AutoCloner

Multiple sequence alignment - TraesCS2D01G537400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS2D01G537400	chr2D	100.000	3299	0	0	1	3299	619335123	619331825	0.000000e+00	6093
1	TraesCS2D01G537400	chr2D	92.894	2871	127	22	190	3044	619373268	619370459	0.000000e+00	4100
2	TraesCS2D01G537400	chr2D	83.272	544	78	5	2650	3191	585893098	585893630	3.830000e-134	488
3	TraesCS2D01G537400	chr2D	79.848	660	114	14	2646	3298	585916894	585916247	6.450000e-127	464
4	TraesCS2D01G537400	chr2D	75.935	428	78	20	1424	1846	59452426	59452019	2.600000e-46	196
5	TraesCS2D01G537400	chr2D	99.000	100	1	0	1	100	619373689	619373590	2.620000e-41	180
6	TraesCS2D01G537400	chr2D	85.897	156	19	2	650	802	241661891	241662046	2.630000e-36	163
7	TraesCS2D01G537400	chr2A	94.149	1675	87	7	804	2473	750531697	750530029	0.000000e+00	2540
8	TraesCS2D01G537400	chr2A	85.429	700	66	20	107	771	750532393	750531695	0.000000e+00	695
9	TraesCS2D01G537400	chr2A	80.974	657	104	12	2650	3298	720059494	720060137	4.910000e-138	501
10	TraesCS2D01G537400	chr2A	80.514	662	115	11	2646	3298	720313896	720314552	2.290000e-136	496
11	TraesCS2D01G537400	chr2A	86.452	155	17	3	653	806	690522322	690522473	2.040000e-37	167
12	TraesCS2D01G537400	chr2A	92.708	96	6	1	5	100	750532677	750532583	1.600000e-28	137
13	TraesCS2D01G537400	chr2B	91.800	1683	99	10	790	2448	758807399	758809066	0.000000e+00	2307
14	TraesCS2D01G537400	chr2B	92.449	1576	101	8	787	2351	758085749	758084181	0.000000e+00	2235
15	TraesCS2D01G537400	chr2B	83.686	662	85	13	2645	3298	707670402	707671048	1.310000e-168	603
16	TraesCS2D01G537400	chr2B	81.118	662	111	11	2646	3298	707461713	707462369	4.880000e-143	518
17	TraesCS2D01G537400	chr2B	80.152	660	112	13	2646	3298	707690016	707690663	2.980000e-130	475
18	TraesCS2D01G537400	chr2B	80.060	662	110	15	2646	3298	707630324	707630972	3.850000e-129	472
19	TraesCS2D01G537400	chr2B	91.093	247	20	2	403	648	758086080	758085835	1.900000e-87	333
20	TraesCS2D01G537400	chr2B	86.742	264	17	10	95	356	758806837	758807084	9.020000e-71	278
21	TraesCS2D01G537400	chr2B	89.151	212	20	3	439	648	758807101	758807311	9.080000e-66	261
22	TraesCS2D01G537400	chr2B	94.000	100	6	0	1	100	758806688	758806787	5.700000e-33	152
23	TraesCS2D01G537400	chr2B	88.525	122	10	2	2460	2577	758875576	758875697	9.540000e-31	145
24	TraesCS2D01G537400	chr2B	92.000	100	8	0	1	100	758087605	758087506	1.230000e-29	141
25	TraesCS2D01G537400	chr2B	92.000	100	8	0	1	100	758805315	758805414	1.230000e-29	141
26	TraesCS2D01G537400	chr7B	87.417	151	16	2	657	805	296323812	296323961	1.570000e-38	171
27	TraesCS2D01G537400	chr4B	87.417	151	12	4	657	802	146469364	146469216	2.040000e-37	167
28	TraesCS2D01G537400	chr7D	85.625	160	19	2	647	802	34756859	34757018	7.320000e-37	165
29	TraesCS2D01G537400	chr4A	86.275	153	18	2	653	802	460230801	460230649	2.630000e-36	163
30	TraesCS2D01G537400	chr3D	86.275	153	18	1	653	802	441388819	441388667	2.630000e-36	163
31	TraesCS2D01G537400	chr5A	84.756	164	20	2	652	812	457089350	457089189	3.410000e-35	159

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS2D01G537400	chr2D	619331825	619335123	3298	True	6093.0	6093	100.000000	1	3299	1	chr2D.!!$R3	3298
1	TraesCS2D01G537400	chr2D	619370459	619373689	3230	True	2140.0	4100	95.947000	1	3044	2	chr2D.!!$R4	3043
2	TraesCS2D01G537400	chr2D	585893098	585893630	532	False	488.0	488	83.272000	2650	3191	1	chr2D.!!$F2	541
3	TraesCS2D01G537400	chr2D	585916247	585916894	647	True	464.0	464	79.848000	2646	3298	1	chr2D.!!$R2	652
4	TraesCS2D01G537400	chr2A	750530029	750532677	2648	True	1124.0	2540	90.762000	5	2473	3	chr2A.!!$R1	2468
5	TraesCS2D01G537400	chr2A	720059494	720060137	643	False	501.0	501	80.974000	2650	3298	1	chr2A.!!$F2	648
6	TraesCS2D01G537400	chr2A	720313896	720314552	656	False	496.0	496	80.514000	2646	3298	1	chr2A.!!$F3	652
7	TraesCS2D01G537400	chr2B	758084181	758087605	3424	True	903.0	2235	91.847333	1	2351	3	chr2B.!!$R1	2350
8	TraesCS2D01G537400	chr2B	758805315	758809066	3751	False	627.8	2307	90.738600	1	2448	5	chr2B.!!$F6	2447
9	TraesCS2D01G537400	chr2B	707670402	707671048	646	False	603.0	603	83.686000	2645	3298	1	chr2B.!!$F3	653
10	TraesCS2D01G537400	chr2B	707461713	707462369	656	False	518.0	518	81.118000	2646	3298	1	chr2B.!!$F1	652
11	TraesCS2D01G537400	chr2B	707690016	707690663	647	False	475.0	475	80.152000	2646	3298	1	chr2B.!!$F4	652
12	TraesCS2D01G537400	chr2B	707630324	707630972	648	False	472.0	472	80.060000	2646	3298	1	chr2B.!!$F2	652

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Hairpin	End Stability	Orientation
220	1867	1.118838	TTGGTTGAAAGCCCACCAAG	58.881	50.000	0.00	35.77	3.61	F
385	2038	1.925255	AGGGAATGATCTTGCCTCCAA	59.075	47.619	10.69	35.12	3.53	F
1823	3534	1.026182	GGCACACGCATCAAGATGGA	61.026	55.000	11.66	41.24	3.41	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1805	3516	1.019673	ATCCATCTTGATGCGTGTGC	58.980	50.0	5.16	0.00	43.20	4.57	R
1881	3595	1.398692	GATCAGAGGAAGGAGCTCGT	58.601	55.0	7.83	5.12	0.00	4.18	R
2825	4574	0.105964	TGTGTTCAAGACCGTCTGGG	59.894	55.0	0.65	0.00	40.75	4.45	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
118	1632	5.441718	AAATGGCATCTACTTGAGAAGGA	57.558	39.130	0.00	0.00	37.85	3.36
142	1656	9.608617	GGAAGCTAGTAAGAAATTAACAACAAC	57.391	33.333	0.00	0.00	0.00	3.32
164	1678	8.921670	ACAACAAAAGTTCATTTTAGTTGTCAC	58.078	29.630	17.92	0.00	46.20	3.67
214	1861	3.247411	CGTTTGAATTTGGTTGAAAGCCC	59.753	43.478	0.00	0.00	0.00	5.19
220	1867	1.118838	TTGGTTGAAAGCCCACCAAG	58.881	50.000	0.00	0.00	35.77	3.61
311	1958	8.517878	ACTTTAGTGTAATAGCGAAGTCTGTTA	58.482	33.333	0.00	0.00	0.00	2.41
385	2038	1.925255	AGGGAATGATCTTGCCTCCAA	59.075	47.619	10.69	0.00	35.12	3.53
661	2350	5.370880	TCGACTATTTACTAGTACCCCCTCT	59.629	44.000	0.91	0.00	40.88	3.69
776	2476	7.493367	TCCGATTCACAAAAAGGTTAAAACAT	58.507	30.769	0.00	0.00	0.00	2.71
777	2477	8.630917	TCCGATTCACAAAAAGGTTAAAACATA	58.369	29.630	0.00	0.00	0.00	2.29
778	2478	9.250624	CCGATTCACAAAAAGGTTAAAACATAA	57.749	29.630	0.00	0.00	0.00	1.90
1113	2824	2.098831	GTCCAAAGTCTACCGCGCC	61.099	63.158	0.00	0.00	0.00	6.53
1650	3361	4.309950	GTGTGGTCCTCGGGCGTT	62.310	66.667	0.00	0.00	0.00	4.84
1821	3532	1.061411	CGGCACACGCATCAAGATG	59.939	57.895	5.70	5.70	41.24	2.90
1823	3534	1.026182	GGCACACGCATCAAGATGGA	61.026	55.000	11.66	0.00	41.24	3.41
2051	3765	2.224450	GGTTTGCTGTAGTAGGTGTGGT	60.224	50.000	0.00	0.00	0.00	4.16
2057	3771	3.262420	CTGTAGTAGGTGTGGTCATTGC	58.738	50.000	0.00	0.00	0.00	3.56
2176	3893	0.181114	CCAAAGGGAGATCATCGCCA	59.819	55.000	9.94	0.00	41.73	5.69
2193	3910	1.208776	GCCATGGTTAGGGTTAGTCGT	59.791	52.381	14.67	0.00	0.00	4.34
2273	3990	1.834856	CTGTGGGAGAGGCTTCAGCA	61.835	60.000	0.00	0.00	44.36	4.41
2328	4045	8.575649	AAATACTTCCAACCCAATGTAAGTAG	57.424	34.615	0.00	0.00	34.11	2.57
2534	4271	8.340757	AGTAACCATAATTTAAGATGGGACCAA	58.659	33.333	14.31	0.00	45.94	3.67
2535	4272	7.660030	AACCATAATTTAAGATGGGACCAAG	57.340	36.000	14.31	0.00	45.94	3.61
2548	4285	3.049674	CCAAGCCATGACGCACGT	61.050	61.111	0.00	0.00	0.00	4.49
2549	4286	1.739929	CCAAGCCATGACGCACGTA	60.740	57.895	0.00	0.00	0.00	3.57
2550	4287	1.419922	CAAGCCATGACGCACGTAC	59.580	57.895	0.00	0.00	0.00	3.67
2551	4288	1.014044	CAAGCCATGACGCACGTACT	61.014	55.000	0.00	0.00	0.00	2.73
2552	4289	1.014044	AAGCCATGACGCACGTACTG	61.014	55.000	0.00	0.00	0.00	2.74
2553	4290	1.445410	GCCATGACGCACGTACTGA	60.445	57.895	0.00	0.00	0.00	3.41
2554	4291	1.011968	GCCATGACGCACGTACTGAA	61.012	55.000	0.00	0.00	0.00	3.02
2555	4292	0.992072	CCATGACGCACGTACTGAAG	59.008	55.000	0.00	0.00	0.00	3.02
2556	4293	1.668919	CCATGACGCACGTACTGAAGT	60.669	52.381	0.00	0.00	0.00	3.01
2557	4294	2.414957	CCATGACGCACGTACTGAAGTA	60.415	50.000	0.00	0.00	0.00	2.24
2558	4295	2.320805	TGACGCACGTACTGAAGTAC	57.679	50.000	10.07	10.07	45.47	2.73
2605	4342	4.141642	TGCACAGCAGGAGTACATAATCAT	60.142	41.667	0.00	0.00	33.32	2.45
2606	4343	4.818546	GCACAGCAGGAGTACATAATCATT	59.181	41.667	0.00	0.00	0.00	2.57
2607	4344	5.297776	GCACAGCAGGAGTACATAATCATTT	59.702	40.000	0.00	0.00	0.00	2.32
2608	4345	6.183360	GCACAGCAGGAGTACATAATCATTTT	60.183	38.462	0.00	0.00	0.00	1.82
2611	4348	6.769822	CAGCAGGAGTACATAATCATTTTCCT	59.230	38.462	0.00	0.00	34.27	3.36
2612	4349	7.933577	CAGCAGGAGTACATAATCATTTTCCTA	59.066	37.037	0.00	0.00	32.78	2.94
2614	4351	7.715249	GCAGGAGTACATAATCATTTTCCTACA	59.285	37.037	0.00	0.00	32.78	2.74
2616	4353	8.768397	AGGAGTACATAATCATTTTCCTACACA	58.232	33.333	0.00	0.00	32.30	3.72
2617	4354	8.827677	GGAGTACATAATCATTTTCCTACACAC	58.172	37.037	0.00	0.00	0.00	3.82
2618	4355	9.378551	GAGTACATAATCATTTTCCTACACACA	57.621	33.333	0.00	0.00	0.00	3.72
2621	4361	8.579850	ACATAATCATTTTCCTACACACACAT	57.420	30.769	0.00	0.00	0.00	3.21
2632	4372	5.048294	TCCTACACACACATACACACTACAG	60.048	44.000	0.00	0.00	0.00	2.74
2825	4574	2.988010	TGACATGAGTGGCCTATCAC	57.012	50.000	11.97	0.00	37.89	3.06
2828	4577	0.839277	CATGAGTGGCCTATCACCCA	59.161	55.000	11.97	0.00	38.34	4.51
2946	4697	5.007724	GCTTTACCATCTTCCCATAGTTTCG	59.992	44.000	0.00	0.00	0.00	3.46
3045	4801	4.682778	TTACATAAGCTGTAAGGCCGAT	57.317	40.909	0.00	0.00	43.72	4.18
3047	4803	4.891992	ACATAAGCTGTAAGGCCGATAT	57.108	40.909	0.00	0.00	35.91	1.63
3058	4814	7.350744	TGTAAGGCCGATATAGTTCTTTACA	57.649	36.000	0.00	0.00	0.00	2.41
3079	4835	1.072331	AGTTGCGGTGAGGTGATCTTT	59.928	47.619	0.00	0.00	0.00	2.52
3089	4845	4.154918	GTGAGGTGATCTTTAAGCCACTTG	59.845	45.833	13.65	0.00	0.00	3.16
3103	4859	2.787994	CCACTTGCAATCTCCAAGAGT	58.212	47.619	0.00	0.00	41.64	3.24
3105	4861	4.521146	CCACTTGCAATCTCCAAGAGTAT	58.479	43.478	0.00	0.00	41.64	2.12
3113	4869	5.661458	CAATCTCCAAGAGTATAACACCGT	58.339	41.667	0.00	0.00	0.00	4.83
3162	4918	9.936329	AGAAAATACACCTCCCATAACATATTT	57.064	29.630	0.00	0.00	0.00	1.40
3177	4933	5.900339	ACATATTTAGGCGACATGTAACG	57.100	39.130	0.00	0.00	0.00	3.18
3184	4940	2.229543	AGGCGACATGTAACGACTGTTA	59.770	45.455	14.02	0.00	46.38	2.41
3191	4948	6.520792	ACATGTAACGACTGTTAAGACAAC	57.479	37.500	0.00	0.00	41.99	3.32
3192	4949	5.464389	ACATGTAACGACTGTTAAGACAACC	59.536	40.000	0.00	0.00	41.99	3.77
3193	4950	5.008619	TGTAACGACTGTTAAGACAACCA	57.991	39.130	0.00	0.00	41.99	3.67
3199	4956	5.163794	ACGACTGTTAAGACAACCAAACAAG	60.164	40.000	0.00	0.00	34.85	3.16
3203	4961	8.514330	ACTGTTAAGACAACCAAACAAGAATA	57.486	30.769	0.00	0.00	34.85	1.75
3272	5036	9.512435	TCGCTAGTTCATTGAATTACTTACTAC	57.488	33.333	1.78	0.00	0.00	2.73
3273	5037	9.297586	CGCTAGTTCATTGAATTACTTACTACA	57.702	33.333	1.78	0.00	0.00	2.74
3286	5050	3.914435	ACTTACTACATCCCAACAACCCT	59.086	43.478	0.00	0.00	0.00	4.34
3298	5062	3.283751	CAACAACCCTGGTAGTGTTTGA	58.716	45.455	4.09	0.00	29.72	2.69

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
135	1649	9.267084	ACAACTAAAATGAACTTTTGTTGTTGT	57.733	25.926	17.33	16.09	44.85	3.32
142	1656	9.352784	TGAAGTGACAACTAAAATGAACTTTTG	57.647	29.630	0.00	0.00	37.61	2.44
164	1678	7.389053	ACATTAACTCCAACTTCTTAGCTGAAG	59.611	37.037	11.28	11.28	46.33	3.02
214	1861	3.699067	CAAGTTTTGCTCAGACTTGGTG	58.301	45.455	14.84	0.00	43.94	4.17
220	1867	3.561725	AGCAGTACAAGTTTTGCTCAGAC	59.438	43.478	0.00	0.00	42.89	3.51
268	1915	4.880886	AAAGTTTGTGCAAGAAATTGGC	57.119	36.364	0.00	0.00	29.33	4.52
332	1985	5.598416	ATGTTGGAAGTATGATCACGAGA	57.402	39.130	0.00	0.00	0.00	4.04
407	2060	7.715249	GTGCCTATAATGATTGGAGTTAGTTCA	59.285	37.037	0.00	0.00	30.08	3.18
412	2065	5.610982	AGGGTGCCTATAATGATTGGAGTTA	59.389	40.000	0.00	0.00	30.08	2.24
569	2224	9.813080	GAAGTAACAGAGTTCAATAACATTCAC	57.187	33.333	0.00	0.00	37.43	3.18
605	2291	8.407064	TCGCAAAAAGGAATTTAGTTTGACTAA	58.593	29.630	0.00	0.00	38.79	2.24
655	2344	7.056635	ACATCTTATATTTGTGAACAGAGGGG	58.943	38.462	0.00	0.00	0.00	4.79
776	2476	5.491078	ACTCCCTCCTTTCACCAATACATTA	59.509	40.000	0.00	0.00	0.00	1.90
777	2477	4.292306	ACTCCCTCCTTTCACCAATACATT	59.708	41.667	0.00	0.00	0.00	2.71
778	2478	3.852578	ACTCCCTCCTTTCACCAATACAT	59.147	43.478	0.00	0.00	0.00	2.29
1783	3494	2.362369	CGTCTGGGTCCAGCATCCT	61.362	63.158	11.95	0.00	43.31	3.24
1805	3516	1.019673	ATCCATCTTGATGCGTGTGC	58.980	50.000	5.16	0.00	43.20	4.57
1809	3520	4.201657	TGATTTCATCCATCTTGATGCGT	58.798	39.130	5.16	0.00	41.54	5.24
1821	3532	1.959282	GGGTGCTCCATGATTTCATCC	59.041	52.381	7.20	0.00	33.61	3.51
1823	3534	3.028850	CAAGGGTGCTCCATGATTTCAT	58.971	45.455	7.20	0.00	38.24	2.57
1881	3595	1.398692	GATCAGAGGAAGGAGCTCGT	58.601	55.000	7.83	5.12	0.00	4.18
2051	3765	2.520465	ATCCAGCACCGACGCAATGA	62.520	55.000	0.00	0.00	0.00	2.57
2057	3771	1.883084	GCCTTATCCAGCACCGACG	60.883	63.158	0.00	0.00	0.00	5.12
2176	3893	4.628963	ACAAACGACTAACCCTAACCAT	57.371	40.909	0.00	0.00	0.00	3.55
2193	3910	7.286546	TCAACCATCAACATTTCCTCTAACAAA	59.713	33.333	0.00	0.00	0.00	2.83
2341	4060	6.624423	ACAATGCACTTCCATCACTAATTTC	58.376	36.000	0.00	0.00	0.00	2.17
2376	4110	8.602472	AAATTGCCTAATTTCCCAACATAGTA	57.398	30.769	0.00	0.00	41.43	1.82
2534	4271	1.446099	CAGTACGTGCGTCATGGCT	60.446	57.895	0.00	0.40	0.00	4.75
2535	4272	1.011968	TTCAGTACGTGCGTCATGGC	61.012	55.000	0.00	0.00	0.00	4.40
2568	4305	9.224267	CTCCTGCTGTGCATATACTTTATTAAT	57.776	33.333	0.00	0.00	38.13	1.40
2569	4306	8.210946	ACTCCTGCTGTGCATATACTTTATTAA	58.789	33.333	0.00	0.00	38.13	1.40
2570	4307	7.735917	ACTCCTGCTGTGCATATACTTTATTA	58.264	34.615	0.00	0.00	38.13	0.98
2571	4308	6.595682	ACTCCTGCTGTGCATATACTTTATT	58.404	36.000	0.00	0.00	38.13	1.40
2572	4309	6.179906	ACTCCTGCTGTGCATATACTTTAT	57.820	37.500	0.00	0.00	38.13	1.40
2605	4342	5.676552	AGTGTGTATGTGTGTGTAGGAAAA	58.323	37.500	0.00	0.00	0.00	2.29
2606	4343	5.284861	AGTGTGTATGTGTGTGTAGGAAA	57.715	39.130	0.00	0.00	0.00	3.13
2607	4344	4.948341	AGTGTGTATGTGTGTGTAGGAA	57.052	40.909	0.00	0.00	0.00	3.36
2608	4345	4.828387	TGTAGTGTGTATGTGTGTGTAGGA	59.172	41.667	0.00	0.00	0.00	2.94
2611	4348	5.777850	ACTGTAGTGTGTATGTGTGTGTA	57.222	39.130	0.00	0.00	0.00	2.90
2612	4349	4.665833	ACTGTAGTGTGTATGTGTGTGT	57.334	40.909	0.00	0.00	0.00	3.72
2614	4351	6.444633	GTCTAACTGTAGTGTGTATGTGTGT	58.555	40.000	0.00	0.00	0.00	3.72
2616	4353	5.047519	GGGTCTAACTGTAGTGTGTATGTGT	60.048	44.000	0.00	0.00	0.00	3.72
2617	4354	5.185249	AGGGTCTAACTGTAGTGTGTATGTG	59.815	44.000	0.00	0.00	0.00	3.21
2618	4355	5.331069	AGGGTCTAACTGTAGTGTGTATGT	58.669	41.667	0.00	0.00	0.00	2.29
2621	4361	4.005650	CGAGGGTCTAACTGTAGTGTGTA	58.994	47.826	0.00	0.00	0.00	2.90
2750	4499	2.521465	CCCAGCACCAAGGCACAA	60.521	61.111	0.00	0.00	35.83	3.33
2751	4500	3.496309	CTCCCAGCACCAAGGCACA	62.496	63.158	0.00	0.00	35.83	4.57
2752	4501	2.674380	CTCCCAGCACCAAGGCAC	60.674	66.667	0.00	0.00	35.83	5.01
2825	4574	0.105964	TGTGTTCAAGACCGTCTGGG	59.894	55.000	0.65	0.00	40.75	4.45
2828	4577	2.167693	TCTTGTGTGTTCAAGACCGTCT	59.832	45.455	0.00	0.00	45.62	4.18
2946	4697	1.301716	TTCTGTTGGCTCAGGCGTC	60.302	57.895	9.53	0.00	39.81	5.19
3058	4814	0.687354	AGATCACCTCACCGCAACTT	59.313	50.000	0.00	0.00	0.00	2.66
3079	4835	2.877097	TGGAGATTGCAAGTGGCTTA	57.123	45.000	4.94	0.00	45.15	3.09
3089	4845	4.508124	CGGTGTTATACTCTTGGAGATTGC	59.492	45.833	1.31	0.00	33.32	3.56
3113	4869	8.313944	TCTGTAAAATTGGACACCTATAGCTA	57.686	34.615	0.00	0.00	0.00	3.32
3142	4898	6.519382	CGCCTAAATATGTTATGGGAGGTGTA	60.519	42.308	0.00	0.00	0.00	2.90
3143	4899	5.631119	GCCTAAATATGTTATGGGAGGTGT	58.369	41.667	0.00	0.00	0.00	4.16
3162	4918	1.814394	ACAGTCGTTACATGTCGCCTA	59.186	47.619	0.00	0.00	0.00	3.93
3177	4933	6.431198	TCTTGTTTGGTTGTCTTAACAGTC	57.569	37.500	0.00	0.00	36.57	3.51
3229	4988	5.992217	ACTAGCGACTTGTCAAGATTCTTTT	59.008	36.000	19.53	0.00	0.00	2.27
3244	5006	8.251721	AGTAAGTAATTCAATGAACTAGCGACT	58.748	33.333	0.00	0.00	0.00	4.18
3272	5036	1.354368	ACTACCAGGGTTGTTGGGATG	59.646	52.381	0.00	0.00	40.11	3.51
3273	5037	1.354368	CACTACCAGGGTTGTTGGGAT	59.646	52.381	2.74	0.00	40.11	3.85

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.