488 489 5.481472 CGTGTCATAACTCAAATCGCTAAC 58.519 41.667 0.00 0.00 0.00 2.34
489 490 5.500290 CGTGTCATAACTCAAATCGCTAACC 60.500 44.000 0.00 0.00 0.00 2.85
490 491 4.873827 TGTCATAACTCAAATCGCTAACCC 59.126 41.667 0.00 0.00 0.00 4.11
491 492 4.272748 GTCATAACTCAAATCGCTAACCCC 59.727 45.833 0.00 0.00 0.00 4.95
492 493 4.163458 TCATAACTCAAATCGCTAACCCCT 59.837 41.667 0.00 0.00 0.00 4.79
493 494 3.434940 AACTCAAATCGCTAACCCCTT 57.565 42.857 0.00 0.00 0.00 3.95
495 496 2.039879 ACTCAAATCGCTAACCCCTTGT 59.960 45.455 0.00 0.00 0.00 3.16
496 497 2.420022 CTCAAATCGCTAACCCCTTGTG 59.580 50.000 0.00 0.00 0.00 3.33
497 498 2.159382 CAAATCGCTAACCCCTTGTGT 58.841 47.619 0.00 0.00 0.00 3.72
498 499 2.556622 CAAATCGCTAACCCCTTGTGTT 59.443 45.455 0.00 0.00 0.00 3.32
499 500 2.579410 ATCGCTAACCCCTTGTGTTT 57.421 45.000 0.00 0.00 0.00 2.83
500 501 2.351706 TCGCTAACCCCTTGTGTTTT 57.648 45.000 0.00 0.00 0.00 2.43
502 503 2.619646 TCGCTAACCCCTTGTGTTTTTC 59.380 45.455 0.00 0.00 0.00 2.29
503 504 2.359531 CGCTAACCCCTTGTGTTTTTCA 59.640 45.455 0.00 0.00 0.00 2.69
504 505 3.005367 CGCTAACCCCTTGTGTTTTTCAT 59.995 43.478 0.00 0.00 0.00 2.57
506 507 5.364778 GCTAACCCCTTGTGTTTTTCATTT 58.635 37.500 0.00 0.00 0.00 2.32
507 508 5.465390 GCTAACCCCTTGTGTTTTTCATTTC 59.535 40.000 0.00 0.00 0.00 2.17
508 509 5.428184 AACCCCTTGTGTTTTTCATTTCA 57.572 34.783 0.00 0.00 0.00 2.69
509 510 4.765273 ACCCCTTGTGTTTTTCATTTCAC 58.235 39.130 0.00 0.00 0.00 3.18
510 511 3.801594 CCCCTTGTGTTTTTCATTTCACG 59.198 43.478 0.00 0.00 34.08 4.35
512 513 4.429108 CCTTGTGTTTTTCATTTCACGGT 58.571 39.130 0.00 0.00 34.08 4.83
514 515 6.037098 CCTTGTGTTTTTCATTTCACGGTTA 58.963 36.000 0.00 0.00 34.08 2.85
515 516 6.531948 CCTTGTGTTTTTCATTTCACGGTTAA 59.468 34.615 0.00 0.00 34.08 2.01
517 518 7.279470 TGTGTTTTTCATTTCACGGTTAAAC 57.721 32.000 0.00 0.00 34.08 2.01
518 519 6.866770 TGTGTTTTTCATTTCACGGTTAAACA 59.133 30.769 0.00 0.00 33.39 2.83
520 521 7.273815 GTGTTTTTCATTTCACGGTTAAACAGA 59.726 33.333 0.00 0.00 35.63 3.41
521 522 7.486551 TGTTTTTCATTTCACGGTTAAACAGAG 59.513 33.333 0.00 0.00 32.42 3.35
524 525 2.623878 TTCACGGTTAAACAGAGCCA 57.376 45.000 0.00 0.00 0.00 4.75
527 528 2.151202 CACGGTTAAACAGAGCCATGT 58.849 47.619 0.00 0.00 33.96 3.21
529 530 1.393539 CGGTTAAACAGAGCCATGTCG 59.606 52.381 0.00 0.00 31.50 4.35
530 531 1.130561 GGTTAAACAGAGCCATGTCGC 59.869 52.381 0.00 0.00 31.50 5.19
531 532 1.804151 GTTAAACAGAGCCATGTCGCA 59.196 47.619 0.00 0.00 31.50 5.10
533 534 1.538047 AAACAGAGCCATGTCGCATT 58.462 45.000 0.00 0.00 31.50 3.56
534 535 0.806868 AACAGAGCCATGTCGCATTG 59.193 50.000 0.00 0.00 31.50 2.82
535 536 1.028330 ACAGAGCCATGTCGCATTGG 61.028 55.000 0.00 0.00 36.03 3.16
537 538 0.463295 AGAGCCATGTCGCATTGGAG 60.463 55.000 0.00 0.00 34.81 3.86
538 539 2.056481 GAGCCATGTCGCATTGGAGC 62.056 60.000 0.00 0.00 34.81 4.70
539 540 2.117156 GCCATGTCGCATTGGAGCT 61.117 57.895 0.00 0.00 34.81 4.09
540 541 0.815213 GCCATGTCGCATTGGAGCTA 60.815 55.000 0.00 0.00 34.81 3.32
541 542 1.888215 CCATGTCGCATTGGAGCTAT 58.112 50.000 0.00 0.00 34.81 2.97
542 543 2.224606 CCATGTCGCATTGGAGCTATT 58.775 47.619 0.00 0.00 34.81 1.73
543 544 3.402110 CCATGTCGCATTGGAGCTATTA 58.598 45.455 0.00 0.00 34.81 0.98
544 545 4.005650 CCATGTCGCATTGGAGCTATTAT 58.994 43.478 0.00 0.00 34.81 1.28
545 546 4.456911 CCATGTCGCATTGGAGCTATTATT 59.543 41.667 0.00 0.00 34.81 1.40
546 547 5.388111 CATGTCGCATTGGAGCTATTATTG 58.612 41.667 0.00 0.00 0.00 1.90
548 549 2.813754 TCGCATTGGAGCTATTATTGGC 59.186 45.455 0.00 0.00 0.00 4.52
549 550 2.816087 CGCATTGGAGCTATTATTGGCT 59.184 45.455 0.00 0.00 43.20 4.75
550 551 3.254166 CGCATTGGAGCTATTATTGGCTT 59.746 43.478 0.00 0.00 40.17 4.35
552 553 4.614535 GCATTGGAGCTATTATTGGCTTCG 60.615 45.833 0.00 0.00 40.17 3.79
554 555 4.415881 TGGAGCTATTATTGGCTTCGAA 57.584 40.909 0.00 0.00 40.17 3.71
555 556 4.776349 TGGAGCTATTATTGGCTTCGAAA 58.224 39.130 0.00 0.00 40.17 3.46
557 558 5.065988 TGGAGCTATTATTGGCTTCGAAAAC 59.934 40.000 0.00 0.00 40.17 2.43
559 560 4.634443 AGCTATTATTGGCTTCGAAAACGT 59.366 37.500 0.00 0.00 36.00 3.99
561 562 5.446741 GCTATTATTGGCTTCGAAAACGTCA 60.447 40.000 0.00 0.00 0.00 4.35
563 564 1.370609 TTGGCTTCGAAAACGTCACA 58.629 45.000 0.00 0.00 0.00 3.58
564 565 1.588674 TGGCTTCGAAAACGTCACAT 58.411 45.000 0.00 0.00 0.00 3.21
565 566 1.529438 TGGCTTCGAAAACGTCACATC 59.471 47.619 0.00 0.00 0.00 3.06
566 567 1.529438 GGCTTCGAAAACGTCACATCA 59.471 47.619 0.00 0.00 0.00 3.07
569 570 3.659444 GCTTCGAAAACGTCACATCAAAG 59.341 43.478 0.00 0.00 0.00 2.77
570 571 3.247563 TCGAAAACGTCACATCAAAGC 57.752 42.857 0.00 0.00 0.00 3.51
571 572 2.032377 TCGAAAACGTCACATCAAAGCC 60.032 45.455 0.00 0.00 0.00 4.35
572 573 2.286713 CGAAAACGTCACATCAAAGCCA 60.287 45.455 0.00 0.00 0.00 4.75
574 575 4.298332 GAAAACGTCACATCAAAGCCATT 58.702 39.130 0.00 0.00 0.00 3.16
575 576 3.559238 AACGTCACATCAAAGCCATTC 57.441 42.857 0.00 0.00 0.00 2.67
576 577 2.503331 ACGTCACATCAAAGCCATTCA 58.497 42.857 0.00 0.00 0.00 2.57
577 578 3.084039 ACGTCACATCAAAGCCATTCAT 58.916 40.909 0.00 0.00 0.00 2.57
578 579 3.507233 ACGTCACATCAAAGCCATTCATT 59.493 39.130 0.00 0.00 0.00 2.57
579 580 4.100529 CGTCACATCAAAGCCATTCATTC 58.899 43.478 0.00 0.00 0.00 2.67
581 582 4.009002 TCACATCAAAGCCATTCATTCGA 58.991 39.130 0.00 0.00 0.00 3.71
582 583 4.458642 TCACATCAAAGCCATTCATTCGAA 59.541 37.500 0.00 0.00 35.05 3.71
583 584 4.560035 CACATCAAAGCCATTCATTCGAAC 59.440 41.667 0.00 0.00 32.81 3.95
584 585 4.460382 ACATCAAAGCCATTCATTCGAACT 59.540 37.500 0.00 0.00 32.81 3.01
585 586 5.647658 ACATCAAAGCCATTCATTCGAACTA 59.352 36.000 0.00 0.00 32.81 2.24
586 587 5.545658 TCAAAGCCATTCATTCGAACTAC 57.454 39.130 0.00 0.00 32.81 2.73
588 589 5.647658 TCAAAGCCATTCATTCGAACTACAT 59.352 36.000 0.00 0.00 32.81 2.29
589 590 5.741388 AAGCCATTCATTCGAACTACATC 57.259 39.130 0.00 0.00 32.81 3.06
590 591 3.804325 AGCCATTCATTCGAACTACATCG 59.196 43.478 0.00 0.00 44.04 3.84
591 592 3.604772 GCCATTCATTCGAACTACATCGC 60.605 47.826 0.00 0.00 42.44 4.58
592 593 3.555547 CCATTCATTCGAACTACATCGCA 59.444 43.478 0.00 0.00 42.44 5.10
593 594 4.508971 CATTCATTCGAACTACATCGCAC 58.491 43.478 0.00 0.00 42.44 5.34
594 595 3.503827 TCATTCGAACTACATCGCACT 57.496 42.857 0.00 0.00 42.44 4.40
595 596 3.435566 TCATTCGAACTACATCGCACTC 58.564 45.455 0.00 0.00 42.44 3.51
596 597 2.273370 TTCGAACTACATCGCACTCC 57.727 50.000 0.00 0.00 42.44 3.85
597 598 1.460504 TCGAACTACATCGCACTCCT 58.539 50.000 0.00 0.00 42.44 3.69
598 599 1.816835 TCGAACTACATCGCACTCCTT 59.183 47.619 0.00 0.00 42.44 3.36
600 601 2.541556 GAACTACATCGCACTCCTTCC 58.458 52.381 0.00 0.00 0.00 3.46
601 602 1.557099 ACTACATCGCACTCCTTCCA 58.443 50.000 0.00 0.00 0.00 3.53
602 603 1.899814 ACTACATCGCACTCCTTCCAA 59.100 47.619 0.00 0.00 0.00 3.53
603 604 2.501723 ACTACATCGCACTCCTTCCAAT 59.498 45.455 0.00 0.00 0.00 3.16
604 605 2.496899 ACATCGCACTCCTTCCAATT 57.503 45.000 0.00 0.00 0.00 2.32
606 607 1.328680 CATCGCACTCCTTCCAATTCG 59.671 52.381 0.00 0.00 0.00 3.34
607 608 1.019278 TCGCACTCCTTCCAATTCGC 61.019 55.000 0.00 0.00 0.00 4.70
608 609 1.298157 CGCACTCCTTCCAATTCGCA 61.298 55.000 0.00 0.00 0.00 5.10
609 610 1.098050 GCACTCCTTCCAATTCGCAT 58.902 50.000 0.00 0.00 0.00 4.73
610 611 1.202222 GCACTCCTTCCAATTCGCATG 60.202 52.381 0.00 0.00 0.00 4.06
611 612 2.358957 CACTCCTTCCAATTCGCATGA 58.641 47.619 0.00 0.00 0.00 3.07
612 613 2.749076 CACTCCTTCCAATTCGCATGAA 59.251 45.455 0.00 0.00 38.76 2.57
613 614 3.191162 CACTCCTTCCAATTCGCATGAAA 59.809 43.478 0.00 0.00 37.71 2.69
615 616 4.280677 ACTCCTTCCAATTCGCATGAAAAA 59.719 37.500 0.00 0.00 37.71 1.94
616 617 4.555262 TCCTTCCAATTCGCATGAAAAAC 58.445 39.130 0.00 0.00 37.71 2.43
617 618 4.038522 TCCTTCCAATTCGCATGAAAAACA 59.961 37.500 0.00 0.00 37.71 2.83
618 619 4.931002 CCTTCCAATTCGCATGAAAAACAT 59.069 37.500 0.00 0.00 37.71 2.71
619 620 5.062558 CCTTCCAATTCGCATGAAAAACATC 59.937 40.000 0.00 0.00 37.71 3.06
620 621 4.165036 TCCAATTCGCATGAAAAACATCG 58.835 39.130 0.00 0.00 37.71 3.84
621 622 3.241741 CCAATTCGCATGAAAAACATCGC 60.242 43.478 0.00 0.00 37.71 4.58
622 623 2.695613 TTCGCATGAAAAACATCGCA 57.304 40.000 0.00 0.00 37.07 5.10
624 625 0.629767 CGCATGAAAAACATCGCACG 59.370 50.000 0.00 0.00 37.07 5.34
625 626 0.984109 GCATGAAAAACATCGCACGG 59.016 50.000 0.00 0.00 37.07 4.94
627 628 1.198867 CATGAAAAACATCGCACGGGA 59.801 47.619 0.00 0.00 37.07 5.14
628 629 0.871722 TGAAAAACATCGCACGGGAG 59.128 50.000 0.00 0.00 0.00 4.30
629 630 0.454452 GAAAAACATCGCACGGGAGC 60.454 55.000 0.00 0.00 0.00 4.70
630 631 0.889186 AAAAACATCGCACGGGAGCT 60.889 50.000 0.00 0.00 0.00 4.09
631 632 0.036765 AAAACATCGCACGGGAGCTA 60.037 50.000 0.00 0.00 0.00 3.32
632 633 0.178068 AAACATCGCACGGGAGCTAT 59.822 50.000 0.00 0.00 0.00 2.97
633 634 0.178068 AACATCGCACGGGAGCTATT 59.822 50.000 0.00 0.00 0.00 1.73
634 635 0.530650 ACATCGCACGGGAGCTATTG 60.531 55.000 0.00 0.00 0.00 1.90
635 636 1.069765 ATCGCACGGGAGCTATTGG 59.930 57.895 0.00 0.00 0.00 3.16
636 637 2.996168 ATCGCACGGGAGCTATTGGC 62.996 60.000 0.00 0.00 42.19 4.52
637 638 2.902343 GCACGGGAGCTATTGGCC 60.902 66.667 0.00 0.00 43.05 5.36
638 639 2.203209 CACGGGAGCTATTGGCCC 60.203 66.667 0.00 0.00 43.05 5.80
670 5182 2.489073 GGCTTCTTCTCCCCAAAGAACA 60.489 50.000 0.00 0.00 37.72 3.18
719 5232 1.237285 ACAACAACATCCCTGAGCGC 61.237 55.000 0.00 0.00 0.00 5.92
723 5236 1.672356 AACATCCCTGAGCGCACAC 60.672 57.895 11.47 0.51 0.00 3.82
801 5314 1.116308 TCTGACCAACAACTCCGACA 58.884 50.000 0.00 0.00 0.00 4.35
878 5391 3.961729 GGAACCACCGGAACTTCG 58.038 61.111 9.46 0.00 0.00 3.79
887 5400 1.325355 CCGGAACTTCGGCTATCCTA 58.675 55.000 0.00 0.00 43.71 2.94
891 5404 2.957006 GGAACTTCGGCTATCCTACTCA 59.043 50.000 0.00 0.00 0.00 3.41
953 5466 3.074094 ACATATGGCAGAGCTTCCATCAT 59.926 43.478 16.27 7.33 41.81 2.45
965 5478 2.385013 TCCATCATCCAACTGACACG 57.615 50.000 0.00 0.00 0.00 4.49
966 5479 1.066215 TCCATCATCCAACTGACACGG 60.066 52.381 0.00 0.00 0.00 4.94
967 5480 0.729116 CATCATCCAACTGACACGGC 59.271 55.000 0.00 0.00 0.00 5.68
983 5496 4.891037 GCCCTCCCCAGCATGCTC 62.891 72.222 19.68 0.00 31.97 4.26
1006 5519 1.627329 ACCACTGAGCACAGATGATGT 59.373 47.619 18.54 4.40 46.03 3.06
1023 5536 1.905637 TGTTCTCTACACTCGCCTCA 58.094 50.000 0.00 0.00 0.00 3.86
1037 5550 1.076485 CCTCATTGCTTGGAGGGGG 60.076 63.158 9.43 0.00 45.62 5.40
1122 5635 3.852578 AGGTTGTAATCTGGAATGGGACT 59.147 43.478 0.00 0.00 0.00 3.85
1124 5637 5.104485 AGGTTGTAATCTGGAATGGGACTAC 60.104 44.000 0.00 0.00 0.00 2.73
1128 5641 2.335681 TCTGGAATGGGACTACACCA 57.664 50.000 0.00 0.00 43.22 4.17
1145 5658 1.141657 ACCATATTGGCGCAGATCTGT 59.858 47.619 23.38 5.58 42.67 3.41
1165 5678 1.094785 GTGGGATGGTGAATTGGTCG 58.905 55.000 0.00 0.00 0.00 4.79
1166 5679 0.988063 TGGGATGGTGAATTGGTCGA 59.012 50.000 0.00 0.00 0.00 4.20
1169 5682 1.949525 GGATGGTGAATTGGTCGATGG 59.050 52.381 0.00 0.00 0.00 3.51
1172 5685 0.734889 GGTGAATTGGTCGATGGCTG 59.265 55.000 0.00 0.00 0.00 4.85
1206 5719 1.064906 ACTGGCTTCATCATGACCCTG 60.065 52.381 0.00 8.21 0.00 4.45
1219 5732 3.695830 TGACCCTGACAATTGTCTACC 57.304 47.619 32.57 19.51 44.99 3.18
1220 5733 2.976185 TGACCCTGACAATTGTCTACCA 59.024 45.455 32.57 21.32 44.99 3.25
1225 5738 2.749621 CTGACAATTGTCTACCAAGGGC 59.250 50.000 32.57 9.43 44.99 5.19
1228 5741 1.468520 CAATTGTCTACCAAGGGCGTG 59.531 52.381 0.00 0.00 36.25 5.34
1313 5826 2.525368 GGGCATGTTTAGGTTTCTGGT 58.475 47.619 0.00 0.00 0.00 4.00
1386 5899 1.134788 AGCTGTGACCAATACGCCTAC 60.135 52.381 0.00 0.00 0.00 3.18
1461 5974 0.108585 TCAGTGGGTTTGAGCCTGAC 59.891 55.000 0.00 0.00 36.53 3.51
1485 5998 2.038557 TGTTAACTTCTCCAGAGGGTGC 59.961 50.000 7.22 0.00 34.93 5.01
1512 6025 2.725221 AGGAGGATCTGAAATGTGGC 57.275 50.000 0.00 0.00 33.73 5.01
1787 6306 8.141298 TCAACAGGTATACATCTTTCCTTGTA 57.859 34.615 5.01 0.00 33.19 2.41
1795 6314 9.257651 GTATACATCTTTCCTTGTACGCTTATT 57.742 33.333 0.00 0.00 31.55 1.40
1807 6326 2.623535 ACGCTTATTGATTGTACGGCA 58.376 42.857 0.00 0.00 0.00 5.69
1812 6331 4.273480 GCTTATTGATTGTACGGCATGACT 59.727 41.667 0.00 0.00 0.00 3.41
1814 6333 4.621068 ATTGATTGTACGGCATGACTTG 57.379 40.909 0.00 0.00 0.00 3.16
1866 6385 6.315393 GGTTTAGGATGACACATTAATCACGT 59.685 38.462 0.00 0.00 0.00 4.49
1880 6400 4.891627 AATCACGTCAAACACAACATCA 57.108 36.364 0.00 0.00 0.00 3.07
1892 6412 2.406024 CACAACATCACAAGAAATGCGC 59.594 45.455 0.00 0.00 0.00 6.09
1895 6415 2.073056 ACATCACAAGAAATGCGCGTA 58.927 42.857 8.43 2.40 0.00 4.42
1896 6416 2.094258 ACATCACAAGAAATGCGCGTAG 59.906 45.455 8.43 0.00 0.00 3.51
1925 6445 2.054232 AGCATCATTCTCTTGCTGGG 57.946 50.000 0.00 0.00 44.63 4.45
1962 6482 3.722147 TCTGCAGTTGAGAAACAGAGTC 58.278 45.455 14.67 0.00 32.65 3.36
1963 6483 3.386078 TCTGCAGTTGAGAAACAGAGTCT 59.614 43.478 14.67 0.00 32.65 3.24
1964 6484 4.584743 TCTGCAGTTGAGAAACAGAGTCTA 59.415 41.667 14.67 0.00 32.65 2.59
1965 6485 5.069119 TCTGCAGTTGAGAAACAGAGTCTAA 59.931 40.000 14.67 0.00 32.65 2.10
1967 6487 5.928839 TGCAGTTGAGAAACAGAGTCTAATC 59.071 40.000 0.00 0.00 0.00 1.75
1987 6572 2.160615 TCACGACAAACACAACACTTGG 59.839 45.455 0.00 0.00 34.12 3.61
2021 6608 7.254319 GCATGTTAGATTTTGGAAGCATCATTG 60.254 37.037 0.00 0.00 0.00 2.82
2052 6644 0.670162 TTCTGGCTTTCTGCAGTTGC 59.330 50.000 14.67 15.45 45.15 4.17
2062 6654 0.240411 CTGCAGTTGCCAAAGAGAGC 59.760 55.000 5.25 0.00 41.18 4.09
2097 6692 2.985896 TGCACTCCCAGTAATTGCTAC 58.014 47.619 0.00 0.00 34.18 3.58
2098 6693 2.571653 TGCACTCCCAGTAATTGCTACT 59.428 45.455 0.00 0.00 41.87 2.57
2099 6694 3.772572 TGCACTCCCAGTAATTGCTACTA 59.227 43.478 0.00 0.00 38.92 1.82
2258 6860 3.058914 AGGCAAACGACGAATCAAGAAAG 60.059 43.478 0.00 0.00 0.00 2.62
2383 6985 3.411446 TGCAACGGACAATTTCTCAGAT 58.589 40.909 0.00 0.00 0.00 2.90
2411 7013 0.827507 GCTTGGGAAAGGTGGCTTCA 60.828 55.000 0.00 0.00 0.00 3.02
2432 7037 9.020813 GCTTCAGAAAAGTTTACAAGGTAAAAG 57.979 33.333 3.36 0.00 0.00 2.27
2459 7064 8.491152 GTTTTAACCTGATCATCATCGATACAG 58.509 37.037 0.00 1.80 0.00 2.74
2639 7249 7.677511 GCATAGAAACTTAGTTAGGCTTCTTGC 60.678 40.741 0.00 6.60 41.94 4.01
2735 7345 5.818136 TTTGGTATGTTCTGCTCTTATGC 57.182 39.130 0.00 0.00 0.00 3.14
2737 7347 4.445453 TGGTATGTTCTGCTCTTATGCTG 58.555 43.478 0.00 0.00 0.00 4.41
2762 7373 7.777910 TGAAGTCTCCCAAAACATTCTTAGAAA 59.222 33.333 0.00 0.00 0.00 2.52
2812 7425 5.482686 TTGAATTTTGCACTTTTCTTGCC 57.517 34.783 0.00 0.00 39.39 4.52
2925 7538 8.401490 AGATTCAAGGCTAACAATAATCCATC 57.599 34.615 0.00 0.00 0.00 3.51
2927 7540 5.680619 TCAAGGCTAACAATAATCCATCGT 58.319 37.500 0.00 0.00 0.00 3.73
3020 7633 3.631227 GGATCTTTGGAGGAAATGAGCAG 59.369 47.826 0.00 0.00 0.00 4.24
3064 7677 9.607988 TGTTGTTGGGACATAGTAAGTAATATG 57.392 33.333 4.64 4.64 39.30 1.78
3209 7822 4.080919 AGTCTGACATGTATAGCTTTGGCA 60.081 41.667 10.88 0.00 41.70 4.92
3213 7826 4.580167 TGACATGTATAGCTTTGGCATTCC 59.420 41.667 0.00 0.00 41.70 3.01
3214 7827 4.796606 ACATGTATAGCTTTGGCATTCCT 58.203 39.130 0.00 0.00 41.70 3.36
3244 7857 5.589050 GGAGATTGTAAGCGGGTTAAAGATT 59.411 40.000 0.55 0.00 0.00 2.40
3247 7860 5.806366 TTGTAAGCGGGTTAAAGATTAGC 57.194 39.130 0.55 0.00 0.00 3.09
3261 7874 4.888326 AGATTAGCTCATCCCATCTCAC 57.112 45.455 4.23 0.00 0.00 3.51
3326 7939 8.922058 AATATGCTCTAATTTCTTTGCAACTG 57.078 30.769 0.00 0.00 34.07 3.16
3334 7949 8.250332 TCTAATTTCTTTGCAACTGAAACACTT 58.750 29.630 21.61 16.48 33.36 3.16
3335 7950 6.892310 ATTTCTTTGCAACTGAAACACTTC 57.108 33.333 21.61 0.00 33.36 3.01
3359 7974 9.656040 TTCAATAAATTGAGGATTTCATTGGTG 57.344 29.630 5.60 0.00 46.34 4.17
3393 8008 5.068723 AGCTTATGGAAAGATGGAAATGCAG 59.931 40.000 0.00 0.00 0.00 4.41
3611 8226 3.360867 TGAAGTTGAAGACCAAAGGCAA 58.639 40.909 0.00 0.00 36.36 4.52
3674 8289 2.891191 TGGAAGAGGGGCGTTAAATT 57.109 45.000 0.00 0.00 0.00 1.82
3726 8502 7.992754 AAATTCTCTCTTATGCAGTTGTTCT 57.007 32.000 0.00 0.00 0.00 3.01
3727 8503 6.981762 ATTCTCTCTTATGCAGTTGTTCTG 57.018 37.500 0.00 0.00 46.12 3.02
3771 8547 3.600388 CAGCTTCCTCGGTTAGTCAATT 58.400 45.455 0.00 0.00 0.00 2.32
3795 8571 3.434984 GTCTGGAACTCTGAATTGCTGTC 59.565 47.826 0.00 0.00 0.00 3.51
3821 8597 6.569179 GGTAACAAGGCTGATAAAAACTCA 57.431 37.500 0.00 0.00 0.00 3.41
3897 8676 2.097825 GTACACATGTACTCCCTCCGT 58.902 52.381 13.76 0.00 45.47 4.69
3898 8677 2.519771 ACACATGTACTCCCTCCGTA 57.480 50.000 0.00 0.00 0.00 4.02
3899 8678 2.811410 ACACATGTACTCCCTCCGTAA 58.189 47.619 0.00 0.00 0.00 3.18
3900 8679 3.167485 ACACATGTACTCCCTCCGTAAA 58.833 45.455 0.00 0.00 0.00 2.01
3901 8680 3.056322 ACACATGTACTCCCTCCGTAAAC 60.056 47.826 0.00 0.00 0.00 2.01
3902 8681 3.194968 CACATGTACTCCCTCCGTAAACT 59.805 47.826 0.00 0.00 0.00 2.66
3903 8682 4.400251 CACATGTACTCCCTCCGTAAACTA 59.600 45.833 0.00 0.00 0.00 2.24
3904 8683 5.018809 ACATGTACTCCCTCCGTAAACTAA 58.981 41.667 0.00 0.00 0.00 2.24
3905 8684 5.659971 ACATGTACTCCCTCCGTAAACTAAT 59.340 40.000 0.00 0.00 0.00 1.73
3906 8685 6.835488 ACATGTACTCCCTCCGTAAACTAATA 59.165 38.462 0.00 0.00 0.00 0.98
3907 8686 7.508296 ACATGTACTCCCTCCGTAAACTAATAT 59.492 37.037 0.00 0.00 0.00 1.28
3908 8687 9.017509 CATGTACTCCCTCCGTAAACTAATATA 57.982 37.037 0.00 0.00 0.00 0.86
3909 8688 8.995027 TGTACTCCCTCCGTAAACTAATATAA 57.005 34.615 0.00 0.00 0.00 0.98
3910 8689 9.071276 TGTACTCCCTCCGTAAACTAATATAAG 57.929 37.037 0.00 0.00 0.00 1.73
3911 8690 9.289782 GTACTCCCTCCGTAAACTAATATAAGA 57.710 37.037 0.00 0.00 0.00 2.10
3912 8691 8.406730 ACTCCCTCCGTAAACTAATATAAGAG 57.593 38.462 0.00 0.00 0.00 2.85
3913 8692 7.039853 ACTCCCTCCGTAAACTAATATAAGAGC 60.040 40.741 0.00 0.00 0.00 4.09
3914 8693 6.072286 TCCCTCCGTAAACTAATATAAGAGCG 60.072 42.308 0.00 0.00 0.00 5.03
3915 8694 6.294397 CCCTCCGTAAACTAATATAAGAGCGT 60.294 42.308 0.00 0.00 0.00 5.07
3916 8695 7.144000 CCTCCGTAAACTAATATAAGAGCGTT 58.856 38.462 0.00 0.00 0.00 4.84
3917 8696 7.650903 CCTCCGTAAACTAATATAAGAGCGTTT 59.349 37.037 0.00 0.00 0.00 3.60
3918 8697 9.669353 CTCCGTAAACTAATATAAGAGCGTTTA 57.331 33.333 0.00 0.00 0.00 2.01
3919 8698 9.669353 TCCGTAAACTAATATAAGAGCGTTTAG 57.331 33.333 0.00 0.00 30.36 1.85
3920 8699 9.669353 CCGTAAACTAATATAAGAGCGTTTAGA 57.331 33.333 0.00 0.00 30.36 2.10
3954 8733 9.530633 AAACGCTCTTATATTAGTTTACAGAGG 57.469 33.333 0.00 0.00 31.14 3.69
3955 8734 7.659186 ACGCTCTTATATTAGTTTACAGAGGG 58.341 38.462 8.36 8.36 42.53 4.30
3956 8735 7.504911 ACGCTCTTATATTAGTTTACAGAGGGA 59.495 37.037 14.96 0.00 40.49 4.20
3957 8736 8.024285 CGCTCTTATATTAGTTTACAGAGGGAG 58.976 40.741 4.76 0.00 40.49 4.30
3958 8737 8.862085 GCTCTTATATTAGTTTACAGAGGGAGT 58.138 37.037 0.00 0.00 0.00 3.85
3975 8754 4.721776 AGGGAGTATTAATTCAGTGGCTGA 59.278 41.667 0.00 0.00 38.87 4.26
4096 8875 0.953727 TCGTAGTACAGCGTGTTGGT 59.046 50.000 0.38 0.00 0.00 3.67
4097 8876 1.337703 TCGTAGTACAGCGTGTTGGTT 59.662 47.619 0.38 0.00 0.00 3.67
4098 8877 1.717645 CGTAGTACAGCGTGTTGGTTC 59.282 52.381 0.38 0.00 0.00 3.62
4099 8878 2.746269 GTAGTACAGCGTGTTGGTTCA 58.254 47.619 0.00 0.00 0.00 3.18
4100 8879 2.543777 AGTACAGCGTGTTGGTTCAT 57.456 45.000 0.00 0.00 0.00 2.57
4101 8880 2.143122 AGTACAGCGTGTTGGTTCATG 58.857 47.619 0.00 0.00 0.00 3.07
4102 8881 0.871722 TACAGCGTGTTGGTTCATGC 59.128 50.000 3.13 3.13 46.79 4.06
4144 8923 4.154717 GTCGCTTCTTTGAAATTCTGCTC 58.845 43.478 0.00 0.00 0.00 4.26
4146 8925 4.153117 TCGCTTCTTTGAAATTCTGCTCTC 59.847 41.667 0.00 0.00 0.00 3.20
4188 8967 5.485620 TGACCATTATGAGATGCTATGCTC 58.514 41.667 0.00 0.00 0.00 4.26
4248 9029 6.430925 GGCAGCATGTTCTGACCATTATATTA 59.569 38.462 4.68 0.00 36.09 0.98
4249 9030 7.301054 GCAGCATGTTCTGACCATTATATTAC 58.699 38.462 4.68 0.00 39.31 1.89
4250 9031 7.041167 GCAGCATGTTCTGACCATTATATTACA 60.041 37.037 4.68 0.00 39.31 2.41
4251 9032 8.501580 CAGCATGTTCTGACCATTATATTACAG 58.498 37.037 0.00 0.00 36.19 2.74
4252 9033 8.213679 AGCATGTTCTGACCATTATATTACAGT 58.786 33.333 0.00 0.00 0.00 3.55
4307 9088 8.946085 CAGCTGGATGTTCTATTTTTAGTGTAA 58.054 33.333 5.57 0.00 0.00 2.41
4396 9177 3.012730 TCCCCAATTGGTTCTCATCCATT 59.987 43.478 22.91 0.00 34.75 3.16
4402 9202 4.656100 TTGGTTCTCATCCATTCTCCAA 57.344 40.909 0.00 0.00 34.75 3.53
4405 9205 4.951715 TGGTTCTCATCCATTCTCCAAATG 59.048 41.667 0.00 0.00 0.00 2.32
4406 9206 4.952335 GGTTCTCATCCATTCTCCAAATGT 59.048 41.667 0.00 0.00 0.00 2.71
4407 9207 6.122277 GGTTCTCATCCATTCTCCAAATGTA 58.878 40.000 0.00 0.00 0.00 2.29
4408 9208 6.038714 GGTTCTCATCCATTCTCCAAATGTAC 59.961 42.308 0.00 0.00 0.00 2.90
4409 9209 6.312141 TCTCATCCATTCTCCAAATGTACA 57.688 37.500 0.00 0.00 0.00 2.90
4410 9210 6.720309 TCTCATCCATTCTCCAAATGTACAA 58.280 36.000 0.00 0.00 0.00 2.41
4411 9211 6.599244 TCTCATCCATTCTCCAAATGTACAAC 59.401 38.462 0.00 0.00 0.00 3.32
4412 9212 6.244654 TCATCCATTCTCCAAATGTACAACA 58.755 36.000 0.00 0.00 0.00 3.33
4413 9213 6.891361 TCATCCATTCTCCAAATGTACAACAT 59.109 34.615 0.00 0.00 41.31 2.71
4414 9214 8.052141 TCATCCATTCTCCAAATGTACAACATA 58.948 33.333 0.00 0.00 37.97 2.29
4415 9215 8.685427 CATCCATTCTCCAAATGTACAACATAA 58.315 33.333 0.00 0.00 37.97 1.90
4416 9216 8.821686 TCCATTCTCCAAATGTACAACATAAT 57.178 30.769 0.00 0.00 37.97 1.28
4417 9217 9.913310 TCCATTCTCCAAATGTACAACATAATA 57.087 29.630 0.00 0.00 37.97 0.98
4511 9311 5.936956 CCATGCTTATGAGAGATCCCTAAAC 59.063 44.000 0.00 0.00 0.00 2.01
4530 9338 7.445402 CCCTAAACTCTTCAGTTCATTCTTGAA 59.555 37.037 0.00 0.00 42.45 2.69
4541 9349 3.822735 TTCATTCTTGAAACAGGCTCCTG 59.177 43.478 14.05 14.05 41.87 3.86
4553 9361 2.357009 CAGGCTCCTGATGTGCAAATAC 59.643 50.000 10.33 0.00 46.30 1.89
4571 9379 5.886960 AATACATTGCTGAGTTTGGTCTC 57.113 39.130 0.00 0.00 35.28 3.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.298527 GGGGCTGTGACCTATTTAATAACAC 59.701 44.000 0.00 0.00 0.00 3.32
2 3 5.442391 TGGGGCTGTGACCTATTTAATAAC 58.558 41.667 0.00 0.00 0.00 1.89
4 5 5.718801 TTGGGGCTGTGACCTATTTAATA 57.281 39.130 0.00 0.00 0.00 0.98
7 8 4.601406 ATTTGGGGCTGTGACCTATTTA 57.399 40.909 0.00 0.00 0.00 1.40
9 10 4.814224 ATATTTGGGGCTGTGACCTATT 57.186 40.909 0.00 0.00 0.00 1.73
11 12 4.532834 GAAATATTTGGGGCTGTGACCTA 58.467 43.478 5.17 0.00 0.00 3.08
13 14 2.099098 CGAAATATTTGGGGCTGTGACC 59.901 50.000 5.17 0.00 0.00 4.02
14 15 2.099098 CCGAAATATTTGGGGCTGTGAC 59.901 50.000 18.78 0.00 33.03 3.67
15 16 2.374184 CCGAAATATTTGGGGCTGTGA 58.626 47.619 18.78 0.00 33.03 3.58
16 17 1.202405 GCCGAAATATTTGGGGCTGTG 60.202 52.381 25.24 4.87 36.65 3.66
20 21 1.111277 AGTGCCGAAATATTTGGGGC 58.889 50.000 25.24 24.38 36.65 5.80
97 98 9.763465 GCACTAAATAAACTAAAACAGCGATAA 57.237 29.630 0.00 0.00 0.00 1.75
98 99 8.937884 TGCACTAAATAAACTAAAACAGCGATA 58.062 29.630 0.00 0.00 0.00 2.92
99 100 7.812648 TGCACTAAATAAACTAAAACAGCGAT 58.187 30.769 0.00 0.00 0.00 4.58
100 101 7.192148 TGCACTAAATAAACTAAAACAGCGA 57.808 32.000 0.00 0.00 0.00 4.93
101 102 8.447787 AATGCACTAAATAAACTAAAACAGCG 57.552 30.769 0.00 0.00 0.00 5.18
136 137 9.932207 TGTAGGTGAAGAAATCGACTTTTAATA 57.068 29.630 0.00 0.00 0.00 0.98
138 139 8.842358 ATGTAGGTGAAGAAATCGACTTTTAA 57.158 30.769 0.00 0.00 0.00 1.52
139 140 8.842358 AATGTAGGTGAAGAAATCGACTTTTA 57.158 30.769 0.00 0.00 0.00 1.52
140 141 7.745620 AATGTAGGTGAAGAAATCGACTTTT 57.254 32.000 0.00 0.00 0.00 2.27
141 142 7.745620 AAATGTAGGTGAAGAAATCGACTTT 57.254 32.000 0.00 0.00 0.00 2.66
142 143 9.449719 AATAAATGTAGGTGAAGAAATCGACTT 57.550 29.630 0.00 0.00 0.00 3.01
168 169 9.913310 TGTTCCTAATGTGTCAAATAATCCATA 57.087 29.630 0.00 0.00 0.00 2.74
169 170 8.821686 TGTTCCTAATGTGTCAAATAATCCAT 57.178 30.769 0.00 0.00 0.00 3.41
179 180 9.743057 CAAAACTAAATTGTTCCTAATGTGTCA 57.257 29.630 0.00 0.00 0.00 3.58
180 181 9.959749 TCAAAACTAAATTGTTCCTAATGTGTC 57.040 29.630 0.00 0.00 0.00 3.67
181 182 9.744468 GTCAAAACTAAATTGTTCCTAATGTGT 57.256 29.630 0.00 0.00 0.00 3.72
182 183 9.965824 AGTCAAAACTAAATTGTTCCTAATGTG 57.034 29.630 0.00 0.00 32.59 3.21
188 189 9.936759 TTCAAAAGTCAAAACTAAATTGTTCCT 57.063 25.926 0.00 0.00 33.48 3.36
240 241 9.964303 TTCATAACCGATCCAAATTCATATTTG 57.036 29.630 0.00 0.00 46.62 2.32
241 242 9.965824 GTTCATAACCGATCCAAATTCATATTT 57.034 29.630 0.00 0.00 34.29 1.40
242 243 9.354673 AGTTCATAACCGATCCAAATTCATATT 57.645 29.630 0.00 0.00 0.00 1.28
243 244 8.924511 AGTTCATAACCGATCCAAATTCATAT 57.075 30.769 0.00 0.00 0.00 1.78
244 245 9.839817 TTAGTTCATAACCGATCCAAATTCATA 57.160 29.630 0.00 0.00 0.00 2.15
245 246 8.621286 GTTAGTTCATAACCGATCCAAATTCAT 58.379 33.333 0.00 0.00 38.27 2.57
246 247 7.201574 CGTTAGTTCATAACCGATCCAAATTCA 60.202 37.037 0.00 0.00 40.69 2.57
247 248 7.123830 CGTTAGTTCATAACCGATCCAAATTC 58.876 38.462 0.00 0.00 40.69 2.17
248 249 6.457799 GCGTTAGTTCATAACCGATCCAAATT 60.458 38.462 0.00 0.00 40.69 1.82
249 250 5.007332 GCGTTAGTTCATAACCGATCCAAAT 59.993 40.000 0.00 0.00 40.69 2.32
250 251 4.330620 GCGTTAGTTCATAACCGATCCAAA 59.669 41.667 0.00 0.00 40.69 3.28
252 253 3.450578 GCGTTAGTTCATAACCGATCCA 58.549 45.455 0.00 0.00 40.69 3.41
253 254 2.470257 CGCGTTAGTTCATAACCGATCC 59.530 50.000 0.00 0.00 40.69 3.36
254 255 3.365832 TCGCGTTAGTTCATAACCGATC 58.634 45.455 5.77 0.00 40.69 3.69
255 256 3.065786 TCTCGCGTTAGTTCATAACCGAT 59.934 43.478 5.77 0.00 41.69 4.18
258 259 5.107951 GCTAATCTCGCGTTAGTTCATAACC 60.108 44.000 5.77 0.00 40.69 2.85
260 261 5.584442 TGCTAATCTCGCGTTAGTTCATAA 58.416 37.500 5.77 0.00 32.90 1.90
261 262 5.177725 TGCTAATCTCGCGTTAGTTCATA 57.822 39.130 5.77 0.00 32.90 2.15
263 264 3.497297 TGCTAATCTCGCGTTAGTTCA 57.503 42.857 5.77 0.00 32.90 3.18
264 265 3.611113 TGTTGCTAATCTCGCGTTAGTTC 59.389 43.478 5.77 3.28 32.90 3.01
265 266 3.581755 TGTTGCTAATCTCGCGTTAGTT 58.418 40.909 5.77 0.00 32.90 2.24
266 267 3.179830 CTGTTGCTAATCTCGCGTTAGT 58.820 45.455 5.77 0.00 32.90 2.24
267 268 3.179830 ACTGTTGCTAATCTCGCGTTAG 58.820 45.455 5.77 8.34 33.36 2.34
268 269 3.226346 ACTGTTGCTAATCTCGCGTTA 57.774 42.857 5.77 0.00 0.00 3.18
269 270 2.080286 ACTGTTGCTAATCTCGCGTT 57.920 45.000 5.77 0.00 0.00 4.84
270 271 2.933495 TACTGTTGCTAATCTCGCGT 57.067 45.000 5.77 0.00 0.00 6.01
271 272 3.539592 CGTTTACTGTTGCTAATCTCGCG 60.540 47.826 0.00 0.00 0.00 5.87
272 273 3.241995 CCGTTTACTGTTGCTAATCTCGC 60.242 47.826 0.00 0.00 0.00 5.03
274 275 3.621715 CCCCGTTTACTGTTGCTAATCTC 59.378 47.826 0.00 0.00 0.00 2.75
275 276 3.008704 ACCCCGTTTACTGTTGCTAATCT 59.991 43.478 0.00 0.00 0.00 2.40
277 278 3.078837 CACCCCGTTTACTGTTGCTAAT 58.921 45.455 0.00 0.00 0.00 1.73
279 280 1.693062 TCACCCCGTTTACTGTTGCTA 59.307 47.619 0.00 0.00 0.00 3.49
280 281 0.470766 TCACCCCGTTTACTGTTGCT 59.529 50.000 0.00 0.00 0.00 3.91
281 282 0.589708 GTCACCCCGTTTACTGTTGC 59.410 55.000 0.00 0.00 0.00 4.17
282 283 1.956297 TGTCACCCCGTTTACTGTTG 58.044 50.000 0.00 0.00 0.00 3.33
285 286 1.448985 CCATGTCACCCCGTTTACTG 58.551 55.000 0.00 0.00 0.00 2.74
286 287 0.322187 GCCATGTCACCCCGTTTACT 60.322 55.000 0.00 0.00 0.00 2.24
288 289 0.329931 ATGCCATGTCACCCCGTTTA 59.670 50.000 0.00 0.00 0.00 2.01
290 291 1.378514 GATGCCATGTCACCCCGTT 60.379 57.895 0.00 0.00 0.00 4.44
291 292 2.272146 GATGCCATGTCACCCCGT 59.728 61.111 0.00 0.00 0.00 5.28
292 293 2.896854 CGATGCCATGTCACCCCG 60.897 66.667 0.00 0.00 0.00 5.73
293 294 0.107410 TAACGATGCCATGTCACCCC 60.107 55.000 0.00 0.00 0.00 4.95
294 295 1.400494 GTTAACGATGCCATGTCACCC 59.600 52.381 0.00 0.00 0.00 4.61
295 296 1.062002 CGTTAACGATGCCATGTCACC 59.938 52.381 23.35 0.00 43.02 4.02
296 297 1.730064 ACGTTAACGATGCCATGTCAC 59.270 47.619 33.06 0.00 43.02 3.67
297 298 1.729517 CACGTTAACGATGCCATGTCA 59.270 47.619 33.06 0.00 43.02 3.58
298 299 1.062002 CCACGTTAACGATGCCATGTC 59.938 52.381 33.06 0.00 43.02 3.06
299 300 1.083489 CCACGTTAACGATGCCATGT 58.917 50.000 33.06 6.33 43.02 3.21
300 301 0.376852 CCCACGTTAACGATGCCATG 59.623 55.000 33.06 19.06 43.02 3.66
301 302 0.250793 TCCCACGTTAACGATGCCAT 59.749 50.000 33.06 7.90 43.02 4.40
302 303 0.250793 ATCCCACGTTAACGATGCCA 59.749 50.000 33.06 15.53 43.02 4.92
304 305 3.000925 CAGTAATCCCACGTTAACGATGC 59.999 47.826 33.06 14.45 43.02 3.91
305 306 4.178540 ACAGTAATCCCACGTTAACGATG 58.821 43.478 33.06 24.21 43.02 3.84
306 307 4.460948 ACAGTAATCCCACGTTAACGAT 57.539 40.909 33.06 14.09 43.02 3.73
308 309 3.549070 GCTACAGTAATCCCACGTTAACG 59.451 47.826 25.68 25.68 46.33 3.18
309 310 4.752146 AGCTACAGTAATCCCACGTTAAC 58.248 43.478 0.00 0.00 0.00 2.01
310 311 5.410355 AAGCTACAGTAATCCCACGTTAA 57.590 39.130 0.00 0.00 0.00 2.01
311 312 6.528537 TTAAGCTACAGTAATCCCACGTTA 57.471 37.500 0.00 0.00 0.00 3.18
313 314 5.609533 ATTAAGCTACAGTAATCCCACGT 57.390 39.130 0.00 0.00 0.00 4.49
314 315 7.331193 GGATAATTAAGCTACAGTAATCCCACG 59.669 40.741 0.00 0.00 0.00 4.94
315 316 7.331193 CGGATAATTAAGCTACAGTAATCCCAC 59.669 40.741 0.00 0.00 0.00 4.61
316 317 7.383687 CGGATAATTAAGCTACAGTAATCCCA 58.616 38.462 0.00 0.00 0.00 4.37
317 318 6.817140 CCGGATAATTAAGCTACAGTAATCCC 59.183 42.308 0.00 0.00 0.00 3.85
318 319 6.817140 CCCGGATAATTAAGCTACAGTAATCC 59.183 42.308 0.73 0.00 0.00 3.01
319 320 6.313164 GCCCGGATAATTAAGCTACAGTAATC 59.687 42.308 0.73 0.00 0.00 1.75
320 321 6.171213 GCCCGGATAATTAAGCTACAGTAAT 58.829 40.000 0.73 0.00 0.00 1.89
322 323 4.321452 CGCCCGGATAATTAAGCTACAGTA 60.321 45.833 0.73 0.00 0.00 2.74
325 326 2.366266 ACGCCCGGATAATTAAGCTACA 59.634 45.455 0.73 0.00 0.00 2.74
326 327 2.991866 GACGCCCGGATAATTAAGCTAC 59.008 50.000 0.73 0.00 0.00 3.58
327 328 2.629137 TGACGCCCGGATAATTAAGCTA 59.371 45.455 0.73 0.00 0.00 3.32
328 329 1.414919 TGACGCCCGGATAATTAAGCT 59.585 47.619 0.73 0.00 0.00 3.74
329 330 1.529865 GTGACGCCCGGATAATTAAGC 59.470 52.381 0.73 0.00 0.00 3.09
331 332 2.828877 CTGTGACGCCCGGATAATTAA 58.171 47.619 0.73 0.00 0.00 1.40
333 334 0.814010 GCTGTGACGCCCGGATAATT 60.814 55.000 0.73 0.00 0.00 1.40
334 335 1.227556 GCTGTGACGCCCGGATAAT 60.228 57.895 0.73 0.00 0.00 1.28
335 336 2.185867 GCTGTGACGCCCGGATAA 59.814 61.111 0.73 0.00 0.00 1.75
336 337 4.201679 CGCTGTGACGCCCGGATA 62.202 66.667 0.73 0.00 0.00 2.59
381 382 2.887568 CATCAGCGTGCCTCGACC 60.888 66.667 2.66 0.00 42.86 4.79
382 383 1.875813 CTCATCAGCGTGCCTCGAC 60.876 63.158 2.66 0.00 42.86 4.20
393 394 2.831366 GCATGCCCGTGCTCATCAG 61.831 63.158 6.36 0.00 41.82 2.90
394 395 2.825387 GCATGCCCGTGCTCATCA 60.825 61.111 6.36 0.00 41.82 3.07
400 401 3.673484 ACACAAGCATGCCCGTGC 61.673 61.111 28.00 4.34 45.38 5.34
402 403 2.769652 ATCCACACAAGCATGCCCGT 62.770 55.000 15.66 9.12 0.00 5.28
403 404 0.747644 TATCCACACAAGCATGCCCG 60.748 55.000 15.66 8.37 0.00 6.13
404 405 1.406539 CTTATCCACACAAGCATGCCC 59.593 52.381 15.66 0.00 0.00 5.36
405 406 2.094675 ACTTATCCACACAAGCATGCC 58.905 47.619 15.66 0.00 0.00 4.40
407 408 4.478699 CACAACTTATCCACACAAGCATG 58.521 43.478 0.00 0.00 0.00 4.06
408 409 3.507233 CCACAACTTATCCACACAAGCAT 59.493 43.478 0.00 0.00 0.00 3.79
409 410 2.884012 CCACAACTTATCCACACAAGCA 59.116 45.455 0.00 0.00 0.00 3.91
410 411 2.228822 CCCACAACTTATCCACACAAGC 59.771 50.000 0.00 0.00 0.00 4.01
411 412 3.486383 ACCCACAACTTATCCACACAAG 58.514 45.455 0.00 0.00 0.00 3.16
412 413 3.482436 GACCCACAACTTATCCACACAA 58.518 45.455 0.00 0.00 0.00 3.33
413 414 2.224670 GGACCCACAACTTATCCACACA 60.225 50.000 0.00 0.00 0.00 3.72
414 415 2.433436 GGACCCACAACTTATCCACAC 58.567 52.381 0.00 0.00 0.00 3.82
415 416 1.353022 GGGACCCACAACTTATCCACA 59.647 52.381 5.33 0.00 0.00 4.17
416 417 1.353022 TGGGACCCACAACTTATCCAC 59.647 52.381 9.95 0.00 0.00 4.02
417 418 1.748732 TGGGACCCACAACTTATCCA 58.251 50.000 9.95 0.00 0.00 3.41
437 438 2.963854 CAGCTACTCGCATGCGGG 60.964 66.667 37.10 37.10 46.76 6.13
438 439 2.963854 CCAGCTACTCGCATGCGG 60.964 66.667 37.18 28.75 42.61 5.69
439 440 2.202797 ACCAGCTACTCGCATGCG 60.203 61.111 33.61 33.61 42.61 4.73
440 441 2.176273 CCACCAGCTACTCGCATGC 61.176 63.158 7.91 7.91 42.61 4.06
442 443 1.961180 GACCCACCAGCTACTCGCAT 61.961 60.000 0.00 0.00 42.61 4.73
443 444 2.603473 ACCCACCAGCTACTCGCA 60.603 61.111 0.00 0.00 42.61 5.10
444 445 2.184579 GACCCACCAGCTACTCGC 59.815 66.667 0.00 0.00 39.57 5.03
445 446 2.722201 GGGACCCACCAGCTACTCG 61.722 68.421 5.33 0.00 41.20 4.18
447 448 2.683933 CGGGACCCACCAGCTACT 60.684 66.667 12.15 0.00 41.20 2.57
455 456 2.510064 TTATGACACGCGGGACCCAC 62.510 60.000 19.19 0.00 0.00 4.61
456 457 2.284276 TTATGACACGCGGGACCCA 61.284 57.895 19.19 10.65 0.00 4.51
457 458 1.812507 GTTATGACACGCGGGACCC 60.813 63.158 19.19 0.00 0.00 4.46
458 459 0.804933 GAGTTATGACACGCGGGACC 60.805 60.000 19.19 7.02 0.00 4.46
460 461 0.604073 TTGAGTTATGACACGCGGGA 59.396 50.000 19.19 0.00 0.00 5.14
461 462 1.434555 TTTGAGTTATGACACGCGGG 58.565 50.000 6.92 6.92 0.00 6.13
462 463 2.285026 CGATTTGAGTTATGACACGCGG 60.285 50.000 12.47 1.27 0.00 6.46
463 464 2.842069 GCGATTTGAGTTATGACACGCG 60.842 50.000 3.53 3.53 34.87 6.01
464 465 2.348666 AGCGATTTGAGTTATGACACGC 59.651 45.455 0.00 0.00 43.00 5.34
466 467 5.220605 GGGTTAGCGATTTGAGTTATGACAC 60.221 44.000 0.00 0.00 0.00 3.67
468 469 4.272748 GGGGTTAGCGATTTGAGTTATGAC 59.727 45.833 0.00 0.00 0.00 3.06
470 471 4.451900 AGGGGTTAGCGATTTGAGTTATG 58.548 43.478 0.00 0.00 0.00 1.90
471 472 4.772886 AGGGGTTAGCGATTTGAGTTAT 57.227 40.909 0.00 0.00 0.00 1.89
472 473 4.258543 CAAGGGGTTAGCGATTTGAGTTA 58.741 43.478 0.00 0.00 0.00 2.24
474 475 2.039879 ACAAGGGGTTAGCGATTTGAGT 59.960 45.455 0.00 0.00 0.00 3.41
475 476 2.420022 CACAAGGGGTTAGCGATTTGAG 59.580 50.000 0.00 0.00 0.00 3.02
476 477 2.224670 ACACAAGGGGTTAGCGATTTGA 60.225 45.455 0.00 0.00 0.00 2.69
477 478 2.159382 ACACAAGGGGTTAGCGATTTG 58.841 47.619 0.00 0.00 0.00 2.32
479 480 2.579410 AACACAAGGGGTTAGCGATT 57.421 45.000 0.00 0.00 0.00 3.34
480 481 2.579410 AAACACAAGGGGTTAGCGAT 57.421 45.000 0.00 0.00 0.00 4.58
481 482 2.351706 AAAACACAAGGGGTTAGCGA 57.648 45.000 0.00 0.00 0.00 4.93
482 483 2.359531 TGAAAAACACAAGGGGTTAGCG 59.640 45.455 0.00 0.00 0.00 4.26
485 486 6.342111 GTGAAATGAAAAACACAAGGGGTTA 58.658 36.000 0.00 0.00 34.05 2.85
486 487 5.182487 GTGAAATGAAAAACACAAGGGGTT 58.818 37.500 0.00 0.00 34.05 4.11
487 488 4.679372 CGTGAAATGAAAAACACAAGGGGT 60.679 41.667 0.00 0.00 33.56 4.95
488 489 3.801594 CGTGAAATGAAAAACACAAGGGG 59.198 43.478 0.00 0.00 33.56 4.79
489 490 3.801594 CCGTGAAATGAAAAACACAAGGG 59.198 43.478 0.00 0.00 33.56 3.95
490 491 4.429108 ACCGTGAAATGAAAAACACAAGG 58.571 39.130 0.00 0.00 33.56 3.61
491 492 7.513190 TTAACCGTGAAATGAAAAACACAAG 57.487 32.000 0.00 0.00 33.56 3.16
492 493 7.384115 TGTTTAACCGTGAAATGAAAAACACAA 59.616 29.630 0.00 0.00 32.40 3.33
493 494 6.866770 TGTTTAACCGTGAAATGAAAAACACA 59.133 30.769 0.00 0.00 32.40 3.72
495 496 7.313646 TCTGTTTAACCGTGAAATGAAAAACA 58.686 30.769 0.00 0.00 35.15 2.83
496 497 7.514591 GCTCTGTTTAACCGTGAAATGAAAAAC 60.515 37.037 0.00 0.00 0.00 2.43
497 498 6.474102 GCTCTGTTTAACCGTGAAATGAAAAA 59.526 34.615 0.00 0.00 0.00 1.94
498 499 5.974751 GCTCTGTTTAACCGTGAAATGAAAA 59.025 36.000 0.00 0.00 0.00 2.29
499 500 5.506649 GGCTCTGTTTAACCGTGAAATGAAA 60.507 40.000 0.00 0.00 0.00 2.69
500 501 4.023536 GGCTCTGTTTAACCGTGAAATGAA 60.024 41.667 0.00 0.00 0.00 2.57
502 503 3.252215 TGGCTCTGTTTAACCGTGAAATG 59.748 43.478 0.00 0.00 0.00 2.32
503 504 3.482436 TGGCTCTGTTTAACCGTGAAAT 58.518 40.909 0.00 0.00 0.00 2.17
504 505 2.920524 TGGCTCTGTTTAACCGTGAAA 58.079 42.857 0.00 0.00 0.00 2.69
506 507 2.224426 ACATGGCTCTGTTTAACCGTGA 60.224 45.455 7.08 0.00 40.92 4.35
507 508 2.151202 ACATGGCTCTGTTTAACCGTG 58.849 47.619 0.00 0.00 43.47 4.94
508 509 2.423577 GACATGGCTCTGTTTAACCGT 58.576 47.619 0.00 0.00 0.00 4.83
509 510 1.393539 CGACATGGCTCTGTTTAACCG 59.606 52.381 0.00 0.00 0.00 4.44
510 511 1.130561 GCGACATGGCTCTGTTTAACC 59.869 52.381 0.00 0.00 0.00 2.85
512 513 2.177394 TGCGACATGGCTCTGTTTAA 57.823 45.000 0.00 0.00 0.00 1.52
514 515 1.200716 CAATGCGACATGGCTCTGTTT 59.799 47.619 0.00 0.00 0.00 2.83
515 516 0.806868 CAATGCGACATGGCTCTGTT 59.193 50.000 0.00 0.00 0.00 3.16
517 518 0.745486 TCCAATGCGACATGGCTCTG 60.745 55.000 0.00 0.00 36.62 3.35
518 519 0.463295 CTCCAATGCGACATGGCTCT 60.463 55.000 0.00 0.00 36.62 4.09
520 521 2.117156 GCTCCAATGCGACATGGCT 61.117 57.895 0.00 0.00 36.62 4.75
521 522 0.815213 TAGCTCCAATGCGACATGGC 60.815 55.000 0.00 0.00 36.62 4.40
524 525 4.456911 CCAATAATAGCTCCAATGCGACAT 59.543 41.667 0.00 0.00 38.13 3.06
527 528 2.813754 GCCAATAATAGCTCCAATGCGA 59.186 45.455 0.00 0.00 38.13 5.10
529 530 4.614535 CGAAGCCAATAATAGCTCCAATGC 60.615 45.833 0.00 0.00 38.74 3.56
530 531 4.756642 TCGAAGCCAATAATAGCTCCAATG 59.243 41.667 0.00 0.00 38.74 2.82
531 532 4.973168 TCGAAGCCAATAATAGCTCCAAT 58.027 39.130 0.00 0.00 38.74 3.16
533 534 4.415881 TTCGAAGCCAATAATAGCTCCA 57.584 40.909 0.00 0.00 38.74 3.86
534 535 5.511571 GTTTTCGAAGCCAATAATAGCTCC 58.488 41.667 0.00 0.00 38.74 4.70
552 553 3.347958 TGGCTTTGATGTGACGTTTTC 57.652 42.857 0.00 0.00 0.00 2.29
554 555 3.317711 TGAATGGCTTTGATGTGACGTTT 59.682 39.130 0.00 0.00 0.00 3.60
555 556 2.884012 TGAATGGCTTTGATGTGACGTT 59.116 40.909 0.00 0.00 0.00 3.99
557 558 3.770263 ATGAATGGCTTTGATGTGACG 57.230 42.857 0.00 0.00 0.00 4.35
559 560 4.009002 TCGAATGAATGGCTTTGATGTGA 58.991 39.130 0.00 0.00 0.00 3.58
561 562 4.460382 AGTTCGAATGAATGGCTTTGATGT 59.540 37.500 0.00 0.00 36.29 3.06
563 564 5.647658 TGTAGTTCGAATGAATGGCTTTGAT 59.352 36.000 0.00 0.00 36.29 2.57
564 565 5.000591 TGTAGTTCGAATGAATGGCTTTGA 58.999 37.500 0.00 0.00 36.29 2.69
565 566 5.295431 TGTAGTTCGAATGAATGGCTTTG 57.705 39.130 0.00 0.00 36.29 2.77
566 567 5.220662 CGATGTAGTTCGAATGAATGGCTTT 60.221 40.000 0.00 0.00 41.62 3.51
569 570 3.604772 GCGATGTAGTTCGAATGAATGGC 60.605 47.826 0.00 3.00 41.62 4.40
570 571 3.555547 TGCGATGTAGTTCGAATGAATGG 59.444 43.478 0.00 0.00 41.62 3.16
571 572 4.268644 AGTGCGATGTAGTTCGAATGAATG 59.731 41.667 0.00 0.00 41.62 2.67
572 573 4.433615 AGTGCGATGTAGTTCGAATGAAT 58.566 39.130 0.00 0.00 41.62 2.57
574 575 3.435566 GAGTGCGATGTAGTTCGAATGA 58.564 45.455 0.00 0.00 41.62 2.57
575 576 2.535984 GGAGTGCGATGTAGTTCGAATG 59.464 50.000 0.00 0.00 41.62 2.67
576 577 2.427453 AGGAGTGCGATGTAGTTCGAAT 59.573 45.455 0.00 0.00 41.62 3.34
577 578 1.816835 AGGAGTGCGATGTAGTTCGAA 59.183 47.619 0.00 0.00 41.62 3.71
578 579 1.460504 AGGAGTGCGATGTAGTTCGA 58.539 50.000 0.00 0.00 41.62 3.71
579 580 2.186076 GAAGGAGTGCGATGTAGTTCG 58.814 52.381 0.00 0.00 41.99 3.95
581 582 1.899814 TGGAAGGAGTGCGATGTAGTT 59.100 47.619 0.00 0.00 0.00 2.24
582 583 1.557099 TGGAAGGAGTGCGATGTAGT 58.443 50.000 0.00 0.00 0.00 2.73
583 584 2.672961 TTGGAAGGAGTGCGATGTAG 57.327 50.000 0.00 0.00 0.00 2.74
584 585 3.531538 GAATTGGAAGGAGTGCGATGTA 58.468 45.455 0.00 0.00 0.00 2.29
585 586 2.359900 GAATTGGAAGGAGTGCGATGT 58.640 47.619 0.00 0.00 0.00 3.06
586 587 1.328680 CGAATTGGAAGGAGTGCGATG 59.671 52.381 0.00 0.00 0.00 3.84
588 589 1.019278 GCGAATTGGAAGGAGTGCGA 61.019 55.000 0.00 0.00 0.00 5.10
589 590 1.298157 TGCGAATTGGAAGGAGTGCG 61.298 55.000 0.00 0.00 0.00 5.34
590 591 1.098050 ATGCGAATTGGAAGGAGTGC 58.902 50.000 0.00 0.00 0.00 4.40
591 592 2.358957 TCATGCGAATTGGAAGGAGTG 58.641 47.619 0.00 0.00 0.00 3.51
592 593 2.787473 TCATGCGAATTGGAAGGAGT 57.213 45.000 0.00 0.00 0.00 3.85
593 594 4.439305 TTTTCATGCGAATTGGAAGGAG 57.561 40.909 0.00 0.00 0.00 3.69
594 595 4.038522 TGTTTTTCATGCGAATTGGAAGGA 59.961 37.500 0.00 0.00 0.00 3.36
595 596 4.305769 TGTTTTTCATGCGAATTGGAAGG 58.694 39.130 0.00 0.00 0.00 3.46
596 597 5.220080 CGATGTTTTTCATGCGAATTGGAAG 60.220 40.000 0.00 0.00 36.83 3.46
597 598 4.620609 CGATGTTTTTCATGCGAATTGGAA 59.379 37.500 0.00 0.00 36.83 3.53
598 599 4.165036 CGATGTTTTTCATGCGAATTGGA 58.835 39.130 0.00 0.00 36.83 3.53
600 601 3.364322 TGCGATGTTTTTCATGCGAATTG 59.636 39.130 0.00 0.00 36.83 2.32
601 602 3.364621 GTGCGATGTTTTTCATGCGAATT 59.635 39.130 0.00 0.00 36.83 2.17
602 603 2.916716 GTGCGATGTTTTTCATGCGAAT 59.083 40.909 0.00 0.00 36.83 3.34
603 604 2.315011 GTGCGATGTTTTTCATGCGAA 58.685 42.857 0.00 0.00 36.83 4.70
604 605 1.724336 CGTGCGATGTTTTTCATGCGA 60.724 47.619 0.00 0.00 36.83 5.10
606 607 0.984109 CCGTGCGATGTTTTTCATGC 59.016 50.000 0.00 0.00 36.83 4.06
607 608 1.198867 TCCCGTGCGATGTTTTTCATG 59.801 47.619 0.00 0.00 36.83 3.07
608 609 1.468520 CTCCCGTGCGATGTTTTTCAT 59.531 47.619 0.00 0.00 39.77 2.57
609 610 0.871722 CTCCCGTGCGATGTTTTTCA 59.128 50.000 0.00 0.00 0.00 2.69
610 611 0.454452 GCTCCCGTGCGATGTTTTTC 60.454 55.000 0.00 0.00 0.00 2.29
611 612 0.889186 AGCTCCCGTGCGATGTTTTT 60.889 50.000 0.00 0.00 38.13 1.94
612 613 0.036765 TAGCTCCCGTGCGATGTTTT 60.037 50.000 0.00 0.00 38.13 2.43
613 614 0.178068 ATAGCTCCCGTGCGATGTTT 59.822 50.000 0.00 0.00 38.13 2.83
615 616 0.530650 CAATAGCTCCCGTGCGATGT 60.531 55.000 0.00 0.00 38.13 3.06
616 617 1.224069 CCAATAGCTCCCGTGCGATG 61.224 60.000 0.00 0.00 38.13 3.84
617 618 1.069765 CCAATAGCTCCCGTGCGAT 59.930 57.895 0.00 0.00 38.13 4.58
618 619 2.499205 CCAATAGCTCCCGTGCGA 59.501 61.111 0.00 0.00 38.13 5.10
619 620 3.272334 GCCAATAGCTCCCGTGCG 61.272 66.667 0.00 0.00 38.99 5.34
620 621 2.902343 GGCCAATAGCTCCCGTGC 60.902 66.667 0.00 0.00 43.05 5.34
621 622 2.203209 GGGCCAATAGCTCCCGTG 60.203 66.667 4.39 0.00 43.05 4.94
627 628 0.396278 GAGCAAAGGGGCCAATAGCT 60.396 55.000 4.39 9.36 43.05 3.32
628 629 0.396278 AGAGCAAAGGGGCCAATAGC 60.396 55.000 4.39 3.75 42.60 2.97
629 630 1.685148 GAGAGCAAAGGGGCCAATAG 58.315 55.000 4.39 0.00 0.00 1.73
630 631 0.107214 CGAGAGCAAAGGGGCCAATA 60.107 55.000 4.39 0.00 0.00 1.90
631 632 1.379044 CGAGAGCAAAGGGGCCAAT 60.379 57.895 4.39 0.00 0.00 3.16
632 633 2.034066 CGAGAGCAAAGGGGCCAA 59.966 61.111 4.39 0.00 0.00 4.52
633 634 4.033776 CCGAGAGCAAAGGGGCCA 62.034 66.667 4.39 0.00 0.00 5.36
670 5182 3.525537 CCGACATATGAGTCTGCAGTTT 58.474 45.455 14.67 2.72 36.38 2.66
742 5255 0.601841 GTTGGTGATCGGGTTGTCGT 60.602 55.000 0.00 0.00 0.00 4.34
801 5314 1.924731 TGGGAGTCAGACAAGACGAT 58.075 50.000 2.66 0.00 43.24 3.73
878 5391 3.567397 TCCAGAGTTGAGTAGGATAGCC 58.433 50.000 0.00 0.00 0.00 3.93
884 5397 5.368989 ACAAAGTTTCCAGAGTTGAGTAGG 58.631 41.667 0.00 0.00 0.00 3.18
887 5400 4.843728 TGACAAAGTTTCCAGAGTTGAGT 58.156 39.130 0.00 0.00 0.00 3.41
891 5404 4.792068 TGGATGACAAAGTTTCCAGAGTT 58.208 39.130 0.00 0.00 33.40 3.01
929 5442 1.141657 TGGAAGCTCTGCCATATGTCC 59.858 52.381 1.24 0.04 0.00 4.02
953 5466 2.847234 AGGGCCGTGTCAGTTGGA 60.847 61.111 0.00 0.00 0.00 3.53
966 5479 4.891037 GAGCATGCTGGGGAGGGC 62.891 72.222 28.27 3.62 0.00 5.19
967 5480 1.348008 TAAGAGCATGCTGGGGAGGG 61.348 60.000 28.27 0.00 0.00 4.30
975 5488 2.687700 CTCAGTGGTAAGAGCATGCT 57.312 50.000 22.92 22.92 0.00 3.79
982 5495 3.165071 TCATCTGTGCTCAGTGGTAAGA 58.835 45.455 15.01 3.82 41.91 2.10
983 5496 3.599730 TCATCTGTGCTCAGTGGTAAG 57.400 47.619 15.01 1.78 41.91 2.34
1006 5519 2.417379 GCAATGAGGCGAGTGTAGAGAA 60.417 50.000 0.00 0.00 0.00 2.87
1023 5536 2.948924 AGGCCCCCTCCAAGCAAT 60.949 61.111 0.00 0.00 0.00 3.56
1059 5572 1.485066 CCGCCCATGGAGTAGTTAGTT 59.515 52.381 15.22 0.00 0.00 2.24
1060 5573 1.120530 CCGCCCATGGAGTAGTTAGT 58.879 55.000 15.22 0.00 0.00 2.24
1061 5574 1.120530 ACCGCCCATGGAGTAGTTAG 58.879 55.000 15.22 0.00 0.00 2.34
1062 5575 0.828022 CACCGCCCATGGAGTAGTTA 59.172 55.000 15.22 0.00 0.00 2.24
1107 5620 3.189606 TGGTGTAGTCCCATTCCAGATT 58.810 45.455 0.00 0.00 0.00 2.40
1128 5641 2.216046 CACACAGATCTGCGCCAATAT 58.784 47.619 22.83 0.00 0.00 1.28
1145 5658 1.612991 CGACCAATTCACCATCCCACA 60.613 52.381 0.00 0.00 0.00 4.17
1165 5678 2.104792 TGCTACCTTGATACCAGCCATC 59.895 50.000 0.00 0.00 0.00 3.51
1166 5679 2.126882 TGCTACCTTGATACCAGCCAT 58.873 47.619 0.00 0.00 0.00 4.40
1169 5682 2.555199 CAGTGCTACCTTGATACCAGC 58.445 52.381 0.00 0.00 0.00 4.85
1172 5685 1.954927 GCCAGTGCTACCTTGATACC 58.045 55.000 0.00 0.00 33.53 2.73
1206 5719 1.737793 CGCCCTTGGTAGACAATTGTC 59.262 52.381 27.69 27.69 45.08 3.18
1219 5732 3.555956 GTCATGTATAACTCACGCCCTTG 59.444 47.826 0.00 0.00 0.00 3.61
1220 5733 3.196901 TGTCATGTATAACTCACGCCCTT 59.803 43.478 0.00 0.00 0.00 3.95
1225 5738 5.051708 CGGTGAATGTCATGTATAACTCACG 60.052 44.000 0.00 0.00 34.20 4.35
1228 5741 6.273825 AGACGGTGAATGTCATGTATAACTC 58.726 40.000 0.00 0.00 38.83 3.01
1313 5826 0.176910 TGACGAGTTGCTGTTCCACA 59.823 50.000 0.00 0.00 0.00 4.17
1386 5899 0.392998 AGTAGCCAAATGGTCCGCAG 60.393 55.000 0.71 0.00 37.57 5.18
1461 5974 2.353803 CCCTCTGGAGAAGTTAACACCG 60.354 54.545 8.61 3.43 0.00 4.94
1485 5998 1.781786 TCAGATCCTCCTTTCTCCGG 58.218 55.000 0.00 0.00 0.00 5.14
1512 6025 2.031683 GGTCAAGAAATTATCGCCACCG 59.968 50.000 0.00 0.00 0.00 4.94
1678 6191 2.548493 CCAACCAAATCAAGCACCTTGG 60.548 50.000 5.25 0.00 41.33 3.61
1787 6306 2.623535 TGCCGTACAATCAATAAGCGT 58.376 42.857 0.00 0.00 0.00 5.07
1795 6314 3.000041 GACAAGTCATGCCGTACAATCA 59.000 45.455 0.00 0.00 0.00 2.57
1807 6326 7.605449 CATTCAACATAAAAGGGACAAGTCAT 58.395 34.615 2.29 0.00 0.00 3.06
1812 6331 6.945435 TCTAGCATTCAACATAAAAGGGACAA 59.055 34.615 0.00 0.00 0.00 3.18
1814 6333 7.067494 ACATCTAGCATTCAACATAAAAGGGAC 59.933 37.037 0.00 0.00 0.00 4.46
1857 6376 6.183360 TGTGATGTTGTGTTTGACGTGATTAA 60.183 34.615 0.00 0.00 0.00 1.40
1866 6385 5.519566 GCATTTCTTGTGATGTTGTGTTTGA 59.480 36.000 0.00 0.00 0.00 2.69
1880 6400 4.419522 AAATTCTACGCGCATTTCTTGT 57.580 36.364 5.73 0.00 0.00 3.16
1892 6412 8.180267 AGAGAATGATGCTTTCAAAATTCTACG 58.820 33.333 0.00 0.00 37.97 3.51
1895 6415 7.331193 GCAAGAGAATGATGCTTTCAAAATTCT 59.669 33.333 0.00 0.00 39.29 2.40
1896 6416 7.453838 GCAAGAGAATGATGCTTTCAAAATTC 58.546 34.615 0.00 0.00 38.03 2.17
1925 6445 6.917217 ACTGCAGAAAGACAGAAATATAGC 57.083 37.500 23.35 0.00 37.35 2.97
1962 6482 5.403897 AGTGTTGTGTTTGTCGTGATTAG 57.596 39.130 0.00 0.00 0.00 1.73
1963 6483 5.447954 CCAAGTGTTGTGTTTGTCGTGATTA 60.448 40.000 0.00 0.00 0.00 1.75
1964 6484 4.411327 CAAGTGTTGTGTTTGTCGTGATT 58.589 39.130 0.00 0.00 0.00 2.57
1965 6485 3.181501 CCAAGTGTTGTGTTTGTCGTGAT 60.182 43.478 0.00 0.00 0.00 3.06
1967 6487 2.160615 TCCAAGTGTTGTGTTTGTCGTG 59.839 45.455 0.00 0.00 0.00 4.35
2003 6590 7.095270 AGAAAGACAATGATGCTTCCAAAATC 58.905 34.615 0.00 0.00 0.00 2.17
2010 6597 9.852091 AGAAATTTAGAAAGACAATGATGCTTC 57.148 29.630 0.00 0.00 0.00 3.86
2021 6608 6.584184 GCAGAAAGCCAGAAATTTAGAAAGAC 59.416 38.462 0.00 0.00 37.23 3.01
2052 6644 6.748333 TCTTCAATACATTGCTCTCTTTGG 57.252 37.500 0.00 0.00 37.68 3.28
2062 6654 5.125900 TGGGAGTGCAATCTTCAATACATTG 59.874 40.000 14.60 0.00 39.10 2.82
2220 6818 5.532557 GTTTGCCTGACAGAAATAGCTTTT 58.467 37.500 3.32 0.00 0.00 2.27
2258 6860 8.995906 GTGTTGTCGTGCATATTTATTCTTAAC 58.004 33.333 0.00 0.00 0.00 2.01
2383 6985 3.320541 CACCTTTCCCAAGCATGTTGTAA 59.679 43.478 0.00 0.00 0.00 2.41
2459 7064 8.337532 CAATTGAACAAAAGATGGGAACTTTTC 58.662 33.333 0.00 0.00 42.95 2.29
2639 7249 3.838120 TCATCTTCGTGAGTGCAGTAAG 58.162 45.455 0.00 0.00 0.00 2.34
2689 7299 5.712152 AGGAAGGCATCTAAACTTTTGTG 57.288 39.130 0.00 0.00 0.00 3.33
2697 7307 6.723977 ACATACCAAAAAGGAAGGCATCTAAA 59.276 34.615 0.00 0.00 41.22 1.85
2735 7345 6.936900 TCTAAGAATGTTTTGGGAGACTTCAG 59.063 38.462 0.00 0.00 0.00 3.02
2737 7347 7.745620 TTCTAAGAATGTTTTGGGAGACTTC 57.254 36.000 0.00 0.00 0.00 3.01
2762 7373 5.596836 AACAACCATCACAAATTCAGTGT 57.403 34.783 9.87 0.00 38.16 3.55
2925 7538 2.975410 TTGCTTGCTTTGAGATCACG 57.025 45.000 0.00 0.00 0.00 4.35
2927 7540 4.077108 AGACATTGCTTGCTTTGAGATCA 58.923 39.130 0.00 0.00 0.00 2.92
3064 7677 3.934068 TGTTAAGCCTTACCTAGTGCAC 58.066 45.455 9.40 9.40 0.00 4.57
3133 7746 2.000447 GGAGACATGTAACCGCTGTTC 59.000 52.381 0.00 0.00 35.87 3.18
3195 7808 4.080356 ACAGAGGAATGCCAAAGCTATACA 60.080 41.667 0.00 0.00 40.80 2.29
3209 7822 5.189180 GCTTACAATCTCCAACAGAGGAAT 58.811 41.667 0.00 0.00 43.44 3.01
3213 7826 2.932614 CCGCTTACAATCTCCAACAGAG 59.067 50.000 0.00 0.00 44.75 3.35
3214 7827 2.354704 CCCGCTTACAATCTCCAACAGA 60.355 50.000 0.00 0.00 34.78 3.41
3244 7857 3.072038 CCATTGTGAGATGGGATGAGCTA 59.928 47.826 0.00 0.00 42.36 3.32
3247 7860 3.851458 TCCATTGTGAGATGGGATGAG 57.149 47.619 4.23 0.00 45.42 2.90
3313 7926 5.777802 TGAAGTGTTTCAGTTGCAAAGAAA 58.222 33.333 18.95 18.95 38.37 2.52
3316 7929 7.754069 TTATTGAAGTGTTTCAGTTGCAAAG 57.246 32.000 0.00 0.00 43.76 2.77
3334 7949 8.814931 ACACCAATGAAATCCTCAATTTATTGA 58.185 29.630 5.16 5.16 43.94 2.57
3359 7974 3.492102 TTCCATAAGCTCCATGCCTAC 57.508 47.619 3.28 0.00 44.23 3.18
3393 8008 2.011540 GACGAGTCCACCAATTCTCC 57.988 55.000 0.00 0.00 0.00 3.71
3611 8226 5.276440 AGAGACATTTCCAGGTCATAGTCT 58.724 41.667 0.00 0.00 37.76 3.24
3674 8289 9.508642 ACAAAAAGGAAAACAATGGAACTAAAA 57.491 25.926 0.00 0.00 0.00 1.52
3726 8502 5.105635 GGGATGCAGAAAATTCATCAAGACA 60.106 40.000 0.00 0.00 38.58 3.41
3727 8503 5.105635 TGGGATGCAGAAAATTCATCAAGAC 60.106 40.000 0.00 0.00 38.58 3.01
3771 8547 2.373169 AGCAATTCAGAGTTCCAGACCA 59.627 45.455 0.00 0.00 0.00 4.02
3795 8571 5.476945 AGTTTTTATCAGCCTTGTTACCAGG 59.523 40.000 0.00 0.00 0.00 4.45
3821 8597 1.615392 GCACAGCCCAGAGAAAACATT 59.385 47.619 0.00 0.00 0.00 2.71
3862 8638 4.174411 TGTGTACCATCTCAGTTCTTCG 57.826 45.455 0.00 0.00 0.00 3.79
3888 8667 7.314393 GCTCTTATATTAGTTTACGGAGGGAG 58.686 42.308 0.00 0.00 0.00 4.30
3890 8669 6.091437 CGCTCTTATATTAGTTTACGGAGGG 58.909 44.000 0.00 0.00 0.00 4.30
3891 8670 6.675987 ACGCTCTTATATTAGTTTACGGAGG 58.324 40.000 0.00 0.00 0.00 4.30
3892 8671 8.571461 AAACGCTCTTATATTAGTTTACGGAG 57.429 34.615 0.00 0.00 31.14 4.63
3928 8707 9.530633 CCTCTGTAAACTAATATAAGAGCGTTT 57.469 33.333 0.00 0.00 0.00 3.60
3929 8708 8.142551 CCCTCTGTAAACTAATATAAGAGCGTT 58.857 37.037 0.00 0.00 0.00 4.84
3930 8709 7.504911 TCCCTCTGTAAACTAATATAAGAGCGT 59.495 37.037 0.00 0.00 0.00 5.07
3931 8710 7.883217 TCCCTCTGTAAACTAATATAAGAGCG 58.117 38.462 0.00 0.00 0.00 5.03
3932 8711 8.862085 ACTCCCTCTGTAAACTAATATAAGAGC 58.138 37.037 0.00 0.00 0.00 4.09
3943 8722 9.047947 ACTGAATTAATACTCCCTCTGTAAACT 57.952 33.333 0.00 0.00 0.00 2.66
3944 8723 9.099454 CACTGAATTAATACTCCCTCTGTAAAC 57.901 37.037 0.00 0.00 0.00 2.01
3945 8724 8.265055 CCACTGAATTAATACTCCCTCTGTAAA 58.735 37.037 0.00 0.00 0.00 2.01
3946 8725 7.635089 GCCACTGAATTAATACTCCCTCTGTAA 60.635 40.741 0.00 0.00 0.00 2.41
3947 8726 6.183360 GCCACTGAATTAATACTCCCTCTGTA 60.183 42.308 0.00 0.00 0.00 2.74
3948 8727 5.396884 GCCACTGAATTAATACTCCCTCTGT 60.397 44.000 0.00 0.00 0.00 3.41
3949 8728 5.059833 GCCACTGAATTAATACTCCCTCTG 58.940 45.833 0.00 0.00 0.00 3.35
3950 8729 4.971924 AGCCACTGAATTAATACTCCCTCT 59.028 41.667 0.00 0.00 0.00 3.69
3951 8730 5.059833 CAGCCACTGAATTAATACTCCCTC 58.940 45.833 0.00 0.00 32.44 4.30
3952 8731 4.721776 TCAGCCACTGAATTAATACTCCCT 59.278 41.667 0.00 0.00 37.57 4.20
3953 8732 5.036117 TCAGCCACTGAATTAATACTCCC 57.964 43.478 0.00 0.00 37.57 4.30
3975 8754 8.428852 GTTAATTATAATTCAGGGGGCACATTT 58.571 33.333 13.95 0.00 0.00 2.32
4146 8925 1.210478 CAGGGTACAGGGTTCAGGATG 59.790 57.143 0.00 0.00 37.54 3.51
4188 8967 7.775120 AGAATAACTGGGTTTGCTAATCATTG 58.225 34.615 0.00 0.00 0.00 2.82
4203 8984 6.238484 GCTGCCAGTGTATAAAGAATAACTGG 60.238 42.308 13.94 13.94 43.45 4.00
4265 9046 6.493189 TCCAGCTGTTCAACCATATACATA 57.507 37.500 13.81 0.00 0.00 2.29
4358 9139 6.715347 ATTGGGGAGTGTATTTTGCTAATC 57.285 37.500 0.00 0.00 0.00 1.75
4407 9207 8.766476 AGCAGCTCTCCATATATATTATGTTGT 58.234 33.333 0.00 0.00 0.00 3.32
4408 9208 9.610705 AAGCAGCTCTCCATATATATTATGTTG 57.389 33.333 0.00 0.00 0.00 3.33
4410 9210 9.829507 GAAAGCAGCTCTCCATATATATTATGT 57.170 33.333 0.00 0.00 0.00 2.29
4411 9211 8.976471 CGAAAGCAGCTCTCCATATATATTATG 58.024 37.037 0.00 0.00 0.00 1.90
4412 9212 8.918116 TCGAAAGCAGCTCTCCATATATATTAT 58.082 33.333 0.00 0.00 0.00 1.28
4413 9213 8.293699 TCGAAAGCAGCTCTCCATATATATTA 57.706 34.615 0.00 0.00 0.00 0.98
4414 9214 7.123397 TCTCGAAAGCAGCTCTCCATATATATT 59.877 37.037 0.00 0.00 0.00 1.28
4415 9215 6.605194 TCTCGAAAGCAGCTCTCCATATATAT 59.395 38.462 0.00 0.00 0.00 0.86
4416 9216 5.946377 TCTCGAAAGCAGCTCTCCATATATA 59.054 40.000 0.00 0.00 0.00 0.86
4417 9217 4.769488 TCTCGAAAGCAGCTCTCCATATAT 59.231 41.667 0.00 0.00 0.00 0.86
4427 9227 2.191128 ACCATTTCTCGAAAGCAGCT 57.809 45.000 0.00 0.00 33.32 4.24
4511 9311 6.666417 CCTGTTTCAAGAATGAACTGAAGAG 58.334 40.000 0.00 0.00 45.01 2.85
4530 9338 0.111061 TTGCACATCAGGAGCCTGTT 59.889 50.000 15.67 5.39 43.96 3.16
4553 9361 4.778534 ATTGAGACCAAACTCAGCAATG 57.221 40.909 0.00 0.00 45.63 2.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.