Multiple sequence alignment - TraesCS2D01G538200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G538200 chr2D 100.000 7945 0 0 1 7945 619504085 619496141 0.000000e+00 14672.0
1 TraesCS2D01G538200 chr2D 76.528 1031 179 43 4526 5531 619410034 619411026 9.200000e-139 505.0
2 TraesCS2D01G538200 chr2D 76.296 1042 175 44 4526 5530 619414710 619415716 2.580000e-134 490.0
3 TraesCS2D01G538200 chr2D 78.431 510 87 17 6376 6880 619415772 619416263 2.150000e-80 311.0
4 TraesCS2D01G538200 chr2D 84.977 213 23 6 6341 6552 619411076 619411280 2.910000e-49 207.0
5 TraesCS2D01G538200 chr2D 83.784 185 27 3 6383 6567 585737236 585737055 1.060000e-38 172.0
6 TraesCS2D01G538200 chr2A 94.418 4604 202 21 3386 7943 750957462 750952868 0.000000e+00 7027.0
7 TraesCS2D01G538200 chr2A 84.385 1902 231 39 2331 4214 263217999 263219852 0.000000e+00 1807.0
8 TraesCS2D01G538200 chr2A 91.220 1082 53 22 451 1520 750962918 750961867 0.000000e+00 1434.0
9 TraesCS2D01G538200 chr2A 95.556 405 15 1 1631 2035 750957866 750957465 0.000000e+00 645.0
10 TraesCS2D01G538200 chr2A 78.868 795 129 28 4751 5534 750564085 750564851 1.190000e-137 501.0
11 TraesCS2D01G538200 chr2A 76.431 1048 165 46 4525 5530 750570147 750571154 7.160000e-135 492.0
12 TraesCS2D01G538200 chr2A 78.335 817 122 33 4740 5530 750593921 750594708 2.010000e-130 477.0
13 TraesCS2D01G538200 chr2A 76.122 1047 170 47 4525 5530 750632160 750633167 7.210000e-130 475.0
14 TraesCS2D01G538200 chr2A 87.574 169 19 2 6385 6552 750564919 750565086 2.260000e-45 195.0
15 TraesCS2D01G538200 chr2A 97.849 93 2 0 1510 1602 750957957 750957865 2.290000e-35 161.0
16 TraesCS2D01G538200 chr2B 91.535 3095 193 21 4303 7383 758558082 758555043 0.000000e+00 4200.0
17 TraesCS2D01G538200 chr2B 91.634 1518 92 22 766 2273 758563148 758561656 0.000000e+00 2067.0
18 TraesCS2D01G538200 chr2B 84.699 1464 192 11 2443 3875 534373973 534375435 0.000000e+00 1434.0
19 TraesCS2D01G538200 chr2B 84.414 1373 180 20 791 2155 757257256 757258602 0.000000e+00 1319.0
20 TraesCS2D01G538200 chr2B 77.720 1921 378 31 2326 4208 43643779 43641871 0.000000e+00 1131.0
21 TraesCS2D01G538200 chr2B 76.297 1928 392 39 2330 4211 361647505 361649413 0.000000e+00 968.0
22 TraesCS2D01G538200 chr2B 81.610 919 137 17 4732 5626 757270147 757271057 0.000000e+00 732.0
23 TraesCS2D01G538200 chr2B 86.397 544 42 13 7404 7943 758543063 758542548 4.160000e-157 566.0
24 TraesCS2D01G538200 chr2B 77.317 1036 169 46 4534 5534 758794774 758793770 1.170000e-152 551.0
25 TraesCS2D01G538200 chr2B 79.648 796 129 26 4751 5534 758117528 758118302 7.010000e-150 542.0
26 TraesCS2D01G538200 chr2B 78.866 776 138 18 6111 6879 757271489 757272245 1.190000e-137 501.0
27 TraesCS2D01G538200 chr2B 74.305 1187 220 54 1055 2212 758121791 758122921 2.650000e-114 424.0
28 TraesCS2D01G538200 chr2B 80.484 579 92 13 4973 5530 758123925 758124503 2.650000e-114 424.0
29 TraesCS2D01G538200 chr2B 87.566 378 32 8 16 390 758575618 758575253 2.650000e-114 424.0
30 TraesCS2D01G538200 chr2B 73.500 1117 233 39 1048 2155 758115677 758116739 1.630000e-96 364.0
31 TraesCS2D01G538200 chr2B 75.532 752 171 10 2330 3078 387510227 387509486 2.730000e-94 357.0
32 TraesCS2D01G538200 chr2B 86.667 270 34 1 5276 5543 758598560 758598291 1.680000e-76 298.0
33 TraesCS2D01G538200 chr2B 77.756 508 84 16 1048 1550 758796380 758795897 1.300000e-72 285.0
34 TraesCS2D01G538200 chr2B 85.263 190 25 3 6371 6558 758793704 758793516 8.140000e-45 193.0
35 TraesCS2D01G538200 chr2B 86.982 169 20 2 6385 6552 758118370 758118537 1.050000e-43 189.0
36 TraesCS2D01G538200 chr2B 80.741 135 25 1 1 134 544977597 544977463 3.920000e-18 104.0
37 TraesCS2D01G538200 chr2B 89.583 48 5 0 4544 4591 707783028 707782981 2.390000e-05 62.1
38 TraesCS2D01G538200 chr3A 82.316 1917 295 21 2330 4211 567979857 567981764 0.000000e+00 1622.0
39 TraesCS2D01G538200 chr3A 81.818 1419 217 28 2333 3723 388952585 388951180 0.000000e+00 1153.0
40 TraesCS2D01G538200 chr3A 85.520 808 91 10 2330 3128 217723923 217724713 0.000000e+00 821.0
41 TraesCS2D01G538200 chr3A 72.790 871 206 23 2387 3250 655991377 655992223 4.730000e-67 267.0
42 TraesCS2D01G538200 chr3D 86.536 1426 139 16 2330 3721 177030493 177031899 0.000000e+00 1520.0
43 TraesCS2D01G538200 chr3D 80.521 1920 313 27 2327 4214 92270736 92268846 0.000000e+00 1417.0
44 TraesCS2D01G538200 chr3D 81.353 606 92 15 2395 2991 88433686 88434279 2.590000e-129 473.0
45 TraesCS2D01G538200 chr3D 73.072 843 203 14 2350 3189 520656996 520657817 2.180000e-70 278.0
46 TraesCS2D01G538200 chr5D 81.208 1921 317 23 2330 4214 193142760 193140848 0.000000e+00 1507.0
47 TraesCS2D01G538200 chr5D 77.763 1547 303 23 2331 3844 347349210 347350748 0.000000e+00 913.0
48 TraesCS2D01G538200 chr5D 77.850 772 160 9 2330 3096 380622687 380621922 1.210000e-127 468.0
49 TraesCS2D01G538200 chr7A 93.660 899 39 7 1134 2029 102542662 102543545 0.000000e+00 1328.0
50 TraesCS2D01G538200 chr7A 77.830 1926 375 35 2330 4214 97851120 97853034 0.000000e+00 1144.0
51 TraesCS2D01G538200 chr4D 78.694 1929 354 30 2324 4214 312918731 312916822 0.000000e+00 1232.0
52 TraesCS2D01G538200 chr5B 78.707 1902 351 37 2330 4192 480404576 480406462 0.000000e+00 1219.0
53 TraesCS2D01G538200 chr6B 78.200 1922 372 27 2330 4214 8732816 8730905 0.000000e+00 1184.0
54 TraesCS2D01G538200 chr4B 77.493 1915 386 21 2330 4208 535749860 535751765 0.000000e+00 1107.0
55 TraesCS2D01G538200 chr4B 76.036 1907 389 37 2350 4214 615763979 615762099 0.000000e+00 928.0
56 TraesCS2D01G538200 chr6A 80.250 719 130 8 3505 4214 144703543 144702828 1.520000e-146 531.0
57 TraesCS2D01G538200 chr3B 73.600 875 201 23 2387 3250 685896551 685897406 7.740000e-80 309.0
58 TraesCS2D01G538200 chr7B 84.536 97 14 1 4 99 630140959 630140863 2.360000e-15 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G538200 chr2D 619496141 619504085 7944 True 14672.00 14672 100.00000 1 7945 1 chr2D.!!$R2 7944
1 TraesCS2D01G538200 chr2D 619410034 619416263 6229 False 378.25 505 79.05800 4526 6880 4 chr2D.!!$F1 2354
2 TraesCS2D01G538200 chr2A 750952868 750962918 10050 True 2316.75 7027 94.76075 451 7943 4 chr2A.!!$R1 7492
3 TraesCS2D01G538200 chr2A 263217999 263219852 1853 False 1807.00 1807 84.38500 2331 4214 1 chr2A.!!$F1 1883
4 TraesCS2D01G538200 chr2A 750570147 750571154 1007 False 492.00 492 76.43100 4525 5530 1 chr2A.!!$F2 1005
5 TraesCS2D01G538200 chr2A 750593921 750594708 787 False 477.00 477 78.33500 4740 5530 1 chr2A.!!$F3 790
6 TraesCS2D01G538200 chr2A 750632160 750633167 1007 False 475.00 475 76.12200 4525 5530 1 chr2A.!!$F4 1005
7 TraesCS2D01G538200 chr2A 750564085 750565086 1001 False 348.00 501 83.22100 4751 6552 2 chr2A.!!$F5 1801
8 TraesCS2D01G538200 chr2B 758555043 758563148 8105 True 3133.50 4200 91.58450 766 7383 2 chr2B.!!$R8 6617
9 TraesCS2D01G538200 chr2B 534373973 534375435 1462 False 1434.00 1434 84.69900 2443 3875 1 chr2B.!!$F2 1432
10 TraesCS2D01G538200 chr2B 757257256 757258602 1346 False 1319.00 1319 84.41400 791 2155 1 chr2B.!!$F3 1364
11 TraesCS2D01G538200 chr2B 43641871 43643779 1908 True 1131.00 1131 77.72000 2326 4208 1 chr2B.!!$R1 1882
12 TraesCS2D01G538200 chr2B 361647505 361649413 1908 False 968.00 968 76.29700 2330 4211 1 chr2B.!!$F1 1881
13 TraesCS2D01G538200 chr2B 757270147 757272245 2098 False 616.50 732 80.23800 4732 6879 2 chr2B.!!$F4 2147
14 TraesCS2D01G538200 chr2B 758542548 758543063 515 True 566.00 566 86.39700 7404 7943 1 chr2B.!!$R5 539
15 TraesCS2D01G538200 chr2B 758115677 758124503 8826 False 388.60 542 78.98380 1048 6552 5 chr2B.!!$F5 5504
16 TraesCS2D01G538200 chr2B 387509486 387510227 741 True 357.00 357 75.53200 2330 3078 1 chr2B.!!$R2 748
17 TraesCS2D01G538200 chr2B 758793516 758796380 2864 True 343.00 551 80.11200 1048 6558 3 chr2B.!!$R9 5510
18 TraesCS2D01G538200 chr3A 567979857 567981764 1907 False 1622.00 1622 82.31600 2330 4211 1 chr3A.!!$F2 1881
19 TraesCS2D01G538200 chr3A 388951180 388952585 1405 True 1153.00 1153 81.81800 2333 3723 1 chr3A.!!$R1 1390
20 TraesCS2D01G538200 chr3A 217723923 217724713 790 False 821.00 821 85.52000 2330 3128 1 chr3A.!!$F1 798
21 TraesCS2D01G538200 chr3A 655991377 655992223 846 False 267.00 267 72.79000 2387 3250 1 chr3A.!!$F3 863
22 TraesCS2D01G538200 chr3D 177030493 177031899 1406 False 1520.00 1520 86.53600 2330 3721 1 chr3D.!!$F2 1391
23 TraesCS2D01G538200 chr3D 92268846 92270736 1890 True 1417.00 1417 80.52100 2327 4214 1 chr3D.!!$R1 1887
24 TraesCS2D01G538200 chr3D 88433686 88434279 593 False 473.00 473 81.35300 2395 2991 1 chr3D.!!$F1 596
25 TraesCS2D01G538200 chr3D 520656996 520657817 821 False 278.00 278 73.07200 2350 3189 1 chr3D.!!$F3 839
26 TraesCS2D01G538200 chr5D 193140848 193142760 1912 True 1507.00 1507 81.20800 2330 4214 1 chr5D.!!$R1 1884
27 TraesCS2D01G538200 chr5D 347349210 347350748 1538 False 913.00 913 77.76300 2331 3844 1 chr5D.!!$F1 1513
28 TraesCS2D01G538200 chr5D 380621922 380622687 765 True 468.00 468 77.85000 2330 3096 1 chr5D.!!$R2 766
29 TraesCS2D01G538200 chr7A 102542662 102543545 883 False 1328.00 1328 93.66000 1134 2029 1 chr7A.!!$F2 895
30 TraesCS2D01G538200 chr7A 97851120 97853034 1914 False 1144.00 1144 77.83000 2330 4214 1 chr7A.!!$F1 1884
31 TraesCS2D01G538200 chr4D 312916822 312918731 1909 True 1232.00 1232 78.69400 2324 4214 1 chr4D.!!$R1 1890
32 TraesCS2D01G538200 chr5B 480404576 480406462 1886 False 1219.00 1219 78.70700 2330 4192 1 chr5B.!!$F1 1862
33 TraesCS2D01G538200 chr6B 8730905 8732816 1911 True 1184.00 1184 78.20000 2330 4214 1 chr6B.!!$R1 1884
34 TraesCS2D01G538200 chr4B 535749860 535751765 1905 False 1107.00 1107 77.49300 2330 4208 1 chr4B.!!$F1 1878
35 TraesCS2D01G538200 chr4B 615762099 615763979 1880 True 928.00 928 76.03600 2350 4214 1 chr4B.!!$R1 1864
36 TraesCS2D01G538200 chr6A 144702828 144703543 715 True 531.00 531 80.25000 3505 4214 1 chr6A.!!$R1 709
37 TraesCS2D01G538200 chr3B 685896551 685897406 855 False 309.00 309 73.60000 2387 3250 1 chr3B.!!$F1 863

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
359 360 0.032017 ATACGCTCTCCCTCCAGGTT 60.032 55.000 0.00 0.00 36.75 3.50 F
1150 1166 0.037303 TGGCTTCTTCTCCCTGCAAG 59.963 55.000 0.00 0.00 0.00 4.01 F
1363 1394 0.105593 CACCACCGGATCAGGATCAG 59.894 60.000 19.55 6.99 39.54 2.90 F
2149 6106 0.107897 CTGCACGGGGTATGCTTACA 60.108 55.000 11.47 0.00 43.77 2.41 F
3098 9640 0.532417 ACCTCTCCCGTACGATCGAG 60.532 60.000 24.34 17.18 0.00 4.04 F
3551 10119 0.042131 ATCCCACCCGTTCCTGACTA 59.958 55.000 0.00 0.00 0.00 2.59 F
3938 10529 0.753848 CATGCCATCCAGTGCATCCA 60.754 55.000 0.00 0.00 45.98 3.41 F
5440 23594 1.671328 TGCTAGACTCGGAGATGAACG 59.329 52.381 12.86 0.00 33.89 3.95 F
6295 24507 1.031571 TGGACCAAGCGCATCATTCC 61.032 55.000 11.47 9.18 0.00 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2081 6038 0.108424 CTCCTCGAAGCTCCTGTTGG 60.108 60.000 0.00 0.00 0.00 3.77 R
2307 6273 0.475044 TGGGTGGGAGCTACGTTTTT 59.525 50.000 0.00 0.00 0.00 1.94 R
2308 6274 0.696501 ATGGGTGGGAGCTACGTTTT 59.303 50.000 0.00 0.00 0.00 2.43 R
3310 9876 1.010793 AGGGACAATCCTATGTGGGGA 59.989 52.381 0.00 0.00 36.57 4.81 R
4785 16703 0.447406 TCTTCGAACGTTATCCGCGA 59.553 50.000 8.23 2.34 41.42 5.87 R
4835 16753 2.158475 TCCTCTTCCAAGCATGTTGGTT 60.158 45.455 19.83 0.00 38.82 3.67 R
5877 24076 2.618241 TCACATGTGTGGAGAAAGCAAC 59.382 45.455 24.63 0.00 45.65 4.17 R
6923 25151 0.179134 AGCGACCATCTAGCGTTGTC 60.179 55.000 0.00 0.00 35.78 3.18 R
7164 25392 0.463654 TGGAGCGCAGAAACACACTT 60.464 50.000 11.47 0.00 0.00 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 3.275088 CGGAGCACGTGAGGTAGT 58.725 61.111 22.23 0.00 37.93 2.73
37 38 2.474561 CGGAGCACGTGAGGTAGTA 58.525 57.895 22.23 0.00 37.93 1.82
38 39 0.098376 CGGAGCACGTGAGGTAGTAC 59.902 60.000 22.23 0.00 37.93 2.73
39 40 0.098376 GGAGCACGTGAGGTAGTACG 59.902 60.000 22.23 0.00 45.19 3.67
40 41 0.098376 GAGCACGTGAGGTAGTACGG 59.902 60.000 22.23 0.00 44.07 4.02
41 42 1.515736 GCACGTGAGGTAGTACGGC 60.516 63.158 22.23 0.00 44.07 5.68
42 43 1.878070 CACGTGAGGTAGTACGGCA 59.122 57.895 10.90 0.00 44.07 5.69
43 44 0.179171 CACGTGAGGTAGTACGGCAG 60.179 60.000 10.90 0.00 44.07 4.85
44 45 1.226603 CGTGAGGTAGTACGGCAGC 60.227 63.158 0.00 0.00 36.71 5.25
45 46 1.654954 CGTGAGGTAGTACGGCAGCT 61.655 60.000 0.00 0.00 36.71 4.24
46 47 0.179134 GTGAGGTAGTACGGCAGCTG 60.179 60.000 10.11 10.11 0.00 4.24
47 48 1.227002 GAGGTAGTACGGCAGCTGC 60.227 63.158 30.88 30.88 41.14 5.25
48 49 2.582498 GGTAGTACGGCAGCTGCG 60.582 66.667 31.19 26.56 43.26 5.18
49 50 3.255379 GTAGTACGGCAGCTGCGC 61.255 66.667 31.19 22.35 43.26 6.09
50 51 4.847516 TAGTACGGCAGCTGCGCG 62.848 66.667 33.47 33.47 43.26 6.86
58 59 4.778415 CAGCTGCGCGAGGTACGT 62.778 66.667 12.10 0.00 44.60 3.57
73 74 4.873129 CGTGATGACGGGCCGGAG 62.873 72.222 31.78 8.89 42.18 4.63
86 87 2.269241 CGGAGGTTGAGGAAGGGC 59.731 66.667 0.00 0.00 0.00 5.19
87 88 2.677848 GGAGGTTGAGGAAGGGCC 59.322 66.667 0.00 0.00 0.00 5.80
88 89 2.677848 GAGGTTGAGGAAGGGCCC 59.322 66.667 16.46 16.46 37.37 5.80
89 90 2.941583 AGGTTGAGGAAGGGCCCC 60.942 66.667 21.43 3.11 37.37 5.80
90 91 4.426313 GGTTGAGGAAGGGCCCCG 62.426 72.222 21.43 0.00 37.37 5.73
94 95 4.048470 GAGGAAGGGCCCCGCTTT 62.048 66.667 21.43 5.76 36.78 3.51
95 96 3.585525 GAGGAAGGGCCCCGCTTTT 62.586 63.158 21.43 5.27 36.78 2.27
96 97 3.068691 GGAAGGGCCCCGCTTTTC 61.069 66.667 21.43 15.48 36.78 2.29
97 98 2.035783 GAAGGGCCCCGCTTTTCT 59.964 61.111 21.43 0.00 36.78 2.52
98 99 2.035783 AAGGGCCCCGCTTTTCTC 59.964 61.111 21.43 0.00 32.78 2.87
99 100 3.585525 AAGGGCCCCGCTTTTCTCC 62.586 63.158 21.43 0.00 32.78 3.71
103 104 3.127533 CCCCGCTTTTCTCCGCTG 61.128 66.667 0.00 0.00 0.00 5.18
104 105 2.358737 CCCGCTTTTCTCCGCTGT 60.359 61.111 0.00 0.00 0.00 4.40
105 106 2.680913 CCCGCTTTTCTCCGCTGTG 61.681 63.158 0.00 0.00 0.00 3.66
106 107 2.680913 CCGCTTTTCTCCGCTGTGG 61.681 63.158 0.00 0.00 40.09 4.17
107 108 2.680913 CGCTTTTCTCCGCTGTGGG 61.681 63.158 7.51 0.00 38.76 4.61
108 109 2.335712 GCTTTTCTCCGCTGTGGGG 61.336 63.158 7.51 3.58 40.98 4.96
113 114 2.266055 CTCCGCTGTGGGGAAGAC 59.734 66.667 0.00 0.00 43.10 3.01
114 115 3.316573 CTCCGCTGTGGGGAAGACC 62.317 68.421 0.00 0.00 43.10 3.85
127 128 4.648007 AGACCCAGTCTTGCAGGA 57.352 55.556 0.00 0.00 40.28 3.86
128 129 2.062070 AGACCCAGTCTTGCAGGAC 58.938 57.895 20.56 20.56 40.28 3.85
129 130 1.374758 GACCCAGTCTTGCAGGACG 60.375 63.158 21.67 16.19 40.76 4.79
130 131 1.816863 GACCCAGTCTTGCAGGACGA 61.817 60.000 21.67 0.00 40.76 4.20
131 132 1.374758 CCCAGTCTTGCAGGACGAC 60.375 63.158 21.67 10.63 40.76 4.34
132 133 1.734477 CCAGTCTTGCAGGACGACG 60.734 63.158 21.67 14.44 40.76 5.12
133 134 1.285950 CAGTCTTGCAGGACGACGA 59.714 57.895 21.67 0.00 40.76 4.20
134 135 1.004277 CAGTCTTGCAGGACGACGAC 61.004 60.000 21.67 0.00 40.76 4.34
135 136 2.081212 GTCTTGCAGGACGACGACG 61.081 63.158 13.66 5.58 45.75 5.12
146 147 2.202146 GACGACGTCGAGGACACG 60.202 66.667 41.52 16.10 43.02 4.49
147 148 2.661566 GACGACGTCGAGGACACGA 61.662 63.158 41.52 0.00 43.02 4.35
148 149 2.162921 GACGACGTCGAGGACACGAA 62.163 60.000 41.52 0.00 43.75 3.85
149 150 1.791283 CGACGTCGAGGACACGAAC 60.791 63.158 33.35 0.00 43.75 3.95
150 151 1.791283 GACGTCGAGGACACGAACG 60.791 63.158 12.85 0.00 43.75 3.95
151 152 2.501222 CGTCGAGGACACGAACGG 60.501 66.667 0.00 0.00 43.75 4.44
152 153 2.804090 GTCGAGGACACGAACGGC 60.804 66.667 0.00 0.00 43.75 5.68
155 156 4.047059 GAGGACACGAACGGCGGA 62.047 66.667 13.24 0.00 46.49 5.54
156 157 3.966026 GAGGACACGAACGGCGGAG 62.966 68.421 13.24 4.21 46.49 4.63
157 158 4.353437 GGACACGAACGGCGGAGT 62.353 66.667 13.24 4.95 46.49 3.85
158 159 3.103911 GACACGAACGGCGGAGTG 61.104 66.667 22.93 22.93 46.49 3.51
159 160 3.547249 GACACGAACGGCGGAGTGA 62.547 63.158 28.37 0.00 46.49 3.41
160 161 2.805353 CACGAACGGCGGAGTGAG 60.805 66.667 21.07 5.83 46.49 3.51
161 162 3.292936 ACGAACGGCGGAGTGAGT 61.293 61.111 13.24 0.00 46.49 3.41
162 163 2.049433 CGAACGGCGGAGTGAGTT 60.049 61.111 13.24 0.00 36.03 3.01
163 164 1.663702 CGAACGGCGGAGTGAGTTT 60.664 57.895 13.24 0.00 36.03 2.66
164 165 1.219522 CGAACGGCGGAGTGAGTTTT 61.220 55.000 13.24 0.00 36.03 2.43
165 166 0.234884 GAACGGCGGAGTGAGTTTTG 59.765 55.000 13.24 0.00 0.00 2.44
166 167 1.782028 AACGGCGGAGTGAGTTTTGC 61.782 55.000 13.24 0.00 0.00 3.68
167 168 2.556287 GGCGGAGTGAGTTTTGCG 59.444 61.111 0.00 0.00 0.00 4.85
168 169 2.556287 GCGGAGTGAGTTTTGCGG 59.444 61.111 0.00 0.00 0.00 5.69
169 170 2.966309 GCGGAGTGAGTTTTGCGGG 61.966 63.158 0.00 0.00 0.00 6.13
170 171 1.301401 CGGAGTGAGTTTTGCGGGA 60.301 57.895 0.00 0.00 0.00 5.14
171 172 1.566018 CGGAGTGAGTTTTGCGGGAC 61.566 60.000 0.00 0.00 0.00 4.46
195 196 2.900122 AAAAGGTGTCATTCGATGCG 57.100 45.000 0.00 0.00 0.00 4.73
196 197 1.086696 AAAGGTGTCATTCGATGCGG 58.913 50.000 0.00 0.00 0.00 5.69
197 198 0.249120 AAGGTGTCATTCGATGCGGA 59.751 50.000 0.00 0.00 0.00 5.54
198 199 0.179100 AGGTGTCATTCGATGCGGAG 60.179 55.000 0.00 0.00 0.00 4.63
199 200 0.460284 GGTGTCATTCGATGCGGAGT 60.460 55.000 0.00 0.00 0.00 3.85
200 201 0.647410 GTGTCATTCGATGCGGAGTG 59.353 55.000 0.00 0.00 0.00 3.51
201 202 0.530288 TGTCATTCGATGCGGAGTGA 59.470 50.000 0.00 0.00 31.24 3.41
202 203 1.067213 TGTCATTCGATGCGGAGTGAA 60.067 47.619 0.00 0.00 34.93 3.18
203 204 1.324736 GTCATTCGATGCGGAGTGAAC 59.675 52.381 0.00 0.00 34.93 3.18
204 205 1.067213 TCATTCGATGCGGAGTGAACA 60.067 47.619 0.00 0.00 30.84 3.18
205 206 1.935873 CATTCGATGCGGAGTGAACAT 59.064 47.619 0.00 0.00 0.00 2.71
206 207 1.640428 TTCGATGCGGAGTGAACATC 58.360 50.000 0.00 0.00 37.44 3.06
207 208 0.530288 TCGATGCGGAGTGAACATCA 59.470 50.000 0.00 0.00 40.15 3.07
208 209 0.926155 CGATGCGGAGTGAACATCAG 59.074 55.000 0.00 0.00 40.15 2.90
209 210 1.469767 CGATGCGGAGTGAACATCAGA 60.470 52.381 0.00 0.00 40.15 3.27
210 211 1.929836 GATGCGGAGTGAACATCAGAC 59.070 52.381 0.00 0.00 39.95 3.51
211 212 0.388520 TGCGGAGTGAACATCAGACG 60.389 55.000 0.00 0.00 0.00 4.18
212 213 0.109272 GCGGAGTGAACATCAGACGA 60.109 55.000 0.00 0.00 0.00 4.20
213 214 1.618861 CGGAGTGAACATCAGACGAC 58.381 55.000 0.00 0.00 0.00 4.34
214 215 1.068541 CGGAGTGAACATCAGACGACA 60.069 52.381 0.00 0.00 0.00 4.35
215 216 2.329379 GGAGTGAACATCAGACGACAC 58.671 52.381 0.00 0.00 0.00 3.67
216 217 2.029828 GGAGTGAACATCAGACGACACT 60.030 50.000 0.00 0.00 40.49 3.55
217 218 3.553096 GGAGTGAACATCAGACGACACTT 60.553 47.826 0.00 0.00 38.43 3.16
218 219 4.051922 GAGTGAACATCAGACGACACTTT 58.948 43.478 0.00 0.00 38.43 2.66
219 220 4.051922 AGTGAACATCAGACGACACTTTC 58.948 43.478 0.00 0.00 35.52 2.62
235 236 8.418267 CGACACTTTCGGTAAAATTAGAAAAG 57.582 34.615 0.00 0.00 44.60 2.27
236 237 8.277713 CGACACTTTCGGTAAAATTAGAAAAGA 58.722 33.333 0.00 0.00 44.60 2.52
241 242 9.774742 CTTTCGGTAAAATTAGAAAAGATCTGG 57.225 33.333 0.00 0.00 39.30 3.86
242 243 8.857694 TTCGGTAAAATTAGAAAAGATCTGGT 57.142 30.769 0.00 0.00 39.30 4.00
243 244 8.263940 TCGGTAAAATTAGAAAAGATCTGGTG 57.736 34.615 0.00 0.00 39.30 4.17
244 245 7.881232 TCGGTAAAATTAGAAAAGATCTGGTGT 59.119 33.333 0.00 0.00 39.30 4.16
245 246 7.962918 CGGTAAAATTAGAAAAGATCTGGTGTG 59.037 37.037 0.00 0.00 39.30 3.82
246 247 7.755373 GGTAAAATTAGAAAAGATCTGGTGTGC 59.245 37.037 0.00 0.00 39.30 4.57
247 248 5.904362 AATTAGAAAAGATCTGGTGTGCC 57.096 39.130 0.00 0.00 39.30 5.01
248 249 2.957402 AGAAAAGATCTGGTGTGCCA 57.043 45.000 0.00 0.00 43.73 4.92
260 261 4.314740 TGGTGTGCCAGTTACAAATTTC 57.685 40.909 0.00 0.00 40.46 2.17
261 262 3.243234 TGGTGTGCCAGTTACAAATTTCG 60.243 43.478 0.00 0.00 40.46 3.46
262 263 3.243267 GGTGTGCCAGTTACAAATTTCGT 60.243 43.478 0.00 0.00 34.09 3.85
263 264 4.023878 GGTGTGCCAGTTACAAATTTCGTA 60.024 41.667 0.00 0.00 34.09 3.43
264 265 4.907582 GTGTGCCAGTTACAAATTTCGTAC 59.092 41.667 0.00 0.00 0.00 3.67
265 266 4.575236 TGTGCCAGTTACAAATTTCGTACA 59.425 37.500 0.00 0.00 0.00 2.90
266 267 5.066117 TGTGCCAGTTACAAATTTCGTACAA 59.934 36.000 0.00 0.00 0.00 2.41
267 268 6.146898 GTGCCAGTTACAAATTTCGTACAAT 58.853 36.000 0.00 0.00 0.00 2.71
268 269 6.087555 GTGCCAGTTACAAATTTCGTACAATG 59.912 38.462 0.00 0.00 0.00 2.82
269 270 5.571357 GCCAGTTACAAATTTCGTACAATGG 59.429 40.000 15.08 15.08 0.00 3.16
270 271 6.568844 GCCAGTTACAAATTTCGTACAATGGA 60.569 38.462 18.81 0.00 0.00 3.41
271 272 7.535139 CCAGTTACAAATTTCGTACAATGGAT 58.465 34.615 14.72 0.00 0.00 3.41
272 273 8.026607 CCAGTTACAAATTTCGTACAATGGATT 58.973 33.333 14.72 0.00 0.00 3.01
328 329 8.816640 AAAAATCTCTAATCGCACAAAAACAT 57.183 26.923 0.00 0.00 0.00 2.71
329 330 9.906660 AAAAATCTCTAATCGCACAAAAACATA 57.093 25.926 0.00 0.00 0.00 2.29
330 331 9.559958 AAAATCTCTAATCGCACAAAAACATAG 57.440 29.630 0.00 0.00 0.00 2.23
331 332 7.849804 ATCTCTAATCGCACAAAAACATAGT 57.150 32.000 0.00 0.00 0.00 2.12
332 333 8.942338 ATCTCTAATCGCACAAAAACATAGTA 57.058 30.769 0.00 0.00 0.00 1.82
333 334 8.942338 TCTCTAATCGCACAAAAACATAGTAT 57.058 30.769 0.00 0.00 0.00 2.12
337 338 9.864034 CTAATCGCACAAAAACATAGTATAAGG 57.136 33.333 0.00 0.00 0.00 2.69
338 339 6.114221 TCGCACAAAAACATAGTATAAGGC 57.886 37.500 0.00 0.00 0.00 4.35
339 340 5.878116 TCGCACAAAAACATAGTATAAGGCT 59.122 36.000 0.00 0.00 0.00 4.58
340 341 7.042950 TCGCACAAAAACATAGTATAAGGCTA 58.957 34.615 0.00 0.00 0.00 3.93
341 342 7.713507 TCGCACAAAAACATAGTATAAGGCTAT 59.286 33.333 0.00 0.00 0.00 2.97
342 343 8.984764 CGCACAAAAACATAGTATAAGGCTATA 58.015 33.333 0.00 0.00 0.00 1.31
345 346 8.985805 ACAAAAACATAGTATAAGGCTATACGC 58.014 33.333 0.00 0.00 43.23 4.42
346 347 9.204570 CAAAAACATAGTATAAGGCTATACGCT 57.795 33.333 0.00 0.00 43.23 5.07
347 348 8.983307 AAAACATAGTATAAGGCTATACGCTC 57.017 34.615 0.00 0.00 43.23 5.03
348 349 7.941431 AACATAGTATAAGGCTATACGCTCT 57.059 36.000 0.00 0.00 43.23 4.09
349 350 7.556733 ACATAGTATAAGGCTATACGCTCTC 57.443 40.000 0.00 0.00 43.23 3.20
350 351 6.543100 ACATAGTATAAGGCTATACGCTCTCC 59.457 42.308 0.00 0.00 43.23 3.71
351 352 4.271661 AGTATAAGGCTATACGCTCTCCC 58.728 47.826 0.00 0.00 43.23 4.30
352 353 2.973983 TAAGGCTATACGCTCTCCCT 57.026 50.000 0.00 0.00 39.13 4.20
353 354 1.623163 AAGGCTATACGCTCTCCCTC 58.377 55.000 0.00 0.00 39.13 4.30
354 355 0.251430 AGGCTATACGCTCTCCCTCC 60.251 60.000 0.00 0.00 39.13 4.30
355 356 0.539901 GGCTATACGCTCTCCCTCCA 60.540 60.000 0.00 0.00 39.13 3.86
356 357 0.885196 GCTATACGCTCTCCCTCCAG 59.115 60.000 0.00 0.00 35.14 3.86
357 358 1.540267 CTATACGCTCTCCCTCCAGG 58.460 60.000 0.00 0.00 0.00 4.45
358 359 0.851469 TATACGCTCTCCCTCCAGGT 59.149 55.000 0.00 0.00 36.75 4.00
359 360 0.032017 ATACGCTCTCCCTCCAGGTT 60.032 55.000 0.00 0.00 36.75 3.50
360 361 0.252103 TACGCTCTCCCTCCAGGTTT 60.252 55.000 0.00 0.00 36.75 3.27
361 362 0.252103 ACGCTCTCCCTCCAGGTTTA 60.252 55.000 0.00 0.00 36.75 2.01
362 363 0.902531 CGCTCTCCCTCCAGGTTTAA 59.097 55.000 0.00 0.00 36.75 1.52
363 364 1.278127 CGCTCTCCCTCCAGGTTTAAA 59.722 52.381 0.00 0.00 36.75 1.52
364 365 2.290071 CGCTCTCCCTCCAGGTTTAAAA 60.290 50.000 0.00 0.00 36.75 1.52
365 366 3.348119 GCTCTCCCTCCAGGTTTAAAAG 58.652 50.000 0.00 0.00 36.75 2.27
366 367 3.009143 GCTCTCCCTCCAGGTTTAAAAGA 59.991 47.826 0.00 0.00 36.75 2.52
367 368 4.580868 CTCTCCCTCCAGGTTTAAAAGAC 58.419 47.826 0.00 0.00 36.75 3.01
368 369 3.977999 TCTCCCTCCAGGTTTAAAAGACA 59.022 43.478 0.00 0.00 36.75 3.41
369 370 4.072839 CTCCCTCCAGGTTTAAAAGACAC 58.927 47.826 0.00 0.00 36.75 3.67
370 371 3.154710 CCCTCCAGGTTTAAAAGACACC 58.845 50.000 0.00 0.00 0.00 4.16
371 372 3.181433 CCCTCCAGGTTTAAAAGACACCT 60.181 47.826 0.00 0.00 41.97 4.00
372 373 4.042435 CCCTCCAGGTTTAAAAGACACCTA 59.958 45.833 0.00 0.00 39.01 3.08
373 374 5.001874 CCTCCAGGTTTAAAAGACACCTAC 58.998 45.833 0.00 0.00 39.01 3.18
374 375 4.976864 TCCAGGTTTAAAAGACACCTACC 58.023 43.478 0.00 0.00 39.01 3.18
375 376 4.077108 CCAGGTTTAAAAGACACCTACCC 58.923 47.826 0.00 0.00 39.01 3.69
376 377 4.446600 CCAGGTTTAAAAGACACCTACCCA 60.447 45.833 0.00 0.00 39.01 4.51
377 378 5.134661 CAGGTTTAAAAGACACCTACCCAA 58.865 41.667 0.00 0.00 39.01 4.12
378 379 5.595133 CAGGTTTAAAAGACACCTACCCAAA 59.405 40.000 0.00 0.00 39.01 3.28
379 380 6.097129 CAGGTTTAAAAGACACCTACCCAAAA 59.903 38.462 0.00 0.00 39.01 2.44
380 381 6.322969 AGGTTTAAAAGACACCTACCCAAAAG 59.677 38.462 0.00 0.00 39.28 2.27
381 382 6.097270 GGTTTAAAAGACACCTACCCAAAAGT 59.903 38.462 0.00 0.00 0.00 2.66
382 383 7.364056 GGTTTAAAAGACACCTACCCAAAAGTT 60.364 37.037 0.00 0.00 0.00 2.66
383 384 5.592104 AAAAGACACCTACCCAAAAGTTG 57.408 39.130 0.00 0.00 0.00 3.16
384 385 3.945640 AGACACCTACCCAAAAGTTGT 57.054 42.857 0.00 0.00 0.00 3.32
385 386 4.245251 AGACACCTACCCAAAAGTTGTT 57.755 40.909 0.00 0.00 0.00 2.83
386 387 4.606210 AGACACCTACCCAAAAGTTGTTT 58.394 39.130 0.00 0.00 0.00 2.83
387 388 5.020795 AGACACCTACCCAAAAGTTGTTTT 58.979 37.500 0.00 0.00 36.22 2.43
388 389 5.482526 AGACACCTACCCAAAAGTTGTTTTT 59.517 36.000 0.00 0.00 39.55 1.94
411 412 4.445452 TCTTCAAGAAAAGGCATCATGC 57.555 40.909 0.00 0.00 44.08 4.06
412 413 4.322198 TTCTTCAAGAAAAGGCATCATGCC 60.322 41.667 22.29 22.29 46.90 4.40
420 421 4.197498 GCATCATGCCCGCGCTTT 62.197 61.111 5.56 0.00 37.42 3.51
421 422 2.278336 CATCATGCCCGCGCTTTG 60.278 61.111 5.56 0.00 35.36 2.77
422 423 4.197498 ATCATGCCCGCGCTTTGC 62.197 61.111 5.56 5.71 41.47 3.68
430 431 3.707700 CGCGCTTTGCCACACGTA 61.708 61.111 5.56 0.00 42.08 3.57
431 432 2.127383 GCGCTTTGCCACACGTAC 60.127 61.111 0.00 0.00 37.76 3.67
432 433 2.170036 CGCTTTGCCACACGTACG 59.830 61.111 15.01 15.01 0.00 3.67
433 434 2.127383 GCTTTGCCACACGTACGC 60.127 61.111 16.72 0.00 0.00 4.42
434 435 2.887889 GCTTTGCCACACGTACGCA 61.888 57.895 16.72 1.07 0.00 5.24
435 436 1.866237 CTTTGCCACACGTACGCAT 59.134 52.632 16.72 0.00 31.44 4.73
436 437 1.072391 CTTTGCCACACGTACGCATA 58.928 50.000 16.72 0.00 31.44 3.14
437 438 1.461512 CTTTGCCACACGTACGCATAA 59.538 47.619 16.72 0.00 31.44 1.90
438 439 1.728068 TTGCCACACGTACGCATAAT 58.272 45.000 16.72 0.00 31.44 1.28
439 440 1.728068 TGCCACACGTACGCATAATT 58.272 45.000 16.72 0.00 0.00 1.40
440 441 2.077627 TGCCACACGTACGCATAATTT 58.922 42.857 16.72 0.00 0.00 1.82
441 442 3.259902 TGCCACACGTACGCATAATTTA 58.740 40.909 16.72 0.00 0.00 1.40
442 443 3.062369 TGCCACACGTACGCATAATTTAC 59.938 43.478 16.72 0.00 0.00 2.01
443 444 3.838542 GCCACACGTACGCATAATTTACG 60.839 47.826 16.72 5.35 43.34 3.18
449 450 5.549207 CGTACGCATAATTTACGTGATCA 57.451 39.130 0.52 0.00 40.78 2.92
450 451 6.136007 CGTACGCATAATTTACGTGATCAT 57.864 37.500 0.52 0.00 40.78 2.45
451 452 6.577800 CGTACGCATAATTTACGTGATCATT 58.422 36.000 0.52 0.00 40.78 2.57
452 453 7.713043 CGTACGCATAATTTACGTGATCATTA 58.287 34.615 0.52 0.00 40.78 1.90
453 454 7.677226 CGTACGCATAATTTACGTGATCATTAC 59.323 37.037 0.52 0.00 40.78 1.89
454 455 6.577800 ACGCATAATTTACGTGATCATTACG 58.422 36.000 0.00 0.00 46.31 3.18
455 456 6.007079 CGCATAATTTACGTGATCATTACGG 58.993 40.000 6.93 0.00 45.24 4.02
456 457 6.304126 GCATAATTTACGTGATCATTACGGG 58.696 40.000 6.93 0.00 45.24 5.28
457 458 4.806342 AATTTACGTGATCATTACGGGC 57.194 40.909 6.93 0.00 45.24 6.13
458 459 3.530265 TTTACGTGATCATTACGGGCT 57.470 42.857 6.93 0.00 45.24 5.19
459 460 2.502213 TACGTGATCATTACGGGCTG 57.498 50.000 6.93 0.00 45.24 4.85
499 500 4.771577 TGCATTCAAATTTAAGGAGCAGGA 59.228 37.500 0.00 0.00 0.00 3.86
520 521 2.255935 ACCATGGGGAGGGGCAAAT 61.256 57.895 18.09 0.00 38.05 2.32
526 527 1.273552 TGGGGAGGGGCAAATTAAAGG 60.274 52.381 0.00 0.00 0.00 3.11
527 528 1.496060 GGGAGGGGCAAATTAAAGGG 58.504 55.000 0.00 0.00 0.00 3.95
544 545 4.871933 AAGGGGTGTTGCTAAATTTCAG 57.128 40.909 0.00 0.00 0.00 3.02
547 548 3.365969 GGGGTGTTGCTAAATTTCAGTCG 60.366 47.826 0.00 0.00 0.00 4.18
548 549 3.500680 GGGTGTTGCTAAATTTCAGTCGA 59.499 43.478 0.00 0.00 0.00 4.20
549 550 4.464112 GGTGTTGCTAAATTTCAGTCGAC 58.536 43.478 7.70 7.70 0.00 4.20
550 551 4.213482 GGTGTTGCTAAATTTCAGTCGACT 59.787 41.667 13.58 13.58 0.00 4.18
551 552 5.374898 GTGTTGCTAAATTTCAGTCGACTC 58.625 41.667 16.96 1.27 0.00 3.36
552 553 4.149922 TGTTGCTAAATTTCAGTCGACTCG 59.850 41.667 16.96 11.66 0.00 4.18
569 570 1.207089 CTCGGACTTGGTTATGCCTCA 59.793 52.381 0.00 0.00 38.35 3.86
570 571 1.626321 TCGGACTTGGTTATGCCTCAA 59.374 47.619 0.00 0.00 38.35 3.02
572 573 3.452990 TCGGACTTGGTTATGCCTCAATA 59.547 43.478 0.00 0.00 38.35 1.90
580 581 8.220559 ACTTGGTTATGCCTCAATAGATGTTAT 58.779 33.333 0.00 0.00 38.35 1.89
589 590 9.639601 TGCCTCAATAGATGTTATATTCGTAAG 57.360 33.333 0.00 0.00 0.00 2.34
674 678 6.826231 TGTCACTTGATTGAGTCTTGGTTAAA 59.174 34.615 0.00 0.00 0.00 1.52
676 680 8.352942 GTCACTTGATTGAGTCTTGGTTAAATT 58.647 33.333 0.00 0.00 0.00 1.82
699 703 3.118186 TCACTAGACTGAGAGACCTAGCC 60.118 52.174 0.00 0.00 33.70 3.93
703 707 2.024464 AGACTGAGAGACCTAGCCACAT 60.024 50.000 0.00 0.00 0.00 3.21
711 715 4.346418 AGAGACCTAGCCACATCCAATTAG 59.654 45.833 0.00 0.00 0.00 1.73
717 721 3.118531 AGCCACATCCAATTAGAGAGGT 58.881 45.455 0.00 0.00 0.00 3.85
815 820 1.138036 CGTCGATGTCCGGCAGTTA 59.862 57.895 0.00 0.00 44.43 2.24
828 833 1.946768 GGCAGTTACAACTTGAGCACA 59.053 47.619 0.00 0.00 37.08 4.57
846 851 3.062763 CACAGCAGAGAAACAACGAGAT 58.937 45.455 0.00 0.00 0.00 2.75
946 958 2.487762 TCATGGTCTCCGAATTGCAAAC 59.512 45.455 1.71 0.00 0.00 2.93
952 964 1.268352 CTCCGAATTGCAAACGGGAAA 59.732 47.619 32.35 20.39 45.61 3.13
1042 1058 1.487976 TCATCCTCATGCTCCTGGTTC 59.512 52.381 0.00 0.00 0.00 3.62
1070 1086 0.460311 AACTCCGATGACCGCCTAAG 59.540 55.000 0.00 0.00 36.84 2.18
1150 1166 0.037303 TGGCTTCTTCTCCCTGCAAG 59.963 55.000 0.00 0.00 0.00 4.01
1197 1216 4.444876 GGCATATGGTACCACAACATCTCT 60.445 45.833 19.09 0.00 0.00 3.10
1241 1260 4.812476 CCGCGACAGCCCGATCAA 62.812 66.667 8.23 0.00 41.18 2.57
1348 1379 4.112086 CGAACAACGTCACCACCA 57.888 55.556 0.00 0.00 37.22 4.17
1359 1390 2.121832 ACCACCACCGGATCAGGA 59.878 61.111 19.55 0.00 34.73 3.86
1360 1391 1.306997 ACCACCACCGGATCAGGAT 60.307 57.895 19.55 0.00 34.73 3.24
1361 1392 1.338136 ACCACCACCGGATCAGGATC 61.338 60.000 19.55 0.55 37.11 3.36
1362 1393 1.337384 CCACCACCGGATCAGGATCA 61.337 60.000 19.55 0.00 39.54 2.92
1363 1394 0.105593 CACCACCGGATCAGGATCAG 59.894 60.000 19.55 6.99 39.54 2.90
1367 1398 1.750930 CCGGATCAGGATCAGGTGG 59.249 63.158 17.15 7.28 44.66 4.61
1368 1399 1.070445 CGGATCAGGATCAGGTGGC 59.930 63.158 11.12 0.00 39.54 5.01
1369 1400 1.070445 GGATCAGGATCAGGTGGCG 59.930 63.158 11.12 0.00 39.54 5.69
1370 1401 1.070445 GATCAGGATCAGGTGGCGG 59.930 63.158 4.44 0.00 37.74 6.13
1371 1402 1.383109 ATCAGGATCAGGTGGCGGA 60.383 57.895 0.00 0.00 0.00 5.54
1372 1403 1.406065 ATCAGGATCAGGTGGCGGAG 61.406 60.000 0.00 0.00 0.00 4.63
1459 1490 3.428725 GGAGATATGGCAGAGCTACGATG 60.429 52.174 0.00 0.00 0.00 3.84
1602 5553 4.643387 GACACCAGCACGGGCCTT 62.643 66.667 5.73 0.00 42.56 4.35
1614 5565 1.144936 GGGCCTTCAGATCCTGACG 59.855 63.158 0.84 0.00 40.46 4.35
1827 5778 4.289101 TGGGTCGAGGGGTCGTCA 62.289 66.667 0.00 0.00 0.00 4.35
1950 5907 3.239253 AGGTGCCTCGACGGGTTT 61.239 61.111 0.00 0.00 0.00 3.27
2008 5965 4.821589 GCGTGAGGAAGGAGGCGG 62.822 72.222 0.00 0.00 0.00 6.13
2138 6095 3.052082 CAACTGCTCCTGCACGGG 61.052 66.667 2.86 0.00 45.31 5.28
2149 6106 0.107897 CTGCACGGGGTATGCTTACA 60.108 55.000 11.47 0.00 43.77 2.41
2289 6255 3.582444 ACGTACGTCTGCTTCTATACG 57.418 47.619 16.72 0.00 40.81 3.06
2291 6257 4.112634 ACGTACGTCTGCTTCTATACGTA 58.887 43.478 16.72 0.00 45.85 3.57
2293 6259 3.959573 ACGTCTGCTTCTATACGTACC 57.040 47.619 0.00 0.00 45.85 3.34
2294 6260 3.273434 ACGTCTGCTTCTATACGTACCA 58.727 45.455 0.00 0.00 45.85 3.25
2296 6262 5.059161 ACGTCTGCTTCTATACGTACCATA 58.941 41.667 0.00 0.00 45.85 2.74
2299 6265 7.388776 ACGTCTGCTTCTATACGTACCATATAA 59.611 37.037 0.00 0.00 45.85 0.98
2300 6266 7.903946 CGTCTGCTTCTATACGTACCATATAAG 59.096 40.741 0.00 0.00 0.00 1.73
2301 6267 8.728833 GTCTGCTTCTATACGTACCATATAAGT 58.271 37.037 0.00 0.00 0.00 2.24
2303 6269 8.400184 TGCTTCTATACGTACCATATAAGTGT 57.600 34.615 0.00 0.00 0.00 3.55
2304 6270 8.294577 TGCTTCTATACGTACCATATAAGTGTG 58.705 37.037 0.00 0.00 0.00 3.82
2306 6272 7.748691 TCTATACGTACCATATAAGTGTGCA 57.251 36.000 0.00 0.00 0.00 4.57
2307 6273 8.168790 TCTATACGTACCATATAAGTGTGCAA 57.831 34.615 0.00 0.00 0.00 4.08
2308 6274 8.631797 TCTATACGTACCATATAAGTGTGCAAA 58.368 33.333 0.00 0.00 0.00 3.68
2309 6275 9.251792 CTATACGTACCATATAAGTGTGCAAAA 57.748 33.333 0.00 0.00 0.00 2.44
2310 6276 6.804770 ACGTACCATATAAGTGTGCAAAAA 57.195 33.333 0.00 0.00 0.00 1.94
2325 6291 3.334413 AAAAACGTAGCTCCCACCC 57.666 52.632 0.00 0.00 0.00 4.61
2505 7413 6.664515 TGCTTTCCTATTACAACGTTCAAAG 58.335 36.000 0.00 0.00 0.00 2.77
2544 7454 7.824704 ATCACAAGCTATAGAATAGCAATCG 57.175 36.000 18.40 7.99 42.68 3.34
2650 8595 2.028925 GGTTGCAACCCGCCTTTG 59.971 61.111 34.36 0.00 43.43 2.77
2653 8598 1.152735 TTGCAACCCGCCTTTGGTA 60.153 52.632 0.00 0.00 41.33 3.25
2665 8610 2.427095 GCCTTTGGTACCAGCAATAAGG 59.573 50.000 27.68 27.68 36.92 2.69
2684 8629 7.938140 ATAAGGCAAAACTAAGTGCTAATGA 57.062 32.000 0.00 0.00 40.70 2.57
2696 8689 2.030946 GTGCTAATGATTCCGCTGTCAC 59.969 50.000 1.96 0.00 0.00 3.67
2752 8773 4.386652 CGTCAGCAATGAAATTTCCTTTGG 59.613 41.667 22.40 12.87 31.22 3.28
2785 8810 3.294493 CACCCGTTGTGCCCCTTG 61.294 66.667 0.00 0.00 38.34 3.61
2798 8824 2.373169 TGCCCCTTGGTAGATCATGATC 59.627 50.000 25.42 25.42 38.09 2.92
2802 8828 5.068636 CCCCTTGGTAGATCATGATCAAAG 58.931 45.833 31.99 25.87 40.22 2.77
2806 8832 6.261826 CCTTGGTAGATCATGATCAAAGGAAC 59.738 42.308 31.44 21.68 40.22 3.62
2861 9395 3.465871 GTCAGCTCCATCCTTCATTCTC 58.534 50.000 0.00 0.00 0.00 2.87
2883 9417 2.555227 CCTCTTTGCATTAGGTGGGTGT 60.555 50.000 0.00 0.00 0.00 4.16
2909 9444 9.713713 TGCATTAACATAATTAGCCGTTATAGA 57.286 29.630 6.01 0.00 0.00 1.98
2942 9480 1.723220 GAGGTTTGGTACGCCTCTTC 58.277 55.000 13.64 0.00 43.93 2.87
2995 9534 6.831353 CCTATTCCACCATAAATACCACACAA 59.169 38.462 0.00 0.00 0.00 3.33
3017 9556 6.267699 ACAATTATAGTGATCATCTCCCGTGA 59.732 38.462 0.00 0.00 0.00 4.35
3021 9560 3.632333 AGTGATCATCTCCCGTGAGTTA 58.368 45.455 0.00 0.00 39.75 2.24
3098 9640 0.532417 ACCTCTCCCGTACGATCGAG 60.532 60.000 24.34 17.18 0.00 4.04
3149 9692 1.780309 TCCCAACTTCTCCCACACATT 59.220 47.619 0.00 0.00 0.00 2.71
3288 9854 1.001633 GTCCCATGAAGTGTACACCGT 59.998 52.381 22.28 10.92 0.00 4.83
3297 9863 3.844577 AGTGTACACCGTACAAGCTAG 57.155 47.619 22.28 0.00 0.00 3.42
3303 9869 2.289257 ACACCGTACAAGCTAGTTTCCC 60.289 50.000 0.00 0.00 0.00 3.97
3310 9876 5.411669 CGTACAAGCTAGTTTCCCAATCTTT 59.588 40.000 0.00 0.00 0.00 2.52
3316 9882 2.889512 AGTTTCCCAATCTTTCCCCAC 58.110 47.619 0.00 0.00 0.00 4.61
3357 9923 7.068226 GCTTCTACCCATACCATTTGTGTATTT 59.932 37.037 0.00 0.00 0.00 1.40
3443 10011 6.817140 ACCGTTTTTAGTATAGCTCCAAGAAG 59.183 38.462 0.00 0.00 0.00 2.85
3551 10119 0.042131 ATCCCACCCGTTCCTGACTA 59.958 55.000 0.00 0.00 0.00 2.59
3910 10501 4.285807 TCTTGACATTTTGGAACACACG 57.714 40.909 0.00 0.00 39.29 4.49
3938 10529 0.753848 CATGCCATCCAGTGCATCCA 60.754 55.000 0.00 0.00 45.98 3.41
4043 10639 2.309613 GCATGGCATAAGTTGGGATCA 58.690 47.619 0.00 0.00 0.00 2.92
4067 10663 9.033481 TCACTTGAAAAACATATTTGAGCAAAG 57.967 29.630 1.92 0.00 33.32 2.77
4092 10783 7.939588 AGTTTCCTTTCCTCCAGCATATAATAC 59.060 37.037 0.00 0.00 0.00 1.89
4475 11548 3.449737 CCTTGACCCGGTACTCATTTCTA 59.550 47.826 0.00 0.00 0.00 2.10
4523 11596 4.159321 TGCAAGAACCAACAACAAGATCAA 59.841 37.500 0.00 0.00 0.00 2.57
4594 11667 8.752187 TCTTGCTGATACTCACATGCATATATA 58.248 33.333 0.00 0.00 0.00 0.86
4649 11722 2.740981 GAGACAACACCTCTCTGCAATG 59.259 50.000 0.00 0.00 32.75 2.82
4677 11750 6.877668 TTGGGTTGTTCATATGTCCTACTA 57.122 37.500 1.90 0.00 0.00 1.82
4692 11765 4.635765 GTCCTACTATTGAGTTTGCATGCA 59.364 41.667 18.46 18.46 37.10 3.96
4785 16703 8.712228 AGTCTGGGATCAAAGTTTAGAATTTT 57.288 30.769 0.00 0.00 0.00 1.82
4835 16753 4.379394 GCTGCAACGAATAGTTTCCATGAA 60.379 41.667 0.00 0.00 42.02 2.57
4852 16770 3.731652 TGAAACCAACATGCTTGGAAG 57.268 42.857 24.75 7.32 42.06 3.46
4871 16789 3.229697 AGAGGAGGTTTTGGGAAAGTG 57.770 47.619 0.00 0.00 0.00 3.16
5190 23295 7.996644 AGTCTAGACAAATTCCTTTTTGGTACA 59.003 33.333 24.44 0.00 40.20 2.90
5278 23432 6.859112 TGGCTCCCTAGATGATTTATACTC 57.141 41.667 0.00 0.00 0.00 2.59
5440 23594 1.671328 TGCTAGACTCGGAGATGAACG 59.329 52.381 12.86 0.00 33.89 3.95
5545 23702 2.841442 AGTAACTCACAGTGGCCTTC 57.159 50.000 3.32 0.00 0.00 3.46
5608 23766 6.629291 CGCCCCAACTATTTTGGTTGATTTAT 60.629 38.462 7.96 0.00 44.58 1.40
5638 23796 9.994432 GAATCCTGAACTACAAAACTATCAATG 57.006 33.333 0.00 0.00 0.00 2.82
5877 24076 5.452078 TGCTGAATTTTGTTCTTACCCTG 57.548 39.130 0.00 0.00 0.00 4.45
6025 24231 1.933181 GATTGCATGGATGTCGTTCGA 59.067 47.619 0.00 0.00 0.00 3.71
6174 24385 9.190317 GTATTTCCCTCATCTCCTAACATTTTT 57.810 33.333 0.00 0.00 0.00 1.94
6215 24426 4.951094 ACCAAAGCACTAACCAAGTAAACA 59.049 37.500 0.00 0.00 35.76 2.83
6217 24428 6.149633 CCAAAGCACTAACCAAGTAAACATC 58.850 40.000 0.00 0.00 35.76 3.06
6295 24507 1.031571 TGGACCAAGCGCATCATTCC 61.032 55.000 11.47 9.18 0.00 3.01
6687 24915 6.502138 TGGAACCTATGGAAAGATGGAAAAT 58.498 36.000 0.00 0.00 0.00 1.82
6715 24943 4.098960 GGATTTCATGGATGCAACACTCAT 59.901 41.667 0.00 0.00 0.00 2.90
6749 24977 3.480470 CCCTGATGAAGTGTCAAAGTGT 58.520 45.455 0.00 0.00 37.30 3.55
6776 25004 3.321396 ACATTGGATTGATGTGTGTGCAA 59.679 39.130 0.00 0.00 36.43 4.08
6923 25151 1.486310 TCTACCAATGGTGCTAGCCTG 59.514 52.381 16.41 1.76 36.19 4.85
6968 25196 2.168728 GACTGGCCTAAGGTTCTGGTAG 59.831 54.545 3.32 0.00 0.00 3.18
7090 25318 4.223144 AGGGTGTGGAGCTTTATTGTTTT 58.777 39.130 0.00 0.00 0.00 2.43
7091 25319 5.390387 AGGGTGTGGAGCTTTATTGTTTTA 58.610 37.500 0.00 0.00 0.00 1.52
7294 25522 3.644823 TGTTGCATCATTTCAACTGCAG 58.355 40.909 13.48 13.48 44.61 4.41
7384 25613 1.272480 GGGTAACATGGGGCAAGTTCT 60.272 52.381 0.00 0.00 39.74 3.01
7438 25667 6.748132 ACCAAACTCACATCCTTTAACATTG 58.252 36.000 0.00 0.00 0.00 2.82
7482 25711 7.397476 AGAACTAGAATCACATCCTACAAGACA 59.603 37.037 0.00 0.00 0.00 3.41
7485 25714 9.373450 ACTAGAATCACATCCTACAAGACATAT 57.627 33.333 0.00 0.00 0.00 1.78
7558 25788 4.202357 ACATGCAGTTAGAAAGGTCAGTCA 60.202 41.667 0.00 0.00 0.00 3.41
7658 25888 1.075374 AGGGACATAGTTGGCAAGCAA 59.925 47.619 0.00 0.00 29.63 3.91
7674 25904 2.563702 AGCAAACAATTGGGTGCAAAG 58.436 42.857 27.36 5.74 39.50 2.77
7691 25921 3.243636 GCAAAGGGATGCAATGGATGTAG 60.244 47.826 0.00 0.00 45.70 2.74
7842 26072 5.246203 TGAAGCTACTTCTAGCCTTCTTGAA 59.754 40.000 8.66 0.00 46.01 2.69
7883 26113 2.972625 TGCTAGCCACATGTCAACTAC 58.027 47.619 13.29 0.00 0.00 2.73
7939 26172 5.222079 TCTGCTACATGTAAAGTTGTGGA 57.778 39.130 7.06 0.00 0.00 4.02
7943 26176 5.175859 GCTACATGTAAAGTTGTGGAGCTA 58.824 41.667 7.06 0.00 43.55 3.32
7944 26177 5.817816 GCTACATGTAAAGTTGTGGAGCTAT 59.182 40.000 7.06 0.00 43.55 2.97
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 4.828925 GCTCCGCTGGCTCTCCAC 62.829 72.222 0.00 0.00 37.47 4.02
9 10 4.828925 GTGCTCCGCTGGCTCTCC 62.829 72.222 0.00 0.00 0.00 3.71
16 17 2.874010 CTACCTCACGTGCTCCGCTG 62.874 65.000 11.67 0.00 41.42 5.18
17 18 2.675423 TACCTCACGTGCTCCGCT 60.675 61.111 11.67 0.00 41.42 5.52
18 19 1.651240 TACTACCTCACGTGCTCCGC 61.651 60.000 11.67 0.00 41.42 5.54
19 20 0.098376 GTACTACCTCACGTGCTCCG 59.902 60.000 11.67 0.00 44.03 4.63
20 21 0.098376 CGTACTACCTCACGTGCTCC 59.902 60.000 11.67 0.00 33.56 4.70
21 22 0.098376 CCGTACTACCTCACGTGCTC 59.902 60.000 11.67 0.00 36.44 4.26
22 23 1.930908 GCCGTACTACCTCACGTGCT 61.931 60.000 11.67 0.00 36.44 4.40
23 24 1.515736 GCCGTACTACCTCACGTGC 60.516 63.158 11.67 0.00 36.44 5.34
24 25 0.179171 CTGCCGTACTACCTCACGTG 60.179 60.000 9.94 9.94 36.44 4.49
25 26 1.930908 GCTGCCGTACTACCTCACGT 61.931 60.000 0.00 0.00 36.44 4.49
26 27 1.226603 GCTGCCGTACTACCTCACG 60.227 63.158 0.00 0.00 37.89 4.35
27 28 0.179134 CAGCTGCCGTACTACCTCAC 60.179 60.000 0.00 0.00 0.00 3.51
28 29 1.945354 GCAGCTGCCGTACTACCTCA 61.945 60.000 28.76 0.00 34.31 3.86
29 30 1.227002 GCAGCTGCCGTACTACCTC 60.227 63.158 28.76 0.00 34.31 3.85
30 31 2.893398 GCAGCTGCCGTACTACCT 59.107 61.111 28.76 0.00 34.31 3.08
31 32 2.582498 CGCAGCTGCCGTACTACC 60.582 66.667 32.07 2.46 37.91 3.18
44 45 2.102357 ATCACGTACCTCGCGCAG 59.898 61.111 8.75 3.84 44.19 5.18
45 46 2.202557 CATCACGTACCTCGCGCA 60.203 61.111 8.75 0.00 44.19 6.09
46 47 2.101575 TCATCACGTACCTCGCGC 59.898 61.111 0.00 0.00 44.19 6.86
47 48 1.933041 CGTCATCACGTACCTCGCG 60.933 63.158 0.00 0.00 44.19 5.87
48 49 1.585521 CCGTCATCACGTACCTCGC 60.586 63.158 0.00 0.00 45.17 5.03
49 50 1.063649 CCCGTCATCACGTACCTCG 59.936 63.158 0.00 0.00 45.17 4.63
50 51 1.226888 GCCCGTCATCACGTACCTC 60.227 63.158 0.00 0.00 45.17 3.85
51 52 2.718073 GGCCCGTCATCACGTACCT 61.718 63.158 0.00 0.00 45.17 3.08
52 53 2.202837 GGCCCGTCATCACGTACC 60.203 66.667 0.00 0.00 45.17 3.34
53 54 2.581409 CGGCCCGTCATCACGTAC 60.581 66.667 0.00 0.00 45.17 3.67
54 55 3.829044 CCGGCCCGTCATCACGTA 61.829 66.667 0.85 0.00 45.17 3.57
56 57 4.873129 CTCCGGCCCGTCATCACG 62.873 72.222 0.85 0.00 46.29 4.35
57 58 4.530857 CCTCCGGCCCGTCATCAC 62.531 72.222 0.85 0.00 0.00 3.06
59 60 3.782443 AACCTCCGGCCCGTCATC 61.782 66.667 0.85 0.00 0.00 2.92
60 61 4.096003 CAACCTCCGGCCCGTCAT 62.096 66.667 0.85 0.00 0.00 3.06
62 63 4.452733 CTCAACCTCCGGCCCGTC 62.453 72.222 0.85 0.00 0.00 4.79
65 66 3.327404 TTCCTCAACCTCCGGCCC 61.327 66.667 0.00 0.00 0.00 5.80
66 67 2.269241 CTTCCTCAACCTCCGGCC 59.731 66.667 0.00 0.00 0.00 6.13
67 68 2.269241 CCTTCCTCAACCTCCGGC 59.731 66.667 0.00 0.00 0.00 6.13
68 69 2.990479 CCCTTCCTCAACCTCCGG 59.010 66.667 0.00 0.00 0.00 5.14
69 70 2.269241 GCCCTTCCTCAACCTCCG 59.731 66.667 0.00 0.00 0.00 4.63
70 71 2.677848 GGCCCTTCCTCAACCTCC 59.322 66.667 0.00 0.00 0.00 4.30
71 72 2.677848 GGGCCCTTCCTCAACCTC 59.322 66.667 17.04 0.00 34.39 3.85
72 73 2.941583 GGGGCCCTTCCTCAACCT 60.942 66.667 24.38 0.00 34.56 3.50
73 74 4.426313 CGGGGCCCTTCCTCAACC 62.426 72.222 24.38 0.00 33.78 3.77
77 78 3.585525 AAAAGCGGGGCCCTTCCTC 62.586 63.158 24.38 2.70 34.39 3.71
78 79 3.585525 GAAAAGCGGGGCCCTTCCT 62.586 63.158 24.38 12.71 34.39 3.36
79 80 3.068691 GAAAAGCGGGGCCCTTCC 61.069 66.667 24.38 10.36 0.00 3.46
80 81 2.035783 AGAAAAGCGGGGCCCTTC 59.964 61.111 24.38 17.21 0.00 3.46
81 82 2.035783 GAGAAAAGCGGGGCCCTT 59.964 61.111 24.38 7.47 0.00 3.95
82 83 4.048470 GGAGAAAAGCGGGGCCCT 62.048 66.667 24.38 0.00 0.00 5.19
86 87 3.127533 CAGCGGAGAAAAGCGGGG 61.128 66.667 0.00 0.00 38.61 5.73
87 88 2.358737 ACAGCGGAGAAAAGCGGG 60.359 61.111 0.00 0.00 38.61 6.13
88 89 2.680913 CCACAGCGGAGAAAAGCGG 61.681 63.158 0.00 0.00 36.56 5.52
89 90 2.680913 CCCACAGCGGAGAAAAGCG 61.681 63.158 0.00 0.00 36.56 4.68
90 91 2.335712 CCCCACAGCGGAGAAAAGC 61.336 63.158 0.00 0.00 36.56 3.51
91 92 0.250727 TTCCCCACAGCGGAGAAAAG 60.251 55.000 0.00 0.00 36.56 2.27
92 93 0.250727 CTTCCCCACAGCGGAGAAAA 60.251 55.000 0.00 0.00 36.56 2.29
93 94 1.125093 TCTTCCCCACAGCGGAGAAA 61.125 55.000 0.00 0.00 36.56 2.52
94 95 1.535444 TCTTCCCCACAGCGGAGAA 60.535 57.895 0.00 0.00 36.56 2.87
95 96 2.119611 TCTTCCCCACAGCGGAGA 59.880 61.111 0.00 0.00 36.56 3.71
96 97 2.266055 GTCTTCCCCACAGCGGAG 59.734 66.667 0.00 0.00 36.56 4.63
97 98 3.319198 GGTCTTCCCCACAGCGGA 61.319 66.667 0.00 0.00 36.56 5.54
110 111 1.821061 CGTCCTGCAAGACTGGGTCT 61.821 60.000 13.41 0.00 45.64 3.85
111 112 1.374758 CGTCCTGCAAGACTGGGTC 60.375 63.158 13.41 0.00 37.94 4.46
112 113 1.837051 TCGTCCTGCAAGACTGGGT 60.837 57.895 13.41 0.00 37.94 4.51
113 114 1.374758 GTCGTCCTGCAAGACTGGG 60.375 63.158 13.41 0.00 37.94 4.45
114 115 1.734477 CGTCGTCCTGCAAGACTGG 60.734 63.158 13.41 0.00 38.71 4.00
115 116 1.004277 GTCGTCGTCCTGCAAGACTG 61.004 60.000 13.41 7.30 34.07 3.51
116 117 1.286260 GTCGTCGTCCTGCAAGACT 59.714 57.895 13.41 0.00 34.07 3.24
117 118 2.081212 CGTCGTCGTCCTGCAAGAC 61.081 63.158 5.31 5.31 34.07 3.01
118 119 2.254350 CGTCGTCGTCCTGCAAGA 59.746 61.111 0.00 0.00 34.07 3.02
129 130 2.162921 TTCGTGTCCTCGACGTCGTC 62.163 60.000 34.40 22.73 39.58 4.20
130 131 2.246739 TTCGTGTCCTCGACGTCGT 61.247 57.895 34.40 0.00 39.58 4.34
131 132 1.791283 GTTCGTGTCCTCGACGTCG 60.791 63.158 31.30 31.30 39.58 5.12
132 133 1.791283 CGTTCGTGTCCTCGACGTC 60.791 63.158 5.18 5.18 39.58 4.34
133 134 2.250485 CGTTCGTGTCCTCGACGT 59.750 61.111 0.00 0.00 39.58 4.34
134 135 2.501222 CCGTTCGTGTCCTCGACG 60.501 66.667 0.00 0.00 39.58 5.12
135 136 2.804090 GCCGTTCGTGTCCTCGAC 60.804 66.667 0.00 0.00 39.58 4.20
136 137 4.394078 CGCCGTTCGTGTCCTCGA 62.394 66.667 0.00 0.00 38.08 4.04
138 139 3.966026 CTCCGCCGTTCGTGTCCTC 62.966 68.421 0.00 0.00 36.19 3.71
139 140 4.052229 CTCCGCCGTTCGTGTCCT 62.052 66.667 0.00 0.00 36.19 3.85
140 141 4.353437 ACTCCGCCGTTCGTGTCC 62.353 66.667 0.00 0.00 36.19 4.02
141 142 3.103911 CACTCCGCCGTTCGTGTC 61.104 66.667 0.00 0.00 36.19 3.67
142 143 3.553437 CTCACTCCGCCGTTCGTGT 62.553 63.158 0.00 0.00 36.19 4.49
143 144 2.805353 CTCACTCCGCCGTTCGTG 60.805 66.667 0.00 0.00 36.19 4.35
144 145 2.359570 AAACTCACTCCGCCGTTCGT 62.360 55.000 0.00 0.00 36.19 3.85
145 146 1.219522 AAAACTCACTCCGCCGTTCG 61.220 55.000 0.00 0.00 38.08 3.95
146 147 0.234884 CAAAACTCACTCCGCCGTTC 59.765 55.000 0.00 0.00 0.00 3.95
147 148 1.782028 GCAAAACTCACTCCGCCGTT 61.782 55.000 0.00 0.00 0.00 4.44
148 149 2.251642 GCAAAACTCACTCCGCCGT 61.252 57.895 0.00 0.00 0.00 5.68
149 150 2.556287 GCAAAACTCACTCCGCCG 59.444 61.111 0.00 0.00 0.00 6.46
150 151 2.556287 CGCAAAACTCACTCCGCC 59.444 61.111 0.00 0.00 0.00 6.13
151 152 2.556287 CCGCAAAACTCACTCCGC 59.444 61.111 0.00 0.00 0.00 5.54
152 153 1.301401 TCCCGCAAAACTCACTCCG 60.301 57.895 0.00 0.00 0.00 4.63
153 154 1.566018 CGTCCCGCAAAACTCACTCC 61.566 60.000 0.00 0.00 0.00 3.85
154 155 0.599204 TCGTCCCGCAAAACTCACTC 60.599 55.000 0.00 0.00 0.00 3.51
155 156 0.179067 TTCGTCCCGCAAAACTCACT 60.179 50.000 0.00 0.00 0.00 3.41
156 157 0.658897 TTTCGTCCCGCAAAACTCAC 59.341 50.000 0.00 0.00 0.00 3.51
157 158 1.380524 TTTTCGTCCCGCAAAACTCA 58.619 45.000 0.00 0.00 0.00 3.41
158 159 2.478547 TTTTTCGTCCCGCAAAACTC 57.521 45.000 0.00 0.00 28.71 3.01
175 176 2.095263 CCGCATCGAATGACACCTTTTT 60.095 45.455 0.00 0.00 0.00 1.94
176 177 1.468520 CCGCATCGAATGACACCTTTT 59.531 47.619 0.00 0.00 0.00 2.27
177 178 1.086696 CCGCATCGAATGACACCTTT 58.913 50.000 0.00 0.00 0.00 3.11
178 179 0.249120 TCCGCATCGAATGACACCTT 59.751 50.000 0.00 0.00 0.00 3.50
179 180 0.179100 CTCCGCATCGAATGACACCT 60.179 55.000 0.00 0.00 0.00 4.00
180 181 0.460284 ACTCCGCATCGAATGACACC 60.460 55.000 0.00 0.00 0.00 4.16
181 182 0.647410 CACTCCGCATCGAATGACAC 59.353 55.000 0.00 0.00 0.00 3.67
182 183 0.530288 TCACTCCGCATCGAATGACA 59.470 50.000 0.00 0.00 0.00 3.58
183 184 1.324736 GTTCACTCCGCATCGAATGAC 59.675 52.381 0.00 0.00 0.00 3.06
184 185 1.067213 TGTTCACTCCGCATCGAATGA 60.067 47.619 0.00 0.00 0.00 2.57
185 186 1.358877 TGTTCACTCCGCATCGAATG 58.641 50.000 0.00 0.00 0.00 2.67
186 187 2.205074 GATGTTCACTCCGCATCGAAT 58.795 47.619 0.00 0.00 31.25 3.34
187 188 1.067213 TGATGTTCACTCCGCATCGAA 60.067 47.619 0.00 0.00 41.17 3.71
188 189 0.530288 TGATGTTCACTCCGCATCGA 59.470 50.000 0.00 0.00 41.17 3.59
189 190 0.926155 CTGATGTTCACTCCGCATCG 59.074 55.000 0.00 0.00 41.17 3.84
190 191 1.929836 GTCTGATGTTCACTCCGCATC 59.070 52.381 0.00 0.00 39.37 3.91
191 192 1.737029 CGTCTGATGTTCACTCCGCAT 60.737 52.381 0.00 0.00 0.00 4.73
192 193 0.388520 CGTCTGATGTTCACTCCGCA 60.389 55.000 0.00 0.00 0.00 5.69
193 194 0.109272 TCGTCTGATGTTCACTCCGC 60.109 55.000 0.00 0.00 0.00 5.54
194 195 1.068541 TGTCGTCTGATGTTCACTCCG 60.069 52.381 0.00 0.00 0.00 4.63
195 196 2.029828 AGTGTCGTCTGATGTTCACTCC 60.030 50.000 17.47 2.52 31.81 3.85
196 197 3.290308 AGTGTCGTCTGATGTTCACTC 57.710 47.619 17.47 4.02 31.81 3.51
197 198 3.735237 AAGTGTCGTCTGATGTTCACT 57.265 42.857 17.47 17.47 37.68 3.41
198 199 3.121328 CGAAAGTGTCGTCTGATGTTCAC 60.121 47.826 14.77 14.77 45.09 3.18
199 200 3.049912 CGAAAGTGTCGTCTGATGTTCA 58.950 45.455 0.00 0.00 45.09 3.18
200 201 3.689897 CGAAAGTGTCGTCTGATGTTC 57.310 47.619 0.00 0.00 45.09 3.18
215 216 9.774742 CCAGATCTTTTCTAATTTTACCGAAAG 57.225 33.333 0.00 0.00 31.77 2.62
216 217 9.292195 ACCAGATCTTTTCTAATTTTACCGAAA 57.708 29.630 0.00 0.00 31.77 3.46
217 218 8.726988 CACCAGATCTTTTCTAATTTTACCGAA 58.273 33.333 0.00 0.00 31.77 4.30
218 219 7.881232 ACACCAGATCTTTTCTAATTTTACCGA 59.119 33.333 0.00 0.00 31.77 4.69
219 220 7.962918 CACACCAGATCTTTTCTAATTTTACCG 59.037 37.037 0.00 0.00 31.77 4.02
220 221 7.755373 GCACACCAGATCTTTTCTAATTTTACC 59.245 37.037 0.00 0.00 31.77 2.85
221 222 7.755373 GGCACACCAGATCTTTTCTAATTTTAC 59.245 37.037 0.00 0.00 35.26 2.01
222 223 7.450014 TGGCACACCAGATCTTTTCTAATTTTA 59.550 33.333 0.00 0.00 42.67 1.52
223 224 6.267471 TGGCACACCAGATCTTTTCTAATTTT 59.733 34.615 0.00 0.00 42.67 1.82
224 225 5.774690 TGGCACACCAGATCTTTTCTAATTT 59.225 36.000 0.00 0.00 42.67 1.82
225 226 5.324409 TGGCACACCAGATCTTTTCTAATT 58.676 37.500 0.00 0.00 42.67 1.40
226 227 4.922206 TGGCACACCAGATCTTTTCTAAT 58.078 39.130 0.00 0.00 42.67 1.73
227 228 4.365514 TGGCACACCAGATCTTTTCTAA 57.634 40.909 0.00 0.00 42.67 2.10
229 230 2.957402 TGGCACACCAGATCTTTTCT 57.043 45.000 0.00 0.00 42.67 2.52
239 240 3.243234 CGAAATTTGTAACTGGCACACCA 60.243 43.478 0.00 0.00 46.51 4.17
240 241 3.243267 ACGAAATTTGTAACTGGCACACC 60.243 43.478 0.00 0.00 0.00 4.16
241 242 3.959943 ACGAAATTTGTAACTGGCACAC 58.040 40.909 0.00 0.00 0.00 3.82
242 243 4.575236 TGTACGAAATTTGTAACTGGCACA 59.425 37.500 0.00 0.00 0.00 4.57
243 244 5.098218 TGTACGAAATTTGTAACTGGCAC 57.902 39.130 0.00 0.00 0.00 5.01
244 245 5.752892 TTGTACGAAATTTGTAACTGGCA 57.247 34.783 0.00 0.00 0.00 4.92
245 246 5.571357 CCATTGTACGAAATTTGTAACTGGC 59.429 40.000 0.00 0.00 0.00 4.85
246 247 6.904498 TCCATTGTACGAAATTTGTAACTGG 58.096 36.000 0.00 9.28 0.00 4.00
247 248 8.964420 AATCCATTGTACGAAATTTGTAACTG 57.036 30.769 0.00 0.00 0.00 3.16
303 304 8.816640 ATGTTTTTGTGCGATTAGAGATTTTT 57.183 26.923 0.00 0.00 0.00 1.94
304 305 9.559958 CTATGTTTTTGTGCGATTAGAGATTTT 57.440 29.630 0.00 0.00 0.00 1.82
305 306 8.730680 ACTATGTTTTTGTGCGATTAGAGATTT 58.269 29.630 0.00 0.00 0.00 2.17
306 307 8.268850 ACTATGTTTTTGTGCGATTAGAGATT 57.731 30.769 0.00 0.00 0.00 2.40
307 308 7.849804 ACTATGTTTTTGTGCGATTAGAGAT 57.150 32.000 0.00 0.00 0.00 2.75
308 309 8.942338 ATACTATGTTTTTGTGCGATTAGAGA 57.058 30.769 0.00 0.00 0.00 3.10
311 312 9.864034 CCTTATACTATGTTTTTGTGCGATTAG 57.136 33.333 0.00 0.00 0.00 1.73
312 313 8.339714 GCCTTATACTATGTTTTTGTGCGATTA 58.660 33.333 0.00 0.00 0.00 1.75
313 314 7.067008 AGCCTTATACTATGTTTTTGTGCGATT 59.933 33.333 0.00 0.00 0.00 3.34
314 315 6.542370 AGCCTTATACTATGTTTTTGTGCGAT 59.458 34.615 0.00 0.00 0.00 4.58
315 316 5.878116 AGCCTTATACTATGTTTTTGTGCGA 59.122 36.000 0.00 0.00 0.00 5.10
316 317 6.119144 AGCCTTATACTATGTTTTTGTGCG 57.881 37.500 0.00 0.00 0.00 5.34
319 320 8.985805 GCGTATAGCCTTATACTATGTTTTTGT 58.014 33.333 2.68 0.00 39.55 2.83
337 338 2.494133 CCTGGAGGGAGAGCGTATAGC 61.494 61.905 0.00 0.00 41.60 2.97
338 339 1.202952 ACCTGGAGGGAGAGCGTATAG 60.203 57.143 0.00 0.00 40.27 1.31
339 340 0.851469 ACCTGGAGGGAGAGCGTATA 59.149 55.000 0.00 0.00 40.27 1.47
340 341 0.032017 AACCTGGAGGGAGAGCGTAT 60.032 55.000 0.00 0.00 40.27 3.06
341 342 0.252103 AAACCTGGAGGGAGAGCGTA 60.252 55.000 0.00 0.00 40.27 4.42
342 343 0.252103 TAAACCTGGAGGGAGAGCGT 60.252 55.000 0.00 0.00 40.27 5.07
343 344 0.902531 TTAAACCTGGAGGGAGAGCG 59.097 55.000 0.00 0.00 40.27 5.03
344 345 3.009143 TCTTTTAAACCTGGAGGGAGAGC 59.991 47.826 0.00 0.00 40.27 4.09
345 346 4.041691 TGTCTTTTAAACCTGGAGGGAGAG 59.958 45.833 0.00 0.00 40.27 3.20
346 347 3.977999 TGTCTTTTAAACCTGGAGGGAGA 59.022 43.478 0.00 0.00 40.27 3.71
347 348 4.072839 GTGTCTTTTAAACCTGGAGGGAG 58.927 47.826 0.00 0.00 40.27 4.30
348 349 3.181437 GGTGTCTTTTAAACCTGGAGGGA 60.181 47.826 0.00 0.00 40.27 4.20
349 350 3.154710 GGTGTCTTTTAAACCTGGAGGG 58.845 50.000 0.00 0.00 40.27 4.30
350 351 4.100279 AGGTGTCTTTTAAACCTGGAGG 57.900 45.455 0.00 0.00 42.78 4.30
351 352 5.001874 GGTAGGTGTCTTTTAAACCTGGAG 58.998 45.833 0.00 0.00 44.13 3.86
352 353 4.202493 GGGTAGGTGTCTTTTAAACCTGGA 60.202 45.833 0.00 0.00 44.13 3.86
353 354 4.077108 GGGTAGGTGTCTTTTAAACCTGG 58.923 47.826 6.11 0.00 44.13 4.45
354 355 4.721132 TGGGTAGGTGTCTTTTAAACCTG 58.279 43.478 6.11 0.00 44.13 4.00
355 356 5.391577 TTGGGTAGGTGTCTTTTAAACCT 57.608 39.130 1.56 1.56 46.14 3.50
356 357 6.097270 ACTTTTGGGTAGGTGTCTTTTAAACC 59.903 38.462 0.00 0.00 0.00 3.27
357 358 7.104043 ACTTTTGGGTAGGTGTCTTTTAAAC 57.896 36.000 0.00 0.00 0.00 2.01
358 359 7.178805 ACAACTTTTGGGTAGGTGTCTTTTAAA 59.821 33.333 0.00 0.00 39.25 1.52
359 360 6.664384 ACAACTTTTGGGTAGGTGTCTTTTAA 59.336 34.615 0.00 0.00 39.25 1.52
360 361 6.189133 ACAACTTTTGGGTAGGTGTCTTTTA 58.811 36.000 0.00 0.00 39.25 1.52
361 362 5.020795 ACAACTTTTGGGTAGGTGTCTTTT 58.979 37.500 0.00 0.00 39.25 2.27
362 363 4.606210 ACAACTTTTGGGTAGGTGTCTTT 58.394 39.130 0.00 0.00 39.25 2.52
363 364 4.245251 ACAACTTTTGGGTAGGTGTCTT 57.755 40.909 0.00 0.00 39.25 3.01
364 365 3.945640 ACAACTTTTGGGTAGGTGTCT 57.054 42.857 0.00 0.00 39.25 3.41
365 366 4.994907 AAACAACTTTTGGGTAGGTGTC 57.005 40.909 0.00 0.00 42.50 3.67
366 367 5.748670 AAAAACAACTTTTGGGTAGGTGT 57.251 34.783 0.00 0.00 45.11 4.16
386 387 6.203338 GCATGATGCCTTTTCTTGAAGAAAAA 59.797 34.615 27.12 16.85 42.64 1.94
387 388 5.697633 GCATGATGCCTTTTCTTGAAGAAAA 59.302 36.000 26.05 26.05 42.97 2.29
388 389 5.232463 GCATGATGCCTTTTCTTGAAGAAA 58.768 37.500 15.81 15.81 38.73 2.52
389 390 4.813027 GCATGATGCCTTTTCTTGAAGAA 58.187 39.130 6.04 3.02 37.42 2.52
390 391 4.445452 GCATGATGCCTTTTCTTGAAGA 57.555 40.909 6.04 0.00 37.42 2.87
403 404 4.197498 AAAGCGCGGGCATGATGC 62.197 61.111 27.20 9.33 44.08 3.91
404 405 2.278336 CAAAGCGCGGGCATGATG 60.278 61.111 27.20 14.71 43.41 3.07
405 406 4.197498 GCAAAGCGCGGGCATGAT 62.197 61.111 27.20 6.74 43.41 2.45
413 414 3.707700 TACGTGTGGCAAAGCGCG 61.708 61.111 0.00 0.00 43.84 6.86
414 415 2.127383 GTACGTGTGGCAAAGCGC 60.127 61.111 0.00 0.00 41.28 5.92
415 416 2.170036 CGTACGTGTGGCAAAGCG 59.830 61.111 7.22 0.00 0.00 4.68
416 417 2.127383 GCGTACGTGTGGCAAAGC 60.127 61.111 17.90 0.00 0.00 3.51
417 418 1.072391 TATGCGTACGTGTGGCAAAG 58.928 50.000 17.90 0.00 40.49 2.77
418 419 1.509703 TTATGCGTACGTGTGGCAAA 58.490 45.000 17.90 7.21 40.49 3.68
419 420 1.728068 ATTATGCGTACGTGTGGCAA 58.272 45.000 17.90 3.51 40.49 4.52
420 421 1.728068 AATTATGCGTACGTGTGGCA 58.272 45.000 17.90 11.49 41.48 4.92
421 422 2.817538 AAATTATGCGTACGTGTGGC 57.182 45.000 17.90 0.00 0.00 5.01
422 423 3.841116 CGTAAATTATGCGTACGTGTGG 58.159 45.455 17.90 0.00 36.68 4.17
431 432 6.007079 CCGTAATGATCACGTAAATTATGCG 58.993 40.000 0.00 0.00 43.36 4.73
432 433 6.304126 CCCGTAATGATCACGTAAATTATGC 58.696 40.000 0.00 0.00 37.71 3.14
433 434 6.147164 AGCCCGTAATGATCACGTAAATTATG 59.853 38.462 0.00 0.00 37.71 1.90
434 435 6.147164 CAGCCCGTAATGATCACGTAAATTAT 59.853 38.462 0.00 0.00 37.71 1.28
435 436 5.464057 CAGCCCGTAATGATCACGTAAATTA 59.536 40.000 0.00 0.00 37.71 1.40
436 437 4.272504 CAGCCCGTAATGATCACGTAAATT 59.727 41.667 0.00 0.00 37.71 1.82
437 438 3.807622 CAGCCCGTAATGATCACGTAAAT 59.192 43.478 0.00 0.00 37.71 1.40
438 439 3.191669 CAGCCCGTAATGATCACGTAAA 58.808 45.455 0.00 0.00 37.71 2.01
439 440 2.482316 CCAGCCCGTAATGATCACGTAA 60.482 50.000 0.00 0.00 37.71 3.18
440 441 1.067974 CCAGCCCGTAATGATCACGTA 59.932 52.381 0.00 0.00 37.71 3.57
441 442 0.179084 CCAGCCCGTAATGATCACGT 60.179 55.000 0.00 0.00 37.71 4.49
442 443 1.498865 GCCAGCCCGTAATGATCACG 61.499 60.000 0.00 0.00 39.10 4.35
443 444 1.166531 GGCCAGCCCGTAATGATCAC 61.167 60.000 0.00 0.00 0.00 3.06
444 445 1.148273 GGCCAGCCCGTAATGATCA 59.852 57.895 0.00 0.00 0.00 2.92
445 446 0.886490 CTGGCCAGCCCGTAATGATC 60.886 60.000 22.33 0.00 35.87 2.92
446 447 1.149174 CTGGCCAGCCCGTAATGAT 59.851 57.895 22.33 0.00 35.87 2.45
447 448 2.589540 CTGGCCAGCCCGTAATGA 59.410 61.111 22.33 0.00 35.87 2.57
448 449 2.343475 ATCCTGGCCAGCCCGTAATG 62.343 60.000 28.39 11.16 35.87 1.90
449 450 2.078665 ATCCTGGCCAGCCCGTAAT 61.079 57.895 28.39 9.83 35.87 1.89
450 451 2.690881 ATCCTGGCCAGCCCGTAA 60.691 61.111 28.39 7.86 35.87 3.18
451 452 3.479203 CATCCTGGCCAGCCCGTA 61.479 66.667 28.39 9.69 35.87 4.02
454 455 3.728292 CTTCCATCCTGGCCAGCCC 62.728 68.421 28.39 0.00 37.47 5.19
455 456 2.123982 CTTCCATCCTGGCCAGCC 60.124 66.667 28.39 0.38 37.47 4.85
456 457 2.123982 CCTTCCATCCTGGCCAGC 60.124 66.667 28.39 0.00 37.47 4.85
457 458 1.867595 AACCCTTCCATCCTGGCCAG 61.868 60.000 26.87 26.87 37.47 4.85
458 459 1.856873 AACCCTTCCATCCTGGCCA 60.857 57.895 4.71 4.71 37.47 5.36
459 460 1.380380 CAACCCTTCCATCCTGGCC 60.380 63.158 0.00 0.00 37.47 5.36
520 521 6.325286 ACTGAAATTTAGCAACACCCCTTTAA 59.675 34.615 0.00 0.00 0.00 1.52
526 527 3.500680 TCGACTGAAATTTAGCAACACCC 59.499 43.478 0.00 0.00 0.00 4.61
527 528 4.213482 AGTCGACTGAAATTTAGCAACACC 59.787 41.667 19.30 0.00 0.00 4.16
544 545 2.527100 CATAACCAAGTCCGAGTCGAC 58.473 52.381 15.64 7.70 0.00 4.20
547 548 1.207329 AGGCATAACCAAGTCCGAGTC 59.793 52.381 0.00 0.00 43.14 3.36
548 549 1.207329 GAGGCATAACCAAGTCCGAGT 59.793 52.381 0.00 0.00 43.14 4.18
549 550 1.207089 TGAGGCATAACCAAGTCCGAG 59.793 52.381 0.00 0.00 43.14 4.63
550 551 1.271856 TGAGGCATAACCAAGTCCGA 58.728 50.000 0.00 0.00 43.14 4.55
551 552 2.107950 TTGAGGCATAACCAAGTCCG 57.892 50.000 0.00 0.00 43.14 4.79
552 553 5.036117 TCTATTGAGGCATAACCAAGTCC 57.964 43.478 0.00 0.00 43.14 3.85
587 588 6.640518 TCTGCACGAATCTTTATAAGGTCTT 58.359 36.000 0.00 0.00 0.00 3.01
589 590 6.903883 TTCTGCACGAATCTTTATAAGGTC 57.096 37.500 0.00 0.00 0.00 3.85
629 632 7.770433 AGTGACATAGCATAGCATGTAAGAAAA 59.230 33.333 0.00 0.00 33.23 2.29
649 653 4.422073 ACCAAGACTCAATCAAGTGACA 57.578 40.909 0.00 0.00 0.00 3.58
674 678 5.592688 GCTAGGTCTCTCAGTCTAGTGAAAT 59.407 44.000 0.00 0.00 33.65 2.17
676 680 4.519213 GCTAGGTCTCTCAGTCTAGTGAA 58.481 47.826 0.00 0.00 33.65 3.18
699 703 6.825213 TGATTTGACCTCTCTAATTGGATGTG 59.175 38.462 0.00 0.00 0.00 3.21
703 707 7.056635 GGAATGATTTGACCTCTCTAATTGGA 58.943 38.462 0.00 0.00 0.00 3.53
711 715 7.169982 CGTACATAAGGAATGATTTGACCTCTC 59.830 40.741 0.00 0.00 39.07 3.20
717 721 9.607988 ACATAACGTACATAAGGAATGATTTGA 57.392 29.630 0.00 0.00 39.07 2.69
815 820 1.139654 TCTCTGCTGTGCTCAAGTTGT 59.860 47.619 2.11 0.00 0.00 3.32
828 833 2.072298 GCATCTCGTTGTTTCTCTGCT 58.928 47.619 0.00 0.00 0.00 4.24
846 851 4.783621 GGCAGAGCGACCATGGCA 62.784 66.667 13.04 0.00 39.18 4.92
946 958 2.162408 GCAAAAGATCTCTGGTTTCCCG 59.838 50.000 0.00 0.00 0.00 5.14
952 964 2.957402 TGTGGCAAAAGATCTCTGGT 57.043 45.000 0.00 0.00 0.00 4.00
954 966 4.409570 CGAAATGTGGCAAAAGATCTCTG 58.590 43.478 0.00 0.00 0.00 3.35
955 967 3.119708 GCGAAATGTGGCAAAAGATCTCT 60.120 43.478 0.00 0.00 0.00 3.10
1042 1058 0.389817 TCATCGGAGTTGCAGGAACG 60.390 55.000 0.00 0.00 39.80 3.95
1070 1086 0.173708 CGAGAGTGGCTTAGTGGGTC 59.826 60.000 0.00 0.00 0.00 4.46
1197 1216 1.277842 ACCCACACATATGTTCGCTCA 59.722 47.619 5.37 0.00 36.72 4.26
1232 1251 0.449388 CAAACTGCTCTTGATCGGGC 59.551 55.000 0.00 0.00 0.00 6.13
1241 1260 2.754664 CTTCCCGGGCAAACTGCTCT 62.755 60.000 18.49 0.00 43.01 4.09
1459 1490 1.737008 GAAAGGTGTCGGTCGGCTC 60.737 63.158 0.00 0.00 0.00 4.70
1563 5514 2.095252 GCTCAAGACGAACTCGCCC 61.095 63.158 0.00 0.00 44.43 6.13
1602 5553 1.657751 CTCGCCACGTCAGGATCTGA 61.658 60.000 0.00 0.00 38.25 3.27
1614 5565 3.053849 GAGAGTCGACCCTCGCCAC 62.054 68.421 11.57 0.00 40.21 5.01
1628 5579 4.914420 CGGCGCGCCAGTAGAGAG 62.914 72.222 45.26 25.41 35.37 3.20
1980 5937 2.328099 CCTCACGCACCCTGCTTTC 61.328 63.158 0.00 0.00 42.25 2.62
2008 5965 4.166011 GTTGCCGCCGCATCTCAC 62.166 66.667 0.00 0.00 46.67 3.51
2081 6038 0.108424 CTCCTCGAAGCTCCTGTTGG 60.108 60.000 0.00 0.00 0.00 3.77
2082 6039 0.605589 ACTCCTCGAAGCTCCTGTTG 59.394 55.000 0.00 0.00 0.00 3.33
2149 6106 2.809601 GATGTCGCTCGCGTTGGT 60.810 61.111 5.77 0.00 40.74 3.67
2274 6240 3.957671 TGGTACGTATAGAAGCAGACG 57.042 47.619 0.00 0.00 41.02 4.18
2276 6242 8.727910 CACTTATATGGTACGTATAGAAGCAGA 58.272 37.037 16.61 0.00 34.37 4.26
2277 6243 8.512956 ACACTTATATGGTACGTATAGAAGCAG 58.487 37.037 16.61 13.53 34.37 4.24
2280 6246 8.294577 TGCACACTTATATGGTACGTATAGAAG 58.705 37.037 15.73 15.73 36.13 2.85
2282 6248 7.748691 TGCACACTTATATGGTACGTATAGA 57.251 36.000 0.00 0.00 0.00 1.98
2283 6249 8.806177 TTTGCACACTTATATGGTACGTATAG 57.194 34.615 0.00 0.00 0.00 1.31
2284 6250 9.597170 TTTTTGCACACTTATATGGTACGTATA 57.403 29.630 0.00 0.00 0.00 1.47
2285 6251 8.495361 TTTTTGCACACTTATATGGTACGTAT 57.505 30.769 0.00 0.00 0.00 3.06
2307 6273 0.475044 TGGGTGGGAGCTACGTTTTT 59.525 50.000 0.00 0.00 0.00 1.94
2308 6274 0.696501 ATGGGTGGGAGCTACGTTTT 59.303 50.000 0.00 0.00 0.00 2.43
2309 6275 1.575419 TATGGGTGGGAGCTACGTTT 58.425 50.000 0.00 0.00 0.00 3.60
2310 6276 1.802553 ATATGGGTGGGAGCTACGTT 58.197 50.000 0.00 0.00 0.00 3.99
2311 6277 1.802553 AATATGGGTGGGAGCTACGT 58.197 50.000 0.00 0.00 0.00 3.57
2312 6278 2.930826 AAATATGGGTGGGAGCTACG 57.069 50.000 0.00 0.00 0.00 3.51
2410 6378 4.102681 AGGGATTGGATAAAGGAACCTACG 59.897 45.833 0.00 0.00 0.00 3.51
2411 6379 5.648330 AGGGATTGGATAAAGGAACCTAC 57.352 43.478 0.00 0.00 0.00 3.18
2467 7363 7.787725 ATAGGAAAGCAAATAAAGTACCTCG 57.212 36.000 0.00 0.00 0.00 4.63
2497 7400 6.780706 TTTTCCTCTTACTAGCTTTGAACG 57.219 37.500 0.00 0.00 0.00 3.95
2505 7413 5.877564 AGCTTGTGATTTTCCTCTTACTAGC 59.122 40.000 0.00 0.00 37.24 3.42
2544 7454 1.334288 CGGCGACCGCAATTTTTGAC 61.334 55.000 16.47 0.00 41.17 3.18
2650 8595 3.509967 AGTTTTGCCTTATTGCTGGTACC 59.490 43.478 4.43 4.43 0.00 3.34
2653 8598 4.832823 ACTTAGTTTTGCCTTATTGCTGGT 59.167 37.500 0.00 0.00 0.00 4.00
2665 8610 5.739161 CGGAATCATTAGCACTTAGTTTTGC 59.261 40.000 0.00 0.00 39.16 3.68
2684 8629 2.183478 TGATGTTGTGACAGCGGAAT 57.817 45.000 0.00 0.00 44.95 3.01
2696 8689 6.847956 AAATTGAATGGTGTGTTGATGTTG 57.152 33.333 0.00 0.00 0.00 3.33
2752 8773 2.109126 GTGCCGTTCTGAGGGATGC 61.109 63.158 1.48 0.00 32.44 3.91
2785 8810 5.684704 TGGTTCCTTTGATCATGATCTACC 58.315 41.667 30.65 24.76 38.60 3.18
2802 8828 2.725221 AGCTGAATGAGGATGGTTCC 57.275 50.000 0.00 0.00 42.96 3.62
2806 8832 5.393461 GGTTTGTTAAGCTGAATGAGGATGG 60.393 44.000 0.00 0.00 0.00 3.51
2861 9395 1.005924 ACCCACCTAATGCAAAGAGGG 59.994 52.381 19.50 19.50 40.88 4.30
2883 9417 9.713713 TCTATAACGGCTAATTATGTTAATGCA 57.286 29.630 0.00 0.00 31.30 3.96
2909 9444 2.747446 CAAACCTCGATGGGAATTCGTT 59.253 45.455 0.00 0.00 41.11 3.85
2942 9480 4.081198 AGCTAGTTCATGAGGGAAAGTCTG 60.081 45.833 0.00 0.00 0.00 3.51
2995 9534 6.013379 ACTCACGGGAGATGATCACTATAAT 58.987 40.000 24.37 0.00 44.26 1.28
3111 9654 7.882179 AGTTGGGAATGTATGAAACAGTTAAC 58.118 34.615 0.00 0.00 42.70 2.01
3288 9854 5.944007 GGAAAGATTGGGAAACTAGCTTGTA 59.056 40.000 0.00 0.00 0.00 2.41
3297 9863 2.604139 TGTGGGGAAAGATTGGGAAAC 58.396 47.619 0.00 0.00 0.00 2.78
3303 9869 5.203528 ACAATCCTATGTGGGGAAAGATTG 58.796 41.667 7.97 7.97 42.89 2.67
3310 9876 1.010793 AGGGACAATCCTATGTGGGGA 59.989 52.381 0.00 0.00 36.57 4.81
3316 9882 3.853355 AGAAGCAGGGACAATCCTATG 57.147 47.619 0.00 0.00 36.57 2.23
3551 10119 7.826744 GGAGAAAGTTTCTGACCTTATTGATCT 59.173 37.037 22.68 0.00 40.87 2.75
3896 10487 4.439563 GGTGAAAGACGTGTGTTCCAAAAT 60.440 41.667 0.00 0.00 0.00 1.82
3910 10501 1.747355 CTGGATGGCATGGTGAAAGAC 59.253 52.381 3.81 0.00 0.00 3.01
3938 10529 4.514401 GGGTGACGAGGACAATTAGAAAT 58.486 43.478 0.00 0.00 0.00 2.17
4043 10639 8.947055 ACTTTGCTCAAATATGTTTTTCAAGT 57.053 26.923 0.00 0.00 0.00 3.16
4067 10663 7.939588 AGTATTATATGCTGGAGGAAAGGAAAC 59.060 37.037 0.00 0.00 0.00 2.78
4092 10783 7.598493 TGAAAATTAGCGGATGGAAAGAAAAAG 59.402 33.333 0.00 0.00 0.00 2.27
4134 10825 3.251004 AGCGATTGTTTTCAGTTCCTGAC 59.749 43.478 0.00 0.00 40.46 3.51
4386 11459 4.683643 ACCTTGTACCCCTTGCAATTTAT 58.316 39.130 0.00 0.00 0.00 1.40
4420 11493 8.520351 TGAATCTACTGTTTCTTCGATAGTCAA 58.480 33.333 0.00 0.00 37.40 3.18
4475 11548 4.993705 TTGTCCCCTGTGAAGAAAGTAT 57.006 40.909 0.00 0.00 0.00 2.12
4523 11596 2.871096 AAATACCACATGGACACCGT 57.129 45.000 4.53 0.00 38.94 4.83
4594 11667 6.322201 CCTCTGGGTTTGCATATACAGAAAAT 59.678 38.462 12.31 0.00 34.90 1.82
4649 11722 4.485163 GACATATGAACAACCCAAAGCAC 58.515 43.478 10.38 0.00 0.00 4.40
4677 11750 7.985184 AGAAAATATCATGCATGCAAACTCAAT 59.015 29.630 26.68 13.55 0.00 2.57
4692 11765 9.797642 TTGATGTATGCCTACAGAAAATATCAT 57.202 29.630 7.89 0.00 41.05 2.45
4763 11852 6.528072 GCGAAAATTCTAAACTTTGATCCCAG 59.472 38.462 0.00 0.00 0.00 4.45
4785 16703 0.447406 TCTTCGAACGTTATCCGCGA 59.553 50.000 8.23 2.34 41.42 5.87
4835 16753 2.158475 TCCTCTTCCAAGCATGTTGGTT 60.158 45.455 19.83 0.00 38.82 3.67
4852 16770 2.945456 ACACTTTCCCAAAACCTCCTC 58.055 47.619 0.00 0.00 0.00 3.71
5278 23432 8.886719 TGTAGATTTTCTTGCATTATCTGTCAG 58.113 33.333 0.00 0.00 0.00 3.51
5440 23594 5.751990 CCATTCCAAAATCTGCTATCTTTGC 59.248 40.000 0.00 0.00 0.00 3.68
5608 23766 6.097915 AGTTTTGTAGTTCAGGATTCGAGA 57.902 37.500 0.00 0.00 0.00 4.04
5638 23796 9.476202 AAAACATTAGAAAGTTCATGGCTTAAC 57.524 29.630 0.00 0.00 0.00 2.01
5861 24060 5.869649 AAGCAACAGGGTAAGAACAAAAT 57.130 34.783 0.00 0.00 0.00 1.82
5877 24076 2.618241 TCACATGTGTGGAGAAAGCAAC 59.382 45.455 24.63 0.00 45.65 4.17
6295 24507 7.588143 AGAAGAAGAATCAGTCATAAACACG 57.412 36.000 0.00 0.00 0.00 4.49
6687 24915 4.466726 TGTTGCATCCATGAAATCCATTGA 59.533 37.500 0.00 0.00 31.94 2.57
6776 25004 0.695347 GCCTAGCATTGGGGCTATCT 59.305 55.000 0.00 0.00 44.78 1.98
6923 25151 0.179134 AGCGACCATCTAGCGTTGTC 60.179 55.000 0.00 0.00 35.78 3.18
7024 25252 9.541884 TCACAAGCATATAGGGAGTATGTATAA 57.458 33.333 0.00 0.00 33.19 0.98
7162 25390 1.065551 GGAGCGCAGAAACACACTTTT 59.934 47.619 11.47 0.00 0.00 2.27
7164 25392 0.463654 TGGAGCGCAGAAACACACTT 60.464 50.000 11.47 0.00 0.00 3.16
7294 25522 1.945354 ATGCAAGTCAGGCTGCATGC 61.945 55.000 22.89 22.89 44.99 4.06
7338 25566 4.223320 TCCAACGAAAGATGAAAAGCAC 57.777 40.909 0.00 0.00 35.71 4.40
7384 25613 6.039493 GGAAGATGTAAATCGTAGTCTCCTCA 59.961 42.308 0.00 0.00 0.00 3.86
7558 25788 4.990526 TCCTTCTCAATGCTCCTCTTTTT 58.009 39.130 0.00 0.00 0.00 1.94
7658 25888 1.799933 TCCCTTTGCACCCAATTGTT 58.200 45.000 4.43 0.00 0.00 2.83
7674 25904 3.777106 TCTCTACATCCATTGCATCCC 57.223 47.619 0.00 0.00 0.00 3.85
7691 25921 3.898123 TCCATAGCCACTACATCCTTCTC 59.102 47.826 0.00 0.00 0.00 2.87
7918 26151 4.142816 GCTCCACAACTTTACATGTAGCAG 60.143 45.833 5.56 8.84 33.42 4.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.