Multiple sequence alignment - TraesCS2D01G537700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G537700 chr2D 100.000 6191 0 0 1 6191 619401550 619407740 0.000000e+00 11433.0
1 TraesCS2D01G537700 chr2D 79.167 600 99 16 3461 4054 619568324 619568903 5.820000e-105 392.0
2 TraesCS2D01G537700 chr2D 76.824 466 98 9 4640 5101 585916351 585916810 2.860000e-63 254.0
3 TraesCS2D01G537700 chr2D 72.010 393 100 7 1880 2267 585914540 585914927 2.360000e-19 108.0
4 TraesCS2D01G537700 chr2D 77.099 131 28 2 3073 3202 585894542 585894413 2.390000e-09 75.0
5 TraesCS2D01G537700 chr2A 94.782 3009 110 31 2745 5741 750556228 750559201 0.000000e+00 4643.0
6 TraesCS2D01G537700 chr2A 95.186 1558 70 3 813 2367 750554270 750555825 0.000000e+00 2457.0
7 TraesCS2D01G537700 chr2A 90.253 277 16 3 2445 2711 750555948 750556223 9.870000e-93 351.0
8 TraesCS2D01G537700 chr2A 85.542 249 36 0 3805 4053 750208555 750208307 1.710000e-65 261.0
9 TraesCS2D01G537700 chr2A 77.056 462 89 13 4651 5108 721008561 721008113 3.710000e-62 250.0
10 TraesCS2D01G537700 chr2A 84.874 238 34 2 3819 4055 720584072 720583836 8.020000e-59 239.0
11 TraesCS2D01G537700 chr2A 83.399 253 42 0 3802 4054 751233988 751234240 1.040000e-57 235.0
12 TraesCS2D01G537700 chr2A 83.806 247 34 4 3812 4053 720224450 720224205 4.830000e-56 230.0
13 TraesCS2D01G537700 chr2A 83.884 242 16 9 366 592 750553735 750553968 6.290000e-50 209.0
14 TraesCS2D01G537700 chr2A 86.826 167 21 1 632 798 750554051 750554216 1.060000e-42 185.0
15 TraesCS2D01G537700 chr2A 77.632 152 32 2 3052 3202 720060923 720060773 2.380000e-14 91.6
16 TraesCS2D01G537700 chr2A 75.740 169 41 0 2099 2267 720520349 720520181 1.110000e-12 86.1
17 TraesCS2D01G537700 chr2A 77.570 107 23 1 3097 3202 52762969 52762863 5.180000e-06 63.9
18 TraesCS2D01G537700 chr2B 91.989 3333 187 35 2745 6009 758800726 758797406 0.000000e+00 4602.0
19 TraesCS2D01G537700 chr2B 91.357 2129 129 23 3666 5765 758112054 758114156 0.000000e+00 2861.0
20 TraesCS2D01G537700 chr2B 96.133 1500 51 5 878 2374 758802498 758801003 0.000000e+00 2442.0
21 TraesCS2D01G537700 chr2B 82.353 425 46 15 5789 6191 758114567 758114984 5.940000e-90 342.0
22 TraesCS2D01G537700 chr2B 89.531 277 19 2 2445 2711 758801007 758800731 5.940000e-90 342.0
23 TraesCS2D01G537700 chr2B 86.817 311 23 5 493 790 758802804 758802499 1.290000e-86 331.0
24 TraesCS2D01G537700 chr2B 76.182 550 115 14 4651 5194 707462252 707461713 6.110000e-70 276.0
25 TraesCS2D01G537700 chr2B 86.809 235 31 0 3818 4052 707959550 707959316 4.760000e-66 263.0
26 TraesCS2D01G537700 chr2B 77.042 453 96 7 4651 5101 707690546 707690100 2.860000e-63 254.0
27 TraesCS2D01G537700 chr2B 76.821 453 98 6 4651 5101 707630855 707630408 1.330000e-61 248.0
28 TraesCS2D01G537700 chr2B 76.275 451 99 7 4654 5102 707414796 707414352 3.730000e-57 233.0
29 TraesCS2D01G537700 chr2B 82.479 234 39 2 3462 3694 707240290 707240058 2.930000e-48 204.0
30 TraesCS2D01G537700 chr2B 72.953 403 99 7 1870 2267 707464230 707463833 1.400000e-26 132.0
31 TraesCS2D01G537700 chr2B 77.863 131 27 2 3073 3202 707415683 707415554 5.140000e-11 80.5
32 TraesCS2D01G537700 chr7D 71.877 1273 324 29 1004 2265 585556501 585557750 2.760000e-88 337.0
33 TraesCS2D01G537700 chr7D 78.333 180 39 0 3023 3202 585558296 585558475 3.920000e-22 117.0
34 TraesCS2D01G537700 chr6B 72.456 904 220 26 1380 2267 675451738 675450848 4.760000e-66 263.0
35 TraesCS2D01G537700 chr7B 79.006 181 36 2 3023 3202 654917753 654917932 8.430000e-24 122.0
36 TraesCS2D01G537700 chr7A 78.022 182 36 3 3023 3202 675588886 675589065 1.820000e-20 111.0
37 TraesCS2D01G537700 chr5D 74.747 198 44 4 3484 3680 438443063 438442871 3.980000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G537700 chr2D 619401550 619407740 6190 False 11433.00 11433 100.0000 1 6191 1 chr2D.!!$F1 6190
1 TraesCS2D01G537700 chr2D 619568324 619568903 579 False 392.00 392 79.1670 3461 4054 1 chr2D.!!$F2 593
2 TraesCS2D01G537700 chr2A 750553735 750559201 5466 False 1569.00 4643 90.1862 366 5741 5 chr2A.!!$F2 5375
3 TraesCS2D01G537700 chr2B 758797406 758802804 5398 True 1929.25 4602 91.1175 493 6009 4 chr2B.!!$R7 5516
4 TraesCS2D01G537700 chr2B 758112054 758114984 2930 False 1601.50 2861 86.8550 3666 6191 2 chr2B.!!$F1 2525
5 TraesCS2D01G537700 chr2B 707461713 707464230 2517 True 204.00 276 74.5675 1870 5194 2 chr2B.!!$R6 3324
6 TraesCS2D01G537700 chr7D 585556501 585558475 1974 False 227.00 337 75.1050 1004 3202 2 chr7D.!!$F1 2198
7 TraesCS2D01G537700 chr6B 675450848 675451738 890 True 263.00 263 72.4560 1380 2267 1 chr6B.!!$R1 887

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
808 865 0.179032 TGCTGTCCACACCGAAACAT 60.179 50.000 0.00 0.00 0.00 2.71 F
1353 1452 0.653323 CAAAGAACAACGTCACGGCG 60.653 55.000 4.80 4.80 37.94 6.46 F
2396 2498 1.003233 GGAGGTTGTGCTGGGAGAC 60.003 63.158 0.00 0.00 0.00 3.36 F
2429 2531 0.246635 AGACTATTGTTGCGCCGTCT 59.753 50.000 4.18 2.55 0.00 4.18 F
2430 2532 0.370273 GACTATTGTTGCGCCGTCTG 59.630 55.000 4.18 0.00 0.00 3.51 F
2441 2543 0.457851 CGCCGTCTGGAGAAGAGATT 59.542 55.000 0.00 0.00 37.19 2.40 F
2442 2544 1.134965 CGCCGTCTGGAGAAGAGATTT 60.135 52.381 0.00 0.00 37.19 2.17 F
3263 3542 1.808945 CTGCCAGAATTGTGGTCTGAC 59.191 52.381 21.71 6.39 44.44 3.51 F
4461 4877 2.686235 TCTTTGCAATTGCCAATTCCG 58.314 42.857 26.94 10.83 41.18 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2382 2484 0.179018 AACCTGTCTCCCAGCACAAC 60.179 55.000 0.00 0.00 40.06 3.32 R
2410 2512 0.246635 AGACGGCGCAACAATAGTCT 59.753 50.000 10.83 8.82 34.54 3.24 R
4098 4510 2.205022 TCCCTGCCAACTTGATTCTG 57.795 50.000 0.00 0.00 0.00 3.02 R
4122 4534 2.241176 CCAGGCAATGGGAGTAAAGGTA 59.759 50.000 0.00 0.00 46.36 3.08 R
4374 4790 6.995091 AGCTCATCCTAAATTACTGAATCACC 59.005 38.462 0.00 0.00 0.00 4.02 R
4376 4792 9.770097 CTAAGCTCATCCTAAATTACTGAATCA 57.230 33.333 0.00 0.00 0.00 2.57 R
4461 4877 3.517500 TGTGGCTTTGGGGGATTTAAATC 59.482 43.478 18.22 18.22 34.66 2.17 R
5112 5555 2.689983 CCTGGTATGTCCATTTTCCTGC 59.310 50.000 0.00 0.00 46.12 4.85 R
5514 5963 0.238289 AAAAATGAGCAGCCGACACG 59.762 50.000 0.00 0.00 0.00 4.49 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 1.443407 ACTCATCGAGCAATCCGGG 59.557 57.895 0.00 0.00 32.04 5.73
19 20 1.958205 CTCATCGAGCAATCCGGGC 60.958 63.158 0.00 0.00 0.00 6.13
20 21 3.341043 CATCGAGCAATCCGGGCG 61.341 66.667 0.00 0.00 36.08 6.13
39 40 4.899239 GACGCGATGGGGGAGCTG 62.899 72.222 15.93 0.00 0.00 4.24
59 60 4.508128 GCGTCGCTCCGATCCCAA 62.508 66.667 10.68 0.00 38.42 4.12
60 61 2.417516 CGTCGCTCCGATCCCAAT 59.582 61.111 0.00 0.00 38.42 3.16
61 62 1.661821 CGTCGCTCCGATCCCAATC 60.662 63.158 0.00 0.00 38.42 2.67
71 72 1.597742 GATCCCAATCGACCATGGTG 58.402 55.000 25.52 14.83 34.79 4.17
72 73 0.466189 ATCCCAATCGACCATGGTGC 60.466 55.000 25.52 13.00 34.79 5.01
73 74 2.472059 CCCAATCGACCATGGTGCG 61.472 63.158 25.52 23.80 34.79 5.34
74 75 2.404789 CAATCGACCATGGTGCGC 59.595 61.111 25.52 7.11 0.00 6.09
75 76 2.046411 AATCGACCATGGTGCGCA 60.046 55.556 25.52 5.66 0.00 6.09
76 77 2.108514 AATCGACCATGGTGCGCAG 61.109 57.895 25.52 8.29 0.00 5.18
77 78 4.758251 TCGACCATGGTGCGCAGG 62.758 66.667 25.52 11.82 0.00 4.85
79 80 3.127533 GACCATGGTGCGCAGGTC 61.128 66.667 25.52 25.16 43.18 3.85
80 81 4.722700 ACCATGGTGCGCAGGTCC 62.723 66.667 18.99 9.97 0.00 4.46
103 104 4.796225 CGAGAGGAAGAAGGCGTC 57.204 61.111 0.00 0.00 0.00 5.19
104 105 1.226435 CGAGAGGAAGAAGGCGTCG 60.226 63.158 0.00 0.00 0.00 5.12
105 106 1.139947 GAGAGGAAGAAGGCGTCGG 59.860 63.158 0.00 0.00 0.00 4.79
106 107 2.184579 GAGGAAGAAGGCGTCGGG 59.815 66.667 0.00 0.00 0.00 5.14
107 108 3.372554 GAGGAAGAAGGCGTCGGGG 62.373 68.421 0.00 0.00 0.00 5.73
108 109 3.703127 GGAAGAAGGCGTCGGGGT 61.703 66.667 0.00 0.00 0.00 4.95
109 110 2.125633 GAAGAAGGCGTCGGGGTC 60.126 66.667 0.00 0.00 0.00 4.46
110 111 3.984200 GAAGAAGGCGTCGGGGTCG 62.984 68.421 0.00 0.00 37.82 4.79
112 113 4.790861 GAAGGCGTCGGGGTCGTC 62.791 72.222 0.00 0.00 37.69 4.20
122 123 4.790861 GGGTCGTCCGGTCGCTTC 62.791 72.222 16.54 8.85 33.83 3.86
123 124 3.745803 GGTCGTCCGGTCGCTTCT 61.746 66.667 16.54 0.00 0.00 2.85
124 125 2.202453 GTCGTCCGGTCGCTTCTC 60.202 66.667 16.54 1.03 0.00 2.87
125 126 3.796443 TCGTCCGGTCGCTTCTCG 61.796 66.667 16.54 3.04 40.15 4.04
184 185 4.016706 GGTAGGTGGCCGTGCAGT 62.017 66.667 0.00 0.00 0.00 4.40
185 186 2.742372 GTAGGTGGCCGTGCAGTG 60.742 66.667 0.00 0.00 0.00 3.66
186 187 4.015406 TAGGTGGCCGTGCAGTGG 62.015 66.667 0.00 0.36 0.00 4.00
205 206 4.086178 CGTCCGCTGACTCGTCGT 62.086 66.667 6.71 0.00 39.47 4.34
206 207 2.202324 GTCCGCTGACTCGTCGTC 60.202 66.667 0.37 1.54 43.14 4.20
214 215 3.261441 GACTCGTCGTCAACACCAA 57.739 52.632 0.00 0.00 42.37 3.67
215 216 0.850856 GACTCGTCGTCAACACCAAC 59.149 55.000 0.00 0.00 42.37 3.77
216 217 0.458669 ACTCGTCGTCAACACCAACT 59.541 50.000 0.00 0.00 0.00 3.16
217 218 1.677576 ACTCGTCGTCAACACCAACTA 59.322 47.619 0.00 0.00 0.00 2.24
218 219 2.287427 ACTCGTCGTCAACACCAACTAG 60.287 50.000 0.00 0.00 0.00 2.57
219 220 0.782384 CGTCGTCAACACCAACTAGC 59.218 55.000 0.00 0.00 0.00 3.42
220 221 1.145803 GTCGTCAACACCAACTAGCC 58.854 55.000 0.00 0.00 0.00 3.93
221 222 0.753867 TCGTCAACACCAACTAGCCA 59.246 50.000 0.00 0.00 0.00 4.75
222 223 1.139256 TCGTCAACACCAACTAGCCAA 59.861 47.619 0.00 0.00 0.00 4.52
223 224 1.263217 CGTCAACACCAACTAGCCAAC 59.737 52.381 0.00 0.00 0.00 3.77
224 225 1.607148 GTCAACACCAACTAGCCAACC 59.393 52.381 0.00 0.00 0.00 3.77
225 226 1.213182 TCAACACCAACTAGCCAACCA 59.787 47.619 0.00 0.00 0.00 3.67
226 227 1.336755 CAACACCAACTAGCCAACCAC 59.663 52.381 0.00 0.00 0.00 4.16
227 228 0.534203 ACACCAACTAGCCAACCACG 60.534 55.000 0.00 0.00 0.00 4.94
228 229 1.072505 ACCAACTAGCCAACCACGG 59.927 57.895 0.00 0.00 0.00 4.94
236 237 2.425592 CCAACCACGGCTGTCTCA 59.574 61.111 0.00 0.00 0.00 3.27
237 238 1.961277 CCAACCACGGCTGTCTCAC 60.961 63.158 0.00 0.00 0.00 3.51
238 239 2.029073 AACCACGGCTGTCTCACG 59.971 61.111 0.00 0.00 0.00 4.35
239 240 2.495409 AACCACGGCTGTCTCACGA 61.495 57.895 0.00 0.00 0.00 4.35
240 241 2.430921 CCACGGCTGTCTCACGAC 60.431 66.667 0.00 0.00 40.64 4.34
247 248 4.628160 TGTCTCACGACAAGCGAC 57.372 55.556 0.00 0.00 46.61 5.19
248 249 1.370051 TGTCTCACGACAAGCGACG 60.370 57.895 0.00 0.00 46.61 5.12
249 250 2.428569 TCTCACGACAAGCGACGC 60.429 61.111 13.03 13.03 44.57 5.19
250 251 2.429236 CTCACGACAAGCGACGCT 60.429 61.111 18.46 18.46 44.57 5.07
252 253 1.935065 CTCACGACAAGCGACGCTTC 61.935 60.000 31.10 20.41 46.77 3.86
253 254 2.733593 ACGACAAGCGACGCTTCC 60.734 61.111 31.10 23.00 46.77 3.46
254 255 3.827784 CGACAAGCGACGCTTCCG 61.828 66.667 31.10 29.11 46.77 4.30
255 256 4.135493 GACAAGCGACGCTTCCGC 62.135 66.667 31.10 18.90 46.77 5.54
273 274 2.980233 GCAGGCACAGCGAGGTTT 60.980 61.111 0.00 0.00 0.00 3.27
274 275 2.970974 GCAGGCACAGCGAGGTTTC 61.971 63.158 0.00 0.00 0.00 2.78
275 276 2.032681 AGGCACAGCGAGGTTTCC 59.967 61.111 0.00 0.00 0.00 3.13
276 277 3.056328 GGCACAGCGAGGTTTCCC 61.056 66.667 0.00 0.00 0.00 3.97
277 278 3.056328 GCACAGCGAGGTTTCCCC 61.056 66.667 0.00 0.00 0.00 4.81
279 280 1.672356 CACAGCGAGGTTTCCCCTG 60.672 63.158 0.00 0.00 46.51 4.45
280 281 2.147387 ACAGCGAGGTTTCCCCTGT 61.147 57.895 0.00 0.00 46.51 4.00
281 282 1.376037 CAGCGAGGTTTCCCCTGTC 60.376 63.158 0.00 0.00 46.51 3.51
282 283 2.434359 GCGAGGTTTCCCCTGTCG 60.434 66.667 0.00 0.00 46.51 4.35
283 284 2.434359 CGAGGTTTCCCCTGTCGC 60.434 66.667 0.00 0.00 46.51 5.19
284 285 2.747686 GAGGTTTCCCCTGTCGCA 59.252 61.111 0.00 0.00 46.51 5.10
285 286 1.671379 GAGGTTTCCCCTGTCGCAC 60.671 63.158 0.00 0.00 46.51 5.34
286 287 2.113243 GAGGTTTCCCCTGTCGCACT 62.113 60.000 0.00 0.00 46.51 4.40
287 288 1.228154 GGTTTCCCCTGTCGCACTT 60.228 57.895 0.00 0.00 0.00 3.16
288 289 0.822121 GGTTTCCCCTGTCGCACTTT 60.822 55.000 0.00 0.00 0.00 2.66
289 290 0.591659 GTTTCCCCTGTCGCACTTTC 59.408 55.000 0.00 0.00 0.00 2.62
290 291 0.536460 TTTCCCCTGTCGCACTTTCC 60.536 55.000 0.00 0.00 0.00 3.13
291 292 1.701031 TTCCCCTGTCGCACTTTCCA 61.701 55.000 0.00 0.00 0.00 3.53
292 293 1.228124 CCCCTGTCGCACTTTCCAA 60.228 57.895 0.00 0.00 0.00 3.53
293 294 0.609131 CCCCTGTCGCACTTTCCAAT 60.609 55.000 0.00 0.00 0.00 3.16
294 295 0.804989 CCCTGTCGCACTTTCCAATC 59.195 55.000 0.00 0.00 0.00 2.67
295 296 1.611673 CCCTGTCGCACTTTCCAATCT 60.612 52.381 0.00 0.00 0.00 2.40
296 297 1.466167 CCTGTCGCACTTTCCAATCTG 59.534 52.381 0.00 0.00 0.00 2.90
297 298 2.416747 CTGTCGCACTTTCCAATCTGA 58.583 47.619 0.00 0.00 0.00 3.27
298 299 2.807967 CTGTCGCACTTTCCAATCTGAA 59.192 45.455 0.00 0.00 0.00 3.02
299 300 3.411446 TGTCGCACTTTCCAATCTGAAT 58.589 40.909 0.00 0.00 0.00 2.57
300 301 3.436704 TGTCGCACTTTCCAATCTGAATC 59.563 43.478 0.00 0.00 0.00 2.52
301 302 3.686726 GTCGCACTTTCCAATCTGAATCT 59.313 43.478 0.00 0.00 0.00 2.40
302 303 3.686241 TCGCACTTTCCAATCTGAATCTG 59.314 43.478 0.00 0.00 0.00 2.90
303 304 3.686241 CGCACTTTCCAATCTGAATCTGA 59.314 43.478 0.00 0.00 0.00 3.27
304 305 4.154737 CGCACTTTCCAATCTGAATCTGAA 59.845 41.667 0.00 0.00 0.00 3.02
305 306 5.163683 CGCACTTTCCAATCTGAATCTGAAT 60.164 40.000 0.00 0.00 0.00 2.57
306 307 6.034591 GCACTTTCCAATCTGAATCTGAATG 58.965 40.000 0.00 0.00 0.00 2.67
307 308 6.034591 CACTTTCCAATCTGAATCTGAATGC 58.965 40.000 0.36 0.00 0.00 3.56
308 309 4.888038 TTCCAATCTGAATCTGAATGCG 57.112 40.909 0.36 0.00 0.00 4.73
309 310 2.615447 TCCAATCTGAATCTGAATGCGC 59.385 45.455 0.00 0.00 0.00 6.09
310 311 2.601504 CCAATCTGAATCTGAATGCGCG 60.602 50.000 0.00 0.00 0.00 6.86
311 312 1.945387 ATCTGAATCTGAATGCGCGT 58.055 45.000 8.43 0.00 0.00 6.01
312 313 1.001624 TCTGAATCTGAATGCGCGTG 58.998 50.000 8.43 0.00 0.00 5.34
313 314 0.723414 CTGAATCTGAATGCGCGTGT 59.277 50.000 8.43 0.00 0.00 4.49
314 315 1.926510 CTGAATCTGAATGCGCGTGTA 59.073 47.619 8.43 0.00 0.00 2.90
315 316 1.926510 TGAATCTGAATGCGCGTGTAG 59.073 47.619 8.43 4.85 0.00 2.74
316 317 0.652592 AATCTGAATGCGCGTGTAGC 59.347 50.000 8.43 0.00 43.95 3.58
327 328 3.507597 CGTGTAGCAACTGTAGCCA 57.492 52.632 0.00 0.00 0.00 4.75
328 329 2.010145 CGTGTAGCAACTGTAGCCAT 57.990 50.000 0.00 0.00 0.00 4.40
329 330 1.660607 CGTGTAGCAACTGTAGCCATG 59.339 52.381 0.00 0.00 0.00 3.66
330 331 2.699954 GTGTAGCAACTGTAGCCATGT 58.300 47.619 0.00 0.00 0.00 3.21
331 332 2.416547 GTGTAGCAACTGTAGCCATGTG 59.583 50.000 0.00 0.00 0.00 3.21
332 333 2.038426 TGTAGCAACTGTAGCCATGTGT 59.962 45.455 0.00 0.00 0.00 3.72
333 334 1.813513 AGCAACTGTAGCCATGTGTC 58.186 50.000 0.00 0.00 0.00 3.67
334 335 1.072173 AGCAACTGTAGCCATGTGTCA 59.928 47.619 0.00 0.00 0.00 3.58
335 336 1.466167 GCAACTGTAGCCATGTGTCAG 59.534 52.381 0.00 0.00 0.00 3.51
336 337 2.079158 CAACTGTAGCCATGTGTCAGG 58.921 52.381 0.00 0.00 0.00 3.86
337 338 1.352083 ACTGTAGCCATGTGTCAGGT 58.648 50.000 0.00 0.00 0.00 4.00
338 339 1.276421 ACTGTAGCCATGTGTCAGGTC 59.724 52.381 0.00 0.00 0.00 3.85
339 340 1.552337 CTGTAGCCATGTGTCAGGTCT 59.448 52.381 0.00 0.00 0.00 3.85
340 341 1.276138 TGTAGCCATGTGTCAGGTCTG 59.724 52.381 0.00 0.00 0.00 3.51
341 342 0.250234 TAGCCATGTGTCAGGTCTGC 59.750 55.000 0.00 0.00 0.00 4.26
342 343 1.002868 GCCATGTGTCAGGTCTGCT 60.003 57.895 0.00 0.00 0.00 4.24
343 344 1.303799 GCCATGTGTCAGGTCTGCTG 61.304 60.000 0.00 0.00 0.00 4.41
344 345 1.303799 CCATGTGTCAGGTCTGCTGC 61.304 60.000 0.00 0.00 0.00 5.25
345 346 1.002868 ATGTGTCAGGTCTGCTGCC 60.003 57.895 0.00 0.00 0.00 4.85
346 347 1.486997 ATGTGTCAGGTCTGCTGCCT 61.487 55.000 0.00 1.64 36.66 4.75
347 348 1.375268 GTGTCAGGTCTGCTGCCTC 60.375 63.158 0.00 0.00 33.31 4.70
348 349 2.267324 GTCAGGTCTGCTGCCTCC 59.733 66.667 0.00 0.00 33.31 4.30
349 350 3.005539 TCAGGTCTGCTGCCTCCC 61.006 66.667 0.00 0.00 33.31 4.30
350 351 4.106925 CAGGTCTGCTGCCTCCCC 62.107 72.222 0.00 0.00 33.31 4.81
351 352 4.345286 AGGTCTGCTGCCTCCCCT 62.345 66.667 0.00 0.00 0.00 4.79
352 353 4.106925 GGTCTGCTGCCTCCCCTG 62.107 72.222 0.00 0.00 0.00 4.45
353 354 4.106925 GTCTGCTGCCTCCCCTGG 62.107 72.222 0.00 0.00 0.00 4.45
354 355 4.664267 TCTGCTGCCTCCCCTGGT 62.664 66.667 0.00 0.00 0.00 4.00
355 356 4.421515 CTGCTGCCTCCCCTGGTG 62.422 72.222 0.00 0.00 0.00 4.17
357 358 3.009115 GCTGCCTCCCCTGGTGTA 61.009 66.667 0.00 0.00 0.00 2.90
358 359 2.602676 GCTGCCTCCCCTGGTGTAA 61.603 63.158 0.00 0.00 0.00 2.41
359 360 2.074967 CTGCCTCCCCTGGTGTAAA 58.925 57.895 0.00 0.00 0.00 2.01
360 361 0.322546 CTGCCTCCCCTGGTGTAAAC 60.323 60.000 0.00 0.00 0.00 2.01
361 362 1.376812 GCCTCCCCTGGTGTAAACG 60.377 63.158 0.00 0.00 0.00 3.60
362 363 1.833787 GCCTCCCCTGGTGTAAACGA 61.834 60.000 0.00 0.00 0.00 3.85
363 364 0.249398 CCTCCCCTGGTGTAAACGAG 59.751 60.000 0.00 0.00 0.00 4.18
364 365 0.391263 CTCCCCTGGTGTAAACGAGC 60.391 60.000 0.00 0.00 0.00 5.03
367 368 0.320374 CCCTGGTGTAAACGAGCTCA 59.680 55.000 15.40 0.00 0.00 4.26
379 380 7.425595 GTGTAAACGAGCTCAAAGTTTATATGC 59.574 37.037 20.95 12.71 40.81 3.14
380 381 6.743575 AAACGAGCTCAAAGTTTATATGCT 57.256 33.333 15.40 0.00 36.46 3.79
388 389 6.441093 TCAAAGTTTATATGCTTGCAGAGG 57.559 37.500 0.87 0.00 0.00 3.69
408 409 5.481473 AGAGGCAATTTCAAGCAGGAATTTA 59.519 36.000 0.00 0.00 0.00 1.40
420 421 7.981225 TCAAGCAGGAATTTAAATGGCTTATTC 59.019 33.333 20.07 7.68 37.97 1.75
421 422 7.422465 AGCAGGAATTTAAATGGCTTATTCA 57.578 32.000 0.39 0.00 0.00 2.57
422 423 7.267857 AGCAGGAATTTAAATGGCTTATTCAC 58.732 34.615 0.39 0.00 0.00 3.18
423 424 7.041107 GCAGGAATTTAAATGGCTTATTCACA 58.959 34.615 0.39 0.00 0.00 3.58
426 427 8.761689 AGGAATTTAAATGGCTTATTCACACAT 58.238 29.630 0.39 0.00 0.00 3.21
450 451 9.092876 CATCTAAGAGGAACAAATACTCTTCAC 57.907 37.037 6.22 0.00 45.65 3.18
454 455 7.067496 AGAGGAACAAATACTCTTCACTTGA 57.933 36.000 0.00 0.00 38.36 3.02
488 501 7.116519 CGTTGATAATAGTCTAGCTTTTAGCCC 59.883 40.741 0.00 2.67 43.77 5.19
517 530 2.569404 AGCCTCCTTCAGTCAACCTTAG 59.431 50.000 0.00 0.00 0.00 2.18
519 532 2.569404 CCTCCTTCAGTCAACCTTAGCT 59.431 50.000 0.00 0.00 0.00 3.32
520 533 3.594134 CTCCTTCAGTCAACCTTAGCTG 58.406 50.000 0.00 0.00 0.00 4.24
530 545 2.497675 CAACCTTAGCTGCCTCAGTCTA 59.502 50.000 0.00 0.00 33.43 2.59
700 757 2.574369 TCCCCAATGTGGATTCGTAGTT 59.426 45.455 0.00 0.00 40.96 2.24
740 797 2.097036 TGCATCATCCTTGAAGGCTTG 58.903 47.619 3.46 6.99 37.23 4.01
798 855 1.066787 GTCTAGGTCCTTGCTGTCCAC 60.067 57.143 0.00 0.00 0.00 4.02
799 856 0.976641 CTAGGTCCTTGCTGTCCACA 59.023 55.000 0.00 0.00 0.00 4.17
801 858 1.600916 GGTCCTTGCTGTCCACACC 60.601 63.158 0.00 0.00 0.00 4.16
802 859 1.961277 GTCCTTGCTGTCCACACCG 60.961 63.158 0.00 0.00 0.00 4.94
803 860 2.137528 TCCTTGCTGTCCACACCGA 61.138 57.895 0.00 0.00 0.00 4.69
805 862 0.817634 CCTTGCTGTCCACACCGAAA 60.818 55.000 0.00 0.00 0.00 3.46
806 863 0.307760 CTTGCTGTCCACACCGAAAC 59.692 55.000 0.00 0.00 0.00 2.78
807 864 0.393132 TTGCTGTCCACACCGAAACA 60.393 50.000 0.00 0.00 0.00 2.83
808 865 0.179032 TGCTGTCCACACCGAAACAT 60.179 50.000 0.00 0.00 0.00 2.71
810 867 1.877637 CTGTCCACACCGAAACATCA 58.122 50.000 0.00 0.00 0.00 3.07
812 869 1.140052 TGTCCACACCGAAACATCAGT 59.860 47.619 0.00 0.00 0.00 3.41
813 870 1.531149 GTCCACACCGAAACATCAGTG 59.469 52.381 0.00 0.00 36.30 3.66
814 871 1.140052 TCCACACCGAAACATCAGTGT 59.860 47.619 0.00 0.00 43.99 3.55
853 949 9.196552 AGCAGAGTTTAGCATTTTGATAAAAAC 57.803 29.630 0.04 0.00 39.52 2.43
1077 1176 6.569035 GCAAATCTGATGATCAACTGACACAA 60.569 38.462 13.51 0.00 31.51 3.33
1353 1452 0.653323 CAAAGAACAACGTCACGGCG 60.653 55.000 4.80 4.80 37.94 6.46
1596 1698 1.471119 CAGACTTGGGCATGCAGATT 58.529 50.000 21.36 0.00 0.00 2.40
1744 1846 7.069578 GGGACAGGTTCTATCTAATGTACTCAA 59.930 40.741 0.00 0.00 0.00 3.02
1800 1902 1.815421 CTACACCGGCACCATGAGC 60.815 63.158 0.00 0.00 0.00 4.26
1881 1983 1.344763 GGTTATGGCGTCTATGGCTCT 59.655 52.381 0.00 0.00 35.06 4.09
1976 2078 4.406972 TGATCCAATGAATTCCTCGAGAGT 59.593 41.667 15.71 0.00 0.00 3.24
2302 2404 4.634443 ACATTACTGTTTCGGACCAATAGC 59.366 41.667 0.00 0.00 28.70 2.97
2367 2469 6.324770 TGAATCATCCAGCAGAGATAAGTACA 59.675 38.462 0.00 0.00 0.00 2.90
2368 2470 6.737720 ATCATCCAGCAGAGATAAGTACAA 57.262 37.500 0.00 0.00 0.00 2.41
2369 2471 6.544928 TCATCCAGCAGAGATAAGTACAAA 57.455 37.500 0.00 0.00 0.00 2.83
2370 2472 6.577103 TCATCCAGCAGAGATAAGTACAAAG 58.423 40.000 0.00 0.00 0.00 2.77
2371 2473 6.381133 TCATCCAGCAGAGATAAGTACAAAGA 59.619 38.462 0.00 0.00 0.00 2.52
2373 2475 5.480422 TCCAGCAGAGATAAGTACAAAGACA 59.520 40.000 0.00 0.00 0.00 3.41
2374 2476 5.578727 CCAGCAGAGATAAGTACAAAGACAC 59.421 44.000 0.00 0.00 0.00 3.67
2375 2477 6.159293 CAGCAGAGATAAGTACAAAGACACA 58.841 40.000 0.00 0.00 0.00 3.72
2377 2479 6.870965 AGCAGAGATAAGTACAAAGACACAAG 59.129 38.462 0.00 0.00 0.00 3.16
2378 2480 6.091441 GCAGAGATAAGTACAAAGACACAAGG 59.909 42.308 0.00 0.00 0.00 3.61
2381 2483 6.702329 AGATAAGTACAAAGACACAAGGGAG 58.298 40.000 0.00 0.00 0.00 4.30
2382 2484 3.771577 AGTACAAAGACACAAGGGAGG 57.228 47.619 0.00 0.00 0.00 4.30
2385 2487 2.654863 ACAAAGACACAAGGGAGGTTG 58.345 47.619 0.00 0.00 0.00 3.77
2386 2488 2.025321 ACAAAGACACAAGGGAGGTTGT 60.025 45.455 0.00 0.00 41.47 3.32
2393 2495 1.774217 AAGGGAGGTTGTGCTGGGA 60.774 57.895 0.00 0.00 0.00 4.37
2394 2496 1.783250 AAGGGAGGTTGTGCTGGGAG 61.783 60.000 0.00 0.00 0.00 4.30
2395 2497 2.224159 GGGAGGTTGTGCTGGGAGA 61.224 63.158 0.00 0.00 0.00 3.71
2396 2498 1.003233 GGAGGTTGTGCTGGGAGAC 60.003 63.158 0.00 0.00 0.00 3.36
2397 2499 1.754745 GAGGTTGTGCTGGGAGACA 59.245 57.895 0.00 0.00 0.00 3.41
2409 2511 3.690460 CTGGGAGACAGGTTTATGCTTT 58.310 45.455 0.00 0.00 43.70 3.51
2410 2512 4.843728 CTGGGAGACAGGTTTATGCTTTA 58.156 43.478 0.00 0.00 43.70 1.85
2411 2513 4.843728 TGGGAGACAGGTTTATGCTTTAG 58.156 43.478 0.00 0.00 0.00 1.85
2412 2514 4.534500 TGGGAGACAGGTTTATGCTTTAGA 59.466 41.667 0.00 0.00 0.00 2.10
2413 2515 4.876679 GGGAGACAGGTTTATGCTTTAGAC 59.123 45.833 0.00 0.00 0.00 2.59
2415 2517 6.127140 GGGAGACAGGTTTATGCTTTAGACTA 60.127 42.308 0.00 0.00 0.00 2.59
2417 2519 7.988028 GGAGACAGGTTTATGCTTTAGACTATT 59.012 37.037 0.00 0.00 0.00 1.73
2418 2520 8.723942 AGACAGGTTTATGCTTTAGACTATTG 57.276 34.615 0.00 0.00 0.00 1.90
2420 2522 8.863872 ACAGGTTTATGCTTTAGACTATTGTT 57.136 30.769 0.00 0.00 0.00 2.83
2421 2523 8.730680 ACAGGTTTATGCTTTAGACTATTGTTG 58.269 33.333 0.00 0.00 0.00 3.33
2422 2524 7.698130 CAGGTTTATGCTTTAGACTATTGTTGC 59.302 37.037 0.00 0.00 0.00 4.17
2423 2525 6.687105 GGTTTATGCTTTAGACTATTGTTGCG 59.313 38.462 0.00 0.00 0.00 4.85
2424 2526 3.740044 TGCTTTAGACTATTGTTGCGC 57.260 42.857 0.00 0.00 0.00 6.09
2425 2527 2.418628 TGCTTTAGACTATTGTTGCGCC 59.581 45.455 4.18 0.00 0.00 6.53
2426 2528 2.536928 GCTTTAGACTATTGTTGCGCCG 60.537 50.000 4.18 0.00 0.00 6.46
2427 2529 2.373540 TTAGACTATTGTTGCGCCGT 57.626 45.000 4.18 0.00 0.00 5.68
2428 2530 1.917273 TAGACTATTGTTGCGCCGTC 58.083 50.000 4.18 0.08 0.00 4.79
2429 2531 0.246635 AGACTATTGTTGCGCCGTCT 59.753 50.000 4.18 2.55 0.00 4.18
2430 2532 0.370273 GACTATTGTTGCGCCGTCTG 59.630 55.000 4.18 0.00 0.00 3.51
2431 2533 1.019278 ACTATTGTTGCGCCGTCTGG 61.019 55.000 4.18 0.00 38.77 3.86
2433 2535 0.739462 TATTGTTGCGCCGTCTGGAG 60.739 55.000 4.18 0.00 37.49 3.86
2434 2536 2.449031 ATTGTTGCGCCGTCTGGAGA 62.449 55.000 4.18 0.00 37.19 3.71
2435 2537 2.357034 GTTGCGCCGTCTGGAGAA 60.357 61.111 4.18 0.00 37.19 2.87
2436 2538 2.048222 TTGCGCCGTCTGGAGAAG 60.048 61.111 4.18 0.00 37.19 2.85
2437 2539 2.570284 TTGCGCCGTCTGGAGAAGA 61.570 57.895 4.18 0.00 37.19 2.87
2438 2540 2.202676 GCGCCGTCTGGAGAAGAG 60.203 66.667 0.00 0.00 37.19 2.85
2439 2541 2.701780 GCGCCGTCTGGAGAAGAGA 61.702 63.158 0.00 0.00 37.19 3.10
2440 2542 2.010582 GCGCCGTCTGGAGAAGAGAT 62.011 60.000 0.00 0.00 37.19 2.75
2441 2543 0.457851 CGCCGTCTGGAGAAGAGATT 59.542 55.000 0.00 0.00 37.19 2.40
2442 2544 1.134965 CGCCGTCTGGAGAAGAGATTT 60.135 52.381 0.00 0.00 37.19 2.17
2443 2545 2.545731 GCCGTCTGGAGAAGAGATTTC 58.454 52.381 0.00 0.00 34.84 2.17
2448 2708 5.233988 CGTCTGGAGAAGAGATTTCAAACT 58.766 41.667 0.00 0.00 34.84 2.66
2476 2736 8.483758 GGAAATTTTAGACATAGGACTGTAGGA 58.516 37.037 0.00 0.00 0.00 2.94
2497 2757 3.288964 AGAACATACTACTCGTCCCTGG 58.711 50.000 0.00 0.00 0.00 4.45
2523 2783 5.063880 CCACTACATAATTAGCCAGTTCCC 58.936 45.833 0.00 0.00 0.00 3.97
2531 2791 2.270352 TAGCCAGTTCCCTTTGTGTG 57.730 50.000 0.00 0.00 0.00 3.82
2538 2798 4.389374 CAGTTCCCTTTGTGTGTGTAGAT 58.611 43.478 0.00 0.00 0.00 1.98
2551 2811 5.700832 GTGTGTGTAGATTCAGGAAATGACA 59.299 40.000 0.00 0.00 37.77 3.58
2630 2901 4.965119 ACAGGGAAATTGCGAGTATTTC 57.035 40.909 0.00 0.00 39.92 2.17
2712 2983 7.792032 TGAAATTGAGAATACCTAGGTACAGG 58.208 38.462 24.07 0.00 41.87 4.00
2716 2987 5.845734 TGAGAATACCTAGGTACAGGGAAA 58.154 41.667 24.07 0.95 40.29 3.13
2717 2988 5.659971 TGAGAATACCTAGGTACAGGGAAAC 59.340 44.000 24.07 10.35 40.29 2.78
2718 2989 5.851418 AGAATACCTAGGTACAGGGAAACT 58.149 41.667 24.07 10.86 40.29 2.66
2733 3004 7.581011 CAGGGAAACTGCAAATATTTTGTAC 57.419 36.000 0.00 0.00 40.97 2.90
2734 3005 7.378181 CAGGGAAACTGCAAATATTTTGTACT 58.622 34.615 0.00 0.00 40.97 2.73
2735 3006 8.519526 CAGGGAAACTGCAAATATTTTGTACTA 58.480 33.333 0.00 0.00 40.97 1.82
2736 3007 8.520351 AGGGAAACTGCAAATATTTTGTACTAC 58.480 33.333 0.00 0.00 0.00 2.73
2739 3010 8.742554 AAACTGCAAATATTTTGTACTACTGC 57.257 30.769 0.00 0.00 0.00 4.40
2740 3011 7.447374 ACTGCAAATATTTTGTACTACTGCA 57.553 32.000 0.00 1.94 36.03 4.41
2742 3013 6.616947 TGCAAATATTTTGTACTACTGCACC 58.383 36.000 0.00 0.00 32.69 5.01
2743 3014 6.033966 GCAAATATTTTGTACTACTGCACCC 58.966 40.000 0.00 0.00 0.00 4.61
2818 3093 4.082787 ACTTGATGCGGTAAATTCTGTTGG 60.083 41.667 0.00 0.00 0.00 3.77
2838 3114 4.009675 TGGGATACATTTCAGCAGTTCAC 58.990 43.478 0.00 0.00 39.74 3.18
2978 3254 4.579869 TCCTTCATACCAAGCTGTTCTTC 58.420 43.478 0.00 0.00 31.27 2.87
2981 3257 5.241506 CCTTCATACCAAGCTGTTCTTCAAA 59.758 40.000 0.00 0.00 31.27 2.69
3038 3317 2.745821 GGTACGGCGAAAGAAGGAAATT 59.254 45.455 16.62 0.00 0.00 1.82
3047 3326 7.024171 GGCGAAAGAAGGAAATTAAGAAGAAG 58.976 38.462 0.00 0.00 0.00 2.85
3080 3359 5.163703 ACGATACTTGAGTGCTTCTAGTGAG 60.164 44.000 13.11 8.43 41.13 3.51
3202 3481 5.831702 TTCGGCAAAGTTTACAAGGTAAA 57.168 34.783 0.00 0.00 0.00 2.01
3263 3542 1.808945 CTGCCAGAATTGTGGTCTGAC 59.191 52.381 21.71 6.39 44.44 3.51
3277 3556 7.667043 TGTGGTCTGACTTTGTAAATATGTC 57.333 36.000 7.85 0.00 0.00 3.06
3388 3668 5.360591 ACACAGTAGTTTCAGTGGAGAAAG 58.639 41.667 0.00 0.00 38.11 2.62
3403 3804 5.067283 GTGGAGAAAGAAAGTTGTGGCTTTA 59.933 40.000 0.00 0.00 38.64 1.85
4085 4497 6.299805 TGAGCAGTGTCTAGGATATTGTTT 57.700 37.500 0.00 0.00 0.00 2.83
4098 4510 9.495572 CTAGGATATTGTTTCAATCTTAGGGAC 57.504 37.037 0.00 0.00 30.00 4.46
4122 4534 2.905415 TCAAGTTGGCAGGGATGAAT 57.095 45.000 2.34 0.00 0.00 2.57
4210 4623 5.024555 GTGAAATGCTTCGATGAGTTTAGC 58.975 41.667 1.89 0.00 33.94 3.09
4224 4637 7.280205 CGATGAGTTTAGCTGGGTACTATTTTT 59.720 37.037 0.00 0.00 0.00 1.94
4272 4687 3.636764 AGGCTGTTGTTAAAAAGTGAGGG 59.363 43.478 0.00 0.00 0.00 4.30
4424 4840 8.500753 TTAGTTAAGAGCACTTTCACTTTTGA 57.499 30.769 11.80 0.00 37.53 2.69
4426 4842 8.000780 AGTTAAGAGCACTTTCACTTTTGAAT 57.999 30.769 0.55 0.00 41.50 2.57
4461 4877 2.686235 TCTTTGCAATTGCCAATTCCG 58.314 42.857 26.94 10.83 41.18 4.30
4591 5015 9.243105 ACTATTTAATATTGTGACCAAACTGCT 57.757 29.630 0.00 0.00 33.44 4.24
5311 5754 8.526147 GTGGTAGTAACCTCTGTTAGTTTATCA 58.474 37.037 0.00 0.00 46.91 2.15
5403 5847 7.976734 AGGTTTATATTGTTTCTCGTCTCAGAG 59.023 37.037 0.00 0.00 39.52 3.35
5419 5863 6.103330 GTCTCAGAGAAGGTGTTTCTATTCC 58.897 44.000 0.20 0.00 46.12 3.01
5422 5866 5.105716 TCAGAGAAGGTGTTTCTATTCCGAG 60.106 44.000 0.00 0.00 46.12 4.63
5449 5894 7.829725 TGCTTGTGTTTATCTTCATTTGCTAT 58.170 30.769 0.00 0.00 0.00 2.97
5473 5922 7.514784 TGAATAAGGTTTCCATCATAGCATG 57.485 36.000 0.00 0.00 0.00 4.06
5475 5924 7.560991 TGAATAAGGTTTCCATCATAGCATGTT 59.439 33.333 0.00 0.00 0.00 2.71
5505 5954 5.749032 GCCCTGCATTATATCTTTACCCTGT 60.749 44.000 0.00 0.00 0.00 4.00
5514 5963 3.350219 TCTTTACCCTGTGATTGCTCC 57.650 47.619 0.00 0.00 0.00 4.70
5520 5969 1.354337 CCTGTGATTGCTCCGTGTCG 61.354 60.000 0.00 0.00 0.00 4.35
5556 6011 4.855340 TCCCCTCACAATAAAGGCTAAAG 58.145 43.478 0.00 0.00 0.00 1.85
5604 6067 3.824133 CCATCATTAACAGGATGCTCCA 58.176 45.455 7.68 0.00 42.53 3.86
5614 6077 2.954318 CAGGATGCTCCACCCTTATTTG 59.046 50.000 5.21 0.00 39.61 2.32
5673 6137 4.564041 ACAAATTTCGCCATGTGCATTAA 58.436 34.783 0.00 0.00 41.33 1.40
5833 6701 8.740123 TTATGTAAACTGTCTCCACTTTGAAA 57.260 30.769 0.00 0.00 0.00 2.69
5969 6850 1.996786 CTGCAGCCCGCTTGGTATTG 61.997 60.000 0.00 0.00 43.06 1.90
6016 6902 0.380733 GCAAGTAGCGGCCATTTACC 59.619 55.000 2.24 0.00 0.00 2.85
6017 6903 1.745232 CAAGTAGCGGCCATTTACCA 58.255 50.000 2.24 0.00 0.00 3.25
6018 6904 1.400494 CAAGTAGCGGCCATTTACCAC 59.600 52.381 2.24 0.00 0.00 4.16
6019 6905 0.909623 AGTAGCGGCCATTTACCACT 59.090 50.000 2.24 0.00 0.00 4.00
6021 6907 0.906066 TAGCGGCCATTTACCACTGA 59.094 50.000 2.24 0.00 0.00 3.41
6022 6908 0.037590 AGCGGCCATTTACCACTGAA 59.962 50.000 2.24 0.00 0.00 3.02
6023 6909 0.885196 GCGGCCATTTACCACTGAAA 59.115 50.000 2.24 0.00 0.00 2.69
6024 6910 1.271102 GCGGCCATTTACCACTGAAAA 59.729 47.619 2.24 0.00 0.00 2.29
6025 6911 2.288518 GCGGCCATTTACCACTGAAAAA 60.289 45.455 2.24 0.00 0.00 1.94
6047 6933 3.920093 AAACTAGCCGCAGTGCCCC 62.920 63.158 10.11 0.00 0.00 5.80
6162 7049 2.041928 CTCCCCTGCTTCCCCTCT 59.958 66.667 0.00 0.00 0.00 3.69
6164 7051 2.285668 CCCCTGCTTCCCCTCTCA 60.286 66.667 0.00 0.00 0.00 3.27
6174 7061 2.507944 CCCTCTCATTCCAGGCGG 59.492 66.667 0.00 0.00 0.00 6.13
6179 7066 2.124193 TCATTCCAGGCGGCCATG 60.124 61.111 23.09 15.71 0.00 3.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.443407 CCCGGATTGCTCGATGAGT 59.557 57.895 0.73 0.00 31.39 3.41
1 2 1.958205 GCCCGGATTGCTCGATGAG 60.958 63.158 0.73 0.00 0.00 2.90
2 3 2.108976 GCCCGGATTGCTCGATGA 59.891 61.111 0.73 0.00 0.00 2.92
3 4 3.341043 CGCCCGGATTGCTCGATG 61.341 66.667 0.73 0.00 0.00 3.84
22 23 4.899239 CAGCTCCCCCATCGCGTC 62.899 72.222 5.77 0.00 0.00 5.19
42 43 3.792053 ATTGGGATCGGAGCGACGC 62.792 63.158 13.03 13.03 39.18 5.19
43 44 1.661821 GATTGGGATCGGAGCGACG 60.662 63.158 0.00 0.00 39.18 5.12
44 45 4.345337 GATTGGGATCGGAGCGAC 57.655 61.111 0.00 0.00 39.18 5.19
52 53 1.597742 CACCATGGTCGATTGGGATC 58.402 55.000 16.53 0.00 37.32 3.36
53 54 0.466189 GCACCATGGTCGATTGGGAT 60.466 55.000 16.53 0.00 37.32 3.85
54 55 1.077787 GCACCATGGTCGATTGGGA 60.078 57.895 16.53 0.00 37.32 4.37
55 56 2.472059 CGCACCATGGTCGATTGGG 61.472 63.158 23.87 14.31 37.32 4.12
56 57 3.101209 CGCACCATGGTCGATTGG 58.899 61.111 23.87 11.16 39.02 3.16
57 58 2.313717 CTGCGCACCATGGTCGATTG 62.314 60.000 29.10 15.59 0.00 2.67
58 59 2.046411 TGCGCACCATGGTCGATT 60.046 55.556 29.10 3.66 0.00 3.34
59 60 2.512286 CTGCGCACCATGGTCGAT 60.512 61.111 29.10 4.02 0.00 3.59
60 61 4.758251 CCTGCGCACCATGGTCGA 62.758 66.667 29.10 17.80 0.00 4.20
62 63 3.127533 GACCTGCGCACCATGGTC 61.128 66.667 25.16 25.16 41.52 4.02
63 64 4.722700 GGACCTGCGCACCATGGT 62.723 66.667 18.01 18.01 35.23 3.55
74 75 4.135153 CTCTCGGTGCCGGACCTG 62.135 72.222 5.05 7.06 43.55 4.00
77 78 3.358076 CTTCCTCTCGGTGCCGGAC 62.358 68.421 5.05 0.00 40.25 4.79
78 79 3.068691 CTTCCTCTCGGTGCCGGA 61.069 66.667 5.05 6.25 40.25 5.14
79 80 2.564553 CTTCTTCCTCTCGGTGCCGG 62.565 65.000 10.94 0.00 40.25 6.13
80 81 1.153745 CTTCTTCCTCTCGGTGCCG 60.154 63.158 3.94 3.94 41.35 5.69
81 82 1.219393 CCTTCTTCCTCTCGGTGCC 59.781 63.158 0.00 0.00 0.00 5.01
82 83 1.448717 GCCTTCTTCCTCTCGGTGC 60.449 63.158 0.00 0.00 0.00 5.01
83 84 1.153745 CGCCTTCTTCCTCTCGGTG 60.154 63.158 0.00 0.00 0.00 4.94
84 85 1.596895 GACGCCTTCTTCCTCTCGGT 61.597 60.000 0.00 0.00 0.00 4.69
85 86 1.139947 GACGCCTTCTTCCTCTCGG 59.860 63.158 0.00 0.00 0.00 4.63
86 87 1.226435 CGACGCCTTCTTCCTCTCG 60.226 63.158 0.00 0.00 0.00 4.04
87 88 1.139947 CCGACGCCTTCTTCCTCTC 59.860 63.158 0.00 0.00 0.00 3.20
88 89 2.352032 CCCGACGCCTTCTTCCTCT 61.352 63.158 0.00 0.00 0.00 3.69
89 90 2.184579 CCCGACGCCTTCTTCCTC 59.815 66.667 0.00 0.00 0.00 3.71
90 91 3.391382 CCCCGACGCCTTCTTCCT 61.391 66.667 0.00 0.00 0.00 3.36
91 92 3.660732 GACCCCGACGCCTTCTTCC 62.661 68.421 0.00 0.00 0.00 3.46
92 93 2.125633 GACCCCGACGCCTTCTTC 60.126 66.667 0.00 0.00 0.00 2.87
93 94 4.065281 CGACCCCGACGCCTTCTT 62.065 66.667 0.00 0.00 38.22 2.52
95 96 4.790861 GACGACCCCGACGCCTTC 62.791 72.222 0.00 0.00 39.50 3.46
105 106 4.790861 GAAGCGACCGGACGACCC 62.791 72.222 29.83 12.18 35.09 4.46
106 107 3.680338 GAGAAGCGACCGGACGACC 62.680 68.421 29.83 16.16 35.09 4.79
107 108 2.202453 GAGAAGCGACCGGACGAC 60.202 66.667 29.83 19.55 35.09 4.34
108 109 3.796443 CGAGAAGCGACCGGACGA 61.796 66.667 29.83 0.00 44.57 4.20
167 168 4.016706 ACTGCACGGCCACCTACC 62.017 66.667 2.24 0.00 0.00 3.18
168 169 2.742372 CACTGCACGGCCACCTAC 60.742 66.667 2.24 0.00 0.00 3.18
169 170 4.015406 CCACTGCACGGCCACCTA 62.015 66.667 2.24 0.00 0.00 3.08
197 198 0.458669 AGTTGGTGTTGACGACGAGT 59.541 50.000 0.00 0.00 0.00 4.18
198 199 2.316792 CTAGTTGGTGTTGACGACGAG 58.683 52.381 0.00 0.00 0.00 4.18
199 200 1.601162 GCTAGTTGGTGTTGACGACGA 60.601 52.381 0.00 0.00 0.00 4.20
200 201 0.782384 GCTAGTTGGTGTTGACGACG 59.218 55.000 0.00 0.00 0.00 5.12
201 202 1.145803 GGCTAGTTGGTGTTGACGAC 58.854 55.000 0.00 0.00 0.00 4.34
202 203 0.753867 TGGCTAGTTGGTGTTGACGA 59.246 50.000 0.00 0.00 0.00 4.20
203 204 1.263217 GTTGGCTAGTTGGTGTTGACG 59.737 52.381 0.00 0.00 0.00 4.35
204 205 1.607148 GGTTGGCTAGTTGGTGTTGAC 59.393 52.381 0.00 0.00 0.00 3.18
205 206 1.213182 TGGTTGGCTAGTTGGTGTTGA 59.787 47.619 0.00 0.00 0.00 3.18
206 207 1.336755 GTGGTTGGCTAGTTGGTGTTG 59.663 52.381 0.00 0.00 0.00 3.33
207 208 1.687563 GTGGTTGGCTAGTTGGTGTT 58.312 50.000 0.00 0.00 0.00 3.32
208 209 0.534203 CGTGGTTGGCTAGTTGGTGT 60.534 55.000 0.00 0.00 0.00 4.16
209 210 1.234615 CCGTGGTTGGCTAGTTGGTG 61.235 60.000 0.00 0.00 0.00 4.17
210 211 1.072505 CCGTGGTTGGCTAGTTGGT 59.927 57.895 0.00 0.00 0.00 3.67
211 212 3.981308 CCGTGGTTGGCTAGTTGG 58.019 61.111 0.00 0.00 0.00 3.77
219 220 1.961277 GTGAGACAGCCGTGGTTGG 60.961 63.158 7.67 0.00 0.00 3.77
220 221 2.310233 CGTGAGACAGCCGTGGTTG 61.310 63.158 0.76 0.76 0.00 3.77
221 222 2.029073 CGTGAGACAGCCGTGGTT 59.971 61.111 0.00 0.00 0.00 3.67
222 223 2.910479 TCGTGAGACAGCCGTGGT 60.910 61.111 0.00 0.00 33.31 4.16
232 233 2.428569 GCGTCGCTTGTCGTGAGA 60.429 61.111 10.68 0.00 39.67 3.27
233 234 2.429236 AGCGTCGCTTGTCGTGAG 60.429 61.111 15.47 0.00 33.89 3.51
256 257 2.970974 GAAACCTCGCTGTGCCTGC 61.971 63.158 0.00 0.00 0.00 4.85
257 258 2.328099 GGAAACCTCGCTGTGCCTG 61.328 63.158 0.00 0.00 0.00 4.85
258 259 2.032681 GGAAACCTCGCTGTGCCT 59.967 61.111 0.00 0.00 0.00 4.75
270 271 0.591659 GAAAGTGCGACAGGGGAAAC 59.408 55.000 0.00 0.00 0.00 2.78
271 272 0.536460 GGAAAGTGCGACAGGGGAAA 60.536 55.000 0.00 0.00 0.00 3.13
272 273 1.072505 GGAAAGTGCGACAGGGGAA 59.927 57.895 0.00 0.00 0.00 3.97
273 274 1.701031 TTGGAAAGTGCGACAGGGGA 61.701 55.000 0.00 0.00 0.00 4.81
274 275 0.609131 ATTGGAAAGTGCGACAGGGG 60.609 55.000 0.00 0.00 0.00 4.79
275 276 0.804989 GATTGGAAAGTGCGACAGGG 59.195 55.000 0.00 0.00 0.00 4.45
276 277 1.466167 CAGATTGGAAAGTGCGACAGG 59.534 52.381 0.00 0.00 0.00 4.00
277 278 2.416747 TCAGATTGGAAAGTGCGACAG 58.583 47.619 0.00 0.00 0.00 3.51
278 279 2.542020 TCAGATTGGAAAGTGCGACA 57.458 45.000 0.00 0.00 0.00 4.35
279 280 3.686726 AGATTCAGATTGGAAAGTGCGAC 59.313 43.478 0.00 0.00 0.00 5.19
280 281 3.686241 CAGATTCAGATTGGAAAGTGCGA 59.314 43.478 0.00 0.00 0.00 5.10
281 282 3.686241 TCAGATTCAGATTGGAAAGTGCG 59.314 43.478 0.00 0.00 0.00 5.34
282 283 5.633830 TTCAGATTCAGATTGGAAAGTGC 57.366 39.130 0.00 0.00 0.00 4.40
283 284 6.034591 GCATTCAGATTCAGATTGGAAAGTG 58.965 40.000 3.97 0.00 0.00 3.16
284 285 5.163683 CGCATTCAGATTCAGATTGGAAAGT 60.164 40.000 3.97 0.00 0.00 2.66
285 286 5.271625 CGCATTCAGATTCAGATTGGAAAG 58.728 41.667 3.97 0.00 0.00 2.62
286 287 4.439153 GCGCATTCAGATTCAGATTGGAAA 60.439 41.667 0.30 0.00 0.00 3.13
287 288 3.065786 GCGCATTCAGATTCAGATTGGAA 59.934 43.478 0.30 0.00 0.00 3.53
288 289 2.615447 GCGCATTCAGATTCAGATTGGA 59.385 45.455 0.30 0.00 0.00 3.53
289 290 2.601504 CGCGCATTCAGATTCAGATTGG 60.602 50.000 8.75 0.00 0.00 3.16
290 291 2.031314 ACGCGCATTCAGATTCAGATTG 59.969 45.455 5.73 0.00 0.00 2.67
291 292 2.031314 CACGCGCATTCAGATTCAGATT 59.969 45.455 5.73 0.00 0.00 2.40
292 293 1.596260 CACGCGCATTCAGATTCAGAT 59.404 47.619 5.73 0.00 0.00 2.90
293 294 1.001624 CACGCGCATTCAGATTCAGA 58.998 50.000 5.73 0.00 0.00 3.27
294 295 0.723414 ACACGCGCATTCAGATTCAG 59.277 50.000 5.73 0.00 0.00 3.02
295 296 1.926510 CTACACGCGCATTCAGATTCA 59.073 47.619 5.73 0.00 0.00 2.57
296 297 1.332377 GCTACACGCGCATTCAGATTC 60.332 52.381 5.73 0.00 0.00 2.52
297 298 0.652592 GCTACACGCGCATTCAGATT 59.347 50.000 5.73 0.00 0.00 2.40
298 299 0.460109 TGCTACACGCGCATTCAGAT 60.460 50.000 5.73 0.00 43.27 2.90
299 300 0.669012 TTGCTACACGCGCATTCAGA 60.669 50.000 5.73 0.00 43.27 3.27
300 301 0.519175 GTTGCTACACGCGCATTCAG 60.519 55.000 5.73 0.00 43.27 3.02
301 302 0.948623 AGTTGCTACACGCGCATTCA 60.949 50.000 5.73 0.00 43.27 2.57
302 303 0.519175 CAGTTGCTACACGCGCATTC 60.519 55.000 5.73 0.00 43.27 2.67
303 304 1.227999 ACAGTTGCTACACGCGCATT 61.228 50.000 5.73 0.00 43.27 3.56
304 305 0.389296 TACAGTTGCTACACGCGCAT 60.389 50.000 5.73 0.00 43.27 4.73
305 306 1.006825 CTACAGTTGCTACACGCGCA 61.007 55.000 5.73 0.00 43.27 6.09
306 307 1.702299 CTACAGTTGCTACACGCGC 59.298 57.895 5.73 0.00 43.27 6.86
307 308 1.683790 GGCTACAGTTGCTACACGCG 61.684 60.000 3.53 3.53 43.27 6.01
308 309 0.669318 TGGCTACAGTTGCTACACGC 60.669 55.000 6.94 0.00 39.77 5.34
309 310 1.660607 CATGGCTACAGTTGCTACACG 59.339 52.381 6.94 0.00 0.00 4.49
310 311 2.416547 CACATGGCTACAGTTGCTACAC 59.583 50.000 6.94 0.00 0.00 2.90
311 312 2.038426 ACACATGGCTACAGTTGCTACA 59.962 45.455 6.94 0.00 0.00 2.74
312 313 2.673368 GACACATGGCTACAGTTGCTAC 59.327 50.000 6.94 0.00 0.00 3.58
313 314 2.301583 TGACACATGGCTACAGTTGCTA 59.698 45.455 6.94 0.83 0.00 3.49
314 315 1.072173 TGACACATGGCTACAGTTGCT 59.928 47.619 6.94 0.00 0.00 3.91
315 316 1.466167 CTGACACATGGCTACAGTTGC 59.534 52.381 0.00 0.00 0.00 4.17
316 317 2.079158 CCTGACACATGGCTACAGTTG 58.921 52.381 0.00 0.00 0.00 3.16
317 318 1.699634 ACCTGACACATGGCTACAGTT 59.300 47.619 0.00 0.00 0.00 3.16
318 319 1.276421 GACCTGACACATGGCTACAGT 59.724 52.381 0.00 0.00 0.00 3.55
319 320 1.552337 AGACCTGACACATGGCTACAG 59.448 52.381 0.00 1.29 0.00 2.74
320 321 1.276138 CAGACCTGACACATGGCTACA 59.724 52.381 0.00 0.00 0.00 2.74
321 322 2.009042 GCAGACCTGACACATGGCTAC 61.009 57.143 0.00 0.00 0.00 3.58
322 323 0.250234 GCAGACCTGACACATGGCTA 59.750 55.000 0.00 0.00 0.00 3.93
323 324 1.002868 GCAGACCTGACACATGGCT 60.003 57.895 0.00 0.00 0.00 4.75
324 325 1.002868 AGCAGACCTGACACATGGC 60.003 57.895 0.00 0.00 0.00 4.40
325 326 1.303799 GCAGCAGACCTGACACATGG 61.304 60.000 0.00 0.00 44.64 3.66
326 327 2.168947 GCAGCAGACCTGACACATG 58.831 57.895 0.47 0.00 44.64 3.21
327 328 4.709840 GCAGCAGACCTGACACAT 57.290 55.556 0.47 0.00 44.64 3.21
332 333 3.005539 GGGAGGCAGCAGACCTGA 61.006 66.667 0.47 0.00 44.64 3.86
333 334 4.106925 GGGGAGGCAGCAGACCTG 62.107 72.222 0.00 0.00 44.67 4.00
334 335 4.345286 AGGGGAGGCAGCAGACCT 62.345 66.667 0.00 0.00 41.41 3.85
335 336 4.106925 CAGGGGAGGCAGCAGACC 62.107 72.222 0.00 0.00 0.00 3.85
336 337 4.106925 CCAGGGGAGGCAGCAGAC 62.107 72.222 0.00 0.00 0.00 3.51
337 338 4.664267 ACCAGGGGAGGCAGCAGA 62.664 66.667 0.00 0.00 0.00 4.26
338 339 4.421515 CACCAGGGGAGGCAGCAG 62.422 72.222 0.00 0.00 0.00 4.24
339 340 3.863114 TACACCAGGGGAGGCAGCA 62.863 63.158 0.00 0.00 0.00 4.41
340 341 2.137177 TTTACACCAGGGGAGGCAGC 62.137 60.000 0.00 0.00 0.00 5.25
341 342 0.322546 GTTTACACCAGGGGAGGCAG 60.323 60.000 0.00 0.00 0.00 4.85
342 343 1.765074 GTTTACACCAGGGGAGGCA 59.235 57.895 0.00 0.00 0.00 4.75
343 344 1.376812 CGTTTACACCAGGGGAGGC 60.377 63.158 0.00 0.00 0.00 4.70
344 345 0.249398 CTCGTTTACACCAGGGGAGG 59.751 60.000 0.00 0.00 0.00 4.30
345 346 0.391263 GCTCGTTTACACCAGGGGAG 60.391 60.000 0.00 0.00 0.00 4.30
346 347 0.834687 AGCTCGTTTACACCAGGGGA 60.835 55.000 0.00 0.00 0.00 4.81
347 348 0.391263 GAGCTCGTTTACACCAGGGG 60.391 60.000 0.00 0.00 0.00 4.79
348 349 0.320374 TGAGCTCGTTTACACCAGGG 59.680 55.000 9.64 0.00 0.00 4.45
349 350 2.163818 TTGAGCTCGTTTACACCAGG 57.836 50.000 9.64 0.00 0.00 4.45
350 351 3.131396 ACTTTGAGCTCGTTTACACCAG 58.869 45.455 9.64 0.00 0.00 4.00
351 352 3.188159 ACTTTGAGCTCGTTTACACCA 57.812 42.857 9.64 0.00 0.00 4.17
352 353 4.547406 AAACTTTGAGCTCGTTTACACC 57.453 40.909 14.27 0.00 0.00 4.16
353 354 7.425595 GCATATAAACTTTGAGCTCGTTTACAC 59.574 37.037 20.64 11.14 36.35 2.90
354 355 7.333423 AGCATATAAACTTTGAGCTCGTTTACA 59.667 33.333 20.64 13.85 36.35 2.41
355 356 7.685594 AGCATATAAACTTTGAGCTCGTTTAC 58.314 34.615 20.64 12.14 36.35 2.01
356 357 7.843490 AGCATATAAACTTTGAGCTCGTTTA 57.157 32.000 20.55 20.55 37.47 2.01
357 358 6.743575 AGCATATAAACTTTGAGCTCGTTT 57.256 33.333 18.26 18.26 35.32 3.60
358 359 6.546395 CAAGCATATAAACTTTGAGCTCGTT 58.454 36.000 9.64 4.39 0.00 3.85
359 360 5.447818 GCAAGCATATAAACTTTGAGCTCGT 60.448 40.000 9.64 0.00 0.00 4.18
360 361 4.966366 GCAAGCATATAAACTTTGAGCTCG 59.034 41.667 9.64 0.00 0.00 5.03
361 362 5.883661 TGCAAGCATATAAACTTTGAGCTC 58.116 37.500 6.82 6.82 0.00 4.09
362 363 5.649395 TCTGCAAGCATATAAACTTTGAGCT 59.351 36.000 0.00 0.00 0.00 4.09
363 364 5.883661 TCTGCAAGCATATAAACTTTGAGC 58.116 37.500 0.00 0.00 0.00 4.26
364 365 6.493116 CCTCTGCAAGCATATAAACTTTGAG 58.507 40.000 0.00 0.00 0.00 3.02
367 368 4.706476 TGCCTCTGCAAGCATATAAACTTT 59.294 37.500 1.81 0.00 46.66 2.66
388 389 7.245604 CCATTTAAATTCCTGCTTGAAATTGC 58.754 34.615 0.00 0.00 0.00 3.56
408 409 7.284034 CCTCTTAGATGTGTGAATAAGCCATTT 59.716 37.037 0.00 0.00 0.00 2.32
420 421 8.037758 AGAGTATTTGTTCCTCTTAGATGTGTG 58.962 37.037 0.00 0.00 31.64 3.82
421 422 8.140112 AGAGTATTTGTTCCTCTTAGATGTGT 57.860 34.615 0.00 0.00 31.64 3.72
422 423 9.092876 GAAGAGTATTTGTTCCTCTTAGATGTG 57.907 37.037 0.00 0.00 43.64 3.21
423 424 8.816894 TGAAGAGTATTTGTTCCTCTTAGATGT 58.183 33.333 0.00 0.00 43.64 3.06
426 427 8.423906 AGTGAAGAGTATTTGTTCCTCTTAGA 57.576 34.615 0.00 0.00 43.64 2.10
450 451 7.278868 AGACTATTATCAACGAAAAGCCTCAAG 59.721 37.037 0.00 0.00 0.00 3.02
454 455 6.702282 GCTAGACTATTATCAACGAAAAGCCT 59.298 38.462 0.00 0.00 0.00 4.58
488 501 1.277557 ACTGAAGGAGGCTACAGCAAG 59.722 52.381 0.00 0.00 44.36 4.01
496 509 1.439543 AAGGTTGACTGAAGGAGGCT 58.560 50.000 0.00 0.00 0.00 4.58
501 514 2.079925 GCAGCTAAGGTTGACTGAAGG 58.920 52.381 0.00 0.00 31.67 3.46
530 545 8.470657 AAACAAAGAAAGAGAAAAGCCTAGAT 57.529 30.769 0.00 0.00 0.00 1.98
615 642 2.879070 GCAGATCAGATGCGCCACG 61.879 63.158 4.18 0.00 33.31 4.94
700 757 0.991920 AGCCAGAAGGAAAATCCGGA 59.008 50.000 6.61 6.61 42.75 5.14
740 797 1.203287 GGCCTTCTCAAATGTTGCTCC 59.797 52.381 0.00 0.00 0.00 4.70
810 867 5.046735 ACTCTGCTATCATCAGTTCAACACT 60.047 40.000 0.00 0.00 35.35 3.55
812 869 5.411831 ACTCTGCTATCATCAGTTCAACA 57.588 39.130 0.00 0.00 33.48 3.33
813 870 6.734104 AAACTCTGCTATCATCAGTTCAAC 57.266 37.500 0.00 0.00 33.48 3.18
814 871 6.536582 GCTAAACTCTGCTATCATCAGTTCAA 59.463 38.462 0.00 0.00 33.48 2.69
821 917 7.923888 TCAAAATGCTAAACTCTGCTATCATC 58.076 34.615 0.00 0.00 0.00 2.92
1313 1412 0.883833 CATCCAAAGTGTGTGGCCTC 59.116 55.000 3.32 0.00 35.99 4.70
1345 1444 2.158959 CGTCTTCATCCGCCGTGAC 61.159 63.158 0.00 0.00 0.00 3.67
1353 1452 1.590259 GGCTCTCGCGTCTTCATCC 60.590 63.158 5.77 0.00 36.88 3.51
1596 1698 3.762293 GCACCATGCCAAGTGACA 58.238 55.556 4.25 0.00 37.42 3.58
1744 1846 1.332997 GTACGGTGAATCGTCGGAGAT 59.667 52.381 0.00 0.00 42.82 2.75
1800 1902 1.197430 AGCTGTTCCAGGTGAGGAGG 61.197 60.000 0.00 0.00 40.87 4.30
1976 2078 3.059982 CTTCCACTCTCCGGCACA 58.940 61.111 0.00 0.00 0.00 4.57
2302 2404 7.254421 GGTGCATCCAAGTAAACAAAAGAAAAG 60.254 37.037 0.00 0.00 35.97 2.27
2341 2443 5.856156 ACTTATCTCTGCTGGATGATTCAG 58.144 41.667 0.00 0.00 35.49 3.02
2367 2469 2.654863 CACAACCTCCCTTGTGTCTTT 58.345 47.619 4.25 0.00 44.09 2.52
2368 2470 2.348411 CACAACCTCCCTTGTGTCTT 57.652 50.000 4.25 0.00 44.09 3.01
2373 2475 1.151450 CCAGCACAACCTCCCTTGT 59.849 57.895 0.00 0.00 34.56 3.16
2374 2476 1.604593 CCCAGCACAACCTCCCTTG 60.605 63.158 0.00 0.00 0.00 3.61
2375 2477 1.774217 TCCCAGCACAACCTCCCTT 60.774 57.895 0.00 0.00 0.00 3.95
2377 2479 2.224159 TCTCCCAGCACAACCTCCC 61.224 63.158 0.00 0.00 0.00 4.30
2378 2480 1.003233 GTCTCCCAGCACAACCTCC 60.003 63.158 0.00 0.00 0.00 4.30
2381 2483 1.302832 CCTGTCTCCCAGCACAACC 60.303 63.158 0.00 0.00 40.06 3.77
2382 2484 0.179018 AACCTGTCTCCCAGCACAAC 60.179 55.000 0.00 0.00 40.06 3.32
2385 2487 2.359900 CATAAACCTGTCTCCCAGCAC 58.640 52.381 0.00 0.00 40.06 4.40
2386 2488 1.340017 GCATAAACCTGTCTCCCAGCA 60.340 52.381 0.00 0.00 40.06 4.41
2387 2489 1.065126 AGCATAAACCTGTCTCCCAGC 60.065 52.381 0.00 0.00 40.06 4.85
2389 2491 3.806949 AAAGCATAAACCTGTCTCCCA 57.193 42.857 0.00 0.00 0.00 4.37
2393 2495 8.322091 ACAATAGTCTAAAGCATAAACCTGTCT 58.678 33.333 0.00 0.00 0.00 3.41
2394 2496 8.494016 ACAATAGTCTAAAGCATAAACCTGTC 57.506 34.615 0.00 0.00 0.00 3.51
2395 2497 8.730680 CAACAATAGTCTAAAGCATAAACCTGT 58.269 33.333 0.00 0.00 0.00 4.00
2396 2498 7.698130 GCAACAATAGTCTAAAGCATAAACCTG 59.302 37.037 0.00 0.00 0.00 4.00
2397 2499 7.414098 CGCAACAATAGTCTAAAGCATAAACCT 60.414 37.037 0.00 0.00 0.00 3.50
2399 2501 6.194692 GCGCAACAATAGTCTAAAGCATAAAC 59.805 38.462 0.30 0.00 0.00 2.01
2400 2502 6.255215 GCGCAACAATAGTCTAAAGCATAAA 58.745 36.000 0.30 0.00 0.00 1.40
2401 2503 5.220777 GGCGCAACAATAGTCTAAAGCATAA 60.221 40.000 10.83 0.00 0.00 1.90
2402 2504 4.272504 GGCGCAACAATAGTCTAAAGCATA 59.727 41.667 10.83 0.00 0.00 3.14
2403 2505 3.065371 GGCGCAACAATAGTCTAAAGCAT 59.935 43.478 10.83 0.00 0.00 3.79
2404 2506 2.418628 GGCGCAACAATAGTCTAAAGCA 59.581 45.455 10.83 0.00 0.00 3.91
2405 2507 2.536928 CGGCGCAACAATAGTCTAAAGC 60.537 50.000 10.83 0.00 0.00 3.51
2406 2508 2.671396 ACGGCGCAACAATAGTCTAAAG 59.329 45.455 10.83 0.00 0.00 1.85
2407 2509 2.669434 GACGGCGCAACAATAGTCTAAA 59.331 45.455 10.83 0.00 0.00 1.85
2409 2511 1.475280 AGACGGCGCAACAATAGTCTA 59.525 47.619 10.83 0.00 37.21 2.59
2410 2512 0.246635 AGACGGCGCAACAATAGTCT 59.753 50.000 10.83 8.82 34.54 3.24
2411 2513 0.370273 CAGACGGCGCAACAATAGTC 59.630 55.000 10.83 6.59 0.00 2.59
2412 2514 1.019278 CCAGACGGCGCAACAATAGT 61.019 55.000 10.83 0.00 0.00 2.12
2413 2515 0.739462 TCCAGACGGCGCAACAATAG 60.739 55.000 10.83 0.00 0.00 1.73
2415 2517 2.031919 TCCAGACGGCGCAACAAT 59.968 55.556 10.83 0.00 0.00 2.71
2417 2519 3.158537 TTCTCCAGACGGCGCAACA 62.159 57.895 10.83 0.00 0.00 3.33
2418 2520 2.357034 TTCTCCAGACGGCGCAAC 60.357 61.111 10.83 0.00 0.00 4.17
2420 2522 2.989253 TCTTCTCCAGACGGCGCA 60.989 61.111 10.83 0.00 0.00 6.09
2421 2523 2.010582 ATCTCTTCTCCAGACGGCGC 62.011 60.000 6.90 0.00 0.00 6.53
2422 2524 0.457851 AATCTCTTCTCCAGACGGCG 59.542 55.000 4.80 4.80 0.00 6.46
2423 2525 2.093973 TGAAATCTCTTCTCCAGACGGC 60.094 50.000 0.00 0.00 0.00 5.68
2424 2526 3.876274 TGAAATCTCTTCTCCAGACGG 57.124 47.619 0.00 0.00 0.00 4.79
2425 2527 5.119898 CAGTTTGAAATCTCTTCTCCAGACG 59.880 44.000 0.00 0.00 0.00 4.18
2426 2528 5.411053 CCAGTTTGAAATCTCTTCTCCAGAC 59.589 44.000 0.00 0.00 0.00 3.51
2427 2529 5.513788 CCCAGTTTGAAATCTCTTCTCCAGA 60.514 44.000 0.00 0.00 0.00 3.86
2428 2530 4.699257 CCCAGTTTGAAATCTCTTCTCCAG 59.301 45.833 0.00 0.00 0.00 3.86
2429 2531 4.350816 TCCCAGTTTGAAATCTCTTCTCCA 59.649 41.667 0.00 0.00 0.00 3.86
2430 2532 4.911390 TCCCAGTTTGAAATCTCTTCTCC 58.089 43.478 0.00 0.00 0.00 3.71
2431 2533 6.884280 TTTCCCAGTTTGAAATCTCTTCTC 57.116 37.500 0.00 0.00 0.00 2.87
2433 2535 8.893219 AAAATTTCCCAGTTTGAAATCTCTTC 57.107 30.769 0.00 0.00 40.57 2.87
2434 2536 9.987272 CTAAAATTTCCCAGTTTGAAATCTCTT 57.013 29.630 0.00 0.00 40.57 2.85
2435 2537 9.367160 TCTAAAATTTCCCAGTTTGAAATCTCT 57.633 29.630 0.00 0.00 40.57 3.10
2436 2538 9.411801 GTCTAAAATTTCCCAGTTTGAAATCTC 57.588 33.333 0.00 0.00 40.57 2.75
2437 2539 8.923270 TGTCTAAAATTTCCCAGTTTGAAATCT 58.077 29.630 0.00 0.00 40.57 2.40
2438 2540 9.710900 ATGTCTAAAATTTCCCAGTTTGAAATC 57.289 29.630 0.00 0.00 40.57 2.17
2441 2543 8.802267 CCTATGTCTAAAATTTCCCAGTTTGAA 58.198 33.333 0.00 0.00 0.00 2.69
2442 2544 8.167392 TCCTATGTCTAAAATTTCCCAGTTTGA 58.833 33.333 0.00 0.00 0.00 2.69
2443 2545 8.244113 GTCCTATGTCTAAAATTTCCCAGTTTG 58.756 37.037 0.00 0.00 0.00 2.93
2448 2708 7.027874 ACAGTCCTATGTCTAAAATTTCCCA 57.972 36.000 0.00 0.00 0.00 4.37
2476 2736 3.288964 CCAGGGACGAGTAGTATGTTCT 58.711 50.000 0.00 0.00 0.00 3.01
2497 2757 4.451900 ACTGGCTAATTATGTAGTGGCAC 58.548 43.478 10.29 10.29 0.00 5.01
2523 2783 6.618287 TTTCCTGAATCTACACACACAAAG 57.382 37.500 0.00 0.00 0.00 2.77
2551 2811 7.107542 AGCTGTTTGCCATTTCATGAATAAAT 58.892 30.769 9.40 0.00 44.23 1.40
2622 2893 4.097589 AGGGTGCAGTACTACGAAATACTC 59.902 45.833 0.00 0.00 28.91 2.59
2630 2901 1.174783 ACTGAGGGTGCAGTACTACG 58.825 55.000 0.00 0.00 46.67 3.51
2712 2983 9.341899 CAGTAGTACAAAATATTTGCAGTTTCC 57.658 33.333 0.39 0.00 0.00 3.13
2716 2987 7.305474 GTGCAGTAGTACAAAATATTTGCAGT 58.695 34.615 9.16 4.22 39.39 4.40
2717 2988 6.747280 GGTGCAGTAGTACAAAATATTTGCAG 59.253 38.462 9.16 0.00 39.39 4.41
2718 2989 6.349777 GGGTGCAGTAGTACAAAATATTTGCA 60.350 38.462 0.39 4.40 36.77 4.08
2719 2990 6.033966 GGGTGCAGTAGTACAAAATATTTGC 58.966 40.000 0.39 1.73 31.27 3.68
2720 2991 7.120579 TGAGGGTGCAGTAGTACAAAATATTTG 59.879 37.037 0.39 1.47 31.27 2.32
2721 2992 7.172342 TGAGGGTGCAGTAGTACAAAATATTT 58.828 34.615 2.52 0.00 31.27 1.40
2722 2993 6.717289 TGAGGGTGCAGTAGTACAAAATATT 58.283 36.000 2.52 0.00 31.27 1.28
2723 2994 6.070194 ACTGAGGGTGCAGTAGTACAAAATAT 60.070 38.462 2.52 0.00 46.67 1.28
2725 2996 4.041691 ACTGAGGGTGCAGTAGTACAAAAT 59.958 41.667 2.52 0.00 46.67 1.82
2727 2998 2.969950 ACTGAGGGTGCAGTAGTACAAA 59.030 45.455 2.52 0.00 46.67 2.83
2728 2999 2.605257 ACTGAGGGTGCAGTAGTACAA 58.395 47.619 2.52 0.00 46.67 2.41
2729 3000 2.304221 ACTGAGGGTGCAGTAGTACA 57.696 50.000 2.52 0.00 46.67 2.90
2736 3007 0.904649 TACCATGACTGAGGGTGCAG 59.095 55.000 0.00 0.00 39.74 4.41
2739 3010 2.567169 TGAAGTACCATGACTGAGGGTG 59.433 50.000 0.00 0.00 39.74 4.61
2740 3011 2.902608 TGAAGTACCATGACTGAGGGT 58.097 47.619 0.00 0.00 42.90 4.34
2742 3013 3.201290 GCATGAAGTACCATGACTGAGG 58.799 50.000 14.19 0.00 44.98 3.86
2743 3014 3.865446 TGCATGAAGTACCATGACTGAG 58.135 45.455 14.19 0.00 44.98 3.35
2795 3066 4.082787 CCAACAGAATTTACCGCATCAAGT 60.083 41.667 0.00 0.00 0.00 3.16
2804 3075 8.062065 TGAAATGTATCCCAACAGAATTTACC 57.938 34.615 0.00 0.00 31.70 2.85
2818 3093 5.412594 TCTTGTGAACTGCTGAAATGTATCC 59.587 40.000 0.00 0.00 0.00 2.59
2863 3139 3.344137 ATGCTACAACCGGGGGCAG 62.344 63.158 6.32 0.00 36.35 4.85
2981 3257 6.818142 GGCATTGGCACTTAACTGATTAAAAT 59.182 34.615 5.17 0.00 43.71 1.82
3047 3326 3.733224 CACTCAAGTATCGTAGCATCAGC 59.267 47.826 0.00 0.00 42.56 4.26
3080 3359 3.665745 TCTGAATTTTTGCCTCCAAGC 57.334 42.857 0.00 0.00 31.52 4.01
3202 3481 6.995511 TGCCGATGTTAATTAAGCTTAGTT 57.004 33.333 17.14 17.14 0.00 2.24
3285 3564 9.696917 GTGTCAAATGTCAATTAGAAGGAAATT 57.303 29.630 0.00 0.00 0.00 1.82
3388 3668 7.491048 TGAGAAACAATTAAAGCCACAACTTTC 59.509 33.333 0.00 0.00 40.32 2.62
3403 3804 7.449395 TCCATCATTCTGAACTGAGAAACAATT 59.551 33.333 0.00 0.00 35.60 2.32
4085 4497 6.627087 ACTTGATTCTGTCCCTAAGATTGA 57.373 37.500 0.00 0.00 0.00 2.57
4098 4510 2.205022 TCCCTGCCAACTTGATTCTG 57.795 50.000 0.00 0.00 0.00 3.02
4122 4534 2.241176 CCAGGCAATGGGAGTAAAGGTA 59.759 50.000 0.00 0.00 46.36 3.08
4233 4646 9.830975 ACAACAGCCTTTAGTTTTTGAATTATT 57.169 25.926 0.00 0.00 0.00 1.40
4374 4790 6.995091 AGCTCATCCTAAATTACTGAATCACC 59.005 38.462 0.00 0.00 0.00 4.02
4376 4792 9.770097 CTAAGCTCATCCTAAATTACTGAATCA 57.230 33.333 0.00 0.00 0.00 2.57
4461 4877 3.517500 TGTGGCTTTGGGGGATTTAAATC 59.482 43.478 18.22 18.22 34.66 2.17
4591 5015 7.456902 AGAAAATAGTGTGGGTCTTACTAAGGA 59.543 37.037 0.00 0.00 31.40 3.36
5112 5555 2.689983 CCTGGTATGTCCATTTTCCTGC 59.310 50.000 0.00 0.00 46.12 4.85
5267 5710 4.603131 ACCACCACTATGCTGAAAATCAT 58.397 39.130 0.00 0.00 0.00 2.45
5311 5754 1.229428 CACTTCGGTGCTTCACATGT 58.771 50.000 0.00 0.00 39.22 3.21
5395 5839 6.103330 GGAATAGAAACACCTTCTCTGAGAC 58.897 44.000 6.92 0.00 43.66 3.36
5403 5847 4.271291 GCATCTCGGAATAGAAACACCTTC 59.729 45.833 0.00 0.00 0.00 3.46
5419 5863 5.784750 TGAAGATAAACACAAGCATCTCG 57.215 39.130 0.00 0.00 0.00 4.04
5422 5866 6.810182 AGCAAATGAAGATAAACACAAGCATC 59.190 34.615 0.00 0.00 0.00 3.91
5449 5894 7.062322 ACATGCTATGATGGAAACCTTATTCA 58.938 34.615 0.00 0.00 0.00 2.57
5514 5963 0.238289 AAAAATGAGCAGCCGACACG 59.762 50.000 0.00 0.00 0.00 4.49
5535 5988 4.855340 TCTTTAGCCTTTATTGTGAGGGG 58.145 43.478 0.00 0.00 33.52 4.79
5536 5989 5.532779 GGATCTTTAGCCTTTATTGTGAGGG 59.467 44.000 0.00 0.00 33.52 4.30
5542 5997 6.603201 TGAGGTTGGATCTTTAGCCTTTATTG 59.397 38.462 0.00 0.00 30.18 1.90
5556 6011 3.197766 TGGTCATACACTGAGGTTGGATC 59.802 47.826 0.00 0.00 33.51 3.36
5711 6175 6.672147 AGTTCCTGCATGCGAAAAATATATC 58.328 36.000 14.09 0.00 0.00 1.63
5924 6794 2.669569 GGCACCGCTCAAAGCTCA 60.670 61.111 0.00 0.00 39.60 4.26
5936 6806 0.598065 CTGCAGGTTTACTTGGCACC 59.402 55.000 5.57 0.00 0.00 5.01
5969 6850 1.899142 CTGGAGGCCCTTCTATCTAGC 59.101 57.143 0.00 0.00 0.00 3.42
6027 6913 1.524008 GGGCACTGCGGCTAGTTTTT 61.524 55.000 0.00 0.00 40.90 1.94
6028 6914 1.971695 GGGCACTGCGGCTAGTTTT 60.972 57.895 0.00 0.00 40.90 2.43
6029 6915 2.359975 GGGCACTGCGGCTAGTTT 60.360 61.111 0.00 0.00 40.90 2.66
6030 6916 4.410400 GGGGCACTGCGGCTAGTT 62.410 66.667 0.00 0.00 40.90 2.24
6131 7017 3.597728 GGAGACTAGGCGCCGGAG 61.598 72.222 23.20 24.12 0.00 4.63
6142 7028 2.285743 GGGGAAGCAGGGGAGACT 60.286 66.667 0.00 0.00 0.00 3.24
6162 7049 2.124193 CATGGCCGCCTGGAATGA 60.124 61.111 11.61 0.00 37.49 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.