Multiple sequence alignment - TraesCS2D01G537100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G537100 chr2D 100.000 5812 0 0 1 5812 619143980 619149791 0.000000e+00 10733.0
1 TraesCS2D01G537100 chr2D 81.462 383 55 14 205 583 313807595 313807965 3.400000e-77 300.0
2 TraesCS2D01G537100 chr2D 76.596 564 114 7 997 1557 586265518 586264970 1.580000e-75 294.0
3 TraesCS2D01G537100 chr2A 95.336 3066 118 12 2484 5541 750209826 750206778 0.000000e+00 4846.0
4 TraesCS2D01G537100 chr2A 93.189 1336 80 2 1007 2334 750224834 750223502 0.000000e+00 1953.0
5 TraesCS2D01G537100 chr2A 88.813 1618 127 26 661 2248 749968215 749969808 0.000000e+00 1936.0
6 TraesCS2D01G537100 chr2A 87.729 1035 47 22 1 961 750226048 750225020 0.000000e+00 1134.0
7 TraesCS2D01G537100 chr2A 92.732 743 50 4 3452 4192 749971808 749972548 0.000000e+00 1070.0
8 TraesCS2D01G537100 chr2A 89.100 789 71 7 2683 3467 749970255 749971032 0.000000e+00 966.0
9 TraesCS2D01G537100 chr2A 82.830 827 118 15 3448 4259 720574887 720574070 0.000000e+00 719.0
10 TraesCS2D01G537100 chr2A 85.687 524 58 8 4188 4709 750047414 750047922 2.380000e-148 536.0
11 TraesCS2D01G537100 chr2A 88.998 409 28 13 2239 2644 749969861 749970255 1.880000e-134 490.0
12 TraesCS2D01G537100 chr2A 80.886 429 73 8 2866 3289 720575938 720575514 4.340000e-86 329.0
13 TraesCS2D01G537100 chr2A 81.771 384 53 14 205 583 422780988 422781359 7.320000e-79 305.0
14 TraesCS2D01G537100 chr2A 81.510 384 53 14 205 583 422923647 422923277 3.400000e-77 300.0
15 TraesCS2D01G537100 chr2A 79.195 447 80 9 2849 3288 720225731 720225291 1.220000e-76 298.0
16 TraesCS2D01G537100 chr2A 97.959 98 2 0 2389 2486 750223497 750223400 2.780000e-38 171.0
17 TraesCS2D01G537100 chr2A 81.988 161 27 2 4707 4866 750232496 750232337 1.020000e-27 135.0
18 TraesCS2D01G537100 chr2B 93.295 2640 130 10 2909 5539 756636551 756639152 0.000000e+00 3851.0
19 TraesCS2D01G537100 chr2B 92.361 2147 135 15 3409 5541 756969075 756971206 0.000000e+00 3029.0
20 TraesCS2D01G537100 chr2B 89.127 2189 199 18 2683 4863 756705379 756707536 0.000000e+00 2687.0
21 TraesCS2D01G537100 chr2B 88.429 2273 187 49 426 2656 756966083 756968321 0.000000e+00 2671.0
22 TraesCS2D01G537100 chr2B 93.900 1672 89 7 995 2656 756634695 756636363 0.000000e+00 2510.0
23 TraesCS2D01G537100 chr2B 89.650 2000 154 35 661 2644 756703417 756705379 0.000000e+00 2497.0
24 TraesCS2D01G537100 chr2B 91.393 639 51 3 2683 3320 756968307 756968942 0.000000e+00 872.0
25 TraesCS2D01G537100 chr2B 83.558 815 106 13 3447 4255 707959877 707959085 0.000000e+00 737.0
26 TraesCS2D01G537100 chr2B 87.459 614 77 0 996 1609 757879870 757880483 0.000000e+00 708.0
27 TraesCS2D01G537100 chr2B 94.059 202 7 4 2683 2879 756636349 756636550 9.460000e-78 302.0
28 TraesCS2D01G537100 chr2B 83.721 258 39 1 3034 3288 707622103 707621846 2.090000e-59 241.0
29 TraesCS2D01G537100 chr2B 81.522 276 44 7 4469 4741 756623157 756623428 2.730000e-53 220.0
30 TraesCS2D01G537100 chr2B 82.833 233 28 7 4877 5109 756707601 756707821 1.280000e-46 198.0
31 TraesCS2D01G537100 chr2B 84.358 179 28 0 4509 4687 758798575 758798397 5.990000e-40 176.0
32 TraesCS2D01G537100 chr2B 80.822 219 42 0 4509 4727 758113281 758113499 7.740000e-39 172.0
33 TraesCS2D01G537100 chrUn 85.978 813 104 8 3450 4256 74781483 74782291 0.000000e+00 861.0
34 TraesCS2D01G537100 chrUn 79.577 142 22 7 239 378 456780116 456779980 1.720000e-15 95.3
35 TraesCS2D01G537100 chr6D 85.363 813 109 7 3455 4261 446621034 446620226 0.000000e+00 833.0
36 TraesCS2D01G537100 chr6D 96.337 273 8 2 5541 5812 54650362 54650091 1.150000e-121 448.0
37 TraesCS2D01G537100 chr6D 96.337 273 8 2 5541 5812 460136075 460135804 1.150000e-121 448.0
38 TraesCS2D01G537100 chr6D 94.964 278 10 3 5538 5812 440921839 440922115 3.220000e-117 433.0
39 TraesCS2D01G537100 chr6D 76.744 559 106 15 2747 3292 446622030 446621483 2.050000e-74 291.0
40 TraesCS2D01G537100 chr6D 75.325 231 48 8 1023 1250 467017838 467018062 1.030000e-17 102.0
41 TraesCS2D01G537100 chr6A 84.367 806 114 7 3448 4246 593437582 593436782 0.000000e+00 780.0
42 TraesCS2D01G537100 chr6A 77.308 520 114 4 1016 1533 593442529 593442012 2.630000e-78 303.0
43 TraesCS2D01G537100 chr3D 95.374 281 10 3 5533 5812 581429878 581429600 1.490000e-120 444.0
44 TraesCS2D01G537100 chr3D 95.588 272 10 2 5542 5812 404351196 404351466 8.940000e-118 435.0
45 TraesCS2D01G537100 chr5D 95.985 274 8 3 5540 5812 80267917 80268188 5.350000e-120 442.0
46 TraesCS2D01G537100 chr5D 96.296 270 7 3 5544 5812 454318413 454318146 1.920000e-119 440.0
47 TraesCS2D01G537100 chr1D 95.636 275 10 2 5539 5812 489167495 489167768 1.920000e-119 440.0
48 TraesCS2D01G537100 chr7D 95.588 272 10 2 5542 5812 301883849 301884119 8.940000e-118 435.0
49 TraesCS2D01G537100 chr7D 81.557 244 37 8 319 560 45757576 45757339 1.650000e-45 195.0
50 TraesCS2D01G537100 chr5B 81.570 293 45 9 210 496 307401274 307401563 3.500000e-57 233.0
51 TraesCS2D01G537100 chr5A 79.514 288 51 8 213 496 360074700 360074983 1.280000e-46 198.0
52 TraesCS2D01G537100 chr7B 80.488 205 30 8 309 510 726848107 726848304 1.300000e-31 148.0
53 TraesCS2D01G537100 chr3A 76.842 285 52 12 219 494 620758811 620759090 1.300000e-31 148.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G537100 chr2D 619143980 619149791 5811 False 10733.000000 10733 100.000000 1 5812 1 chr2D.!!$F2 5811
1 TraesCS2D01G537100 chr2D 586264970 586265518 548 True 294.000000 294 76.596000 997 1557 1 chr2D.!!$R1 560
2 TraesCS2D01G537100 chr2A 750206778 750209826 3048 True 4846.000000 4846 95.336000 2484 5541 1 chr2A.!!$R3 3057
3 TraesCS2D01G537100 chr2A 749968215 749972548 4333 False 1115.500000 1936 89.910750 661 4192 4 chr2A.!!$F3 3531
4 TraesCS2D01G537100 chr2A 750223400 750226048 2648 True 1086.000000 1953 92.959000 1 2486 3 chr2A.!!$R6 2485
5 TraesCS2D01G537100 chr2A 750047414 750047922 508 False 536.000000 536 85.687000 4188 4709 1 chr2A.!!$F2 521
6 TraesCS2D01G537100 chr2A 720574070 720575938 1868 True 524.000000 719 81.858000 2866 4259 2 chr2A.!!$R5 1393
7 TraesCS2D01G537100 chr2B 756634695 756639152 4457 False 2221.000000 3851 93.751333 995 5539 3 chr2B.!!$F4 4544
8 TraesCS2D01G537100 chr2B 756966083 756971206 5123 False 2190.666667 3029 90.727667 426 5541 3 chr2B.!!$F6 5115
9 TraesCS2D01G537100 chr2B 756703417 756707821 4404 False 1794.000000 2687 87.203333 661 5109 3 chr2B.!!$F5 4448
10 TraesCS2D01G537100 chr2B 707959085 707959877 792 True 737.000000 737 83.558000 3447 4255 1 chr2B.!!$R2 808
11 TraesCS2D01G537100 chr2B 757879870 757880483 613 False 708.000000 708 87.459000 996 1609 1 chr2B.!!$F2 613
12 TraesCS2D01G537100 chrUn 74781483 74782291 808 False 861.000000 861 85.978000 3450 4256 1 chrUn.!!$F1 806
13 TraesCS2D01G537100 chr6D 446620226 446622030 1804 True 562.000000 833 81.053500 2747 4261 2 chr6D.!!$R3 1514
14 TraesCS2D01G537100 chr6A 593436782 593437582 800 True 780.000000 780 84.367000 3448 4246 1 chr6A.!!$R1 798
15 TraesCS2D01G537100 chr6A 593442012 593442529 517 True 303.000000 303 77.308000 1016 1533 1 chr6A.!!$R2 517

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
908 978 0.039180 TAGTCTGTTCTGCCCTCCGA 59.961 55.000 0.00 0.0 0.00 4.55 F
1584 1822 0.179000 GCGACACAAGATCCCCAGAT 59.821 55.000 0.00 0.0 34.57 2.90 F
2003 2257 0.961019 AAAGAAGCGCTGAAATGCCA 59.039 45.000 12.58 0.0 0.00 4.92 F
2671 2996 2.159382 GAAGGAGAATTTTCACCCGCA 58.841 47.619 3.52 0.0 38.52 5.69 F
2672 2997 2.286365 AGGAGAATTTTCACCCGCAA 57.714 45.000 3.52 0.0 38.52 4.85 F
3832 5594 2.437651 AGGAATAGCAAGAGGCCTTCTC 59.562 50.000 6.77 0.0 46.50 2.87 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1814 2060 0.592754 GACTATCCACGACGCAGAGC 60.593 60.000 0.00 0.0 0.00 4.09 R
2898 3268 1.202222 GCAGAAATGCGTCCAATCAGG 60.202 52.381 0.00 0.0 39.47 3.86 R
3095 3476 1.631405 TTCCCCATTTGCCTGTTGAG 58.369 50.000 0.00 0.0 0.00 3.02 R
4498 6266 0.465097 CCAGGCCTGACCAATAGCAG 60.465 60.000 34.91 9.2 43.14 4.24 R
4773 6541 5.003778 GCGTTGTCATACTCATTTCATTTGC 59.996 40.000 0.00 0.0 0.00 3.68 R
5639 7467 0.108945 GCCATCAGCCAGTTCTTTGC 60.109 55.000 0.00 0.0 34.35 3.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 2.670229 CGTCTAGTTTGCCGTTCTAGCA 60.670 50.000 0.00 0.00 38.81 3.49
58 59 5.163602 CCGTTCTAGCACTCTTCTATGAGTT 60.164 44.000 0.00 0.00 44.01 3.01
93 94 2.655001 GCGCGTTTTACCTTTGCTTTAG 59.345 45.455 8.43 0.00 0.00 1.85
97 98 4.743151 GCGTTTTACCTTTGCTTTAGCTTT 59.257 37.500 0.00 0.00 42.66 3.51
129 130 2.380084 TGCGTGGTCTCCAATAACTC 57.620 50.000 0.00 0.00 34.18 3.01
136 137 5.282510 GTGGTCTCCAATAACTCTATGTCG 58.717 45.833 0.00 0.00 34.18 4.35
141 142 7.306953 GTCTCCAATAACTCTATGTCGGTATC 58.693 42.308 0.00 0.00 0.00 2.24
156 157 0.383231 GTATCATGGCTGTTGCTGGC 59.617 55.000 0.00 0.00 39.59 4.85
171 172 8.716909 GCTGTTGCTGGCTTTATTAATTTAAAA 58.283 29.630 0.00 0.00 36.03 1.52
176 177 7.223777 TGCTGGCTTTATTAATTTAAAATCGGC 59.776 33.333 0.00 2.45 32.22 5.54
294 321 5.116180 ACACGCATGTATAGCAATGTAGTT 58.884 37.500 0.00 0.00 37.26 2.24
295 322 5.584649 ACACGCATGTATAGCAATGTAGTTT 59.415 36.000 0.00 0.00 37.26 2.66
296 323 6.759356 ACACGCATGTATAGCAATGTAGTTTA 59.241 34.615 0.00 0.00 37.26 2.01
297 324 7.441157 ACACGCATGTATAGCAATGTAGTTTAT 59.559 33.333 0.00 0.00 37.26 1.40
298 325 7.952101 CACGCATGTATAGCAATGTAGTTTATC 59.048 37.037 0.00 0.00 0.00 1.75
299 326 7.148804 ACGCATGTATAGCAATGTAGTTTATCG 60.149 37.037 0.00 0.00 0.00 2.92
300 327 7.456253 GCATGTATAGCAATGTAGTTTATCGG 58.544 38.462 0.00 0.00 0.00 4.18
301 328 7.413000 GCATGTATAGCAATGTAGTTTATCGGG 60.413 40.741 0.00 0.00 0.00 5.14
302 329 7.292713 TGTATAGCAATGTAGTTTATCGGGA 57.707 36.000 0.00 0.00 0.00 5.14
303 330 7.728148 TGTATAGCAATGTAGTTTATCGGGAA 58.272 34.615 0.00 0.00 0.00 3.97
304 331 8.205512 TGTATAGCAATGTAGTTTATCGGGAAA 58.794 33.333 0.00 0.00 0.00 3.13
305 332 9.048446 GTATAGCAATGTAGTTTATCGGGAAAA 57.952 33.333 0.00 0.00 0.00 2.29
306 333 6.827586 AGCAATGTAGTTTATCGGGAAAAA 57.172 33.333 0.00 0.00 0.00 1.94
318 348 9.971744 GTTTATCGGGAAAAATTTTCATCAATG 57.028 29.630 18.70 3.48 0.00 2.82
342 372 2.283617 CGTGCTTGCATGTGAGAGATAC 59.716 50.000 6.65 0.00 0.00 2.24
347 377 5.241285 TGCTTGCATGTGAGAGATACAAAAA 59.759 36.000 1.14 0.00 0.00 1.94
397 431 2.246719 TTTTGTTGATTTTGGGGCCG 57.753 45.000 0.00 0.00 0.00 6.13
410 444 1.037493 GGGGCCGAAACTTTGTCTTT 58.963 50.000 0.00 0.00 0.00 2.52
484 518 5.528690 ACTTAGATCACATGCATGCGTATTT 59.471 36.000 26.53 14.08 0.00 1.40
586 621 2.096417 CACCAAAAGTCCGCTTTACTCG 60.096 50.000 0.00 0.00 43.52 4.18
627 662 1.154263 GAGTCTCTGCGTACGCGTT 60.154 57.895 32.65 15.37 45.51 4.84
648 703 5.355596 GTTCACACCTCTGGAGATATTCAG 58.644 45.833 0.00 0.00 0.00 3.02
650 705 3.387374 CACACCTCTGGAGATATTCAGCT 59.613 47.826 0.00 0.00 0.00 4.24
680 735 3.555956 CCGTAATTAGTACTGCAGCAAGG 59.444 47.826 15.27 0.00 0.00 3.61
715 776 1.646912 TACGTTTCCCCTGTCATCCA 58.353 50.000 0.00 0.00 0.00 3.41
835 896 3.056821 GTCGTCTGGCCATATGTGCTATA 60.057 47.826 5.51 1.37 0.00 1.31
837 898 4.953579 TCGTCTGGCCATATGTGCTATATA 59.046 41.667 5.51 0.00 0.00 0.86
838 899 5.598417 TCGTCTGGCCATATGTGCTATATAT 59.402 40.000 5.51 0.00 0.00 0.86
896 966 9.823647 CATCTATACCAAAGATGTTTAGTCTGT 57.176 33.333 5.17 0.00 43.50 3.41
902 972 5.335191 CCAAAGATGTTTAGTCTGTTCTGCC 60.335 44.000 0.00 0.00 0.00 4.85
906 976 2.038557 TGTTTAGTCTGTTCTGCCCTCC 59.961 50.000 0.00 0.00 0.00 4.30
907 977 0.895530 TTAGTCTGTTCTGCCCTCCG 59.104 55.000 0.00 0.00 0.00 4.63
908 978 0.039180 TAGTCTGTTCTGCCCTCCGA 59.961 55.000 0.00 0.00 0.00 4.55
909 979 0.616111 AGTCTGTTCTGCCCTCCGAT 60.616 55.000 0.00 0.00 0.00 4.18
927 1014 4.402474 TCCGATCCTGTGCTATATATGGTG 59.598 45.833 0.00 0.00 0.00 4.17
961 1177 8.458843 ACCTTGATGTTTTTATCCTTATCAACG 58.541 33.333 0.00 0.00 32.83 4.10
978 1194 4.312443 TCAACGAGTTCCATTAGTTCCAC 58.688 43.478 0.00 0.00 0.00 4.02
1021 1257 0.538287 GGCCATGCTCTACATTCCCC 60.538 60.000 0.00 0.00 36.64 4.81
1132 1368 0.245539 CGAGAACGGGGTCTTTGCTA 59.754 55.000 0.00 0.00 35.72 3.49
1146 1382 5.397334 GGTCTTTGCTATGGGATTCTTCTCT 60.397 44.000 0.00 0.00 0.00 3.10
1584 1822 0.179000 GCGACACAAGATCCCCAGAT 59.821 55.000 0.00 0.00 34.57 2.90
1971 2225 7.537991 CCTGTCGACAGTAGTAACTCTTTTAAG 59.462 40.741 36.37 16.13 42.27 1.85
2003 2257 0.961019 AAAGAAGCGCTGAAATGCCA 59.039 45.000 12.58 0.00 0.00 4.92
2266 2585 2.447408 TGCCGACTCTCCTGGTATTA 57.553 50.000 0.00 0.00 0.00 0.98
2482 2805 9.406828 GTTTTAGAAGTTCCATATCCAAAACAC 57.593 33.333 0.00 0.00 34.88 3.32
2517 2842 6.174049 AGAACTGGAAGGAGTACATAAAAGC 58.826 40.000 0.00 0.00 39.30 3.51
2596 2921 5.705905 GCTAGGTTGTTCAATTACTTCTGGT 59.294 40.000 0.00 0.00 0.00 4.00
2632 2957 9.185192 CAAATTCAACTACAATTCTTTCCAGAC 57.815 33.333 0.00 0.00 0.00 3.51
2651 2976 4.130286 GACTCCATGTCTTAGTTCCCAG 57.870 50.000 0.00 0.00 42.21 4.45
2652 2977 3.769844 GACTCCATGTCTTAGTTCCCAGA 59.230 47.826 0.00 0.00 42.21 3.86
2653 2978 4.168101 ACTCCATGTCTTAGTTCCCAGAA 58.832 43.478 0.00 0.00 0.00 3.02
2654 2979 4.223923 ACTCCATGTCTTAGTTCCCAGAAG 59.776 45.833 0.00 0.00 0.00 2.85
2655 2980 3.519510 TCCATGTCTTAGTTCCCAGAAGG 59.480 47.826 0.00 0.00 0.00 3.46
2656 2981 3.519510 CCATGTCTTAGTTCCCAGAAGGA 59.480 47.826 0.00 0.00 45.68 3.36
2667 2992 4.034285 TCCCAGAAGGAGAATTTTCACC 57.966 45.455 0.00 0.00 40.93 4.02
2668 2993 3.092301 CCCAGAAGGAGAATTTTCACCC 58.908 50.000 3.52 0.00 38.52 4.61
2669 2994 2.749621 CCAGAAGGAGAATTTTCACCCG 59.250 50.000 3.52 0.00 38.52 5.28
2670 2995 2.162408 CAGAAGGAGAATTTTCACCCGC 59.838 50.000 3.52 0.00 38.52 6.13
2671 2996 2.159382 GAAGGAGAATTTTCACCCGCA 58.841 47.619 3.52 0.00 38.52 5.69
2672 2997 2.286365 AGGAGAATTTTCACCCGCAA 57.714 45.000 3.52 0.00 38.52 4.85
2673 2998 2.593026 AGGAGAATTTTCACCCGCAAA 58.407 42.857 3.52 0.00 38.52 3.68
2674 2999 2.962421 AGGAGAATTTTCACCCGCAAAA 59.038 40.909 3.52 0.00 38.52 2.44
2675 3000 3.386402 AGGAGAATTTTCACCCGCAAAAA 59.614 39.130 3.52 0.00 38.52 1.94
2960 3331 4.224370 TCCAGTAAAGATTGTACTCCCCAC 59.776 45.833 0.00 0.00 29.12 4.61
2980 3351 6.609212 CCCCACTATATCATGTCTGCTACTAT 59.391 42.308 0.00 0.00 0.00 2.12
3095 3476 4.302559 AGAAAAAGGGTGGATGTCCTAC 57.697 45.455 0.09 0.00 36.82 3.18
3371 4244 2.493278 CTCGGGCTCAATTGGAAAACAT 59.507 45.455 5.42 0.00 0.00 2.71
3832 5594 2.437651 AGGAATAGCAAGAGGCCTTCTC 59.562 50.000 6.77 0.00 46.50 2.87
3982 5744 2.779755 ATCATGCTAACACAACCCGA 57.220 45.000 0.00 0.00 0.00 5.14
4691 6459 8.621532 TGTTTATGTTAGAGAATGAAAGTGCT 57.378 30.769 0.00 0.00 0.00 4.40
4772 6540 1.289160 CCAGGGAGGGAATGAGTTCA 58.711 55.000 0.00 0.00 36.01 3.18
4773 6541 1.211457 CCAGGGAGGGAATGAGTTCAG 59.789 57.143 0.00 0.00 36.01 3.02
4826 6594 4.264380 GGTCGTTAGTTTTTGCACAACTTG 59.736 41.667 14.24 6.89 35.95 3.16
4867 6635 1.053264 CATCAGGGGTGGAGCTAGCT 61.053 60.000 19.45 19.45 0.00 3.32
4951 6770 1.130777 AGCATTTGTTTTGGCTGGGT 58.869 45.000 0.00 0.00 34.83 4.51
4953 6772 1.070601 GCATTTGTTTTGGCTGGGTCT 59.929 47.619 0.00 0.00 0.00 3.85
5057 6877 7.767659 TGCGAGTCTATTGTACTAGAAGAGTTA 59.232 37.037 0.00 0.00 39.81 2.24
5144 6964 1.990563 CTCGATGTCCAACCACGTAAC 59.009 52.381 0.00 0.00 0.00 2.50
5222 7050 2.167693 TGACTATCACGCCCTTCGATTT 59.832 45.455 0.00 0.00 41.67 2.17
5273 7101 5.123344 TCAGAATGCACTTCATCATTCACAG 59.877 40.000 14.79 6.69 46.61 3.66
5348 7176 3.384467 CCAAAAGTCAAAGGAGCCTTCAA 59.616 43.478 1.62 0.00 34.84 2.69
5388 7216 4.410883 TGTTTTTCTCAGGGGTACTCTGAA 59.589 41.667 16.17 4.63 40.29 3.02
5389 7217 5.073144 TGTTTTTCTCAGGGGTACTCTGAAT 59.927 40.000 16.17 0.00 40.29 2.57
5390 7218 5.422214 TTTTCTCAGGGGTACTCTGAATC 57.578 43.478 16.17 0.00 40.29 2.52
5391 7219 4.338795 TTCTCAGGGGTACTCTGAATCT 57.661 45.455 16.17 0.00 40.29 2.40
5392 7220 3.904717 TCTCAGGGGTACTCTGAATCTC 58.095 50.000 16.17 0.00 40.29 2.75
5393 7221 3.529734 TCTCAGGGGTACTCTGAATCTCT 59.470 47.826 16.17 0.00 40.29 3.10
5394 7222 3.636300 CTCAGGGGTACTCTGAATCTCTG 59.364 52.174 16.17 4.35 40.29 3.35
5395 7223 3.269643 TCAGGGGTACTCTGAATCTCTGA 59.730 47.826 14.10 4.70 38.20 3.27
5443 7271 3.055094 TGGACTATTTGCTGAGAACTCCC 60.055 47.826 0.00 0.00 0.00 4.30
5454 7282 2.906389 TGAGAACTCCCTTACATGCTGT 59.094 45.455 0.00 0.00 0.00 4.40
5481 7309 6.414732 CAATGGGAGTGATTCTAGTAACCAA 58.585 40.000 0.00 0.00 0.00 3.67
5527 7355 0.187117 TTGGGGTGGAAGATGTGCAA 59.813 50.000 0.00 0.00 0.00 4.08
5542 7370 3.332761 GTGCAACGAGTTGAACATTCA 57.667 42.857 19.25 5.21 46.09 2.57
5543 7371 3.035942 GTGCAACGAGTTGAACATTCAC 58.964 45.455 19.25 12.36 46.09 3.18
5544 7372 2.942376 TGCAACGAGTTGAACATTCACT 59.058 40.909 18.93 0.00 42.93 3.41
5545 7373 4.025229 GTGCAACGAGTTGAACATTCACTA 60.025 41.667 19.25 0.00 46.09 2.74
5546 7374 4.025229 TGCAACGAGTTGAACATTCACTAC 60.025 41.667 18.93 0.00 42.93 2.73
5547 7375 4.211374 GCAACGAGTTGAACATTCACTACT 59.789 41.667 18.93 0.00 42.93 2.57
5548 7376 5.670097 CAACGAGTTGAACATTCACTACTG 58.330 41.667 10.19 1.24 42.93 2.74
5549 7377 4.307432 ACGAGTTGAACATTCACTACTGG 58.693 43.478 0.00 5.61 36.83 4.00
5550 7378 4.038763 ACGAGTTGAACATTCACTACTGGA 59.961 41.667 12.61 0.00 36.83 3.86
5551 7379 4.988540 CGAGTTGAACATTCACTACTGGAA 59.011 41.667 0.00 0.00 36.83 3.53
5552 7380 5.639506 CGAGTTGAACATTCACTACTGGAAT 59.360 40.000 0.00 0.00 36.83 3.01
5553 7381 6.147821 CGAGTTGAACATTCACTACTGGAATT 59.852 38.462 0.00 0.00 36.83 2.17
5554 7382 7.307989 CGAGTTGAACATTCACTACTGGAATTT 60.308 37.037 0.00 0.00 36.83 1.82
5555 7383 7.651808 AGTTGAACATTCACTACTGGAATTTG 58.348 34.615 0.00 0.00 36.83 2.32
5556 7384 6.012658 TGAACATTCACTACTGGAATTTGC 57.987 37.500 0.00 0.00 32.86 3.68
5557 7385 5.769662 TGAACATTCACTACTGGAATTTGCT 59.230 36.000 0.00 0.00 32.86 3.91
5558 7386 6.265196 TGAACATTCACTACTGGAATTTGCTT 59.735 34.615 0.00 0.00 32.86 3.91
5559 7387 7.446931 TGAACATTCACTACTGGAATTTGCTTA 59.553 33.333 0.00 0.00 32.86 3.09
5560 7388 7.944729 ACATTCACTACTGGAATTTGCTTAT 57.055 32.000 0.00 0.00 32.86 1.73
5561 7389 8.353423 ACATTCACTACTGGAATTTGCTTATT 57.647 30.769 0.00 0.00 32.86 1.40
5562 7390 8.806146 ACATTCACTACTGGAATTTGCTTATTT 58.194 29.630 0.00 0.00 32.86 1.40
5563 7391 9.079833 CATTCACTACTGGAATTTGCTTATTTG 57.920 33.333 0.00 0.00 32.86 2.32
5564 7392 6.620678 TCACTACTGGAATTTGCTTATTTGC 58.379 36.000 0.00 0.00 0.00 3.68
5565 7393 5.807011 CACTACTGGAATTTGCTTATTTGCC 59.193 40.000 0.00 0.00 0.00 4.52
5566 7394 3.848726 ACTGGAATTTGCTTATTTGCCG 58.151 40.909 0.00 0.00 0.00 5.69
5567 7395 3.258123 ACTGGAATTTGCTTATTTGCCGT 59.742 39.130 0.00 0.00 0.00 5.68
5568 7396 3.843999 TGGAATTTGCTTATTTGCCGTC 58.156 40.909 0.00 0.00 0.00 4.79
5569 7397 3.509575 TGGAATTTGCTTATTTGCCGTCT 59.490 39.130 0.00 0.00 0.00 4.18
5570 7398 3.859386 GGAATTTGCTTATTTGCCGTCTG 59.141 43.478 0.00 0.00 0.00 3.51
5571 7399 2.346099 TTTGCTTATTTGCCGTCTGC 57.654 45.000 0.00 0.00 41.77 4.26
5572 7400 0.525761 TTGCTTATTTGCCGTCTGCC 59.474 50.000 0.00 0.00 40.16 4.85
5573 7401 0.322456 TGCTTATTTGCCGTCTGCCT 60.322 50.000 0.00 0.00 40.16 4.75
5574 7402 1.065782 TGCTTATTTGCCGTCTGCCTA 60.066 47.619 0.00 0.00 40.16 3.93
5575 7403 2.222027 GCTTATTTGCCGTCTGCCTAT 58.778 47.619 0.00 0.00 40.16 2.57
5576 7404 2.618709 GCTTATTTGCCGTCTGCCTATT 59.381 45.455 0.00 0.00 40.16 1.73
5577 7405 3.304057 GCTTATTTGCCGTCTGCCTATTC 60.304 47.826 0.00 0.00 40.16 1.75
5578 7406 2.717639 ATTTGCCGTCTGCCTATTCT 57.282 45.000 0.00 0.00 40.16 2.40
5579 7407 2.489938 TTTGCCGTCTGCCTATTCTT 57.510 45.000 0.00 0.00 40.16 2.52
5580 7408 2.489938 TTGCCGTCTGCCTATTCTTT 57.510 45.000 0.00 0.00 40.16 2.52
5581 7409 1.737838 TGCCGTCTGCCTATTCTTTG 58.262 50.000 0.00 0.00 40.16 2.77
5582 7410 0.378610 GCCGTCTGCCTATTCTTTGC 59.621 55.000 0.00 0.00 0.00 3.68
5583 7411 1.017387 CCGTCTGCCTATTCTTTGCC 58.983 55.000 0.00 0.00 0.00 4.52
5584 7412 0.652592 CGTCTGCCTATTCTTTGCCG 59.347 55.000 0.00 0.00 0.00 5.69
5585 7413 1.739067 GTCTGCCTATTCTTTGCCGT 58.261 50.000 0.00 0.00 0.00 5.68
5586 7414 1.666189 GTCTGCCTATTCTTTGCCGTC 59.334 52.381 0.00 0.00 0.00 4.79
5587 7415 1.555075 TCTGCCTATTCTTTGCCGTCT 59.445 47.619 0.00 0.00 0.00 4.18
5588 7416 1.667724 CTGCCTATTCTTTGCCGTCTG 59.332 52.381 0.00 0.00 0.00 3.51
5589 7417 0.378610 GCCTATTCTTTGCCGTCTGC 59.621 55.000 0.00 0.00 41.77 4.26
5590 7418 2.014068 GCCTATTCTTTGCCGTCTGCT 61.014 52.381 0.00 0.00 42.00 4.24
5591 7419 1.667724 CCTATTCTTTGCCGTCTGCTG 59.332 52.381 0.00 0.00 42.00 4.41
5592 7420 1.667724 CTATTCTTTGCCGTCTGCTGG 59.332 52.381 0.00 0.00 42.00 4.85
5601 7429 4.357947 GTCTGCTGGCGGACGACA 62.358 66.667 17.09 0.00 41.68 4.35
5602 7430 3.611674 TCTGCTGGCGGACGACAA 61.612 61.111 0.55 0.00 29.81 3.18
5603 7431 2.664851 CTGCTGGCGGACGACAAA 60.665 61.111 0.55 0.00 29.81 2.83
5604 7432 2.664851 TGCTGGCGGACGACAAAG 60.665 61.111 0.55 0.00 29.81 2.77
5605 7433 2.357034 GCTGGCGGACGACAAAGA 60.357 61.111 0.55 0.00 29.81 2.52
5606 7434 1.959226 GCTGGCGGACGACAAAGAA 60.959 57.895 0.55 0.00 29.81 2.52
5607 7435 1.901650 GCTGGCGGACGACAAAGAAG 61.902 60.000 0.55 0.00 29.81 2.85
5608 7436 1.291877 CTGGCGGACGACAAAGAAGG 61.292 60.000 0.55 0.00 29.81 3.46
5609 7437 1.301479 GGCGGACGACAAAGAAGGT 60.301 57.895 0.00 0.00 0.00 3.50
5610 7438 1.289800 GGCGGACGACAAAGAAGGTC 61.290 60.000 0.00 0.00 0.00 3.85
5611 7439 0.319641 GCGGACGACAAAGAAGGTCT 60.320 55.000 0.00 0.00 33.11 3.85
5612 7440 1.872653 GCGGACGACAAAGAAGGTCTT 60.873 52.381 0.00 0.00 38.59 3.01
5613 7441 2.480845 CGGACGACAAAGAAGGTCTTT 58.519 47.619 0.00 0.00 46.75 2.52
5619 7447 2.341452 AAAGAAGGTCTTTGCCGCC 58.659 52.632 2.50 0.00 44.34 6.13
5620 7448 0.467290 AAAGAAGGTCTTTGCCGCCA 60.467 50.000 2.50 0.00 44.34 5.69
5621 7449 0.890996 AAGAAGGTCTTTGCCGCCAG 60.891 55.000 0.00 0.00 31.57 4.85
5622 7450 2.982744 GAAGGTCTTTGCCGCCAGC 61.983 63.158 0.00 0.00 44.14 4.85
5623 7451 3.497884 AAGGTCTTTGCCGCCAGCT 62.498 57.895 0.00 0.00 44.23 4.24
5624 7452 2.983725 AAGGTCTTTGCCGCCAGCTT 62.984 55.000 0.00 0.00 44.23 3.74
5625 7453 2.256461 GTCTTTGCCGCCAGCTTG 59.744 61.111 0.00 0.00 44.23 4.01
5626 7454 2.203337 TCTTTGCCGCCAGCTTGT 60.203 55.556 0.00 0.00 44.23 3.16
5627 7455 1.072332 TCTTTGCCGCCAGCTTGTA 59.928 52.632 0.00 0.00 44.23 2.41
5628 7456 0.536233 TCTTTGCCGCCAGCTTGTAA 60.536 50.000 0.00 0.00 44.23 2.41
5629 7457 0.313672 CTTTGCCGCCAGCTTGTAAA 59.686 50.000 0.00 0.00 44.23 2.01
5630 7458 0.747255 TTTGCCGCCAGCTTGTAAAA 59.253 45.000 0.00 0.00 44.23 1.52
5631 7459 0.747255 TTGCCGCCAGCTTGTAAAAA 59.253 45.000 0.00 0.00 44.23 1.94
5649 7477 3.369546 AAAATGGACGGCAAAGAACTG 57.630 42.857 0.00 0.00 0.00 3.16
5650 7478 1.247567 AATGGACGGCAAAGAACTGG 58.752 50.000 0.00 0.00 0.00 4.00
5651 7479 1.244019 ATGGACGGCAAAGAACTGGC 61.244 55.000 0.00 0.00 38.47 4.85
5652 7480 1.600916 GGACGGCAAAGAACTGGCT 60.601 57.895 0.00 0.00 39.65 4.75
5653 7481 1.576421 GACGGCAAAGAACTGGCTG 59.424 57.895 0.00 0.00 39.65 4.85
5654 7482 0.884704 GACGGCAAAGAACTGGCTGA 60.885 55.000 12.30 0.00 39.65 4.26
5655 7483 0.250901 ACGGCAAAGAACTGGCTGAT 60.251 50.000 12.30 0.00 39.65 2.90
5656 7484 0.169672 CGGCAAAGAACTGGCTGATG 59.830 55.000 0.00 0.00 39.65 3.07
5657 7485 0.529378 GGCAAAGAACTGGCTGATGG 59.471 55.000 0.00 0.00 38.77 3.51
5658 7486 0.108945 GCAAAGAACTGGCTGATGGC 60.109 55.000 0.00 0.00 40.90 4.40
5659 7487 1.250328 CAAAGAACTGGCTGATGGCA 58.750 50.000 0.00 0.00 46.87 4.92
5666 7494 3.675995 TGGCTGATGGCAAAGACAT 57.324 47.368 5.06 0.00 46.03 3.06
5667 7495 1.927487 TGGCTGATGGCAAAGACATT 58.073 45.000 5.06 0.00 46.03 2.71
5668 7496 1.820519 TGGCTGATGGCAAAGACATTC 59.179 47.619 5.06 0.00 46.03 2.67
5669 7497 2.097825 GGCTGATGGCAAAGACATTCT 58.902 47.619 4.85 0.00 44.01 2.40
5670 7498 2.494870 GGCTGATGGCAAAGACATTCTT 59.505 45.455 4.85 0.00 44.01 2.52
5671 7499 3.056322 GGCTGATGGCAAAGACATTCTTT 60.056 43.478 4.85 0.00 46.75 2.52
5680 7508 3.863142 AAGACATTCTTTGCCATCAGC 57.137 42.857 0.00 0.00 44.14 4.26
5681 7509 2.097825 AGACATTCTTTGCCATCAGCC 58.902 47.619 0.00 0.00 42.71 4.85
5682 7510 1.820519 GACATTCTTTGCCATCAGCCA 59.179 47.619 0.00 0.00 42.71 4.75
5683 7511 2.231964 GACATTCTTTGCCATCAGCCAA 59.768 45.455 0.00 0.00 42.71 4.52
5684 7512 2.835764 ACATTCTTTGCCATCAGCCAAT 59.164 40.909 0.00 0.00 42.71 3.16
5685 7513 3.262405 ACATTCTTTGCCATCAGCCAATT 59.738 39.130 0.00 0.00 42.71 2.32
5686 7514 3.598019 TTCTTTGCCATCAGCCAATTC 57.402 42.857 0.00 0.00 42.71 2.17
5687 7515 2.811410 TCTTTGCCATCAGCCAATTCT 58.189 42.857 0.00 0.00 42.71 2.40
5688 7516 3.167485 TCTTTGCCATCAGCCAATTCTT 58.833 40.909 0.00 0.00 42.71 2.52
5689 7517 3.579586 TCTTTGCCATCAGCCAATTCTTT 59.420 39.130 0.00 0.00 42.71 2.52
5690 7518 3.322211 TTGCCATCAGCCAATTCTTTG 57.678 42.857 0.00 0.00 42.71 2.77
5691 7519 1.066716 TGCCATCAGCCAATTCTTTGC 60.067 47.619 0.00 0.00 42.71 3.68
5692 7520 1.741394 GCCATCAGCCAATTCTTTGCC 60.741 52.381 0.00 0.00 34.35 4.52
5693 7521 1.470285 CCATCAGCCAATTCTTTGCCG 60.470 52.381 0.00 0.00 0.00 5.69
5694 7522 1.203052 CATCAGCCAATTCTTTGCCGT 59.797 47.619 0.00 0.00 0.00 5.68
5695 7523 0.881118 TCAGCCAATTCTTTGCCGTC 59.119 50.000 0.00 0.00 0.00 4.79
5696 7524 0.883833 CAGCCAATTCTTTGCCGTCT 59.116 50.000 0.00 0.00 0.00 4.18
5697 7525 0.883833 AGCCAATTCTTTGCCGTCTG 59.116 50.000 0.00 0.00 0.00 3.51
5698 7526 0.733909 GCCAATTCTTTGCCGTCTGC 60.734 55.000 0.00 0.00 41.77 4.26
5699 7527 0.883833 CCAATTCTTTGCCGTCTGCT 59.116 50.000 0.00 0.00 42.00 4.24
5700 7528 1.401931 CCAATTCTTTGCCGTCTGCTG 60.402 52.381 0.00 0.00 42.00 4.41
5701 7529 0.883833 AATTCTTTGCCGTCTGCTGG 59.116 50.000 0.00 0.00 42.00 4.85
5717 7545 2.791927 GGCGGACGGCAAAGAATC 59.208 61.111 13.57 0.00 46.16 2.52
5718 7546 1.745489 GGCGGACGGCAAAGAATCT 60.745 57.895 13.57 0.00 46.16 2.40
5719 7547 1.305930 GGCGGACGGCAAAGAATCTT 61.306 55.000 13.57 0.00 46.16 2.40
5720 7548 0.521735 GCGGACGGCAAAGAATCTTT 59.478 50.000 1.80 1.80 42.87 2.52
5721 7549 1.729149 GCGGACGGCAAAGAATCTTTG 60.729 52.381 26.46 26.46 42.87 2.77
5727 7555 2.704725 GCAAAGAATCTTTGCCGTCA 57.295 45.000 37.13 0.00 46.51 4.35
5728 7556 2.589014 GCAAAGAATCTTTGCCGTCAG 58.411 47.619 37.13 14.14 46.51 3.51
5729 7557 2.589014 CAAAGAATCTTTGCCGTCAGC 58.411 47.619 20.94 0.00 44.14 4.26
5730 7558 2.191128 AAGAATCTTTGCCGTCAGCT 57.809 45.000 0.00 0.00 44.23 4.24
5731 7559 1.446907 AGAATCTTTGCCGTCAGCTG 58.553 50.000 7.63 7.63 44.23 4.24
5732 7560 0.449388 GAATCTTTGCCGTCAGCTGG 59.551 55.000 15.13 0.00 44.23 4.85
5748 7576 2.815647 GGCGGACGGCAAAGAGAG 60.816 66.667 13.57 0.00 46.16 3.20
5749 7577 2.261671 GCGGACGGCAAAGAGAGA 59.738 61.111 0.00 0.00 42.87 3.10
5750 7578 1.807573 GCGGACGGCAAAGAGAGAG 60.808 63.158 0.00 0.00 42.87 3.20
5751 7579 1.153745 CGGACGGCAAAGAGAGAGG 60.154 63.158 0.00 0.00 0.00 3.69
5752 7580 1.878656 CGGACGGCAAAGAGAGAGGT 61.879 60.000 0.00 0.00 0.00 3.85
5753 7581 0.390472 GGACGGCAAAGAGAGAGGTG 60.390 60.000 0.00 0.00 0.00 4.00
5754 7582 0.390472 GACGGCAAAGAGAGAGGTGG 60.390 60.000 0.00 0.00 0.00 4.61
5755 7583 1.078848 CGGCAAAGAGAGAGGTGGG 60.079 63.158 0.00 0.00 0.00 4.61
5756 7584 1.377856 GGCAAAGAGAGAGGTGGGC 60.378 63.158 0.00 0.00 0.00 5.36
5757 7585 1.377856 GCAAAGAGAGAGGTGGGCC 60.378 63.158 0.00 0.00 0.00 5.80
5758 7586 1.301293 CAAAGAGAGAGGTGGGCCC 59.699 63.158 17.59 17.59 34.57 5.80
5759 7587 1.925972 AAAGAGAGAGGTGGGCCCC 60.926 63.158 22.27 10.91 34.57 5.80
5760 7588 2.713111 AAAGAGAGAGGTGGGCCCCA 62.713 60.000 22.27 0.00 34.57 4.96
5769 7597 3.712907 TGGGCCCCACTAACGAGC 61.713 66.667 22.27 0.00 0.00 5.03
5770 7598 3.400054 GGGCCCCACTAACGAGCT 61.400 66.667 12.23 0.00 0.00 4.09
5771 7599 2.125106 GGCCCCACTAACGAGCTG 60.125 66.667 0.00 0.00 0.00 4.24
5772 7600 2.820037 GCCCCACTAACGAGCTGC 60.820 66.667 0.00 0.00 0.00 5.25
5773 7601 2.982130 CCCCACTAACGAGCTGCT 59.018 61.111 0.00 0.00 0.00 4.24
5774 7602 1.296715 CCCCACTAACGAGCTGCTT 59.703 57.895 2.53 0.00 0.00 3.91
5775 7603 0.535335 CCCCACTAACGAGCTGCTTA 59.465 55.000 2.53 0.00 0.00 3.09
5776 7604 1.471676 CCCCACTAACGAGCTGCTTAG 60.472 57.143 2.53 4.39 0.00 2.18
5777 7605 1.476891 CCCACTAACGAGCTGCTTAGA 59.523 52.381 12.50 0.00 0.00 2.10
5778 7606 2.094182 CCCACTAACGAGCTGCTTAGAA 60.094 50.000 12.50 1.47 0.00 2.10
5779 7607 3.585862 CCACTAACGAGCTGCTTAGAAA 58.414 45.455 12.50 1.18 0.00 2.52
5780 7608 3.994392 CCACTAACGAGCTGCTTAGAAAA 59.006 43.478 12.50 0.00 0.00 2.29
5781 7609 4.451096 CCACTAACGAGCTGCTTAGAAAAA 59.549 41.667 12.50 0.00 0.00 1.94
5796 7624 4.525467 AAAAACCTAACGGCCCCC 57.475 55.556 0.00 0.00 0.00 5.40
5811 7639 1.221021 CCCCCTCTTTACCGTCTGC 59.779 63.158 0.00 0.00 0.00 4.26
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 0.809241 GGACTGATCTGGCTCAAGCG 60.809 60.000 5.33 0.00 43.26 4.68
113 114 5.282510 CGACATAGAGTTATTGGAGACCAC 58.717 45.833 0.00 0.00 30.78 4.16
129 130 3.667497 ACAGCCATGATACCGACATAG 57.333 47.619 0.00 0.00 0.00 2.23
136 137 1.027357 CCAGCAACAGCCATGATACC 58.973 55.000 0.00 0.00 0.00 2.73
141 142 0.889994 TAAAGCCAGCAACAGCCATG 59.110 50.000 0.00 0.00 0.00 3.66
156 157 9.233232 AGAAGCGCCGATTTTAAATTAATAAAG 57.767 29.630 2.29 0.00 0.00 1.85
171 172 3.127533 GGCACAAGAAGCGCCGAT 61.128 61.111 2.29 0.00 35.40 4.18
176 177 0.947244 AGAAACAGGCACAAGAAGCG 59.053 50.000 0.00 0.00 0.00 4.68
295 322 9.796120 GTACATTGATGAAAATTTTTCCCGATA 57.204 29.630 17.05 1.21 0.00 2.92
296 323 7.487829 CGTACATTGATGAAAATTTTTCCCGAT 59.512 33.333 17.05 11.73 0.00 4.18
297 324 6.804295 CGTACATTGATGAAAATTTTTCCCGA 59.196 34.615 17.05 10.28 0.00 5.14
298 325 6.584563 ACGTACATTGATGAAAATTTTTCCCG 59.415 34.615 17.05 8.83 0.00 5.14
299 326 7.621219 GCACGTACATTGATGAAAATTTTTCCC 60.621 37.037 17.05 10.58 0.00 3.97
300 327 7.116233 AGCACGTACATTGATGAAAATTTTTCC 59.884 33.333 17.05 5.55 0.00 3.13
301 328 8.006741 AGCACGTACATTGATGAAAATTTTTC 57.993 30.769 13.76 13.76 0.00 2.29
302 329 7.945033 AGCACGTACATTGATGAAAATTTTT 57.055 28.000 4.63 0.00 0.00 1.94
303 330 7.569226 GCAAGCACGTACATTGATGAAAATTTT 60.569 33.333 2.28 2.28 0.00 1.82
304 331 6.128849 GCAAGCACGTACATTGATGAAAATTT 60.129 34.615 9.90 0.00 0.00 1.82
305 332 5.345741 GCAAGCACGTACATTGATGAAAATT 59.654 36.000 9.90 0.00 0.00 1.82
306 333 4.858692 GCAAGCACGTACATTGATGAAAAT 59.141 37.500 9.90 0.00 0.00 1.82
318 348 1.391485 CTCTCACATGCAAGCACGTAC 59.609 52.381 0.00 0.00 0.00 3.67
467 501 6.610741 TTACATAAATACGCATGCATGTGA 57.389 33.333 39.25 25.26 40.61 3.58
627 662 3.386078 GCTGAATATCTCCAGAGGTGTGA 59.614 47.826 0.00 0.00 32.37 3.58
648 703 3.022607 ACTAATTACGGCCGTATCAGC 57.977 47.619 36.67 0.00 0.00 4.26
650 705 4.557296 GCAGTACTAATTACGGCCGTATCA 60.557 45.833 36.67 24.41 43.82 2.15
680 735 0.167251 CGTAACGGCATGTGGGTTTC 59.833 55.000 0.00 0.00 0.00 2.78
715 776 0.882474 GTCTACGCTCCACACTGAGT 59.118 55.000 0.00 0.00 34.74 3.41
835 896 5.360714 GGTTGACAATTGACATGGACCATAT 59.639 40.000 19.03 0.00 0.00 1.78
837 898 3.511146 GGTTGACAATTGACATGGACCAT 59.489 43.478 19.03 0.00 0.00 3.55
838 899 2.890311 GGTTGACAATTGACATGGACCA 59.110 45.455 19.03 0.00 0.00 4.02
843 912 5.775686 ACATCAAGGTTGACAATTGACATG 58.224 37.500 13.59 7.61 40.49 3.21
885 954 2.038557 GGAGGGCAGAACAGACTAAACA 59.961 50.000 0.00 0.00 0.00 2.83
886 955 2.701107 GGAGGGCAGAACAGACTAAAC 58.299 52.381 0.00 0.00 0.00 2.01
889 959 0.039180 TCGGAGGGCAGAACAGACTA 59.961 55.000 0.00 0.00 0.00 2.59
896 966 1.306141 ACAGGATCGGAGGGCAGAA 60.306 57.895 0.00 0.00 0.00 3.02
902 972 4.038522 CCATATATAGCACAGGATCGGAGG 59.961 50.000 0.00 0.00 0.00 4.30
906 976 5.330455 ACACCATATATAGCACAGGATCG 57.670 43.478 0.00 0.00 0.00 3.69
907 977 7.786030 ACATACACCATATATAGCACAGGATC 58.214 38.462 0.00 0.00 0.00 3.36
908 978 7.416777 CGACATACACCATATATAGCACAGGAT 60.417 40.741 0.00 0.00 0.00 3.24
909 979 6.127730 CGACATACACCATATATAGCACAGGA 60.128 42.308 0.00 0.00 0.00 3.86
927 1014 7.280205 AGGATAAAAACATCAAGGTCGACATAC 59.720 37.037 18.91 0.00 0.00 2.39
961 1177 5.562890 GCAAAGTGTGGAACTAATGGAACTC 60.563 44.000 0.00 0.00 38.56 3.01
1005 1241 3.390639 AGAAGAGGGGAATGTAGAGCATG 59.609 47.826 0.00 0.00 37.96 4.06
1021 1257 8.744652 TGAACTCAAGAATAGTAGGAAGAAGAG 58.255 37.037 0.00 0.00 0.00 2.85
1132 1368 2.752030 TGTCGGAGAGAAGAATCCCAT 58.248 47.619 0.00 0.00 36.95 4.00
1146 1382 0.756294 TCTTGTTGGAGCTTGTCGGA 59.244 50.000 0.00 0.00 0.00 4.55
1584 1822 5.105567 TGTTCCAAGTTACCAACTGAAGA 57.894 39.130 0.00 0.00 41.91 2.87
1650 1888 2.702751 TTAGTGTGCCACCGGACACG 62.703 60.000 9.46 0.00 45.88 4.49
1814 2060 0.592754 GACTATCCACGACGCAGAGC 60.593 60.000 0.00 0.00 0.00 4.09
1872 2126 3.039134 CCAAACGGGCCACAAGAC 58.961 61.111 4.39 0.00 0.00 3.01
1971 2225 2.675348 CGCTTCTTTTCTCTGACATCCC 59.325 50.000 0.00 0.00 0.00 3.85
2003 2257 3.627577 AGACGTGAAATGACTTTGCTTGT 59.372 39.130 0.00 0.00 0.00 3.16
2266 2585 2.503869 AGAGAGGGCATGGAATACCT 57.496 50.000 0.00 0.00 35.80 3.08
2482 2805 3.250040 CCTTCCAGTTCTAAACAACGTGG 59.750 47.826 0.00 0.00 0.00 4.94
2632 2957 4.383552 CCTTCTGGGAACTAAGACATGGAG 60.384 50.000 0.00 0.00 37.23 3.86
2643 2968 5.073428 GTGAAAATTCTCCTTCTGGGAACT 58.927 41.667 0.00 0.00 44.58 3.01
2644 2969 4.218635 GGTGAAAATTCTCCTTCTGGGAAC 59.781 45.833 6.94 0.00 44.58 3.62
2645 2970 4.407365 GGTGAAAATTCTCCTTCTGGGAA 58.593 43.478 6.94 0.00 44.58 3.97
2646 2971 3.245264 GGGTGAAAATTCTCCTTCTGGGA 60.245 47.826 12.51 0.00 42.77 4.37
2647 2972 3.092301 GGGTGAAAATTCTCCTTCTGGG 58.908 50.000 12.51 0.00 39.97 4.45
2648 2973 2.749621 CGGGTGAAAATTCTCCTTCTGG 59.250 50.000 12.51 0.00 39.97 3.86
2649 2974 2.162408 GCGGGTGAAAATTCTCCTTCTG 59.838 50.000 12.51 4.14 39.97 3.02
2650 2975 2.224769 TGCGGGTGAAAATTCTCCTTCT 60.225 45.455 12.51 0.00 39.97 2.85
2651 2976 2.159382 TGCGGGTGAAAATTCTCCTTC 58.841 47.619 12.51 6.73 39.97 3.46
2652 2977 2.286365 TGCGGGTGAAAATTCTCCTT 57.714 45.000 12.51 0.00 39.97 3.36
2653 2978 2.286365 TTGCGGGTGAAAATTCTCCT 57.714 45.000 12.51 0.00 39.97 3.69
2654 2979 3.378911 TTTTGCGGGTGAAAATTCTCC 57.621 42.857 5.83 5.83 39.50 3.71
2679 3004 2.758130 TGGCCTTCTGGGAAAGTTTTT 58.242 42.857 3.32 0.00 37.23 1.94
2680 3005 2.470057 TGGCCTTCTGGGAAAGTTTT 57.530 45.000 3.32 0.00 37.23 2.43
2681 3006 2.702270 ATGGCCTTCTGGGAAAGTTT 57.298 45.000 3.32 0.00 37.23 2.66
2790 3155 2.624029 CCAGGGCAGGTGGTAAATCAAT 60.624 50.000 0.00 0.00 0.00 2.57
2898 3268 1.202222 GCAGAAATGCGTCCAATCAGG 60.202 52.381 0.00 0.00 39.47 3.86
2960 3331 7.550712 TGCCAATAGTAGCAGACATGATATAG 58.449 38.462 0.00 0.00 33.08 1.31
2980 3351 2.093500 AGACGAAGACTATGCATGCCAA 60.093 45.455 16.68 1.59 0.00 4.52
3095 3476 1.631405 TTCCCCATTTGCCTGTTGAG 58.369 50.000 0.00 0.00 0.00 3.02
3982 5744 5.645497 AGTTACTTACTATGTTCCGACGACT 59.355 40.000 0.00 0.00 34.56 4.18
4498 6266 0.465097 CCAGGCCTGACCAATAGCAG 60.465 60.000 34.91 9.20 43.14 4.24
4772 6540 6.317088 CGTTGTCATACTCATTTCATTTGCT 58.683 36.000 0.00 0.00 0.00 3.91
4773 6541 5.003778 GCGTTGTCATACTCATTTCATTTGC 59.996 40.000 0.00 0.00 0.00 3.68
4826 6594 8.183536 TGATGTACACTAAAATTCATGCACATC 58.816 33.333 0.00 8.75 42.44 3.06
4906 6725 0.610232 GCTCACCTCTGCCAAACCAT 60.610 55.000 0.00 0.00 0.00 3.55
4951 6770 5.656859 AGCATACAACTATGTACACCAGAGA 59.343 40.000 12.16 0.00 44.47 3.10
4953 6772 5.932619 AGCATACAACTATGTACACCAGA 57.067 39.130 12.16 0.00 44.47 3.86
5057 6877 6.620877 TGGTTACTCCACTCTGTTATTCAT 57.379 37.500 0.00 0.00 41.93 2.57
5348 7176 1.494960 ACAAACCCATGCTTGGTTGT 58.505 45.000 17.14 17.14 45.23 3.32
5368 7196 5.094387 AGATTCAGAGTACCCCTGAGAAAA 58.906 41.667 13.24 2.81 41.16 2.29
5388 7216 6.545567 TGCTCAAGAGAGAGATATCAGAGAT 58.454 40.000 5.32 0.00 44.98 2.75
5389 7217 5.939447 TGCTCAAGAGAGAGATATCAGAGA 58.061 41.667 5.32 0.00 44.98 3.10
5390 7218 6.638096 TTGCTCAAGAGAGAGATATCAGAG 57.362 41.667 5.32 0.00 44.98 3.35
5391 7219 6.517027 GCATTGCTCAAGAGAGAGATATCAGA 60.517 42.308 5.32 0.00 44.98 3.27
5392 7220 5.636121 GCATTGCTCAAGAGAGAGATATCAG 59.364 44.000 5.32 0.00 44.98 2.90
5393 7221 5.539979 GCATTGCTCAAGAGAGAGATATCA 58.460 41.667 5.32 0.00 44.98 2.15
5394 7222 4.622313 CGCATTGCTCAAGAGAGAGATATC 59.378 45.833 7.12 0.00 44.98 1.63
5395 7223 4.558178 CGCATTGCTCAAGAGAGAGATAT 58.442 43.478 7.12 0.00 44.98 1.63
5454 7282 4.574674 ACTAGAATCACTCCCATTGCAA 57.425 40.909 0.00 0.00 0.00 4.08
5467 7295 9.130312 GTATCATGTCGATTGGTTACTAGAATC 57.870 37.037 0.00 0.00 35.39 2.52
5481 7309 5.731406 GCATGCAAAACTGTATCATGTCGAT 60.731 40.000 14.21 0.00 37.44 3.59
5527 7355 4.038763 TCCAGTAGTGAATGTTCAACTCGT 59.961 41.667 0.00 0.00 39.21 4.18
5541 7369 5.807011 GGCAAATAAGCAAATTCCAGTAGTG 59.193 40.000 0.00 0.00 35.83 2.74
5542 7370 5.393027 CGGCAAATAAGCAAATTCCAGTAGT 60.393 40.000 0.00 0.00 35.83 2.73
5543 7371 5.036737 CGGCAAATAAGCAAATTCCAGTAG 58.963 41.667 0.00 0.00 35.83 2.57
5544 7372 4.461081 ACGGCAAATAAGCAAATTCCAGTA 59.539 37.500 0.00 0.00 35.83 2.74
5545 7373 3.258123 ACGGCAAATAAGCAAATTCCAGT 59.742 39.130 0.00 0.00 35.83 4.00
5546 7374 3.848726 ACGGCAAATAAGCAAATTCCAG 58.151 40.909 0.00 0.00 35.83 3.86
5547 7375 3.509575 AGACGGCAAATAAGCAAATTCCA 59.490 39.130 0.00 0.00 35.83 3.53
5548 7376 3.859386 CAGACGGCAAATAAGCAAATTCC 59.141 43.478 0.00 0.00 35.83 3.01
5549 7377 3.304293 GCAGACGGCAAATAAGCAAATTC 59.696 43.478 0.00 0.00 43.97 2.17
5550 7378 3.253230 GCAGACGGCAAATAAGCAAATT 58.747 40.909 0.00 0.00 43.97 1.82
5551 7379 2.879826 GCAGACGGCAAATAAGCAAAT 58.120 42.857 0.00 0.00 43.97 2.32
5552 7380 2.346099 GCAGACGGCAAATAAGCAAA 57.654 45.000 0.00 0.00 43.97 3.68
5563 7391 0.378610 GCAAAGAATAGGCAGACGGC 59.621 55.000 0.00 0.00 43.74 5.68
5564 7392 1.017387 GGCAAAGAATAGGCAGACGG 58.983 55.000 0.00 0.00 0.00 4.79
5565 7393 0.652592 CGGCAAAGAATAGGCAGACG 59.347 55.000 0.00 0.00 0.00 4.18
5566 7394 1.666189 GACGGCAAAGAATAGGCAGAC 59.334 52.381 0.00 0.00 0.00 3.51
5567 7395 1.555075 AGACGGCAAAGAATAGGCAGA 59.445 47.619 0.00 0.00 0.00 4.26
5568 7396 1.667724 CAGACGGCAAAGAATAGGCAG 59.332 52.381 0.00 0.00 0.00 4.85
5569 7397 1.737838 CAGACGGCAAAGAATAGGCA 58.262 50.000 0.00 0.00 0.00 4.75
5570 7398 0.378610 GCAGACGGCAAAGAATAGGC 59.621 55.000 0.00 0.00 43.97 3.93
5584 7412 3.858868 TTGTCGTCCGCCAGCAGAC 62.859 63.158 0.00 0.00 0.00 3.51
5585 7413 3.158537 TTTGTCGTCCGCCAGCAGA 62.159 57.895 0.00 0.00 0.00 4.26
5586 7414 2.664851 TTTGTCGTCCGCCAGCAG 60.665 61.111 0.00 0.00 0.00 4.24
5587 7415 2.652382 TTCTTTGTCGTCCGCCAGCA 62.652 55.000 0.00 0.00 0.00 4.41
5588 7416 1.901650 CTTCTTTGTCGTCCGCCAGC 61.902 60.000 0.00 0.00 0.00 4.85
5589 7417 1.291877 CCTTCTTTGTCGTCCGCCAG 61.292 60.000 0.00 0.00 0.00 4.85
5590 7418 1.301401 CCTTCTTTGTCGTCCGCCA 60.301 57.895 0.00 0.00 0.00 5.69
5591 7419 1.289800 GACCTTCTTTGTCGTCCGCC 61.290 60.000 0.00 0.00 0.00 6.13
5592 7420 0.319641 AGACCTTCTTTGTCGTCCGC 60.320 55.000 0.00 0.00 37.80 5.54
5593 7421 2.150397 AAGACCTTCTTTGTCGTCCG 57.850 50.000 0.00 0.00 31.57 4.79
5601 7429 0.467290 TGGCGGCAAAGACCTTCTTT 60.467 50.000 10.22 0.00 46.75 2.52
5602 7430 0.890996 CTGGCGGCAAAGACCTTCTT 60.891 55.000 14.48 0.00 38.59 2.52
5603 7431 1.302832 CTGGCGGCAAAGACCTTCT 60.303 57.895 14.48 0.00 0.00 2.85
5604 7432 2.982744 GCTGGCGGCAAAGACCTTC 61.983 63.158 14.48 0.00 41.35 3.46
5605 7433 2.983725 AAGCTGGCGGCAAAGACCTT 62.984 55.000 22.28 7.78 44.79 3.50
5606 7434 3.497884 AAGCTGGCGGCAAAGACCT 62.498 57.895 22.28 1.53 44.79 3.85
5607 7435 2.985847 AAGCTGGCGGCAAAGACC 60.986 61.111 22.28 0.00 44.79 3.85
5608 7436 1.234615 TACAAGCTGGCGGCAAAGAC 61.235 55.000 22.28 2.82 44.79 3.01
5609 7437 0.536233 TTACAAGCTGGCGGCAAAGA 60.536 50.000 22.28 0.00 44.79 2.52
5610 7438 0.313672 TTTACAAGCTGGCGGCAAAG 59.686 50.000 22.28 11.91 44.79 2.77
5611 7439 0.747255 TTTTACAAGCTGGCGGCAAA 59.253 45.000 22.28 9.28 44.79 3.68
5612 7440 0.747255 TTTTTACAAGCTGGCGGCAA 59.253 45.000 22.28 2.46 44.79 4.52
5613 7441 2.420138 TTTTTACAAGCTGGCGGCA 58.580 47.368 22.28 12.58 44.79 5.69
5628 7456 3.492482 CCAGTTCTTTGCCGTCCATTTTT 60.492 43.478 0.00 0.00 0.00 1.94
5629 7457 2.035832 CCAGTTCTTTGCCGTCCATTTT 59.964 45.455 0.00 0.00 0.00 1.82
5630 7458 1.613437 CCAGTTCTTTGCCGTCCATTT 59.387 47.619 0.00 0.00 0.00 2.32
5631 7459 1.247567 CCAGTTCTTTGCCGTCCATT 58.752 50.000 0.00 0.00 0.00 3.16
5632 7460 1.244019 GCCAGTTCTTTGCCGTCCAT 61.244 55.000 0.00 0.00 0.00 3.41
5633 7461 1.896660 GCCAGTTCTTTGCCGTCCA 60.897 57.895 0.00 0.00 0.00 4.02
5634 7462 1.600916 AGCCAGTTCTTTGCCGTCC 60.601 57.895 0.00 0.00 0.00 4.79
5635 7463 0.884704 TCAGCCAGTTCTTTGCCGTC 60.885 55.000 0.00 0.00 0.00 4.79
5636 7464 0.250901 ATCAGCCAGTTCTTTGCCGT 60.251 50.000 0.00 0.00 0.00 5.68
5637 7465 0.169672 CATCAGCCAGTTCTTTGCCG 59.830 55.000 0.00 0.00 0.00 5.69
5638 7466 0.529378 CCATCAGCCAGTTCTTTGCC 59.471 55.000 0.00 0.00 0.00 4.52
5639 7467 0.108945 GCCATCAGCCAGTTCTTTGC 60.109 55.000 0.00 0.00 34.35 3.68
5640 7468 1.250328 TGCCATCAGCCAGTTCTTTG 58.750 50.000 0.00 0.00 42.71 2.77
5641 7469 1.999648 TTGCCATCAGCCAGTTCTTT 58.000 45.000 0.00 0.00 42.71 2.52
5642 7470 1.891150 CTTTGCCATCAGCCAGTTCTT 59.109 47.619 0.00 0.00 42.71 2.52
5643 7471 1.074405 TCTTTGCCATCAGCCAGTTCT 59.926 47.619 0.00 0.00 42.71 3.01
5644 7472 1.200948 GTCTTTGCCATCAGCCAGTTC 59.799 52.381 0.00 0.00 42.71 3.01
5645 7473 1.251251 GTCTTTGCCATCAGCCAGTT 58.749 50.000 0.00 0.00 42.71 3.16
5646 7474 0.111061 TGTCTTTGCCATCAGCCAGT 59.889 50.000 0.00 0.00 42.71 4.00
5647 7475 1.471119 ATGTCTTTGCCATCAGCCAG 58.529 50.000 0.00 0.00 42.71 4.85
5648 7476 1.820519 GAATGTCTTTGCCATCAGCCA 59.179 47.619 0.00 0.00 42.71 4.75
5649 7477 2.097825 AGAATGTCTTTGCCATCAGCC 58.902 47.619 0.00 0.00 42.71 4.85
5650 7478 3.863142 AAGAATGTCTTTGCCATCAGC 57.137 42.857 0.00 0.00 44.14 4.26
5659 7487 3.056322 GGCTGATGGCAAAGAATGTCTTT 60.056 43.478 4.85 0.00 46.75 2.52
5660 7488 2.494870 GGCTGATGGCAAAGAATGTCTT 59.505 45.455 4.85 0.00 44.01 3.01
5661 7489 2.097825 GGCTGATGGCAAAGAATGTCT 58.902 47.619 4.85 0.00 44.01 3.41
5662 7490 1.820519 TGGCTGATGGCAAAGAATGTC 59.179 47.619 4.85 0.00 46.03 3.06
5663 7491 1.927487 TGGCTGATGGCAAAGAATGT 58.073 45.000 4.85 0.00 46.03 2.71
5672 7500 1.648504 GCAAAGAATTGGCTGATGGC 58.351 50.000 0.00 0.00 37.02 4.40
5680 7508 3.406682 GCAGACGGCAAAGAATTGG 57.593 52.632 0.00 0.00 43.97 3.16
5698 7526 1.982073 GATTCTTTGCCGTCCGCCAG 61.982 60.000 0.00 0.00 36.24 4.85
5699 7527 2.033448 ATTCTTTGCCGTCCGCCA 59.967 55.556 0.00 0.00 36.24 5.69
5700 7528 1.305930 AAGATTCTTTGCCGTCCGCC 61.306 55.000 0.00 0.00 36.24 6.13
5701 7529 0.521735 AAAGATTCTTTGCCGTCCGC 59.478 50.000 10.82 0.00 38.31 5.54
5702 7530 1.729149 GCAAAGATTCTTTGCCGTCCG 60.729 52.381 37.25 16.07 46.51 4.79
5703 7531 1.982612 GCAAAGATTCTTTGCCGTCC 58.017 50.000 37.25 19.85 46.51 4.79
5709 7537 2.227388 AGCTGACGGCAAAGATTCTTTG 59.773 45.455 27.43 27.43 44.79 2.77
5710 7538 2.227388 CAGCTGACGGCAAAGATTCTTT 59.773 45.455 8.42 5.82 44.79 2.52
5711 7539 1.808945 CAGCTGACGGCAAAGATTCTT 59.191 47.619 8.42 0.00 44.79 2.52
5712 7540 1.446907 CAGCTGACGGCAAAGATTCT 58.553 50.000 8.42 0.00 44.79 2.40
5713 7541 0.449388 CCAGCTGACGGCAAAGATTC 59.551 55.000 17.39 0.00 44.79 2.52
5714 7542 2.559785 CCAGCTGACGGCAAAGATT 58.440 52.632 17.39 0.00 44.79 2.40
5715 7543 4.308526 CCAGCTGACGGCAAAGAT 57.691 55.556 17.39 0.00 44.79 2.40
5729 7557 3.121030 CTCTTTGCCGTCCGCCAG 61.121 66.667 0.00 0.00 36.24 4.85
5730 7558 3.589654 CTCTCTTTGCCGTCCGCCA 62.590 63.158 0.00 0.00 36.24 5.69
5731 7559 2.815647 CTCTCTTTGCCGTCCGCC 60.816 66.667 0.00 0.00 36.24 6.13
5732 7560 1.807573 CTCTCTCTTTGCCGTCCGC 60.808 63.158 0.00 0.00 38.31 5.54
5733 7561 1.153745 CCTCTCTCTTTGCCGTCCG 60.154 63.158 0.00 0.00 0.00 4.79
5734 7562 0.390472 CACCTCTCTCTTTGCCGTCC 60.390 60.000 0.00 0.00 0.00 4.79
5735 7563 0.390472 CCACCTCTCTCTTTGCCGTC 60.390 60.000 0.00 0.00 0.00 4.79
5736 7564 1.674057 CCACCTCTCTCTTTGCCGT 59.326 57.895 0.00 0.00 0.00 5.68
5737 7565 1.078848 CCCACCTCTCTCTTTGCCG 60.079 63.158 0.00 0.00 0.00 5.69
5738 7566 1.377856 GCCCACCTCTCTCTTTGCC 60.378 63.158 0.00 0.00 0.00 4.52
5739 7567 1.377856 GGCCCACCTCTCTCTTTGC 60.378 63.158 0.00 0.00 0.00 3.68
5740 7568 1.301293 GGGCCCACCTCTCTCTTTG 59.699 63.158 19.95 0.00 35.85 2.77
5741 7569 1.925972 GGGGCCCACCTCTCTCTTT 60.926 63.158 26.86 0.00 40.03 2.52
5742 7570 2.285743 GGGGCCCACCTCTCTCTT 60.286 66.667 26.86 0.00 40.03 2.85
5743 7571 3.615811 TGGGGCCCACCTCTCTCT 61.616 66.667 24.76 0.00 37.32 3.10
5752 7580 3.712907 GCTCGTTAGTGGGGCCCA 61.713 66.667 24.76 24.76 0.00 5.36
5753 7581 3.400054 AGCTCGTTAGTGGGGCCC 61.400 66.667 18.17 18.17 0.00 5.80
5754 7582 2.125106 CAGCTCGTTAGTGGGGCC 60.125 66.667 0.00 0.00 0.00 5.80
5755 7583 2.804828 AAGCAGCTCGTTAGTGGGGC 62.805 60.000 0.00 0.00 0.00 5.80
5756 7584 0.535335 TAAGCAGCTCGTTAGTGGGG 59.465 55.000 0.00 0.00 0.00 4.96
5757 7585 1.476891 TCTAAGCAGCTCGTTAGTGGG 59.523 52.381 0.00 0.00 0.00 4.61
5758 7586 2.941453 TCTAAGCAGCTCGTTAGTGG 57.059 50.000 0.00 0.00 0.00 4.00
5759 7587 5.591643 TTTTTCTAAGCAGCTCGTTAGTG 57.408 39.130 0.00 0.00 0.00 2.74
5779 7607 4.525467 GGGGGCCGTTAGGTTTTT 57.475 55.556 0.00 0.00 40.50 1.94
5793 7621 1.221021 GCAGACGGTAAAGAGGGGG 59.779 63.158 0.00 0.00 0.00 5.40
5794 7622 4.934989 GCAGACGGTAAAGAGGGG 57.065 61.111 0.00 0.00 0.00 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.